diff options
Diffstat (limited to 'nixpkgs/pkgs/applications/science/biology/bedops/default.nix')
-rw-r--r-- | nixpkgs/pkgs/applications/science/biology/bedops/default.nix | 18 |
1 files changed, 15 insertions, 3 deletions
diff --git a/nixpkgs/pkgs/applications/science/biology/bedops/default.nix b/nixpkgs/pkgs/applications/science/biology/bedops/default.nix index bde774c622bd..d455e98264cc 100644 --- a/nixpkgs/pkgs/applications/science/biology/bedops/default.nix +++ b/nixpkgs/pkgs/applications/science/biology/bedops/default.nix @@ -18,7 +18,20 @@ stdenv.mkDerivation rec { # We use nixpkgs versions of these libraries rm -r third-party sed -i '/^LIBS/d' system.mk/* - sed -i 's|^LIBRARIES.*$|LIBRARIES = -lbz2 -lz -ljansson|' */*/*/*/Makefile + sed -i 's|^LIBRARIES.*$|LIBRARIES = -lbz2 -lz -ljansson|' */*/*/*/Makefile* + + # `make support` installs above libraries + substituteInPlace system.mk/* \ + --replace ": support" ":" + + # Variable name is different in this makefile + substituteInPlace applications/bed/sort-bed/src/Makefile.darwin \ + --replace "DIST_DIR" "BINDIR" + + # `mkdir -p $BINDIR` is missing + substituteInPlace applications/bed/sort-bed/src/Makefile.darwin \ + --replace 'mkdir -p ''${OBJ_DIR}' 'mkdir -p ''${OBJ_DIR} ''${BINDIR}' + substituteInPlace applications/bed/starch/src/Makefile --replace '$(LIBRARIES)' "" # Function name is different in nixpkgs provided libraries @@ -27,7 +40,7 @@ stdenv.mkDerivation rec { done # Don't force static - for f in */*/*/*/Makefile ; do + for f in */*/*/*/Makefile* ; do substituteInPlace $f --replace '-static' "" done ''; @@ -46,6 +59,5 @@ stdenv.mkDerivation rec { license = licenses.gpl2Only; maintainers = with maintainers; [ jbedo ]; platforms = platforms.x86_64; - broken = stdenv.isDarwin; }; } |