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Diffstat (limited to 'nixpkgs/pkgs/applications/science/biology/igv/default.nix')
-rw-r--r--nixpkgs/pkgs/applications/science/biology/igv/default.nix15
1 files changed, 10 insertions, 5 deletions
diff --git a/nixpkgs/pkgs/applications/science/biology/igv/default.nix b/nixpkgs/pkgs/applications/science/biology/igv/default.nix
index 827fdb6fa1ab..be663628a426 100644
--- a/nixpkgs/pkgs/applications/science/biology/igv/default.nix
+++ b/nixpkgs/pkgs/applications/science/biology/igv/default.nix
@@ -1,11 +1,11 @@
-{ lib, stdenv, fetchzip, jdk11, wrapGAppsHook }:
+{ lib, stdenv, fetchzip, jdk17, testers, wrapGAppsHook, igv }:
 
 stdenv.mkDerivation rec {
   pname = "igv";
-  version = "2.17.0";
+  version = "2.17.1";
   src = fetchzip {
     url = "https://data.broadinstitute.org/igv/projects/downloads/${lib.versions.majorMinor version}/IGV_${version}.zip";
-    sha256 = "sha256-nOwaeVIvqfHrvykfTyOdnMN6+QpsvNN14jXBQx7THsE=";
+    sha256 = "sha256-EXI1jVr8cJPYLLe81hzqLpP3IypHBZ0cb6z+WrDeFKQ=";
   };
 
   installPhase = ''
@@ -13,10 +13,10 @@ stdenv.mkDerivation rec {
     cp -Rv * $out/share/
 
     sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igv.sh
-    sed -i 's#java#${jdk11}/bin/java#g' $out/share/igv.sh
+    sed -i 's#java#${jdk17}/bin/java#g' $out/share/igv.sh
 
     sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igvtools
-    sed -i 's#java#${jdk11}/bin/java#g' $out/share/igvtools
+    sed -i 's#java#${jdk17}/bin/java#g' $out/share/igvtools
 
     ln -s $out/share/igv.sh $out/bin/igv
     ln -s $out/share/igvtools $out/bin/igvtools
@@ -26,6 +26,11 @@ stdenv.mkDerivation rec {
   '';
   nativeBuildInputs = [ wrapGAppsHook ];
 
+  passthru.tests.version = testers.testVersion {
+    package = igv;
+  };
+
+
   meta = with lib; {
     homepage = "https://www.broadinstitute.org/igv/";
     description = "A visualization tool for interactive exploration of genomic datasets";