diff options
| -rw-r--r-- | pkgs/applications/science/biology/platypus/default.nix | 38 | ||||
| -rw-r--r-- | pkgs/top-level/all-packages.nix | 2 |
2 files changed, 40 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/platypus/default.nix b/pkgs/applications/science/biology/platypus/default.nix new file mode 100644 index 000000000000..868540fcbc3b --- /dev/null +++ b/pkgs/applications/science/biology/platypus/default.nix @@ -0,0 +1,38 @@ +{stdenv, fetchFromGitHub, python27, htslib, zlib, makeWrapper}: + +let python = python27.withPackages (ps: with ps; [ cython ]); + +in stdenv.mkDerivation rec { + name = "platypus-unstable-${version}"; + version = "2017-03-07"; + + src = fetchFromGitHub { + owner = "andyrimmer"; + repo = "Platypus"; + rev = "cbbd914"; + sha256 = "0xgj3pl7n4c12j5pp5qyjfk4rsvb5inwzrpcbhdf3br5f3mmdsb9"; + }; + + buildInputs = [ htslib python zlib makeWrapper ]; + + buildPhase = '' + patchShebangs . + make + ''; + + installPhase = '' + mkdir -p $out/libexec/platypus + cp -r ./* $out/libexec/platypus + + mkdir -p $out/bin + makeWrapper ${python}/bin/python $out/bin/platypus --add-flags "$out/libexec/platypus/bin/Platypus.py" + ''; + + meta = with stdenv.lib; { + description = "The Platypus variant caller"; + license = licenses.gpl3; + homepage = https://github.com/andyrimmer/Platypus; + maintainers = with maintainers; [ jbedo ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 3ab8684bec25..12d9b13bc781 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -16996,6 +16996,8 @@ with pkgs; paml = callPackage ../applications/science/biology/paml { }; + platypus = callPackage ../applications/science/biology/platypus/default.nix { }; + plink = callPackage ../applications/science/biology/plink/default.nix { }; plink-ng = callPackage ../applications/science/biology/plink-ng/default.nix { }; |