diff options
Diffstat (limited to 'nixpkgs/pkgs/applications/science/biology/octopus/default.nix')
-rw-r--r-- | nixpkgs/pkgs/applications/science/biology/octopus/default.nix | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/nixpkgs/pkgs/applications/science/biology/octopus/default.nix b/nixpkgs/pkgs/applications/science/biology/octopus/default.nix new file mode 100644 index 000000000000..0a2074a06e97 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/biology/octopus/default.nix @@ -0,0 +1,30 @@ +{stdenv, fetchFromGitHub, cmake, boost, gmp, htslib, zlib, lzma, pkg-config}: + +stdenv.mkDerivation rec { + pname = "octopus"; + version = "0.6.3-beta"; + name = "${pname}-${version}"; + + src = fetchFromGitHub { + owner = "luntergroup"; + repo = "octopus"; + rev = "v${version}"; + sha256 = "042fycg8ppld7iajpzq2d8h8wr0nw43zbl57y125sfihryvr373n"; + }; + + nativeBuildInputs = [ cmake pkg-config ]; + buildInputs = [ boost gmp htslib zlib lzma ]; + + postInstall = '' + mkdir $out/bin + mv $out/octopus $out/bin + ''; + + meta = with stdenv.lib; { + description = "Bayesian haplotype-based mutation calling"; + license = licenses.mit; + homepage = "https://github.com/luntergroup/octopus"; + maintainers = with maintainers; [ jbedo ]; + platforms = platforms.x86_64; + }; +} |