diff options
| -rw-r--r-- | pkgs/applications/science/biology/macse/default.nix | 32 | ||||
| -rw-r--r-- | pkgs/top-level/all-packages.nix | 2 |
2 files changed, 34 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/macse/default.nix b/pkgs/applications/science/biology/macse/default.nix new file mode 100644 index 000000000000..59938addbe82 --- /dev/null +++ b/pkgs/applications/science/biology/macse/default.nix @@ -0,0 +1,32 @@ +{ stdenv, fetchurl, jre, makeWrapper }: + +stdenv.mkDerivation rec { + pname = "macse"; + version = "2.03"; + + src = fetchurl { + url = "https://bioweb.supagro.inra.fr/${pname}/releases/${pname}_v${version}.jar"; + sha256 = "0jnjyz4f255glg37rawzdv4m6nfs7wfwc5dny7afvx4dz2sv4ssh"; + }; + + nativeBuildInputs = [ makeWrapper ]; + + dontBuild = true; + unpackPhase = ":"; + + installPhase = '' + runHook preInstall + mkdir -p $out/share/java + cp -s $src $out/share/java/macse.jar + makeWrapper ${jre}/bin/java $out/bin/macse --add-flags "-jar $out/share/java/macse.jar" + runHook postInstall + ''; + + meta = with stdenv.lib; { + description = "Multiple alignment of coding sequences"; + homepage = "https://bioweb.supagro.inra.fr/macse/"; + license = licenses.gpl2; + maintainers = [ maintainers.bzizou ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 1a9a1c54b3a5..6955aa8d79fb 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -21898,6 +21898,8 @@ in kallisto = callPackage ../applications/science/biology/kallisto { }; + macse = callPackage ../applications/science/biology/macse { }; + migrate = callPackage ../applications/science/biology/migrate { }; mirtk = callPackage ../development/libraries/science/biology/mirtk { }; |