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| author | Ben Darwin <bcdarwin@gmail.com> | 2019-12-02 11:20:38 -0500 |
|---|---|---|
| committer | Ben Darwin <bcdarwin@gmail.com> | 2019-12-06 12:00:44 -0500 |
| commit | 3fa5a19cf867ae2ef46632ffebf910468d86f19f (patch) | |
| tree | 4facf593f539c7830b07aa80069e4e3e0bb9532a /pkgs | |
| parent | 13f55534cb2a7596339fc6e1acc450c87870d517 (diff) | |
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ocamlPackages_latest.phylogenetics: init at unstable-2019-11-15
Diffstat (limited to 'pkgs')
| -rw-r--r-- | pkgs/development/ocaml-modules/phylogenetics/default.nix | 28 | ||||
| -rw-r--r-- | pkgs/top-level/ocaml-packages.nix | 2 |
2 files changed, 30 insertions, 0 deletions
diff --git a/pkgs/development/ocaml-modules/phylogenetics/default.nix b/pkgs/development/ocaml-modules/phylogenetics/default.nix new file mode 100644 index 000000000000..e665a3235788 --- /dev/null +++ b/pkgs/development/ocaml-modules/phylogenetics/default.nix @@ -0,0 +1,28 @@ +{ stdenv, buildDunePackage, fetchFromGitHub, ppx_deriving +, alcotest, biocaml, gnuplot, lacaml, menhir, owl }: + +buildDunePackage rec { + pname = "phylogenetics"; + version = "unstable-2019-11-15"; + + src = fetchFromGitHub { + owner = "biocaml"; + repo = pname; + rev = "91c03834db065cf4a86f33affbb9cfd216defc9f"; + sha256 = "0i9m0633a6a724as35ix8z3p1gj267cl0hmqrpw4qfq39zxmgnxb"; + }; + + minimumOCamlVersion = "4.08"; # e.g., uses Float.min + + checkInputs = [ alcotest ]; + propagatedBuildInputs = [ biocaml gnuplot lacaml menhir owl ppx_deriving ]; + + doCheck = false; # many tests require bppsuite + + meta = with stdenv.lib; { + inherit (std.meta) homepage; + description = "Bioinformatics library for Ocaml"; + maintainers = [ maintainers.bcdarwin ]; + license = licenses.cecill-b; + }; +} diff --git a/pkgs/top-level/ocaml-packages.nix b/pkgs/top-level/ocaml-packages.nix index 40f09c8d5563..1421abfc111b 100644 --- a/pkgs/top-level/ocaml-packages.nix +++ b/pkgs/top-level/ocaml-packages.nix @@ -629,6 +629,8 @@ let pgsolver = callPackage ../development/ocaml-modules/pgsolver { }; + phylogenetics = callPackage ../development/ocaml-modules/phylogenetics { }; + piqi = callPackage ../development/ocaml-modules/piqi { base64 = base64_2; }; |