diff options
Diffstat (limited to 'nixpkgs/pkgs/applications/science/biology/obitools/obitools3.nix')
-rw-r--r-- | nixpkgs/pkgs/applications/science/biology/obitools/obitools3.nix | 38 |
1 files changed, 38 insertions, 0 deletions
diff --git a/nixpkgs/pkgs/applications/science/biology/obitools/obitools3.nix b/nixpkgs/pkgs/applications/science/biology/obitools/obitools3.nix new file mode 100644 index 000000000000..076e459c8f0b --- /dev/null +++ b/nixpkgs/pkgs/applications/science/biology/obitools/obitools3.nix @@ -0,0 +1,38 @@ +{ stdenv, fetchurl, python3Packages, cmake, python3 }: + +let + pythonPackages = python3Packages; +in + +pythonPackages.buildPythonApplication rec { + pname = "obitools3"; + version = "3.0.0-beta14"; + + src = fetchurl { + url = "https://git.metabarcoding.org/obitools/${pname}/repository/v${version}/archive.tar.gz"; + sha256 = "17krklxfvxl6baf2m394gm1a88y0lg0bwqx20cf5q39zyw04z442"; + }; + + preBuild = '' + substituteInPlace src/CMakeLists.txt --replace \$'{PYTHONLIB}' "$out/lib/${python3.libPrefix}/site-packages"; + export NIX_CFLAGS_COMPILE="-L $out/lib/${python3.libPrefix}/site-packages $NIX_CFLAGS_COMPILE" + ''; + + disabled = !pythonPackages.isPy3k; + + nativeBuildInputs = [ pythonPackages.cython cmake ]; + + dontConfigure = true; + + doCheck = true; + + enableParallelBuilding = true; + + meta = with stdenv.lib ; { + description = "Management of analyses and data in DNA metabarcoding"; + homepage = "https://git.metabarcoding.org/obitools/obitools3"; + license = licenses.cecill20; + maintainers = [ maintainers.bzizou ]; + platforms = platforms.all; + }; +} |