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| author | Dmitry Kalinkin <dmitry.kalinkin@gmail.com> | 2020-02-11 03:54:02 -0500 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2020-02-11 03:54:02 -0500 |
| commit | 5f2a3bef33523086007ca6eea84183e08c3c2771 (patch) | |
| tree | e1416bc23902d02fe9d2c2b78c1cf2bbae930332 /pkgs | |
| parent | f216b03d5b01490aadc54e5e9d5e3cb607816262 (diff) | |
| parent | a8fe9e7affb27e803b5cfaa134019b028b25b8f0 (diff) | |
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Merge pull request #79778 from jbedo/delly
delly: 0.8.1 -> 0.8.2
Diffstat (limited to 'pkgs')
| -rw-r--r-- | pkgs/applications/science/biology/delly/default.nix | 17 |
1 files changed, 13 insertions, 4 deletions
diff --git a/pkgs/applications/science/biology/delly/default.nix b/pkgs/applications/science/biology/delly/default.nix index bfdf5a1bb17e..a6c45f8aa44e 100644 --- a/pkgs/applications/science/biology/delly/default.nix +++ b/pkgs/applications/science/biology/delly/default.nix @@ -1,16 +1,25 @@ -{ stdenv, fetchFromGitHub, htslib, zlib, bzip2, lzma, ncurses, boost }: +{ stdenv, fetchpatch, fetchFromGitHub, htslib, zlib, bzip2, lzma, ncurses, boost }: -stdenv.mkDerivation rec { +let + htslibPatch = fetchpatch { + url = "https://github.com/dellytools/delly/commit/0e5c710b0c5ea790bb39699d4cbd49cf4fb86f14.diff"; + sha256 = "09bz1qqvzhdzm99hf9zgrv80kq9jlr1m2mdvx96p2hk5lpnbdl7y"; + excludes = [ "src/htslib" ]; + }; + +in stdenv.mkDerivation rec { pname = "delly"; - version = "0.8.1"; + version = "0.8.2"; src = fetchFromGitHub { owner = "dellytools"; repo = pname; rev = "v${version}"; - sha256 = "18gm86j1g1k4z1cjv2m5v9rsl1xqs2w3dhwcsnzx2mhkrvmlc4i1"; + sha256 = "14bkmixz7737xj192ww96s3a20zc7xs7r04db8avw3ggi3i1s1cs"; }; + patches = [ htslibPatch ]; + buildInputs = [ zlib htslib bzip2 lzma ncurses boost ]; EBROOTHTSLIB = htslib; |