diff options
| -rw-r--r-- | pkgs/applications/science/biology/delly/default.nix | 40 | ||||
| -rw-r--r-- | pkgs/top-level/all-packages.nix | 2 |
2 files changed, 42 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/delly/default.nix b/pkgs/applications/science/biology/delly/default.nix new file mode 100644 index 000000000000..bfdf5a1bb17e --- /dev/null +++ b/pkgs/applications/science/biology/delly/default.nix @@ -0,0 +1,40 @@ +{ stdenv, fetchFromGitHub, htslib, zlib, bzip2, lzma, ncurses, boost }: + +stdenv.mkDerivation rec { + pname = "delly"; + version = "0.8.1"; + + src = fetchFromGitHub { + owner = "dellytools"; + repo = pname; + rev = "v${version}"; + sha256 = "18gm86j1g1k4z1cjv2m5v9rsl1xqs2w3dhwcsnzx2mhkrvmlc4i1"; + }; + + buildInputs = [ zlib htslib bzip2 lzma ncurses boost ]; + + EBROOTHTSLIB = htslib; + + installPhase = '' + runHook preInstall + + install -Dm555 src/delly $out/bin/delly + + runHook postInstall + ''; + + meta = with stdenv.lib; { + description = "Structural variant caller for mapped DNA sequenced data"; + license = licenses.gpl3; + maintainers = with maintainers; [ scalavision ]; + platforms = platforms.linux; + longDescription = '' + Delly is an integrated structural variant (SV) prediction method + that can discover, genotype and visualize deletions, tandem duplications, + inversions and translocations at single-nucleotide resolution in + short-read massively parallel sequencing data. It uses paired-ends, + split-reads and read-depth to sensitively and accurately delineate + genomic rearrangements throughout the genome. + ''; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 4e84b42bf093..6a9a6c39996f 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -23005,6 +23005,8 @@ in conglomerate = callPackage ../applications/science/biology/conglomerate { }; dcm2niix = callPackage ../applications/science/biology/dcm2niix { }; + + delly = callPackage ../applications/science/biology/delly { }; diamond = callPackage ../applications/science/biology/diamond { }; |