1 files changed, 55 insertions, 0 deletions
diff --git a/nixpkgs/pkgs/applications/science/biology/macs2/default.nix b/nixpkgs/pkgs/applications/science/biology/macs2/default.nix
new file mode 100644
index 000000000000..73f12af6a605
--- /dev/null
+++ b/nixpkgs/pkgs/applications/science/biology/macs2/default.nix
@@ -0,0 +1,55 @@
+{ lib, python3, fetchpatch, fetchPypi }:
+
+python3.pkgs.buildPythonPackage rec {
+  pname = "macs2";
+  version = "2.2.9.1";
+  format = "pyproject";
+
+  src = fetchPypi {
+    pname = lib.toUpper pname;
+    inherit version;
+    hash = "sha256-jVa8N/uCP8Y4fXgTjOloQFxUoKjNl3ZoJwX9CYMlLRY=";
+  };
+
+  patches = [
+    # https://github.com/macs3-project/MACS/pull/590
+    (fetchpatch {
+      name = "remove-pip-build-dependency.patch";
+      url = "https://github.com/macs3-project/MACS/commit/cf95a930daccf9f16e5b9a9224c5a2670cf67939.patch";
+      hash = "sha256-WB3Ubqk5fKtZt97QYo/sZDU/yya9MUo1NL4VsKXR+Yo=";
+    })
+  ];
+
+  nativeBuildInputs = with python3.pkgs; [
+    cython
+    numpy
+    setuptools
+    wheel
+  ];
+
+  propagatedBuildInputs = with python3.pkgs; [
+    numpy
+  ];
+
+  __darwinAllowLocalNetworking = true;
+
+  nativeCheckInputs = with python3.pkgs; [
+    unittestCheckHook
+  ];
+
+  unittestFlagsArray = [
+    "-s"
+    "test"
+  ];
+
+  pythonImportsCheck = [ "MACS2" ];
+
+  meta = with lib; {
+    description = "Model-based Analysis for ChIP-Seq";
+    mainProgram = "macs2";
+    homepage = "https://github.com/macs3-project/MACS/";
+    changelog = "https://github.com/macs3-project/MACS/releases/tag/v${version}";
+    license = licenses.bsd3;
+    maintainers = with maintainers; [ gschwartz ];
+  };
+}