diff options
Diffstat (limited to 'nixpkgs/pkgs/applications/science/biology/octopus/default.nix')
| -rw-r--r-- | nixpkgs/pkgs/applications/science/biology/octopus/default.nix | 20 |
1 files changed, 16 insertions, 4 deletions
diff --git a/nixpkgs/pkgs/applications/science/biology/octopus/default.nix b/nixpkgs/pkgs/applications/science/biology/octopus/default.nix index b7a4a4c1a2a0..0ef48ec6413b 100644 --- a/nixpkgs/pkgs/applications/science/biology/octopus/default.nix +++ b/nixpkgs/pkgs/applications/science/biology/octopus/default.nix @@ -1,18 +1,30 @@ -{lib, stdenv, fetchFromGitHub, cmake, boost, gmp, htslib, zlib, lzma, pkg-config}: +{lib, stdenv, fetchpatch, fetchFromGitHub, cmake, boost, gmp, htslib, zlib, xz, pkg-config}: stdenv.mkDerivation rec { pname = "octopus"; - version = "0.7.0"; + version = "0.7.1"; src = fetchFromGitHub { owner = "luntergroup"; repo = "octopus"; rev = "v${version}"; - sha256 = "0y3g0xc3x3adbcmds6hh60023pfv1qrz6ak7jd88fg9vxi9bdrfb"; + sha256 = "sha256-TZ57uKTZ87FWpLNGPY8kbML1EDM8fnEFbXR+Z3dmiao="; }; + patches = [ + # Backport TZ patchs (https://github.com/luntergroup/octopus/issues/149) + (fetchpatch { + url = "https://github.com/luntergroup/octopus/commit/3dbd8cc33616129ad356e99a4dae82e4f6702250.patch"; + sha256 = "sha256-UCufVU9x+L1zCEhkr/48KFYRvh8w26w8Jr+O+wULKK8="; + }) + (fetchpatch { + url = "https://github.com/luntergroup/octopus/commit/af5a66a2792bd098fb53eb79fb4822625f09305e.patch"; + sha256 = "sha256-r8jv6EZHfTWVLYUBau3F+ilOd9IeH8rmatorEY5LXP4="; + }) + ]; + nativeBuildInputs = [ cmake pkg-config ]; - buildInputs = [ boost gmp htslib zlib lzma ]; + buildInputs = [ boost gmp htslib zlib xz ]; postInstall = '' mkdir $out/bin |