Merge branch 'master.upstream' into staging.upstream

author: William A. Kennington III <william@wkennington.com> 2015-07-13 15:11:31 -0700
committer: William A. Kennington III <william@wkennington.com> 2015-07-13 15:11:31 -0700
commit: 333f145d7604f07e3b2164b459b46e075fea81f4 (patch)
tree: cb9bb91bafeafe64c97fa1054223c0d69cf18848 /pkgs
parent: d253b3d875d2bae84afbc141754b286e18e2fb7d (diff)
parent: 7e3c95a0b813394b1a41b73e078d3ffd9e951979 (diff)
download: nixlib-333f145d7604f07e3b2164b459b46e075fea81f4.tar
nixlib-333f145d7604f07e3b2164b459b46e075fea81f4.tar.gz
nixlib-333f145d7604f07e3b2164b459b46e075fea81f4.tar.bz2
nixlib-333f145d7604f07e3b2164b459b46e075fea81f4.tar.lz
nixlib-333f145d7604f07e3b2164b459b46e075fea81f4.tar.xz
nixlib-333f145d7604f07e3b2164b459b46e075fea81f4.tar.zst
nixlib-333f145d7604f07e3b2164b459b46e075fea81f4.zip
110 files changed, 2533 insertions, 1729 deletions
diff --git a/pkgs/applications/editors/emacs-modes/flycheck/default.nix b/pkgs/applications/editors/emacs-modes/flycheck/default.nix
index 98eab4d477c7..2a3c43828363 100644
--- a/pkgs/applications/editors/emacs-modes/flycheck/default.nix
+++ b/pkgs/applications/editors/emacs-modes/flycheck/default.nix
@@ -1,6 +1,6 @@
 { stdenv, fetchFromGitHub, emacs, let-alist, dash, texinfo }:
 
-stdenv.mkDerivation {
+stdenv.mkDerivation rec {
   name = "flycheck-0.22-64-g90dbc2d";
 
   src = fetchFromGitHub {
@@ -24,8 +24,8 @@ stdenv.mkDerivation {
   '';
 
   meta = {
-    homepage = "https://github.com/magit/git-modes";
-    description = "Emacs modes for various Git-related files";
+    inherit (src.meta) homepage;
+    description = "Modern on-the-fly syntax checking for GNU Emacs";
     license = stdenv.lib.licenses.gpl3Plus;
     maintainers = with stdenv.lib.maintainers; [ simons ];
   };
diff --git a/pkgs/applications/misc/bleachbit/default.nix b/pkgs/applications/misc/bleachbit/default.nix
new file mode 100644
index 000000000000..511455ba6bb0
--- /dev/null
+++ b/pkgs/applications/misc/bleachbit/default.nix
@@ -0,0 +1,34 @@
+{ stdenv, pythonPackages, fetchurl }:
+pythonPackages.buildPythonPackage rec {
+  name = "bleachbit-${version}";
+  version = "1.8";
+
+  namePrefix = "";
+
+  src = fetchurl {
+    url = "mirror://sourceforge/bleachbit/bleachbit-1.8.tar.bz2";
+    sha256 = "dbf50fcbf24b8b3dd1c4325cd62352628d089f88a76eab804df5d90c872ee592";
+  };
+
+  buildInputs = [  pythonPackages.wrapPython ];
+
+  doCheck = false;
+
+  postInstall = ''
+    mkdir -p $out/bin
+    cp bleachbit.py $out/bin/bleachbit
+    chmod +x $out/bin/bleachbit
+
+    substituteInPlace $out/bin/bleachbit --replace "#!/usr/bin/env python" "#!${pythonPackages.python.interpreter}"
+  '';
+
+  propagatedBuildInputs = with pythonPackages; [ pygtk sqlite3 ];
+
+  meta = {
+    homepage = "http://bleachbit.sourceforge.net";
+    description = "A program to clean your computer";
+    longDescription = "BleachBit helps you easily clean your computer to free space and maintain privacy.";
+    license = stdenv.lib.licenses.gpl3;
+    maintainers = with stdenv.lib.maintainers; [ leonardoce ];
+  };
+}
diff --git a/pkgs/applications/misc/blender/default.nix b/pkgs/applications/misc/blender/default.nix
index c0420d6ac675..01299dc671dd 100644
--- a/pkgs/applications/misc/blender/default.nix
+++ b/pkgs/applications/misc/blender/default.nix
@@ -10,11 +10,11 @@
 with lib;
 
 stdenv.mkDerivation rec {
-  name = "blender-2.75";
+  name = "blender-2.75a";
 
   src = fetchurl {
     url = "http://download.blender.org/source/${name}.tar.gz";
-    sha256 = "1r3qyj57g06ir424q7szxkyb6h0b7laq7f126158kgs94xpkhlsz";
+    sha256 = "09lxb2li70p6fg7hbakin9ffy3b3101c1gdjqi3pykks5q3h9sq4";
   };
 
   buildInputs =
diff --git a/pkgs/applications/misc/merkaartor/default.nix b/pkgs/applications/misc/merkaartor/default.nix
index 932e5bb48300..221b459f84aa 100644
--- a/pkgs/applications/misc/merkaartor/default.nix
+++ b/pkgs/applications/misc/merkaartor/default.nix
@@ -1,4 +1,4 @@
-{stdenv, fetchurl, qt4, boost, proj, gdal}:
+{stdenv, fetchurl, qt4, boost, proj, gdal_1_11_2}:
 
 stdenv.mkDerivation rec {
   name = "merkaartor-0.18.1";
@@ -11,7 +11,7 @@ stdenv.mkDerivation rec {
     qmake -makefile PREFIX=$out
   '';
 
-  buildInputs = [ qt4 boost proj gdal ];
+  buildInputs = [ qt4 boost proj gdal_1_11_2 ];
 
   meta = {
     description = "An openstreetmap editor";
diff --git a/pkgs/applications/misc/redshift/default.nix b/pkgs/applications/misc/redshift/default.nix
index c5095d9f9eea..244464130bea 100644
--- a/pkgs/applications/misc/redshift/default.nix
+++ b/pkgs/applications/misc/redshift/default.nix
@@ -1,45 +1,40 @@
-{ fetchurl, stdenv, libX11, libXrandr, libXxf86vm, libxcb, pkgconfig, python
-, randrproto, xcbutil, xf86vidmodeproto, autoconf, automake, gettext, glib
-, GConf, dbus, dbus_glib, makeWrapper, gtk, pygtk, pyxdg, geoclue }:
+{ fetchurl, stdenv, gettext, geoclue, intltool, makeWrapper
+, pkgconfig , python, pygobject3, pyxdg }:
 
-stdenv.mkDerivation rec {
-  version = "1.9.1";
+let version = "1.10"; in
+stdenv.mkDerivation {
   name = "redshift-${version}";
   src = fetchurl {
-    url = "https://github.com/jonls/redshift/archive/v${version}.tar.gz";
-    sha256 = "0rj7lyg4ikwpk1hr1k2bgk9gjqvvv51z8hydsgpx2k2lqdv6lqri";
+    sha256 = "19pfk9il5x2g2ivqix4a555psz8mj3m0cvjwnjpjvx0llh5fghjv";
+    url = "https://github.com/jonls/redshift/releases/download/v${version}/redshift-${version}.tar.xz";
   };
 
   buildInputs = [
-    libX11 libXrandr libXxf86vm libxcb pkgconfig python randrproto xcbutil
-    xf86vidmodeproto autoconf automake gettext glib GConf dbus dbus_glib
-    makeWrapper gtk pygtk pyxdg geoclue
+    gettext intltool makeWrapper pkgconfig python pygobject3 pyxdg
   ];
 
-  preConfigure = ''
-    ./bootstrap
-  '';
-
   preInstall = ''
-    substituteInPlace src/redshift-gtk/redshift-gtk python --replace "/usr/bin/env python" "${python}/bin/${python.executable}"
+    substituteInPlace src/redshift-gtk/redshift-gtk python \
+      --replace "/usr/bin/env python3" "${python}/bin/${python.executable}"
   '';
 /*
   postInstall = ''
-    wrapProgram "$out/bin/redshift-gtk" --prefix PYTHONPATH : $PYTHONPATH:${pygtk}/lib/${python.libPrefix}/site-packages/gtk-2.0:${pyxdg}/lib/${python.libPrefix}/site-packages/pyxdg:$out/lib/${python.libPrefix}/site-packages
+    wrapProgram "$out/bin/redshift-gtk" --prefix PYTHONPATH : $PYTHONPATH
   '';
 */
   meta = with stdenv.lib; {
-    description = "changes the color temperature of your screen gradually";
+    inherit version;
+    description = "Gradually change screen color temperature";
     longDescription = ''
       The color temperature is set according to the position of the
       sun. A different color temperature is set during night and
       daytime. During twilight and early morning, the color
       temperature transitions smoothly from night to daytime
       temperature to allow your eyes to slowly adapt.
-      '';
-    license = stdenv.lib.licenses.gpl3Plus;
+    '';
+    license = licenses.gpl3Plus;
     homepage = http://jonls.dk/redshift;
     platforms = platforms.linux;
-    maintainers = [ maintainers.mornfall ];
+    maintainers = with maintainers; [ mornfall nckx ];
   }; 
 }
diff --git a/pkgs/applications/misc/rofi/default.nix b/pkgs/applications/misc/rofi/default.nix
index 55f63d99ce29..88512deb9826 100644
--- a/pkgs/applications/misc/rofi/default.nix
+++ b/pkgs/applications/misc/rofi/default.nix
@@ -5,11 +5,11 @@
 
 stdenv.mkDerivation rec {
   name = "rofi-${version}";
-  version = "0.15.5";
+  version = "0.15.7";
 
   src = fetchurl {
     url = "https://github.com/DaveDavenport/rofi/archive/${version}.tar.gz";
-    sha256 = "16dffwxqxcx5krb6v1m6gh0r6d0a4hwl0jq4fdyblcv9xid5hxf5";
+    sha256 = "0alygwc82shkg9lmy8r5vmgd84imx1f9pndrisjpisl8h28dw5dq";
   };
 
   buildInputs = [ autoconf automake pkgconfig libX11 libXinerama libXft pango
diff --git a/pkgs/applications/misc/vifm/default.nix b/pkgs/applications/misc/vifm/default.nix
index 5ff010005e40..3852acfc9f3e 100644
--- a/pkgs/applications/misc/vifm/default.nix
+++ b/pkgs/applications/misc/vifm/default.nix
@@ -2,14 +2,14 @@
 
 let
   name = "vifm-${version}";
-  version = "0.7.8";
+  version = "0.8";
 
 in stdenv.mkDerivation {
   inherit name;
 
   src = fetchurl {
     url = "mirror://sourceforge/project/vifm/vifm/${name}.tar.bz2";
-    sha256 = "00vnkr60ci6qwh95kzx399xm97g26svxl9i0y77qv99q41nb5ysx";
+    sha256 = "1syyvdcgwnvjxzmpf9f4gfi0ipwmlavg11zr7wiz8qplvi86psv9";
   };
 
   buildInputs = [ utillinux ncurses file libX11 which groff ];
diff --git a/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer-11/default.nix b/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer-11/default.nix
index cff6f33a49dd..7eed1b9a04d4 100644
--- a/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer-11/default.nix
+++ b/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer-11/default.nix
@@ -36,7 +36,7 @@
 
 let
   # -> http://get.adobe.com/flashplayer/
-  version = "11.2.202.468";
+  version = "11.2.202.481";
 
   src =
     if stdenv.system == "x86_64-linux" then
@@ -47,7 +47,7 @@ let
       else rec {
         inherit version;
         url = "http://fpdownload.adobe.com/get/flashplayer/pdc/${version}/install_flash_player_11_linux.x86_64.tar.gz";
-        sha256 = "1vybrw5cwhl4zz9z4fy1lnvs60zz382blas7kann7wj8r4pvx0zl";
+        sha256 = "151di671xqywjif3v4hbsfw55jyd5x5qjq2zc92xw367pssi29yz";
       }
     else if stdenv.system == "i686-linux" then
       if debug then
@@ -60,7 +60,7 @@ let
       else rec {
         inherit version;
         url = "http://fpdownload.adobe.com/get/flashplayer/pdc/${version}/install_flash_player_11_linux.i386.tar.gz";
-        sha256 = "1bczdgda040nnfmr9sq4q1a0dy9zbnq76g4dsjw3md4glxkmqv8l";
+        sha256 = "05ydrw1ykp49b409bkpvizhf1bz1xmfxa7alfdnabvg90vkfvyvn";
       }
     else throw "Flash Player is not supported on this platform";
 
diff --git a/pkgs/applications/networking/cluster/panamax/ui/Gemfile.lock b/pkgs/applications/networking/cluster/panamax/ui/Gemfile.lock
index e1dfc0d4a3db..b273595bbb05 100644
--- a/pkgs/applications/networking/cluster/panamax/ui/Gemfile.lock
+++ b/pkgs/applications/networking/cluster/panamax/ui/Gemfile.lock
@@ -86,7 +86,7 @@ GEM
       railties (>= 3.2.16)
     json (1.8.2)
     kramdown (1.4.0)
-    libv8 (3.16.14.7)
+    libv8 (3.16.14.11)
     mail (2.6.3)
       mime-types (>= 1.16, < 3)
     method_source (0.8.2)
diff --git a/pkgs/applications/networking/cluster/panamax/ui/gemset.nix b/pkgs/applications/networking/cluster/panamax/ui/gemset.nix
index cfb2b6f460f0..b41b482edb73 100644
--- a/pkgs/applications/networking/cluster/panamax/ui/gemset.nix
+++ b/pkgs/applications/networking/cluster/panamax/ui/gemset.nix
@@ -332,11 +332,11 @@
       sha256 = "001vy0ymiwbvkdbb9wpqmswv6imliv7xim00gq6rlk0chnbiaq80";
     };
   };
-  "libv8" = {
-    version = "3.16.14.7";
+  libv8 = {
+    version = "3.16.14.11";
     source = {
       type = "gem";
-      sha256 = "0dv5q5n5nf6b8h3fybwmsr3vkj70w4g1jpf6661j3hsv9vp0g4qq";
+      sha256 = "000vbiy78wk5r1f6p7qncab8ldg7qw5pjz7bchn3lw700gpaacxp";
     };
   };
   "mail" = {
@@ -786,4 +786,4 @@
       "railties"
     ];
   };
-}
\ No newline at end of file
+}
diff --git a/pkgs/applications/networking/cluster/spark/default.nix b/pkgs/applications/networking/cluster/spark/default.nix
index 1852f21d27ac..1147c4b64a19 100644
--- a/pkgs/applications/networking/cluster/spark/default.nix
+++ b/pkgs/applications/networking/cluster/spark/default.nix
@@ -6,11 +6,11 @@ with stdenv.lib;
 
 stdenv.mkDerivation rec {
   name    = "spark-${version}";
-  version = "1.1.1";
+  version = "1.4.0";
 
   src = fetchurl {
-    url    = "http://d3kbcqa49mib13.cloudfront.net/${name}-bin-cdh4.tgz";
-    sha256 = "1k0lw8aq5is3gnsrm8q24s0knga6kb3c9xsca20g11fy8b0y4nvk";
+    url    = "mirror://apache/spark/${name}/${name}-bin-cdh4.tgz";
+    sha256 = "1w60xzzg9mcymin1pmqwx1mvcqmdpfyxhd2dmw5alhnrzi21ycxi";
   };
 
   buildInputs = [ makeWrapper jre pythonPackages.python pythonPackages.numpy ]
diff --git a/pkgs/applications/networking/ftp/filezilla/default.nix b/pkgs/applications/networking/ftp/filezilla/default.nix
index 98e2f6137607..2e8a28d03c87 100644
--- a/pkgs/applications/networking/ftp/filezilla/default.nix
+++ b/pkgs/applications/networking/ftp/filezilla/default.nix
@@ -1,13 +1,13 @@
 { stdenv, fetchurl, dbus, gnutls, wxGTK30, libidn, tinyxml, gettext
 , pkgconfig, xdg_utils, gtk2, sqlite }:
 
-let version = "3.11.0.2"; in
+let version = "3.12.0.2"; in
 stdenv.mkDerivation {
   name = "filezilla-${version}";
 
   src = fetchurl {
     url = "mirror://sourceforge/project/filezilla/FileZilla_Client/${version}/FileZilla_${version}_src.tar.bz2";
-    sha256 = "1nc9d46jwz3x9dd6na1ds8rq8a797xr29r9wkhgxv6y20cla06rl";
+    sha256 = "038xgvajn0nq1dzw1pac3xwhmil1y17vhadd2hx0vl4lrp16yabs";
   };
 
   configureFlags = [
diff --git a/pkgs/applications/networking/instant-messengers/blink/default.nix b/pkgs/applications/networking/instant-messengers/blink/default.nix
index c4cfc0b67760..addbc060977e 100644
--- a/pkgs/applications/networking/instant-messengers/blink/default.nix
+++ b/pkgs/applications/networking/instant-messengers/blink/default.nix
@@ -1,12 +1,13 @@
-{ stdenv, fetchurl, pythonPackages, pyqt4, cython, libvncserver, zlib, twisted, gnutls }:
+{ stdenv, fetchurl, pythonPackages, pyqt4, cython, libvncserver, zlib, twisted
+, gnutls, libvpx }:
 
 pythonPackages.buildPythonPackage rec {
   name = "blink-${version}";
-  version = "1.3.0";
+  version = "1.4.0";
   
   src = fetchurl {
     url = "http://download.ag-projects.com/BlinkQt/${name}.tar.gz";
-    sha256 = "388a0ca72ad99087cd87b78a4c449f9c079117920bfc50d7843853b8f942d045";
+    sha256 = "0vd4ky4djhrrlmfpz7g43bxjynhpql4d3s9jdirh21kc8d1bgayk";
   };
 
   patches = [ ./pythonpath.patch ];
@@ -14,17 +15,21 @@ pythonPackages.buildPythonPackage rec {
     sed -i 's|@out@|'"''${out}"'|g' blink/resources.py
   '';
 
-  propagatedBuildInputs = [ pyqt4 pythonPackages.cjson pythonPackages.sipsimple twisted ];
+  propagatedBuildInputs = with pythonPackages;[ pyqt4 cjson sipsimple twisted
+    ];
 
-  buildInputs = [ cython zlib libvncserver ];
+  buildInputs = [ cython zlib libvncserver libvpx ];
 
   postInstall = ''
     wrapProgram $out/bin/blink \
-      --prefix LD_LIBRARY_PATH : ${gnutls}/lib
+      --prefix LD_LIBRARY_PATH ":" ${gnutls}/lib
   '';
 
-  meta = {
+  meta = with stdenv.lib; {
     homepage = http://icanblink.com/;
     description = "A state of the art, easy to use SIP client";
+    platforms = platforms.linux;
+    license = licenses.mit;
+    maintainers = with maintainers; [ pSub ];
   };
 }
diff --git a/pkgs/applications/networking/mailreaders/thunderbird-bin/sources.nix b/pkgs/applications/networking/mailreaders/thunderbird-bin/sources.nix
index 66f2fa87e395..241b43bc1f1b 100644
--- a/pkgs/applications/networking/mailreaders/thunderbird-bin/sources.nix
+++ b/pkgs/applications/networking/mailreaders/thunderbird-bin/sources.nix
@@ -4,123 +4,123 @@
 # ruby generate_source.rb > source.nix
 
 {
-  version = "38.0.1";
+  version = "38.1.0";
   sources = [
-    { locale = "ar"; arch = "linux-i686"; sha1 = "b61125483c46602e64ab7c4b56ff2f9612453ad3"; }
-    { locale = "ar"; arch = "linux-x86_64"; sha1 = "4ac5de506c61fc769e6805f599cb7131b243812c"; }
-    { locale = "ast"; arch = "linux-i686"; sha1 = "07ea0b98e651e650d2f11322b5c8ce55bb083217"; }
-    { locale = "ast"; arch = "linux-x86_64"; sha1 = "b0b37462e0bb5443f408724b62421e59ae68389b"; }
-    { locale = "be"; arch = "linux-i686"; sha1 = "61feae6377bcca63225ba945b7067dad8eb5a0fa"; }
-    { locale = "be"; arch = "linux-x86_64"; sha1 = "b58385f605b7a08f17e06faa922899c42a2076c0"; }
-    { locale = "bg"; arch = "linux-i686"; sha1 = "ddbb0681076511828c91373354aa9a3861ee3943"; }
-    { locale = "bg"; arch = "linux-x86_64"; sha1 = "734acaa1870773d9ccf687e65d553797b3d00bca"; }
-    { locale = "bn-BD"; arch = "linux-i686"; sha1 = "32ad3307c919ec10bcbb9f99f8d37bb5daec5903"; }
-    { locale = "bn-BD"; arch = "linux-x86_64"; sha1 = "4e87b8ff753b1680b0b9b5149fc75238bff91c6d"; }
-    { locale = "br"; arch = "linux-i686"; sha1 = "b319d6f853311b103c439a482ee12652d751e22f"; }
-    { locale = "br"; arch = "linux-x86_64"; sha1 = "0254d1edcc2b1fbc8cec01c96482c381d34be88b"; }
-    { locale = "ca"; arch = "linux-i686"; sha1 = "deb0caf34895379b2e7dd01871c510f92ba96561"; }
-    { locale = "ca"; arch = "linux-x86_64"; sha1 = "f580f9044bb115b3077ba012fe1b3be289853911"; }
-    { locale = "cs"; arch = "linux-i686"; sha1 = "045f3d7adade1133325e6607971ec70cad85c91a"; }
-    { locale = "cs"; arch = "linux-x86_64"; sha1 = "9fc2fa5a44886db96bcdb4d23d69593954a84ca2"; }
-    { locale = "cy"; arch = "linux-i686"; sha1 = "6fb9ca5be336db1b149e4ac6e53e51fd32fbd84e"; }
-    { locale = "cy"; arch = "linux-x86_64"; sha1 = "517dfd262c4f23fba743299381f51f7863cd32d7"; }
-    { locale = "da"; arch = "linux-i686"; sha1 = "bdd5d63545fb09540a5ff8ada7d421deb865dc61"; }
-    { locale = "da"; arch = "linux-x86_64"; sha1 = "fa4f26001b4281f4bd9b741a897e1a420c40b604"; }
-    { locale = "de"; arch = "linux-i686"; sha1 = "566603c44ba6df21d7504bfb49ea235f5cb64e00"; }
-    { locale = "de"; arch = "linux-x86_64"; sha1 = "60675d5905838ac54c0c2a961d88d021c446ec50"; }
-    { locale = "dsb"; arch = "linux-i686"; sha1 = "74feac72b6ad05b00a6c4495f751f106b77b3997"; }
-    { locale = "dsb"; arch = "linux-x86_64"; sha1 = "fbb936459a2287117e5638ef78ba1d647f4be41f"; }
-    { locale = "el"; arch = "linux-i686"; sha1 = "eedbcc1df60912b2f5be83dc2459cd06914b91f5"; }
-    { locale = "el"; arch = "linux-x86_64"; sha1 = "ead82b60f2b07a63ff84ed6f35f9527c1b030c24"; }
-    { locale = "en-GB"; arch = "linux-i686"; sha1 = "17ed78e8f063f39a7c73795e9a251f187dc2a04c"; }
-    { locale = "en-GB"; arch = "linux-x86_64"; sha1 = "42f427fe628cbc182459f66a7d87d78845d50e57"; }
-    { locale = "en-US"; arch = "linux-i686"; sha1 = "9f264dbd88d96149a92601e33dbed497189b281d"; }
-    { locale = "en-US"; arch = "linux-x86_64"; sha1 = "a8df74c9655501ee9e4c876b05e14b9a2605a591"; }
-    { locale = "es-AR"; arch = "linux-i686"; sha1 = "4e467b8e662345bba07ec768055899175823764b"; }
-    { locale = "es-AR"; arch = "linux-x86_64"; sha1 = "96994e1c9b6e8d27d1b7bf91a2d0d47b25d67bcb"; }
-    { locale = "es-ES"; arch = "linux-i686"; sha1 = "db1574237be55846c386138b55beacf247cdf8b8"; }
-    { locale = "es-ES"; arch = "linux-x86_64"; sha1 = "1e474e7001a14bfba44e933cca875b10032b22fc"; }
-    { locale = "et"; arch = "linux-i686"; sha1 = "3385f3aa8432a66b4f400158ba079808a0982c6b"; }
-    { locale = "et"; arch = "linux-x86_64"; sha1 = "aad77f411f5c3a6161bbb6b80566d9065e15c8a0"; }
-    { locale = "eu"; arch = "linux-i686"; sha1 = "98820960354c89dc9e7178b3c783df733597ef27"; }
-    { locale = "eu"; arch = "linux-x86_64"; sha1 = "77c3946d778ccea30f22a08f38d5336110d87d43"; }
-    { locale = "fi"; arch = "linux-i686"; sha1 = "63c7a82cbfc8d5c52424244ccab51868aa498416"; }
-    { locale = "fi"; arch = "linux-x86_64"; sha1 = "a590ff89b5616463ce32091c09c0b74d6f6a8773"; }
-    { locale = "fr"; arch = "linux-i686"; sha1 = "4e7902977f83139926131db13731632a9c4e105c"; }
-    { locale = "fr"; arch = "linux-x86_64"; sha1 = "2d7a1e725ae2aad6dfcc2e9d891999a40a242fe9"; }
-    { locale = "fy-NL"; arch = "linux-i686"; sha1 = "fad0d47e75d9191d85d5d1e6bf2f9f4f5ec08fb2"; }
-    { locale = "fy-NL"; arch = "linux-x86_64"; sha1 = "ab42e792567affd3007848822eb26afc2bea0e94"; }
-    { locale = "ga-IE"; arch = "linux-i686"; sha1 = "3faa798e14f9acd36a120b9f4e9c961c27df825c"; }
-    { locale = "ga-IE"; arch = "linux-x86_64"; sha1 = "afe90e25771a101286365d37470f00c52a8f2392"; }
-    { locale = "gd"; arch = "linux-i686"; sha1 = "aed0d96aa093a9f168c702d4e1c39d5c6077df3b"; }
-    { locale = "gd"; arch = "linux-x86_64"; sha1 = "e3faf40265be42ca2c0412a97b4ac689c9d5d6a4"; }
-    { locale = "gl"; arch = "linux-i686"; sha1 = "1ef2f1f69c042a2aeb340df9faf9019df19dbf35"; }
-    { locale = "gl"; arch = "linux-x86_64"; sha1 = "bc026a910ea03aa795d59d81836ec5dd6efb1370"; }
-    { locale = "he"; arch = "linux-i686"; sha1 = "87a2923688d5a9eb63b8a41200ba5afc6c00d954"; }
-    { locale = "he"; arch = "linux-x86_64"; sha1 = "5067560a1a56d6cbbb163d2b73bce68451956413"; }
-    { locale = "hr"; arch = "linux-i686"; sha1 = "74605669d56d0cc6e93fecce04d52771680f39f6"; }
-    { locale = "hr"; arch = "linux-x86_64"; sha1 = "d749c4ad35a02c01e50358d11a1d7034ad402bce"; }
-    { locale = "hsb"; arch = "linux-i686"; sha1 = "1e0a75dfa4627afa34e2348c71c64501b6ebac12"; }
-    { locale = "hsb"; arch = "linux-x86_64"; sha1 = "43f703566076db2e3b08703d6e3faac336ffff88"; }
-    { locale = "hu"; arch = "linux-i686"; sha1 = "b1bc08f9fd116d022c9c2710a9e25d176a1ee2a7"; }
-    { locale = "hu"; arch = "linux-x86_64"; sha1 = "8fe7b6923d46f30ffbac5a97fe9bde7625a9bc26"; }
-    { locale = "hy-AM"; arch = "linux-i686"; sha1 = "93f2e69df2c32eb2c33d9a6bf91c00224f5de9e8"; }
-    { locale = "hy-AM"; arch = "linux-x86_64"; sha1 = "52341cf14ddb124bd591f161eb2c3c566307e6c0"; }
-    { locale = "id"; arch = "linux-i686"; sha1 = "733d6833cb71d5bd6727991c76f7907b4efeb1c9"; }
-    { locale = "id"; arch = "linux-x86_64"; sha1 = "2a5fe37753a3399ea8626615493fe3cac4b79586"; }
-    { locale = "is"; arch = "linux-i686"; sha1 = "0d1bf6bf337598d6e72762716264cb2662ab542c"; }
-    { locale = "is"; arch = "linux-x86_64"; sha1 = "5dbe72779e2c58cb0d0224e08582cfb1358fc47b"; }
-    { locale = "it"; arch = "linux-i686"; sha1 = "7bf51283965c48dad5aac2bffbd8223e83bc5c6f"; }
-    { locale = "it"; arch = "linux-x86_64"; sha1 = "2634b404ca6a9f6a3a194c911ca514311646461f"; }
-    { locale = "ja"; arch = "linux-i686"; sha1 = "82ed3c27de426361f2cb73c9a34197d2548546d5"; }
-    { locale = "ja"; arch = "linux-x86_64"; sha1 = "9e9a0eda6fd9354a06071b580686a5387ad291ec"; }
-    { locale = "ko"; arch = "linux-i686"; sha1 = "e1416907d5748d10a5b0e74c4687787e7343db57"; }
-    { locale = "ko"; arch = "linux-x86_64"; sha1 = "629ad488888ad62e60bd340e17d565af76b48337"; }
-    { locale = "lt"; arch = "linux-i686"; sha1 = "d58c886482404929c18fe25cf3aece121eb6a8e7"; }
-    { locale = "lt"; arch = "linux-x86_64"; sha1 = "e0cfc0a747aae13cf5cf54db6b72e72a5780372f"; }
-    { locale = "nb-NO"; arch = "linux-i686"; sha1 = "a2e5612b0007a11f74cb3fe330e2234d84f5d35c"; }
-    { locale = "nb-NO"; arch = "linux-x86_64"; sha1 = "eba10f9d0de6b9937f297ec742e05df53460bfec"; }
-    { locale = "nl"; arch = "linux-i686"; sha1 = "a1ce06ca18bf93ff87c91fd8677dbe06eadf1159"; }
-    { locale = "nl"; arch = "linux-x86_64"; sha1 = "180b531bf58f08d89c668b578a3c7c5380900f9f"; }
-    { locale = "nn-NO"; arch = "linux-i686"; sha1 = "484546422728623005a2d20470c7f6d06870ce96"; }
-    { locale = "nn-NO"; arch = "linux-x86_64"; sha1 = "f4526c827dcf1d0a11d38bd834807eb4b7f2923f"; }
-    { locale = "pa-IN"; arch = "linux-i686"; sha1 = "c75275e6a8a19213ea5eb063c8988634bbbe13cc"; }
-    { locale = "pa-IN"; arch = "linux-x86_64"; sha1 = "0fce05e81e0bb2bf6f7ce051cdee10ceaaaee4cb"; }
-    { locale = "pl"; arch = "linux-i686"; sha1 = "6d8657b489008122b0a3dabc3b9bb5112529ae16"; }
-    { locale = "pl"; arch = "linux-x86_64"; sha1 = "b5eff0843c96947d5aa7f7f74ec899630cb9e039"; }
-    { locale = "pt-BR"; arch = "linux-i686"; sha1 = "f2359b80b8afad50aab695d3cc14e461c21e46e3"; }
-    { locale = "pt-BR"; arch = "linux-x86_64"; sha1 = "b946a90928e0c7a389dbcf5728c08e7fc5042025"; }
-    { locale = "pt-PT"; arch = "linux-i686"; sha1 = "dbc60c45551b8db4be970efed6a397bf81d108e6"; }
-    { locale = "pt-PT"; arch = "linux-x86_64"; sha1 = "77c53b3a401dbfc930f2c5d94ebe6f1a090954e7"; }
-    { locale = "rm"; arch = "linux-i686"; sha1 = "290f420ba933251168dce7c8e588541cdec886da"; }
-    { locale = "rm"; arch = "linux-x86_64"; sha1 = "7c40435683e29fd3c7b541cd3ed2a69e39a14245"; }
-    { locale = "ro"; arch = "linux-i686"; sha1 = "93d016bd3dfbd8b7ad4d8eceb94a638f6e66e751"; }
-    { locale = "ro"; arch = "linux-x86_64"; sha1 = "2d05ef4da4eac47ee2b37d9d207a20b875ab6c3f"; }
-    { locale = "ru"; arch = "linux-i686"; sha1 = "4c80bf8509b725c861ee744676e5f8229edd9acd"; }
-    { locale = "ru"; arch = "linux-x86_64"; sha1 = "60406c09cef691b892dfffffe05d06182a0f5b03"; }
-    { locale = "si"; arch = "linux-i686"; sha1 = "f7f98b929f290a757dcd67d2f0abc09272e1524f"; }
-    { locale = "si"; arch = "linux-x86_64"; sha1 = "f73185d1c4d78247154ff4133092f12bcace0189"; }
-    { locale = "sk"; arch = "linux-i686"; sha1 = "bc78cf179d1145771bc3d76808f47c3074aa848f"; }
-    { locale = "sk"; arch = "linux-x86_64"; sha1 = "b6cd85fe49e367d36f75c89596cc6826de936c03"; }
-    { locale = "sl"; arch = "linux-i686"; sha1 = "cc7468c85efaae4ad8f3c4dd629c07420095d6b7"; }
-    { locale = "sl"; arch = "linux-x86_64"; sha1 = "51236372848448ad80210d340ba5f03b851b1434"; }
-    { locale = "sq"; arch = "linux-i686"; sha1 = "1cd44cdb36f17d922b04e6f1f31721495b30d9a8"; }
-    { locale = "sq"; arch = "linux-x86_64"; sha1 = "604de9669330503ea07e24d6f65c2586c6748730"; }
-    { locale = "sr"; arch = "linux-i686"; sha1 = "ea9f909fd9b7c9125fc109db81ed313bad19ca26"; }
-    { locale = "sr"; arch = "linux-x86_64"; sha1 = "d71c0b6d31940f24562a74b30349ecd4645b0ee9"; }
-    { locale = "sv-SE"; arch = "linux-i686"; sha1 = "0c4193b4dc6eae8b5f9515ca8a534f127ee083d8"; }
-    { locale = "sv-SE"; arch = "linux-x86_64"; sha1 = "cd254aabf8c7cf63c83bec1005ef0e9f540eed7c"; }
-    { locale = "ta-LK"; arch = "linux-i686"; sha1 = "9944dd6c0cb20bcd8f513c0cdabe62245b0212dc"; }
-    { locale = "ta-LK"; arch = "linux-x86_64"; sha1 = "7452f16a96293f871ac9ac99b37f7b855b8e2acf"; }
-    { locale = "tr"; arch = "linux-i686"; sha1 = "2036043c9edcaf3e85c2c9b33ae4166d339c3185"; }
-    { locale = "tr"; arch = "linux-x86_64"; sha1 = "6b4018c8c4f6f6161f51b1fd629fa5c0ddf452d2"; }
-    { locale = "uk"; arch = "linux-i686"; sha1 = "af09c61146d407ab2e6baa3f71ce859a246cb559"; }
-    { locale = "uk"; arch = "linux-x86_64"; sha1 = "8b41790e1c6941c1b46c1e06b21c6254fee49c51"; }
-    { locale = "vi"; arch = "linux-i686"; sha1 = "fbaee422c7746c10e2537fbc8fdf86d322e49a6c"; }
-    { locale = "vi"; arch = "linux-x86_64"; sha1 = "65d5ce60fc3848c46b88c5e7229e25f412e1d5bf"; }
-    { locale = "zh-CN"; arch = "linux-i686"; sha1 = "b865c22c6c60d21ba00a60a54a9d03a5c34254cf"; }
-    { locale = "zh-CN"; arch = "linux-x86_64"; sha1 = "648dec573c9d0f680be469bad8b38fe6d3550899"; }
-    { locale = "zh-TW"; arch = "linux-i686"; sha1 = "b3f58a6053079be6231f843f05daf481c39edf6d"; }
-    { locale = "zh-TW"; arch = "linux-x86_64"; sha1 = "bab9d483870909d705fa77bcfb9d8c08966bae50"; }
+    { locale = "ar"; arch = "linux-i686"; sha1 = "0b5babaeec839aedb879b98dc540a3c44e1c0a39"; }
+    { locale = "ar"; arch = "linux-x86_64"; sha1 = "c70e123c8e04a8366e2a96a948006caf3b084d2f"; }
+    { locale = "ast"; arch = "linux-i686"; sha1 = "a17ad952ce2ec1dfe6dc797b4377ae694930578c"; }
+    { locale = "ast"; arch = "linux-x86_64"; sha1 = "dbf6b871e6ac7a5701a5e8ce1aa1c974e43c62db"; }
+    { locale = "be"; arch = "linux-i686"; sha1 = "e7f9d73339eb55d374a172445c11da33ecff8f8f"; }
+    { locale = "be"; arch = "linux-x86_64"; sha1 = "b619fc248f8cd704eebbf92bd999949e0a0d2935"; }
+    { locale = "bg"; arch = "linux-i686"; sha1 = "09cb9ee2b5a9d25430467961657a4d60610437d2"; }
+    { locale = "bg"; arch = "linux-x86_64"; sha1 = "c8b63f07ee7ac0d2f4e18f6e401d012c8bfcceae"; }
+    { locale = "bn-BD"; arch = "linux-i686"; sha1 = "d20033996503ad6f690e8fe8f8201bf02c453c98"; }
+    { locale = "bn-BD"; arch = "linux-x86_64"; sha1 = "f8b45a57a2ed4ce232d20224afdc6c4e0338743a"; }
+    { locale = "br"; arch = "linux-i686"; sha1 = "567ac67210f34a267e53f74f31cc91131f07eaa7"; }
+    { locale = "br"; arch = "linux-x86_64"; sha1 = "9cef9f6a5fbca4e1d0bc912dddf07200f1f8f8a4"; }
+    { locale = "ca"; arch = "linux-i686"; sha1 = "346d439ea1092f3c9a7d7077bb2fe3910d672935"; }
+    { locale = "ca"; arch = "linux-x86_64"; sha1 = "b099cc648318d7826949110d75851108f8dd2669"; }
+    { locale = "cs"; arch = "linux-i686"; sha1 = "3b72f45ccd22beb2fdfbc92014b4a3ccfa80e76b"; }
+    { locale = "cs"; arch = "linux-x86_64"; sha1 = "e38710c2d1f90202813d95b2fde32fdde4d4091e"; }
+    { locale = "cy"; arch = "linux-i686"; sha1 = "12a179f42fb8c3a11fc5985667e4f604e14ba8c5"; }
+    { locale = "cy"; arch = "linux-x86_64"; sha1 = "6407a7b3cd5b4dcb306823a4085c85f960c292f9"; }
+    { locale = "da"; arch = "linux-i686"; sha1 = "9c49871f3ff4ecfe33077c6ebf05e166d19651a0"; }
+    { locale = "da"; arch = "linux-x86_64"; sha1 = "8d6299fe5998113da4c623083957a204296affd5"; }
+    { locale = "de"; arch = "linux-i686"; sha1 = "06a6c73f4a640060ae7b8aa02011558d2767acb2"; }
+    { locale = "de"; arch = "linux-x86_64"; sha1 = "8fffb7568b982c1202de754cb2a2e8fcb16910f5"; }
+    { locale = "dsb"; arch = "linux-i686"; sha1 = "31a8674c191829fa4abeb403053b8266f23b983c"; }
+    { locale = "dsb"; arch = "linux-x86_64"; sha1 = "bb86a2aafcf5d6d358eeda8e572956b90ca1e275"; }
+    { locale = "el"; arch = "linux-i686"; sha1 = "3db0fafa71f7e1fe0cc9036c343d12aa35988e04"; }
+    { locale = "el"; arch = "linux-x86_64"; sha1 = "4ddd0c373b00621fa271a1301e75930f5acc6657"; }
+    { locale = "en-GB"; arch = "linux-i686"; sha1 = "6e240781d53a1853ee5be2eee18cdcb17949a228"; }
+    { locale = "en-GB"; arch = "linux-x86_64"; sha1 = "d203791c4ce8da5d2e68a3485f3bed8933f929d3"; }
+    { locale = "en-US"; arch = "linux-i686"; sha1 = "0e4097922c16620c04bb68cd3474f813cf8c60e0"; }
+    { locale = "en-US"; arch = "linux-x86_64"; sha1 = "39bfc23dd04a59f3465e8a0b583ca72fc9bc2c8a"; }
+    { locale = "es-AR"; arch = "linux-i686"; sha1 = "82887b30873baff493688a3d9b2b8acb0e335ed1"; }
+    { locale = "es-AR"; arch = "linux-x86_64"; sha1 = "d48e6977535776e5547969c486abb68f4a7f70d2"; }
+    { locale = "es-ES"; arch = "linux-i686"; sha1 = "d9aad735745addbbe619ce51c6b793ce10a967bf"; }
+    { locale = "es-ES"; arch = "linux-x86_64"; sha1 = "c429c1b6e38523b9912d5c9ae1425a48075fb2fd"; }
+    { locale = "et"; arch = "linux-i686"; sha1 = "9fe1aaab4c8f53b4d01b1374511121a3cba3b38d"; }
+    { locale = "et"; arch = "linux-x86_64"; sha1 = "b5759e44971e09703f4112499c85347fc30a5ef1"; }
+    { locale = "eu"; arch = "linux-i686"; sha1 = "0e91e95057246a9843faca8a0c53b772f329d51d"; }
+    { locale = "eu"; arch = "linux-x86_64"; sha1 = "b5cf9660cc877d3ca6943f4d365f02f3b5eb4ffa"; }
+    { locale = "fi"; arch = "linux-i686"; sha1 = "116118d2e4540502c2b71c9d1fcf121923016d8d"; }
+    { locale = "fi"; arch = "linux-x86_64"; sha1 = "fdbefa73fb355d4a97b7be2cc7f2785757c62d72"; }
+    { locale = "fr"; arch = "linux-i686"; sha1 = "f9055260509b2bc85a7e8a95d13c90be4443054f"; }
+    { locale = "fr"; arch = "linux-x86_64"; sha1 = "a5b880cea53c7ae278f6d6bb70208d697d2aa928"; }
+    { locale = "fy-NL"; arch = "linux-i686"; sha1 = "77ca3d79ff9d8ebef0dac367b0025515663d11b0"; }
+    { locale = "fy-NL"; arch = "linux-x86_64"; sha1 = "40f3c82cc93286032facea886636e95558ecedf3"; }
+    { locale = "ga-IE"; arch = "linux-i686"; sha1 = "1ecc581714b9ee079bea5de14cffdd35cea8a253"; }
+    { locale = "ga-IE"; arch = "linux-x86_64"; sha1 = "e5c270d9f4443068ba83dd6dcd7fb1bc318a8957"; }
+    { locale = "gd"; arch = "linux-i686"; sha1 = "c6db2b2d54257eb9376a95a63a8ec630661b859f"; }
+    { locale = "gd"; arch = "linux-x86_64"; sha1 = "bb561dd4a2cd0e72f6ec8d4abd7d30505603fbdf"; }
+    { locale = "gl"; arch = "linux-i686"; sha1 = "00d3aa2504711fa89190068427e9c8c3fdb20f8e"; }
+    { locale = "gl"; arch = "linux-x86_64"; sha1 = "4f0950bf70cea56969bf044d459799d54675b0ef"; }
+    { locale = "he"; arch = "linux-i686"; sha1 = "dbfc82675022ddf4ca69bd64aedd62b7c670b6e0"; }
+    { locale = "he"; arch = "linux-x86_64"; sha1 = "7c28e93a85543021861eb9314d3661edda04b086"; }
+    { locale = "hr"; arch = "linux-i686"; sha1 = "b39ac627848ade0617430e284fed55d3ae846b8d"; }
+    { locale = "hr"; arch = "linux-x86_64"; sha1 = "3ae901876dbe64fa30969dedc1d60e092a4f7924"; }
+    { locale = "hsb"; arch = "linux-i686"; sha1 = "0d20bc9316882548fa3ce9797af3fdc95ff88cfe"; }
+    { locale = "hsb"; arch = "linux-x86_64"; sha1 = "3a94683a81a76ce73453f2b3466c256b3e3e1e66"; }
+    { locale = "hu"; arch = "linux-i686"; sha1 = "88998fc8b637cbde34c37120e637ebd1a080f75b"; }
+    { locale = "hu"; arch = "linux-x86_64"; sha1 = "374cc24a23cc80c552044c43dbc2547d9adb2661"; }
+    { locale = "hy-AM"; arch = "linux-i686"; sha1 = "1a6ad2c0d105daadf68db573871f45e6a83a8781"; }
+    { locale = "hy-AM"; arch = "linux-x86_64"; sha1 = "a43817b520218e6f5b83365bb6d5784f82fd3c61"; }
+    { locale = "id"; arch = "linux-i686"; sha1 = "be03aa731ca6385f447d21e5b089fce89abdb605"; }
+    { locale = "id"; arch = "linux-x86_64"; sha1 = "dcadd18432c9dbd31c23ba260c1b278e96620c55"; }
+    { locale = "is"; arch = "linux-i686"; sha1 = "e40cba8fb39620ac3e065e27ae9bb2756d5f0808"; }
+    { locale = "is"; arch = "linux-x86_64"; sha1 = "81d7b1212a49d3e3f4cce405bb32ab8b57b53183"; }
+    { locale = "it"; arch = "linux-i686"; sha1 = "d1719489c95ad26dee243f4b13a7a3c13c80731a"; }
+    { locale = "it"; arch = "linux-x86_64"; sha1 = "a5a86761df367d015d6b63f85db7c091be9f7557"; }
+    { locale = "ja"; arch = "linux-i686"; sha1 = "cb934acf447a20761fb61be41a5093011962ed74"; }
+    { locale = "ja"; arch = "linux-x86_64"; sha1 = "b08541d43c30c64df64f1fa9e3e444a00a1ce66b"; }
+    { locale = "ko"; arch = "linux-i686"; sha1 = "5f6b9a343ad93c969ff864775cacbf008fd5683c"; }
+    { locale = "ko"; arch = "linux-x86_64"; sha1 = "e1551063d40661de6a0067bb6d51ad0e89ad08f6"; }
+    { locale = "lt"; arch = "linux-i686"; sha1 = "9c07080670ec9f1a57aec634f81cfd73defd9ccf"; }
+    { locale = "lt"; arch = "linux-x86_64"; sha1 = "44eeb1185f75ba2a8e4a34c161161862a12dc54c"; }
+    { locale = "nb-NO"; arch = "linux-i686"; sha1 = "26d12843a80bcbe4ea8008429bd075794e9dab20"; }
+    { locale = "nb-NO"; arch = "linux-x86_64"; sha1 = "89fec10ec8be9a298fed4ae5ebda68b117ee35ad"; }
+    { locale = "nl"; arch = "linux-i686"; sha1 = "13bea7053d38cb7d00950cf4d13fe06cab33b4e7"; }
+    { locale = "nl"; arch = "linux-x86_64"; sha1 = "1c927583ab814caac16ece34156110826ddbdf37"; }
+    { locale = "nn-NO"; arch = "linux-i686"; sha1 = "1c8ca9891483fe489f26b82d5b81562223af1210"; }
+    { locale = "nn-NO"; arch = "linux-x86_64"; sha1 = "88db986d9de826407f1692c1fddc64068eb190bb"; }
+    { locale = "pa-IN"; arch = "linux-i686"; sha1 = "db25c5d46fbab8692882bf32422eb334a5790ed4"; }
+    { locale = "pa-IN"; arch = "linux-x86_64"; sha1 = "a50bf1a7277a7bbbc162a547916abae63a49becd"; }
+    { locale = "pl"; arch = "linux-i686"; sha1 = "b4500262a14c781546966bc713c1a574b29bd221"; }
+    { locale = "pl"; arch = "linux-x86_64"; sha1 = "196c388eb6bc00099196cc6774fa2fa327b36d81"; }
+    { locale = "pt-BR"; arch = "linux-i686"; sha1 = "19e5c34a64a0a2d7258f285ad3d4182e0c1859e2"; }
+    { locale = "pt-BR"; arch = "linux-x86_64"; sha1 = "cf17768842cdbfc3fb4f922655e102ace1420b4c"; }
+    { locale = "pt-PT"; arch = "linux-i686"; sha1 = "60cb1312edde3d610ba7b786f7e0030066c097fc"; }
+    { locale = "pt-PT"; arch = "linux-x86_64"; sha1 = "82535ac23e75f77767a844735b5950109ed7ef15"; }
+    { locale = "rm"; arch = "linux-i686"; sha1 = "15bdb9f7b06ad28ab5bb6a219afc2cf98bd94689"; }
+    { locale = "rm"; arch = "linux-x86_64"; sha1 = "ba4aa04ea6380d6ca9e5776806f478da3a18acf2"; }
+    { locale = "ro"; arch = "linux-i686"; sha1 = "30319593b61aa454c72e372c47c97fd98e425cfa"; }
+    { locale = "ro"; arch = "linux-x86_64"; sha1 = "364734483184c769370ca2948dc9335bfe6fe1ba"; }
+    { locale = "ru"; arch = "linux-i686"; sha1 = "5b5bf58fb96072590d4d3e9e1f7239c352910b49"; }
+    { locale = "ru"; arch = "linux-x86_64"; sha1 = "bee00bc517deaa46d5e409d80b54f19bf8133e44"; }
+    { locale = "si"; arch = "linux-i686"; sha1 = "17d313829c47fc57256181b5a916605860f5c20f"; }
+    { locale = "si"; arch = "linux-x86_64"; sha1 = "69d536b6c14b29a86503cf9d492e20318e6ca550"; }
+    { locale = "sk"; arch = "linux-i686"; sha1 = "01e1fa5218459dc6e32d7a4d51bd120bc96c3f13"; }
+    { locale = "sk"; arch = "linux-x86_64"; sha1 = "24cfbe861062ba1f3e5847b4b05c925a2db52518"; }
+    { locale = "sl"; arch = "linux-i686"; sha1 = "b01bd9bff5d31998f69cbc18c31df3798346d5bb"; }
+    { locale = "sl"; arch = "linux-x86_64"; sha1 = "ab0a0ffc3816923384f519caef4b07830526a3b1"; }
+    { locale = "sq"; arch = "linux-i686"; sha1 = "e310ae1b0f32c67ccc03097fe9917f37eca3b271"; }
+    { locale = "sq"; arch = "linux-x86_64"; sha1 = "2d746d4743ca5be9dfb082129f2527ef4453e8f8"; }
+    { locale = "sr"; arch = "linux-i686"; sha1 = "9053948612aa9de8898d7e3606eb08d855fff41a"; }
+    { locale = "sr"; arch = "linux-x86_64"; sha1 = "b3c621a120756aba91c985deb06a31051b63468f"; }
+    { locale = "sv-SE"; arch = "linux-i686"; sha1 = "ef7480dc06af7376387a27da47e49bd2e5078453"; }
+    { locale = "sv-SE"; arch = "linux-x86_64"; sha1 = "c23f9b1832ab1d0317d09017c5a39824638da921"; }
+    { locale = "ta-LK"; arch = "linux-i686"; sha1 = "eea8f9b4832b6bdc61b0cd4dedb5d78aae02c953"; }
+    { locale = "ta-LK"; arch = "linux-x86_64"; sha1 = "75f4856b28f589098599a786a242681a911ff92e"; }
+    { locale = "tr"; arch = "linux-i686"; sha1 = "5ca3104abb9636ffcd5cdf913b14f48ba2a03977"; }
+    { locale = "tr"; arch = "linux-x86_64"; sha1 = "8edb7885b506d1b4288bded01dccb00b89c929f2"; }
+    { locale = "uk"; arch = "linux-i686"; sha1 = "2776e9dc93263ac8c7cf757e0a03f71b0a3d2a9c"; }
+    { locale = "uk"; arch = "linux-x86_64"; sha1 = "7ec1dc5df673394c3e61293d92d369045a0d2bd6"; }
+    { locale = "vi"; arch = "linux-i686"; sha1 = "1582f2552bc644729ffcb0d42b405e065a56ca9c"; }
+    { locale = "vi"; arch = "linux-x86_64"; sha1 = "5e24d1ce8e6b74883dabb70dc1ac03c034e6e659"; }
+    { locale = "zh-CN"; arch = "linux-i686"; sha1 = "f8df723a211049e853628b5f2dd7240b4216871c"; }
+    { locale = "zh-CN"; arch = "linux-x86_64"; sha1 = "2cb69569638090ae09d552e95aaae40b876144e3"; }
+    { locale = "zh-TW"; arch = "linux-i686"; sha1 = "ca3790624a90e49e7271bccf3870a8da629df074"; }
+    { locale = "zh-TW"; arch = "linux-x86_64"; sha1 = "ebe6e83ee9f2fce3823d01c4900231bc00682fba"; }
   ];
 }
diff --git a/pkgs/applications/networking/mumble/default.nix b/pkgs/applications/networking/mumble/default.nix
index 4eabdadc4876..aececbb6130b 100644
--- a/pkgs/applications/networking/mumble/default.nix
+++ b/pkgs/applications/networking/mumble/default.nix
@@ -15,11 +15,11 @@ let
 in
 stdenv.mkDerivation rec {
   name = "mumble-${version}";
-  version = "1.2.9";
+  version = "1.2.10";
 
   src = fetchurl {
-    url = "mirror://sourceforge/mumble/${name}.tar.gz";
-    sha256 = "1frc6b284cl36czrsrg47mnmg1im0pjqscp877gz2rrjc62pxlab";
+    url = "https://github.com/mumble-voip/mumble/releases/download/${version}/${name}.tar.gz";
+    sha256 = "012vm0xf84x13414jlsx964c5a1nwnbn41jnspkciajlxxipldn6";
   };
 
   patches = optional jackSupport ./mumble-jack-support.patch;
diff --git a/pkgs/applications/networking/p2p/tribler/default.nix b/pkgs/applications/networking/p2p/tribler/default.nix
index 5bc228f9a6b9..fed8f8ad31ff 100644
--- a/pkgs/applications/networking/p2p/tribler/default.nix
+++ b/pkgs/applications/networking/p2p/tribler/default.nix
@@ -1,33 +1,44 @@
-{ stdenv, fetchsvn, pythonPackages, makeWrapper, nettools
+{ stdenv, fetchurl, pythonPackages, makeWrapper, nettools, libtorrentRasterbar
 , enablePlayer ? false, vlc ? null }:
 
-let rev = "25411"; in
 
-stdenv.mkDerivation {
-  name = "tribler-5.5.21-pre${rev}";
+stdenv.mkDerivation rec {
+  name = "tribler-${version}";
+  version = "v6.4.3";
 
-  src = fetchsvn {
-    url = http://svn.tribler.org/abc/branches/release-5.5.x;
-    inherit rev;
-    sha256 = "17c9svy4zjchzihk6mf0kh4lnvaxjfmgfmimyby5w0d3cwbw49zx";
+  src = fetchurl {
+    url = "https://github.com/Tribler/tribler/releases/download/${version}/Tribler-${version}.tar.xz";
+    sha256 = "1n5qi3jlby41w60zg6dvl933ypyiflq3rb0qkwhxi4b26s3vwvgr";
   };
 
-  buildInputs = [ pythonPackages.python pythonPackages.wrapPython makeWrapper ];
-
-  pythonPath =
-    [ pythonPackages.wxPython pythonPackages.curses pythonPackages.apsw
-      pythonPackages.setuptools pythonPackages.m2crypto pythonPackages.sqlite3
-    ];
+  buildInputs = [
+    pythonPackages.python
+    pythonPackages.wrapPython
+    makeWrapper
+  ];
+
+  pythonPath = [
+    libtorrentRasterbar
+    pythonPackages.wxPython
+    pythonPackages.curses
+    pythonPackages.apsw
+    pythonPackages.twisted
+    pythonPackages.gmpy
+    pythonPackages.netifaces
+    pythonPackages.pil
+    pythonPackages.pycrypto
+    pythonPackages.pyasn1
+    pythonPackages.requests
+    pythonPackages.setuptools
+    pythonPackages.m2crypto
+    pythonPackages.sqlite3
+  ];
 
   installPhase =
     ''
-      substituteInPlace Tribler/Core/NATFirewall/guessip.py \
-          --replace /bin/netstat ${nettools}/bin/netstat \
-          --replace /sbin/ifconfig ${nettools}/sbin/ifconfig
-    
       # Nasty hack; call wrapPythonPrograms to set program_PYTHONPATH.
       wrapPythonPrograms
-      
+
       mkdir -p $out/share/tribler
       cp -prvd Tribler $out/share/tribler/
 
diff --git a/pkgs/applications/networking/syncthing/default.nix b/pkgs/applications/networking/syncthing/default.nix
index 22727dcc07a2..1a3430b128fb 100644
--- a/pkgs/applications/networking/syncthing/default.nix
+++ b/pkgs/applications/networking/syncthing/default.nix
@@ -4,12 +4,12 @@ with goPackages;
 
 buildGoPackage rec {
   name = "syncthing-${version}";
-  version = "0.11.10";
+  version = "0.11.13";
   goPackagePath = "github.com/syncthing/syncthing";
   src = fetchgit {
     url = "git://github.com/syncthing/syncthing.git";
     rev = "refs/tags/v${version}";
-    sha256 = "f8260d17519ff71232ab60551b444c0138d3391426ab2ef7f9f8e4d2fdac7c40";
+    sha256 = "07045f4c24e546f4e8307acedeb5fe72b023db57bbf4d73b56d7fe2c75d694dc";
   };
 
   subPackages = [ "cmd/syncthing" ];
diff --git a/pkgs/applications/science/astronomy/stellarium/default.nix b/pkgs/applications/science/astronomy/stellarium/default.nix
index ddcf5ba71523..3af4b6e84b6b 100644
--- a/pkgs/applications/science/astronomy/stellarium/default.nix
+++ b/pkgs/applications/science/astronomy/stellarium/default.nix
@@ -2,11 +2,11 @@
 , libiconv }:
 
 stdenv.mkDerivation rec {
-  name = "stellarium-0.13.2";
+  name = "stellarium-0.13.3";
 
   src = fetchurl {
     url = "mirror://sourceforge/stellarium/${name}.tar.gz";
-    sha256 = "1asrq1v6vjzxd2zz92brdfs5f5b1qf8zwd7k2dpg3dl4shl8wwg5";
+    sha256 = "1ml6z2xda4vx61agdz54x8fw1b115gwc7rcy0zhz1jh6g5jvf0ij";
   };
 
   buildInputs = [ cmake freetype libpng mesa gettext openssl qt5.base qt5.quick1 perl libiconv ];
diff --git a/pkgs/applications/version-management/git-and-tools/git/default.nix b/pkgs/applications/version-management/git-and-tools/git/default.nix
index ee001917746f..68fd7405ee4a 100644
--- a/pkgs/applications/version-management/git-and-tools/git/default.nix
+++ b/pkgs/applications/version-management/git-and-tools/git/default.nix
@@ -9,7 +9,7 @@
 }:
 
 let
-  version = "2.4.4";
+  version = "2.4.5";
   svn = subversionClient.override { perlBindings = true; };
 in
 
@@ -18,7 +18,7 @@ stdenv.mkDerivation {
 
   src = fetchurl {
     url = "https://www.kernel.org/pub/software/scm/git/git-${version}.tar.xz";
-    sha256 = "0q02ygsk1gvn07bb7gnwrp9kr2p405fjj8arpby7851889fv2wzq";
+    sha256 = "15045v9ds1jn7csw4dijlz0ybiw3csh34l444vzgh9g0f9gmy6n3";
   };
 
   patches = [
@@ -85,6 +85,10 @@ stdenv.mkDerivation {
       # gitweb.cgi, need to patch so that it's found
       sed -i -e "s|'compressor' => \['gzip'|'compressor' => ['${gzip}/bin/gzip'|" \
           $out/share/gitweb/gitweb.cgi
+
+      # Also put git-http-backend into $PATH, so that we can use smart
+      # HTTP(s) transports for pushing
+      ln -s $out/libexec/git-core/git-http-backend $out/bin/git-http-backend
     ''
 
    + (if svnSupport then
diff --git a/pkgs/applications/version-management/gitlab/Gemfile.lock b/pkgs/applications/version-management/gitlab/Gemfile.lock
index 314884fa36ee..c7db793060ed 100644
--- a/pkgs/applications/version-management/gitlab/Gemfile.lock
+++ b/pkgs/applications/version-management/gitlab/Gemfile.lock
@@ -281,7 +281,7 @@ GEM
       addressable (~> 2.3)
     letter_opener (1.1.2)
       launchy (~> 2.2)
-    libv8 (3.16.14.3)
+    libv8 (3.16.14.11)
     listen (2.3.1)
       celluloid (>= 0.15.2)
       rb-fsevent (>= 0.9.3)
diff --git a/pkgs/applications/version-management/gitlab/gemset.nix b/pkgs/applications/version-management/gitlab/gemset.nix
index 392550daae53..21a3b8fe6dbf 100644
--- a/pkgs/applications/version-management/gitlab/gemset.nix
+++ b/pkgs/applications/version-management/gitlab/gemset.nix
@@ -1121,11 +1121,11 @@
       "launchy"
     ];
   };
-  "libv8" = {
-    version = "3.16.14.3";
+  libv8 = {
+    version = "3.16.14.11";
     source = {
       type = "gem";
-      sha256 = "1arjjbmr9zxkyv6pdrihsz1p5cadzmx8308vgfvrhm380ccgridm";
+      sha256 = "000vbiy78wk5r1f6p7qncab8ldg7qw5pjz7bchn3lw700gpaacxp";
     };
   };
   "listen" = {
@@ -2395,4 +2395,4 @@
       "nokogiri"
     ];
   };
-}
\ No newline at end of file
+}
diff --git a/pkgs/applications/virtualization/qboot/default.nix b/pkgs/applications/virtualization/qboot/default.nix
new file mode 100644
index 000000000000..e4439ec124f4
--- /dev/null
+++ b/pkgs/applications/virtualization/qboot/default.nix
@@ -0,0 +1,24 @@
+{ stdenv, fetchgit }:
+
+stdenv.mkDerivation {
+  name = "qboot-pre-release";
+
+  src = fetchgit {
+    url = "https://github.com/yangchengwork/qboot";
+    rev = "b2bdaf4c878ef34f309c8c79613fabd1b9c4bf75";
+    sha256 = "00f24125733d24713880e430f409d6ded416286d209c9fabb45541311b01cf8d";
+  };
+
+  installPhase = ''
+    mkdir -p $out
+    cp bios.bin* $out/.
+    '';
+
+  meta = {
+    description = "A simple x86 firmware for booting Linux";
+    homepage = https://github.com/bonzini/qboot;
+    license = stdenv.lib.licenses.gpl2;
+    maintainers = with stdenv.lib.maintainers; [ tstrobel ];
+    platforms = ["x86_64-linux" "i686-linux"];
+  };
+}
diff --git a/pkgs/applications/virtualization/virtualbox/default.nix b/pkgs/applications/virtualization/virtualbox/default.nix
index 31a148300346..3250dc419d1e 100644
--- a/pkgs/applications/virtualization/virtualbox/default.nix
+++ b/pkgs/applications/virtualization/virtualbox/default.nix
@@ -14,7 +14,7 @@ with stdenv.lib;
 let
   buildType = "release";
 
-  version = "4.3.28"; # changes ./guest-additions as well
+  version = "5.0.0"; # changes ./guest-additions as well
 
   forEachModule = action: ''
     for mod in \
@@ -35,13 +35,13 @@ let
   '';
 
   # See https://github.com/NixOS/nixpkgs/issues/672 for details
-  extpackRevision = "100309";
+  extpackRevision = "101573";
   extensionPack = requireFile rec {
     name = "Oracle_VM_VirtualBox_Extension_Pack-${version}-${extpackRevision}.vbox-extpack";
     # IMPORTANT: Hash must be base16 encoded because it's used as an input to
     # VBoxExtPackHelperApp!
     # Tip: see http://dlc.sun.com.edgesuite.net/virtualbox/4.3.10/SHA256SUMS
-    sha256 = "72e101d9dc5eabeb76d1ab5bd6d2f817a11c89adfe8bb72cc5d614a2eef532d1";
+    sha256 = "c357e36368883df821ed092d261890a95c75e50422b75848c40ad20984086a7a";
     message = ''
       In order to use the extension pack, you need to comply with the VirtualBox Personal Use
       and Evaluation License (PUEL) by downloading the related binaries from:
@@ -60,7 +60,7 @@ in stdenv.mkDerivation {
 
   src = fetchurl {
     url = "http://download.virtualbox.org/virtualbox/${version}/VirtualBox-${version}.tar.bz2";
-    sha256 = "e157ab76d1958ae2c56b2a3875194fbff3de82486ad0e30032fd5bd772297c31";
+    sha256 = "bb71356c8f82012c9b5ae16e12302eb111c71ae7b063ada7688fbfa8aa10c2f7";
   };
 
   buildInputs =
@@ -81,7 +81,12 @@ in stdenv.mkDerivation {
     ls kBuild/bin/linux.x86/k* tools/linux.x86/bin/* | xargs -n 1 patchelf --set-interpreter ${stdenv.glibc}/lib/ld-linux.so.2
     ls kBuild/bin/linux.amd64/k* tools/linux.amd64/bin/* | xargs -n 1 patchelf --set-interpreter ${stdenv.glibc}/lib/ld-linux-x86-64.so.2
     find . -type f -iname '*makefile*' -exec sed -i -e 's/depmod -a/:/g' {} +
-    sed -e 's@"libasound.so.2"@"${alsaLib}/lib/libasound.so.2"@g' -i src/VBox/Main/xml/Settings.cpp src/VBox/Devices/Audio/alsa_stubs.c
+    sed -i -e '
+      s@"libasound.so.2"@"${alsaLib}/lib/libasound.so.2"@g
+      ${optionalString pulseSupport ''
+      s@"libpulse.so.0"@"${libpulseaudio}/lib/libpulse.so.0"@g
+      ''}
+    ' src/VBox/Main/xml/Settings.cpp src/VBox/Devices/Audio/{alsa,pulse}_stubs.c
     export USER=nix
     set +x
   '';
diff --git a/pkgs/applications/virtualization/virtualbox/guest-additions/default.nix b/pkgs/applications/virtualization/virtualbox/guest-additions/default.nix
index 0d8560635220..b56e80eb3b67 100644
--- a/pkgs/applications/virtualization/virtualbox/guest-additions/default.nix
+++ b/pkgs/applications/virtualization/virtualbox/guest-additions/default.nix
@@ -12,7 +12,7 @@ stdenv.mkDerivation {
 
   src = fetchurl {
     url = "http://download.virtualbox.org/virtualbox/${version}/VBoxGuestAdditions_${version}.iso";
-    sha256 = "9f52e186d6c9407b2676d4b2ed1cdf96940ec129cc2bd92e54b24526271a9733";
+    sha256 = "7b61f523db7ba75aebc4c7bb0cae2da92674fa72299e4a006c5c67517f7d786b";
   };
 
   KERN_DIR = "${kernel.dev}/lib/modules/*/build";
diff --git a/pkgs/data/fonts/fira-code/default.nix b/pkgs/data/fonts/fira-code/default.nix
new file mode 100644
index 000000000000..9855738d6d6d
--- /dev/null
+++ b/pkgs/data/fonts/fira-code/default.nix
@@ -0,0 +1,31 @@
+{ stdenv, fetchurl }:
+
+stdenv.mkDerivation rec {
+  name = "fira-code-${version}";
+  version = "0.5";
+
+  src = fetchurl {
+    url = "https://github.com/tonsky/FiraCode/releases/download/${version}/FiraCode-Regular.otf";
+    sha256 = "1y2jz1v7m0q73rz9vblxgaqkgh9wpp4fp7dq21hdyfhxkk3ss6xk";
+  };
+
+  phases = [ "installPhase" ];
+
+  installPhase = ''
+    mkdir -p $out/share/fonts/opentype
+    cp -v $src $out/share/fonts/opentype/FiraCode-Regular.otf
+  '';
+
+  meta = with stdenv.lib; {
+    homepage = https://github.com/tonsky/FiraCode;
+    description = "Monospace font with programming ligatures";
+    longDescription = ''
+      Fira Code is a monospace font extending the Fira Mono font with
+      a set of ligatures for common programming multi-character
+      combinations.
+    '';
+    license = licenses.ofl;
+    maintainers = [ maintainers.rycee ];
+    platforms = platforms.all;
+  };
+}
diff --git a/pkgs/data/fonts/fira-mono/default.nix b/pkgs/data/fonts/fira-mono/default.nix
index a01f2a624249..976fb68d79f6 100644
--- a/pkgs/data/fonts/fira-mono/default.nix
+++ b/pkgs/data/fonts/fira-mono/default.nix
@@ -1,16 +1,16 @@
 { stdenv, fetchurl, unzip }:
 
 stdenv.mkDerivation rec {
-  name = "fira-mono-3.203";
+  name = "fira-mono-3.204";
 
   src = fetchurl {
-    url = http://www.carrois.com/downloads/fira_mono_3_2/FiraMonoFonts3203.zip;
-    sha256 = "0qaplpmsqys42a49x8d15ca2gqw1v6a6k2d56ja1j38dmr2qmpv4";
+    url = http://www.carrois.com/downloads/fira_mono_3_2/FiraMonoFonts3204.zip;
+    sha256 = "0pnsw7b1i5vkwq0kny4lxzly4h8rlwkj610rykhax6zayfbnz62a";
   };
 
   buildInputs = [ unzip ];
   phases = [ "unpackPhase" "installPhase" ];
-  sourceRoot = "FiraMonoFonts3203";
+  sourceRoot = "FiraMonoFonts3204";
 
   installPhase = ''
     mkdir -p $out/share/fonts/opentype
diff --git a/pkgs/data/fonts/fira/default.nix b/pkgs/data/fonts/fira/default.nix
index 6646fcb86b18..b8db1132b7c5 100644
--- a/pkgs/data/fonts/fira/default.nix
+++ b/pkgs/data/fonts/fira/default.nix
@@ -1,16 +1,16 @@
 { stdenv, fetchurl, unzip }:
 
 stdenv.mkDerivation rec {
-  name = "fira-4.103";
+  name = "fira-4.104";
 
   src = fetchurl {
-    url = http://www.carrois.com/downloads/fira_4_1/FiraFonts4103.zip;
-    sha256 = "1nw5icg3134qq2qfspvj2kclsv3965szby2lfcr65imf7lj4k52z";
+    url = http://www.carrois.com/downloads/fira_4_1/FiraFonts4104.zip;
+    sha256 = "1i8l0x2wdx4pw7j52lgy8qcx0wqj0azwjiq0wa9kg26x78bdfk2d";
   };
 
   buildInputs = [unzip];
   phases = [ "unpackPhase" "installPhase" ];
-  sourceRoot = "FiraFonts4103";
+  sourceRoot = "FiraFonts4104";
 
   installPhase = ''
     mkdir -p $out/share/fonts/opentype
diff --git a/pkgs/data/fonts/symbola/default.nix b/pkgs/data/fonts/symbola/default.nix
index 390bf9f523a4..5b2113dc57e8 100644
--- a/pkgs/data/fonts/symbola/default.nix
+++ b/pkgs/data/fonts/symbola/default.nix
@@ -1,15 +1,15 @@
 {stdenv, fetchurl, unzip }:
 
 stdenv.mkDerivation rec {
-  name = "symbola-7.21";
+  name = "symbola-8.00";
 
   src = fetchurl {
     url = "http://users.teilar.gr/~g1951d/Symbola.zip";
-    sha256 = "0sqmvq8c8wn4xq0p25gd2jfyjqi8jhiycqah19wzq1gqkaaw94nq";
+    sha256 = "07bczpl3vqdpg2gakfddhzzgpb6v2wpasv7rwqxkyg9yd9lmbr0s";
   };
   docs_pdf = fetchurl {
     url = "http://users.teilar.gr/~g1951d/Symbola.pdf";
-    sha256 = "0jjjydb6c0glfb6krvdyi9kh5bsx9gz5w66j378bdqgkrvspl0d2";
+    sha256 = "1zmq1ijl0k5hrc6vpa2xp9n1x2zrrd7ng3jwc9yf0qsi3pmkpk0p";
   };
 
   buildInputs = [ unzip ];
diff --git a/pkgs/data/fonts/unifont/default.nix b/pkgs/data/fonts/unifont/default.nix
index 6b2a4ffe9608..e6fe5afa9b16 100644
--- a/pkgs/data/fonts/unifont/default.nix
+++ b/pkgs/data/fonts/unifont/default.nix
@@ -2,16 +2,16 @@
 
 stdenv.mkDerivation rec {
   name = "unifont-${version}";
-  version = "7.0.06";
+  version = "8.0.01";
 
   ttf = fetchurl {
-    url = "http://unifoundry.com/pub/${name}/font-builds/${name}.ttf";
-    sha256 = "0qmk06rwhxs43n1xbwj14fanbih60zqli002qhy0609da24r3957";
+    url = "http://fossies.org/linux/unifont/font/precompiled/${name}.ttf";
+    sha256 = "0g4g2n024072cdrs2wjp7xmkr3i9dm52a5g9hiafxjgj5a45c8kl";
   };
 
   pcf = fetchurl {
-    url = "http://unifoundry.com/pub/${name}/font-builds/${name}.pcf.gz";
-    sha256 = "1wplig57wpc79mlqamhknn39cibg5z8dvbyibp1490ljcjs1dxdc";
+    url = "http://fossies.org/linux/unifont/font/precompiled/${name}.pcf.gz";
+    sha256 = "0mpdy2k7z9s60x8i6sbv64p9wrihfwgrw81x5yj13rl6x7zzghr8";
   };
 
   buildInputs = [ mkfontscale mkfontdir ];
diff --git a/pkgs/development/compilers/rustc/1.0.0.nix b/pkgs/development/compilers/rustc/1.0.0.nix
deleted file mode 100644
index 5bb03b592b94..000000000000
--- a/pkgs/development/compilers/rustc/1.0.0.nix
+++ /dev/null
@@ -1,16 +0,0 @@
-{ stdenv, callPackage }:
-callPackage ./generic.nix {
-  shortVersion = "1.0.0";
-  isRelease = true;
-  srcSha = "14brziw91d3r88fa1kvpvhap5ws4z8h2mas7h6k9lpsc2zl9blak";
-  snapshotHashLinux686 = "1ef82402ed16f5a6d2f87a9a62eaa83170e249ec";
-  snapshotHashLinux64 = "ef2154372e97a3cb687897d027fd51c8f2c5f349";
-  snapshotHashDarwin686 = "0310b1a970f2da7e61770fd14dbbbdca3b518234";
-  snapshotHashDarwin64 = "5f35d9c920b8083a7420ef8cf5b00d5ef3085dfa";
-  snapshotDate = "2015-03-27";
-  snapshotRev = "5520801";
-  patches = [
-    ./patches/beta.patch
-    ] ++ stdenv.lib.optional stdenv.needsPax ./patches/grsec.patch;
-  configureFlags = [ "--release-channel=stable" ];
-}
diff --git a/pkgs/development/compilers/rustc/default.nix b/pkgs/development/compilers/rustc/default.nix
new file mode 100644
index 000000000000..b61a407223c7
--- /dev/null
+++ b/pkgs/development/compilers/rustc/default.nix
@@ -0,0 +1,33 @@
+{ stdenv, callPackage }:
+callPackage ./generic.nix {
+  shortVersion = "1.1.0";
+  isRelease = true;
+  srcSha = "0lsfrclj5imxy6129ggya7rb2h04cgqq53f75z2jv40y5xk25sy8";
+
+  /* Rust is bootstrapped from an earlier built version. We need
+  to fetch these earlier versions, which vary per platform.
+  The shapshot info you want can be found at
+  https://github.com/rust-lang/rust/blob/{$shortVersion}/src/snapshots.txt
+  with the set you want at the top.
+  */
+
+  # linux-i386
+  snapshotHashLinux686 = "0bc8cffdce611fb71fd7d3d8e7cdbfaf748a4f16";
+
+  # linux-x86_64
+  snapshotHashLinux64 = "94089740e48167c5975c92c139ae9c286764012f";
+
+  # macos-i386
+  snapshotHashDarwin686 = "54cc35e76497e6e94fddf38d6e40e9d168491ddb";
+
+  # macos-x86_64
+  snapshotHashDarwin64 = "43a1c1fba0d1dfee4c2ca310d506f8f5f51b3f6f";
+
+  snapshotDate = "2015-04-27";
+  snapshotRev = "857ef6e";
+
+  patches = [
+    ./patches/beta.patch
+    ] ++ stdenv.lib.optional stdenv.needsPax ./patches/grsec.patch;
+  configureFlags = [ "--release-channel=stable" ];
+}
diff --git a/pkgs/development/compilers/rustc/generic.nix b/pkgs/development/compilers/rustc/generic.nix
index 25504dadf418..da72495ee7ad 100644
--- a/pkgs/development/compilers/rustc/generic.nix
+++ b/pkgs/development/compilers/rustc/generic.nix
@@ -62,7 +62,7 @@ let version = if isRelease then
     meta = with stdenv.lib; {
       homepage = http://www.rust-lang.org/;
       description = "A safe, concurrent, practical language";
-      maintainers = with maintainers; [ madjar cstrahan wizeman globin ];
+      maintainers = with maintainers; [ madjar cstrahan wizeman globin havvy ];
       license = [ licenses.mit licenses.asl20 ];
       platforms = platforms.linux;
     };
@@ -127,11 +127,18 @@ stdenv.mkDerivation {
       --subst-var-by "ccPath" "${stdenv.cc}/bin/cc"
     substituteInPlace src/librustc_back/archive.rs \
       --subst-var-by "arPath" "${stdenv.cc.binutils}/bin/ar"
+    substituteInPlace src/librustc_back/target/mod.rs \
+      --subst-var-by "ccPath" "${stdenv.cc}/bin/cc" \
+      --subst-var-by "arPath" "${stdenv.cc.binutils}/bin/ar"
 
     substituteInPlace src/rust-installer/gen-install-script.sh \
       --replace /bin/echo "${coreutils}/bin/echo"
     substituteInPlace src/rust-installer/gen-installer.sh \
       --replace /bin/echo "${coreutils}/bin/echo"
+
+    # Workaround for NixOS/nixpkgs#8676
+    substituteInPlace mk/rustllvm.mk \
+      --replace "\$\$(subst  /,//," "\$\$(subst /,/,"
   '';
 
   buildInputs = [ which file perl curl python27 makeWrapper git ]
diff --git a/pkgs/development/compilers/rustc/head.nix b/pkgs/development/compilers/rustc/head.nix
index 5e5b41e8b250..2e890f2fb760 100644
--- a/pkgs/development/compilers/rustc/head.nix
+++ b/pkgs/development/compilers/rustc/head.nix
@@ -1,16 +1,16 @@
 { stdenv, callPackage }:
 callPackage ./generic.nix {
-  shortVersion = "1.0.0-dev";
+  shortVersion = "2015-07-01";
   isRelease = false;
-  # src rev for master on 2015-05-13
-  srcRev = "67433c1a309d3c9457e49f15e80a2d927d165996";
-  srcSha = "0idc3nh0sfjlv7m9710azx7n6awzwj6mhw3aybsb9bbagzy2sdsg";
-  snapshotHashLinux686 = "0bc8cffdce611fb71fd7d3d8e7cdbfaf748a4f16";
-  snapshotHashLinux64 = "94089740e48167c5975c92c139ae9c286764012f";
-  snapshotHashDarwin686 = "54cc35e76497e6e94fddf38d6e40e9d168491ddb";
-  snapshotHashDarwin64 = "43a1c1fba0d1dfee4c2ca310d506f8f5f51b3f6f";
-  snapshotDate = "2015-04-27";
-  snapshotRev = "857ef6e";
+  # src rev for master on 2015-07-01
+  srcRev = "bf3c979ec";
+  srcSha = "1xp2fjffz5bwxfs37w80bdhy9lv091ps7xbnsvxid2i91rbxfrkk";
+  snapshotHashLinux686 = "a6f22e481eabf098cc65bda97bf7e434a1fcc20b";
+  snapshotHashLinux64 = "5fd8698fdfe953e6c4d86cf4fa1d5f3a0053248c";
+  snapshotHashDarwin686 = "9a273324a6b63a40f67a553029c0a9fb692ffd1f";
+  snapshotHashDarwin64 = "e5b12cb7c179fc98fa905a3c84803645d946a6ae";
+  snapshotDate = "2015-05-24";
+  snapshotRev = "ba0e1cd";
   patches = [
     ./patches/head.patch
   ] ++ stdenv.lib.optional stdenv.needsPax ./patches/grsec.patch;
diff --git a/pkgs/development/compilers/rustc/patches/head.patch b/pkgs/development/compilers/rustc/patches/head.patch
index cd2320e84dfe..d7bede68682b 100644
--- a/pkgs/development/compilers/rustc/patches/head.patch
+++ b/pkgs/development/compilers/rustc/patches/head.patch
@@ -1,49 +1,20 @@
-diff --git a/src/etc/local_stage0.sh b/src/etc/local_stage0.sh
-index ca59b1c..65ee7bf 100755
---- a/src/etc/local_stage0.sh
-+++ b/src/etc/local_stage0.sh
-@@ -50,11 +50,6 @@ if [ -z $TARG_DIR ]; then
- fi
- 
- cp ${PREFIX}/bin/rustc${BIN_SUF} ${TARG_DIR}/stage0/bin/
--cp ${PREFIX}/${LIB_DIR}/${RUSTLIBDIR}/${TARG_DIR}/${LIB_DIR}/* ${TARG_DIR}/stage0/${LIB_DIR}/
--cp ${PREFIX}/${LIB_DIR}/${LIB_PREFIX}extra*${LIB_SUF} ${TARG_DIR}/stage0/${LIB_DIR}/
--cp ${PREFIX}/${LIB_DIR}/${LIB_PREFIX}rust*${LIB_SUF} ${TARG_DIR}/stage0/${LIB_DIR}/
--cp ${PREFIX}/${LIB_DIR}/${LIB_PREFIX}std*${LIB_SUF} ${TARG_DIR}/stage0/${LIB_DIR}/
--cp ${PREFIX}/${LIB_DIR}/${LIB_PREFIX}syntax*${LIB_SUF} ${TARG_DIR}/stage0/${LIB_DIR}/
- 
- # do not fail if one of the above fails, as all we need is a working rustc!
- exit 0
-diff --git a/src/librustc_back/archive.rs b/src/librustc_back/archive.rs
-index 9f5751c..c98828f 100644
---- a/src/librustc_back/archive.rs
-+++ b/src/librustc_back/archive.rs
-@@ -57,7 +57,7 @@ fn run_ar(handler: &ErrorHandler, maybe_ar_prog: &Option<String>,
-           paths: &[&Path]) -> Output {
-     let ar = match *maybe_ar_prog {
-         Some(ref ar) => &ar[..],
--        None => "ar"
-+        None => "@arPath@"
-     };
-     let mut cmd = Command::new(ar);
- 
-diff --git a/src/librustc_trans/back/link.rs b/src/librustc_trans/back/link.rs
-index ad77735..1764f71 100644
---- a/src/librustc_trans/back/link.rs
-+++ b/src/librustc_trans/back/link.rs
-@@ -360,8 +360,8 @@ pub fn mangle_internal_name_by_path_and_seq(path: PathElems, flav: &str) -> Stri
- 
- pub fn get_cc_prog(sess: &Session) -> String {
-     match sess.opts.cg.linker {
--        Some(ref linker) => return linker.to_string(),
--        None => sess.target.target.options.linker.clone(),
-+        Some(ref linker) => linker.to_string(),
-+        None => "@ccPath@".to_string(),
-     }
- }
- 
+diff --git a/src/librustc_back/target/mod.rs b/src/librustc_back/target/mod.rs
+index a42f861..bda4bde 100644
+--- a/src/librustc_back/target/mod.rs
++++ b/src/librustc_back/target/mod.rs
+@@ -172,8 +172,8 @@ impl Default for TargetOptions {
+     /// incomplete, and if used for compilation, will certainly not work.
+     fn default() -> TargetOptions {
+         TargetOptions {
+-            linker: "cc".to_string(),
+-            ar: "ar".to_string(),
++            linker: "@ccPath@".to_string(), // ignore-tidy-linelength
++            ar: "@arPath@".to_string(), // ignore-tidy-linelength
+             pre_link_args: Vec::new(),
+             post_link_args: Vec::new(),
+             cpu: "generic".to_string(),
 diff --git a/src/test/run-pass/issue-20797.rs b/src/test/run-pass/issue-20797.rs
-index 8b5e6f8..480ad79 100644
+index 2772fc8..3d37b08 100644
 --- a/src/test/run-pass/issue-20797.rs
 +++ b/src/test/run-pass/issue-20797.rs
 @@ -97,7 +97,7 @@ impl<S: Strategy> Iterator for Subpaths<S> {
diff --git a/pkgs/development/coq-modules/fiat/default.nix b/pkgs/development/coq-modules/fiat/default.nix
index df4ea133cd9c..e084497cbf81 100644
--- a/pkgs/development/coq-modules/fiat/default.nix
+++ b/pkgs/development/coq-modules/fiat/default.nix
@@ -14,7 +14,7 @@ stdenv.mkDerivation rec {
   propagatedBuildInputs = [ coq ];
 
   enableParallelBuilding = false;
-  doCheck = true;
+  doCheck = !stdenv.isi686;
 
   unpackPhase = ''
     mkdir fiat
diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix
index 75e47e7ce77f..a59219786c98 100644
--- a/pkgs/development/haskell-modules/configuration-common.nix
+++ b/pkgs/development/haskell-modules/configuration-common.nix
@@ -14,7 +14,7 @@ self: super: {
   # Break infinite recursions.
   Dust-crypto = dontCheck super.Dust-crypto;
   hasql-postgres = dontCheck super.hasql-postgres;
-  hspec-expectations = dontCheck super.hspec-expectations;
+  hspec = super.hspec.override { stringbuilder = dontCheck super.stringbuilder; };
   HTTP = dontCheck super.HTTP;
   mwc-random = dontCheck super.mwc-random;
   nanospec = dontCheck super.nanospec;
@@ -88,9 +88,6 @@ self: super: {
   yices-easy = dontDistribute super.yices-easy;
   yices-painless = dontDistribute super.yices-painless;
 
-  # The test suite refers to its own library with an invalid version constraint.
-  presburger = dontCheck super.presburger;
-
   # Won't find it's header files without help.
   sfml-audio = appendConfigureFlag super.sfml-audio "--extra-include-dirs=${pkgs.openal}/include/AL";
 
@@ -112,9 +109,6 @@ self: super: {
   # https://github.com/haskell/time/issues/23
   time_1_5_0_1 = dontCheck super.time_1_5_0_1;
 
-  # Cannot compile its own test suite: https://github.com/haskell/network-uri/issues/10.
-  network-uri = dontCheck super.network-uri;
-
   # Help libconfig find it's C language counterpart.
   libconfig = (dontCheck super.libconfig).override { config = pkgs.libconfig; };
 
@@ -241,9 +235,6 @@ self: super: {
   # https://github.com/haskell/bytestring/issues/41
   bytestring_0_10_6_0 = dontCheck super.bytestring_0_10_6_0;
 
-  # https://github.com/zmthy/http-media/issues/6
-  http-media = dontCheck super.http-media;
-
   # tests don't compile for some odd reason
   jwt = dontCheck super.jwt;
 
@@ -635,10 +626,6 @@ self: super: {
   # https://code.google.com/p/linux-music-player/issues/detail?id=1
   mp = markBroken super.mp;
 
-  # Depends on broken lmdb package.
-  vcache = markBroken super.vcache;
-  vcache-trie = markBroken super.vcache-trie;
-
   # https://github.com/afcowie/http-streams/issues/80
   http-streams = dontCheck super.http-streams;
 
@@ -893,10 +880,6 @@ self: super: {
   # https://github.com/yesodweb/serversession/issues/1
   serversession = dontCheck super.serversession;
 
-  # https://github.com/singpolyma/wai-session/issues/8
-  wai-session = markBroken super.wai-session;
-  serversession-frontend-wai = dontDistribute super.serversession-frontend-wai;
-
   yesod-bin = if pkgs.stdenv.isDarwin
     then addBuildDepend super.yesod-bin pkgs.darwin.apple_sdk.frameworks.Cocoa
     else super.yesod-bin;
diff --git a/pkgs/development/haskell-modules/hackage-packages.nix b/pkgs/development/haskell-modules/hackage-packages.nix
index 8c8dc0961ab7..a522133b721b 100644
--- a/pkgs/development/haskell-modules/hackage-packages.nix
+++ b/pkgs/development/haskell-modules/hackage-packages.nix
@@ -2529,8 +2529,8 @@ self: {
      }:
      mkDerivation {
        pname = "ClustalParser";
-       version = "1.1.2";
-       sha256 = "03bkhffbzypcrcssa8hhy23rwxjg5b3qf0j1xwssqar34lp465vi";
+       version = "1.1.3";
+       sha256 = "1xblyxmwbhmfkm2d2a87qnryk6mg5n1zarzr9d3xjh9qx3mbbclb";
        isLibrary = true;
        isExecutable = true;
        buildDepends = [ base cmdargs either-unwrap parsec vector ];
@@ -3093,13 +3093,12 @@ self: {
      }) {};
 
   "DCFL" = callPackage
-    ({ mkDerivation, base, HUnit, random }:
+    ({ mkDerivation, base, deepseq, HUnit, parallel, random }:
      mkDerivation {
        pname = "DCFL";
-       version = "0.1.0.0";
-       sha256 = "0nq2nihvgn84ijd9y41a42wl05wwqb70k1r63yfbm6qbmlzw6vns";
-       buildDepends = [ base HUnit random ];
-       jailbreak = true;
+       version = "0.1.6.0";
+       sha256 = "10f0c3y0y39rmvvvrvz426srb18wsv4qfzzx9r9zjac2m14b96jx";
+       buildDepends = [ base deepseq HUnit parallel random ];
        homepage = "https://github.com/Poincare/DCFL";
        description = "Communication Free Learning-based constraint solver";
        license = stdenv.lib.licenses.mit;
@@ -4945,8 +4944,8 @@ self: {
      }:
      mkDerivation {
        pname = "Frames";
-       version = "0.1.0.0";
-       sha256 = "1c154mv72nc81qghz3fmcymh2zlixpqhafibdmh0vl4srf0jzqcr";
+       version = "0.1.1.1";
+       sha256 = "117nqwvxbvcdnma582801im0fp2bg129m0cick43qa7cn9ky1drz";
        isLibrary = true;
        isExecutable = true;
        buildDepends = [
@@ -5067,8 +5066,8 @@ self: {
     ({ mkDerivation, base, libX11, mesa, OpenGL }:
      mkDerivation {
        pname = "GLFW";
-       version = "0.5.2.2";
-       sha256 = "0yqvfkg9p5h5bv3ak6b89am9kan9lbcq26kg1wk53xl6mz1aaijf";
+       version = "0.5.2.4";
+       sha256 = "1aac9xz943h3jjbx22kmvzmbzqw7k6cl2qsh1kr4nnx83pxrxz28";
        buildDepends = [ base OpenGL ];
        extraLibraries = [ libX11 mesa ];
        homepage = "http://haskell.org/haskellwiki/GLFW";
@@ -7854,8 +7853,8 @@ self: {
      }:
      mkDerivation {
        pname = "HaskellNet";
-       version = "0.4.4";
-       sha256 = "0df5q28y1x5irnzm5ma65b6ny6dds0375bzj6xczsw6xrlxaj3br";
+       version = "0.4.5";
+       sha256 = "1d34zknk8knjsw1w3bl91z8qc47vqb6mhfh6rq1rm93na616i3p5";
        buildDepends = [
          array base base64-string bytestring cryptohash mime-mail mtl
          network old-time pretty text
@@ -8990,8 +8989,8 @@ self: {
      }:
      mkDerivation {
        pname = "JsonGrammar";
-       version = "1.0.1";
-       sha256 = "0y29199vjs1rxpsl0af66696y1awfhslqq30x4ps2ajs9zhhfkn2";
+       version = "1.0.2";
+       sha256 = "0baywdqdj0r73rfxm5zk51bgsl014s19j01wnzarfbhak8cpwcdf";
        buildDepends = [
          aeson attoparsec base bytestring containers hashable
          language-typescript mtl semigroups stack-prism template-haskell
@@ -9001,7 +9000,6 @@ self: {
          aeson base HUnit language-typescript stack-prism test-framework
          test-framework-hunit text
        ];
-       jailbreak = true;
        homepage = "https://github.com/MedeaMelana/JsonGrammar2";
        description = "Combinators for bidirectional JSON parsing";
        license = stdenv.lib.licenses.bsd3;
@@ -11428,14 +11426,13 @@ self: {
      }:
      mkDerivation {
        pname = "OpenSCAD";
-       version = "0.3.0.1";
-       sha256 = "1cczhagc77rfdpwf6x993rdwmmgssph4dlr87dq1mnwh0ixhf33j";
+       version = "0.3.0.2";
+       sha256 = "04b7n6905qvvz8az8zhsjjg8jcf71y5yby7svy2mqzavq2azjm8x";
        buildDepends = [ base colour containers filepath semigroups ];
        testDepends = [
          base Cabal colour containers deepseq filepath HUnit semigroups
          tasty tasty-hunit testpack
        ];
-       jailbreak = true;
        homepage = "https://chiselapp.com/user/mwm/repository/OpenSCAD/";
        description = "ADT wrapper and renderer for OpenSCAD models";
        license = stdenv.lib.licenses.bsd3;
@@ -15022,6 +15019,18 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "Updater" = callPackage
+    ({ mkDerivation, base, stm }:
+     mkDerivation {
+       pname = "Updater";
+       version = "0.1";
+       sha256 = "0wd6ydj6s44mxncg817f9ar4cwxjxakb9m5a4p6yxhzgkwcl7hp2";
+       buildDepends = [ base stm ];
+       homepage = "https://github.com/yokto/Updater";
+       description = "Monadic FRP library based on stm";
+       license = stdenv.lib.licenses.asl20;
+     }) {};
+
   "UrlDisp" = callPackage
     ({ mkDerivation, base, cgi, MaybeT, mtl }:
      mkDerivation {
@@ -15068,8 +15077,8 @@ self: {
      }:
      mkDerivation {
        pname = "VKHS";
-       version = "0.5.3";
-       sha256 = "06wjfnmws68mgflszsrd5f4g9x1vihvn8srym9ixgfv51m9hzl24";
+       version = "0.5.4";
+       sha256 = "0621x6mqa1qplswirxnzpzn24520qvl5ii1wyvqm8nfb69sbqzpg";
        isLibrary = true;
        isExecutable = true;
        buildDepends = [
@@ -15176,8 +15185,8 @@ self: {
     ({ mkDerivation, base, hspec, parsec, process }:
      mkDerivation {
        pname = "ViennaRNAParser";
-       version = "1.2.2";
-       sha256 = "19ck0rgf4zxvk11zhfd0sbvjqln11cg4bzfp5z8zbqdnywhiqinw";
+       version = "1.2.4";
+       sha256 = "0gjn6sb7njd1mp211f3vk7ishc0fawl2npaq4np81pls7i24va8g";
        buildDepends = [ base parsec process ];
        testDepends = [ base hspec parsec ];
        description = "Libary for parsing ViennaRNA package output";
@@ -17131,6 +17140,7 @@ self: {
        testDepends = [
          base lens linear QuickCheck semigroupoids semigroups vector
        ];
+       jailbreak = true;
        description = "Abstractions for animation";
        license = stdenv.lib.licenses.bsd3;
      }) {};
@@ -18301,8 +18311,8 @@ self: {
     ({ mkDerivation, base, uglymemo, vector }:
      mkDerivation {
        pname = "align";
-       version = "0.1.0.0";
-       sha256 = "038zc4c9s0fpga1rpacmv5qvarn43lkhmkpcx6waxxa6gqnpv8i5";
+       version = "0.1.1.0";
+       sha256 = "02rgg0haaj9c4xlk351kz6l2lqa9mdrm9rjgxbh5hm43shriiffw";
        buildDepends = [ base uglymemo vector ];
        description = "Sequence alignment algorithms";
        license = stdenv.lib.licenses.bsd3;
@@ -18592,10 +18602,9 @@ self: {
     ({ mkDerivation, base, composition }:
      mkDerivation {
        pname = "altcomposition";
-       version = "0.2.1.0";
-       sha256 = "1j1kh4wylndyz0zs70v63x5gdhbwa9gpkn1vm108bhhjy79rgmnh";
+       version = "0.2.2.0";
+       sha256 = "0893802bwdmywl5jh5d6mdf7l4h4qyc5y53mp39xc5lx6dsiq1d9";
        buildDepends = [ base composition ];
-       jailbreak = true;
        homepage = "https://github.com/jcristovao/altcomposition";
        description = "Alternative combinators for unorthodox function composition";
        license = stdenv.lib.licenses.bsd3;
@@ -20058,9 +20067,9 @@ self: {
      mkDerivation {
        pname = "apiary-logger";
        version = "1.4.0";
-       revision = "2";
+       revision = "3";
        sha256 = "0pf030sn4mf05avl11hs9kz6qi9667s2vavn3wsxp1anl9bghk48";
-       editedCabalFile = "ce71ccd5e0a1f20777b17efdc536aab8f43a3468f54fa14609c635aa731ce944";
+       editedCabalFile = "03f6b1ac0e588631c2deed8459e527f935a74a86c15455c3f509270ba5bbd5f7";
        buildDepends = [
          apiary base data-default-class fast-logger lifted-base
          monad-control monad-logger transformers transformers-base
@@ -20411,8 +20420,8 @@ self: {
      }:
      mkDerivation {
        pname = "approximate";
-       version = "0.2.2";
-       sha256 = "1ym9f9vr83ks9lrdl54jaxw3ds2n943m6kqafwnzyypigcj3psxq";
+       version = "0.2.2.1";
+       sha256 = "1h09257l7rfy64fiwr4d1jyq6vcfhly3hrn314rkfp6rkzxpvh79";
        buildDepends = [
          base binary bytes cereal comonad deepseq ghc-prim hashable
          hashable-extras lens log-domain pointed safecopy semigroupoids
@@ -21554,8 +21563,8 @@ self: {
      }:
      mkDerivation {
        pname = "atom-basic";
-       version = "0.0.1.1";
-       sha256 = "0i39rnrfpq4k2p107grhhv0rka8qpd9bb7pvhrbks1m2dxb6pq2v";
+       version = "0.2.1";
+       sha256 = "1i3qjjn15h6n642b8prahd99fb9la2j4f0ci110bs8jydmacs36m";
        buildDepends = [
          base base64-bytestring bytestring network network-uri old-locale
          text time
@@ -21655,15 +21664,15 @@ self: {
      }:
      mkDerivation {
        pname = "atomic-write";
-       version = "0.2.0.3";
-       sha256 = "0hs157shwaqhqbd063wmfb8amkf2kppg7k4j0lhfflq1gzjbsprm";
+       version = "0.2.0.4";
+       sha256 = "1y09vyxv1fdlkzz7r27snrjhi19msqj06cjdwy7mgbjb6v7z46w9";
        buildDepends = [
          base bytestring directory filepath temporary text unix-compat
        ];
        testDepends = [
          base bytestring directory filepath hspec temporary text unix-compat
        ];
-       jailbreak = true;
+       homepage = "https://github.com/stackbuilders/atomic-write";
        description = "Atomically write to a file";
        license = stdenv.lib.licenses.mit;
      }) {};
@@ -21735,16 +21744,16 @@ self: {
      }:
      mkDerivation {
        pname = "attoparsec";
-       version = "0.13.0.0";
-       sha256 = "12b4xi6nlnhpwz8apn4mk880mkhcv1sfvf4j3z1h5dgkadi2zgbi";
+       version = "0.13.0.1";
+       sha256 = "0cprkr7bl4lrr80pz8mryb4rbfwdgpsrl7g0fbcaybhl8p5hm26f";
        buildDepends = [
          array base bytestring containers deepseq scientific text
          transformers
        ];
        testDepends = [
-         array base bytestring deepseq QuickCheck quickcheck-unicode
-         scientific test-framework test-framework-quickcheck2 text
-         transformers vector
+         array base bytestring containers deepseq QuickCheck
+         quickcheck-unicode scientific test-framework
+         test-framework-quickcheck2 text transformers vector
        ];
        homepage = "https://github.com/bos/attoparsec";
        description = "Fast combinator parsing for bytestrings and text";
@@ -22131,8 +22140,8 @@ self: {
     ({ mkDerivation, base }:
      mkDerivation {
        pname = "auto-update";
-       version = "0.1.2.1";
-       sha256 = "0cj1pjf22x02h3d1ln1p69g90kz2dfsiq04ahfq29jj4ny525lwp";
+       version = "0.1.2.2";
+       sha256 = "1ns4c5mqhnm7hsiqxf1ivjs5fflyq92b16ldzrcl0p85631h0c3v";
        buildDepends = [ base ];
        homepage = "https://github.com/yesodweb/wai";
        description = "Efficiently run periodic, on-demand actions";
@@ -22889,8 +22898,8 @@ self: {
      }:
      mkDerivation {
        pname = "b9";
-       version = "0.5.7";
-       sha256 = "1ffj3ql27826dv20pz98xg3wsaylfsrwgggwxwipw6l2jypk3z7i";
+       version = "0.5.8";
+       sha256 = "0r8gjgmy9v655kza2c6ilngr4glijizgjddq0125s11pd40hzhvi";
        isLibrary = true;
        isExecutable = true;
        buildDepends = [
@@ -23557,6 +23566,21 @@ self: {
        license = "unknown";
      }) {};
 
+  "base91" = callPackage
+    ({ mkDerivation, base, bytestring, QuickCheck, text }:
+     mkDerivation {
+       pname = "base91";
+       version = "0.2.0";
+       sha256 = "10pa2gz9kwp0a4h7kzgnhbf2v897lpq5n5v927adlav9kqc1i41y";
+       isLibrary = true;
+       isExecutable = true;
+       buildDepends = [ base bytestring text ];
+       testDepends = [ base bytestring QuickCheck text ];
+       homepage = "https://github.com/ajg/base91";
+       description = "A Base91 Encoder & Decoder";
+       license = stdenv.lib.licenses.mit;
+     }) {};
+
   "bash" = callPackage
     ({ mkDerivation, base, binary, bytestring, containers
      , hxt-regex-xmlschema, mtl, SHA, shell-escape
@@ -24315,6 +24339,21 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "bimap-server" = callPackage
+    ({ mkDerivation, aeson, base, bimap, binary, directory, http-types
+     , unix, wai, warp
+     }:
+     mkDerivation {
+       pname = "bimap-server";
+       version = "0.1.0.1";
+       sha256 = "0dgmiv1pzzrq22778a2l46knxfk5rh2vw331gcqhxx0jb23d3pq9";
+       buildDepends = [
+         aeson base bimap binary directory http-types unix wai warp
+       ];
+       description = "Two-column database server";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "bimaps" = callPackage
     ({ mkDerivation, aeson, base, binary, cereal, containers, deepseq
      , hashable, primitive, QuickCheck, storable-tuple
@@ -27799,20 +27838,29 @@ self: {
      }:
      mkDerivation {
        pname = "bytes";
-       version = "0.15";
-       revision = "1";
-       sha256 = "0898qlpf74ax33hm6hbla9kcjrldk26sc5yj3gdp99yb3qb5swz6";
-       editedCabalFile = "94dc3ad697fbfd70c7cf77a2e0c9bf4307a0f396012738537b931fc3b4e58386";
+       version = "0.15.0.1";
+       sha256 = "1qlqih83bx2vh5g15wffh4v9cfb5lv6jkj6i1xncd2imw5ynfi08";
        buildDepends = [
          base binary bytestring cereal containers mtl text time transformers
          transformers-compat void
        ];
        testDepends = [ base directory doctest filepath ];
-       homepage = "http://github.com/analytics/bytes";
+       homepage = "https://github.com/ekmett/bytes";
        description = "Sharing code for serialization between binary and cereal";
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "byteset" = callPackage
+    ({ mkDerivation, base, binary }:
+     mkDerivation {
+       pname = "byteset";
+       version = "0.1.1.0";
+       sha256 = "18dg863wbbjh95yial4gy6vi5spwygp0l7dfx6bj00lz4xdrqj8k";
+       buildDepends = [ base binary ];
+       description = "Set of bytes";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "bytestring_0_10_6_0" = callPackage
     ({ mkDerivation, base, byteorder, deepseq, directory, dlist
      , ghc-prim, HUnit, integer-gmp, mtl, QuickCheck, random
@@ -27880,8 +27928,8 @@ self: {
      }:
      mkDerivation {
        pname = "bytestring-conversion";
-       version = "0.3.0";
-       sha256 = "0wc5k0cis3hkd5hq875sbj39bf9c0gayyjmg638pnbc8x6v44fqm";
+       version = "0.3.1";
+       sha256 = "1y2fhwz632sp7n0iw87lz2g8vks4jgxz2kw99kysgivxfd4fmdqk";
        buildDepends = [
          attoparsec base bytestring case-insensitive double-conversion text
        ];
@@ -27890,7 +27938,7 @@ self: {
        ];
        homepage = "https://github.com/twittner/bytestring-conversion/";
        description = "Type-classes to convert values to and from ByteString";
-       license = "unknown";
+       license = stdenv.lib.licenses.mpl20;
      }) {};
 
   "bytestring-csv" = callPackage
@@ -30709,8 +30757,8 @@ self: {
      }:
      mkDerivation {
        pname = "cgrep";
-       version = "6.4.15";
-       sha256 = "1i01a4d835yqry9xz10ch4b0522avd1cwp18gf2capmcx49rllvq";
+       version = "6.4.16";
+       sha256 = "0mvd80gn6z8iyy8y43drjzmq479zh2zsz3swmlmgvmbvsb1kchlb";
        isLibrary = false;
        isExecutable = true;
        buildDepends = [
@@ -33016,8 +33064,8 @@ self: {
      }:
      mkDerivation {
        pname = "codecov-haskell";
-       version = "0.3.0";
-       sha256 = "0rvjplgrn5s4jg861gg2zx92lsb1p5qqwpnwzhz27ascvby978pf";
+       version = "0.4.0.2";
+       sha256 = "0y1vv9iayjvikjfp4y41m4gypybxd1lq3pv4154nvbjpfapmndsw";
        isLibrary = true;
        isExecutable = true;
        buildDepends = [
@@ -34034,12 +34082,11 @@ self: {
      }:
      mkDerivation {
        pname = "conceit";
-       version = "0.3.1.0";
-       sha256 = "1nllcnwjzf7brsmgrrqfil0fppqinysmwcpr1k5ralrhaabwk64l";
+       version = "0.3.2.0";
+       sha256 = "16pj90dnjn5v16ym2gglx895c9lc5qhrry4wydqyn4f0j7rm6drg";
        buildDepends = [
          base bifunctors exceptions mtl semigroupoids transformers void
        ];
-       jailbreak = true;
        description = "Concurrent actions that may fail";
        license = stdenv.lib.licenses.bsd3;
      }) {};
@@ -36146,8 +36193,8 @@ self: {
     ({ mkDerivation, array, base, containers, parallel }:
      mkDerivation {
        pname = "cpsa";
-       version = "2.5.0";
-       sha256 = "1pdcpgfxba55sg19awcds8l6lw48waaz4dh43dlyb666hmhb2adh";
+       version = "2.5.1";
+       sha256 = "1lgscv3jkfzr35fwx7aymsgjg3i3sszxdc0hxmrbna8ba509cizk";
        isLibrary = false;
        isExecutable = true;
        buildDepends = [ array base containers parallel ];
@@ -36222,8 +36269,8 @@ self: {
      }:
      mkDerivation {
        pname = "cql";
-       version = "3.0.3";
-       sha256 = "0bqr28rg7cacg2qypid6jpdxq273qafn3k5z6kgaksy7db69zxym";
+       version = "3.0.4";
+       sha256 = "0b4yfmfxb4j039s5il321bc65dmbcbxqvaiqk97ly4fcc8pmdld9";
        buildDepends = [
          base bytestring cereal Decimal iproute network template-haskell
          text time transformers uuid
@@ -36234,7 +36281,7 @@ self: {
        ];
        homepage = "https://github.com/twittner/cql/";
        description = "Cassandra CQL binary protocol";
-       license = "unknown";
+       license = stdenv.lib.licenses.mpl20;
      }) {};
 
   "cql-io" = callPackage
@@ -36246,8 +36293,8 @@ self: {
      }:
      mkDerivation {
        pname = "cql-io";
-       version = "0.14.3";
-       sha256 = "1yg1w4lbfjdj3hfsg8zvr4ajq5v0byvysmwl50355jppmxvgacrn";
+       version = "0.14.4";
+       sha256 = "09nkp0c8brh87x93ib5ss010kh2izzs05ad7gmf7q54zw6qxask2";
        buildDepends = [
          async auto-update base bytestring containers cql cryptohash
          data-default-class exceptions hashable iproute lens monad-control
@@ -37183,27 +37230,6 @@ self: {
      }:
      mkDerivation {
        pname = "cryptonite";
-       version = "0.4";
-       sha256 = "0328nvw9k8bf6kc1h3kkhxgb1f4k5ay20439zszmlag6i3c3x9v2";
-       buildDepends = [
-         base bytestring deepseq ghc-prim integer-gmp memory
-       ];
-       testDepends = [
-         base byteable bytestring memory tasty tasty-hunit tasty-kat
-         tasty-quickcheck
-       ];
-       homepage = "https://github.com/vincenthz/cryptonite";
-       description = "Cryptography Primitives sink";
-       license = stdenv.lib.licenses.bsd3;
-     }) {};
-
-  "cryptonite_0_5" = callPackage
-    ({ mkDerivation, base, byteable, bytestring, deepseq, ghc-prim
-     , integer-gmp, memory, tasty, tasty-hunit, tasty-kat
-     , tasty-quickcheck
-     }:
-     mkDerivation {
-       pname = "cryptonite";
        version = "0.5";
        sha256 = "17b2axxb9i9cmwjhji1lm5nwhqm2wikxzy1cwmk2v8h64dy0rjc5";
        buildDepends = [
@@ -37268,8 +37294,8 @@ self: {
     ({ mkDerivation, base, csound-expression, transformers }:
      mkDerivation {
        pname = "csound-catalog";
-       version = "0.2.1";
-       sha256 = "0shbiykfxmh627bq9xf3zhs0x5g4q2d60vkw1gjqa8cgvl67v94n";
+       version = "0.2.2";
+       sha256 = "0rrd0gk6z16ydpn90i4siy3p7d1qxb14q022r3mqmj792c1v6z5p";
        buildDepends = [ base csound-expression transformers ];
        homepage = "https://github.com/anton-k/csound-catalog";
        description = "a gallery of Csound instruments";
@@ -37284,8 +37310,8 @@ self: {
      }:
      mkDerivation {
        pname = "csound-expression";
-       version = "4.7.1";
-       sha256 = "1zrllrj4jd26w7z080js2l9j939sbbcbp4zjdl37c68wsvc59qr9";
+       version = "4.8.1";
+       sha256 = "0mag076inyg9hs37anq7g7545wfjaphk831h8jj1fykp8iag95l4";
        buildDepends = [
          base Boolean colour csound-expression-dynamic
          csound-expression-opcodes csound-expression-typed data-default
@@ -37337,8 +37363,8 @@ self: {
      }:
      mkDerivation {
        pname = "csound-expression-typed";
-       version = "0.0.7.5";
-       sha256 = "1cazjx5xa81zxjds8xg4xdqp42y0izs0gx07684bshcvsz2hp91s";
+       version = "0.0.7.6";
+       sha256 = "01zi1hychx6vinxpqh7zdcj6jrlcpp86v7cmdzzq42z44apg8d3y";
        buildDepends = [
          base Boolean colour containers csound-expression-dynamic
          data-default deepseq ghc-prim stable-maps temporal-media
@@ -37354,8 +37380,8 @@ self: {
     ({ mkDerivation, base, csound-expression, transformers }:
      mkDerivation {
        pname = "csound-sampler";
-       version = "0.0.6.1";
-       sha256 = "0gxgzhn8qrr59asrcclfwsnlmd2g3qy8pk1ah8ivn42g97c3r0mf";
+       version = "0.0.6.2";
+       sha256 = "0qgz3k6cw5hzp5la051xnmg3697p7yfdamn8r6mp7ca4fai311h0";
        buildDepends = [ base csound-expression transformers ];
        homepage = "https://github.com/anton-k/csound-sampler";
        description = "A musical sampler based on Csound";
@@ -38623,8 +38649,8 @@ self: {
     ({ mkDerivation, base }:
      mkDerivation {
        pname = "data-cell";
-       version = "1.0.0.1";
-       sha256 = "0x8laijzcglgg5rxk4516f8qiy6825djkxjwyyk35w44ikwv1gxj";
+       version = "1.0.0.2";
+       sha256 = "03liak61gr90i48rd4dlm5lhr8z9v02nn6kdy33sinbpm6313agr";
        buildDepends = [ base ];
        homepage = "https://github.com/zadarnowski/data-cell";
        description = "Generic cellular data representation library";
@@ -41138,12 +41164,12 @@ self: {
      }) {};
 
   "deterministic-game-engine" = callPackage
-    ({ mkDerivation, base, hspec }:
+    ({ mkDerivation, base, hspec, mtl }:
      mkDerivation {
        pname = "deterministic-game-engine";
-       version = "0.1.0.0";
-       sha256 = "0kapl7s59ma8dmip3rd9cvcd4d8gvq0b7r9sflqs8nchs09njhr2";
-       buildDepends = [ base ];
+       version = "0.2.1";
+       sha256 = "0igs10h0mj8xxw9z57icx4y7mb7ag6m4cg7qiqk3b41xipxqn1ig";
+       buildDepends = [ base mtl ];
        testDepends = [ base hspec ];
        homepage = "https://github.com/TGOlson/deterministic-game-engine";
        description = "Simple deterministic game engine";
@@ -41405,6 +41431,7 @@ self: {
          base containers diagrams-lib HUnit QuickCheck test-framework
          test-framework-hunit test-framework-quickcheck2
        ];
+       jailbreak = true;
        homepage = "http://projects.haskell.org/diagrams/";
        description = "Collection of user contributions to diagrams EDSL";
        license = stdenv.lib.licenses.bsd3;
@@ -41423,6 +41450,7 @@ self: {
          adjunctions base containers distributive dual-tree lens linear
          monoid-extras mtl semigroups unordered-containers
        ];
+       jailbreak = true;
        homepage = "http://projects.haskell.org/diagrams";
        description = "Core libraries for diagrams EDSL";
        license = stdenv.lib.licenses.bsd3;
@@ -41464,6 +41492,7 @@ self: {
          base containers haskell-src-exts lens parsec QuickCheck tasty
          tasty-quickcheck
        ];
+       jailbreak = true;
        homepage = "http://projects.haskell.org/diagrams/";
        description = "Preprocessor for embedding diagrams in Haddock documentation";
        license = stdenv.lib.licenses.bsd3;
@@ -41531,6 +41560,7 @@ self: {
          process semigroups system-filepath tagged text transformers
          unordered-containers
        ];
+       jailbreak = true;
        homepage = "http://projects.haskell.org/diagrams";
        description = "Embedded domain-specific language for declarative graphics";
        license = stdenv.lib.licenses.bsd3;
@@ -43059,8 +43089,8 @@ self: {
      }:
      mkDerivation {
        pname = "diversity";
-       version = "0.6.3.0";
-       sha256 = "176ichmxfkgjqrlpanpdbni54bzd6zp8hrqbknvg8cfa7faly2lx";
+       version = "0.7.0.0";
+       sha256 = "04zmqsdpplps0xnhndpvfhxq2mfhnxbj1nzspw28ky7pcps1w621";
        isLibrary = true;
        isExecutable = true;
        buildDepends = [
@@ -45354,13 +45384,12 @@ self: {
      }:
      mkDerivation {
        pname = "ekg";
-       version = "0.4.0.6";
-       sha256 = "0s3snpak9kighii4gsq9svc92qiqcr46jw0v02f98jgfqbi9wanc";
+       version = "0.4.0.7";
+       sha256 = "0isq39a1c8laiigxi5yqv7d6798xc828xh4p0zan0a6m6glrmygr";
        buildDepends = [
          aeson base bytestring ekg-core filepath network snap-core
          snap-server text time transformers unordered-containers
        ];
-       jailbreak = true;
        homepage = "https://github.com/tibbe/ekg";
        description = "Remote monitoring of processes";
        license = stdenv.lib.licenses.bsd3;
@@ -45391,8 +45420,8 @@ self: {
      }:
      mkDerivation {
        pname = "ekg-carbon";
-       version = "1.0.3";
-       sha256 = "0138r186w56qxkrm0akzx60j25gkhg0a9nbhhhjj3f3igaxjm6br";
+       version = "1.0.4";
+       sha256 = "0l1gg13wxyivcxcsmzq6wv7ma4vk6afxjmw7f9n9dc3zdga0v772";
        buildDepends = [
          base ekg-core network network-carbon text time unordered-containers
          vector
@@ -45843,6 +45872,23 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "emacs-keys" = callPackage
+    ({ mkDerivation, base, doctest, split, tasty, tasty-hspec
+     , tasty-quickcheck, template-haskell, th-lift, xkbcommon
+     }:
+     mkDerivation {
+       pname = "emacs-keys";
+       version = "0.0.2.0";
+       sha256 = "12zxvjmlp06rjlhb7iaz7qrzb7cr1rgqg5ql5vv3lkz7z84h82ph";
+       buildDepends = [ base split template-haskell th-lift xkbcommon ];
+       testDepends = [
+         base doctest tasty tasty-hspec tasty-quickcheck xkbcommon
+       ];
+       homepage = "https://github.com/cocreature/emacs-keys";
+       description = "library to parse emacs style keybinding into the modifiers and the chars";
+       license = stdenv.lib.licenses.isc;
+     }) {};
+
   "email" = callPackage
     ({ mkDerivation, array, base, bytestring, encoding, HaskellNet
      , hsemail, old-locale, old-time, parsec, process, time
@@ -46914,6 +46960,7 @@ self: {
        version = "1.1.0.1";
        sha256 = "1sf378qhmsxxazkk7nn1d7nvrq1ladsfvkzshqjwsnyl5pgj7sgq";
        buildDepends = [ ad base distributive lens linear reflection ];
+       jailbreak = true;
        homepage = "https://github.com/GaloisInc/estimator";
        description = "State-space estimation algorithms such as Kalman Filters";
        license = stdenv.lib.licenses.bsd3;
@@ -48118,10 +48165,8 @@ self: {
      }:
      mkDerivation {
        pname = "fast-logger";
-       version = "2.3.1";
-       revision = "1";
-       sha256 = "02smmj62jir0c4ix929xy7zsd03djp53hxps0wgqga1f123gksri";
-       editedCabalFile = "9823350b03eb3ff26c7088f9ea871ff54996b4545f534c268d988f72a126ccea";
+       version = "2.4.0";
+       sha256 = "1hh5rll2q4dpshplyk0hciknvypx3v2hd102hf0f2z5h70d4xzsc";
        buildDepends = [
          array auto-update base bytestring bytestring-builder directory
          filepath text
@@ -50570,6 +50615,7 @@ self: {
        version = "0.4.0.1";
        sha256 = "1qchmhn6hp91gzds6yqjn4kssp7n3g7vqhl919wf8d3nn4ykz3av";
        buildDepends = [ base containers data-default-class lens linear ];
+       jailbreak = true;
        description = "Simple force-directed layout";
        license = stdenv.lib.licenses.bsd3;
      }) {};
@@ -55348,8 +55394,8 @@ self: {
      }:
      mkDerivation {
        pname = "google-oauth2";
-       version = "0.1.0";
-       sha256 = "0sn86raxvgzp4hjmg5b0gm5ibhiys5jimvxgds13qxbgrgcvvwh6";
+       version = "0.2.0";
+       sha256 = "15aqwbr8wb1ghzy0r0k3fvfr187d9s3zz21lp07ci9pyz8ln8z08";
        buildDepends = [ aeson base bytestring HTTP http-conduit ];
        testDepends = [
          base bytestring hspec http-conduit http-types load-env
@@ -60687,22 +60733,19 @@ self: {
   "haskell-awk" = callPackage
     ({ mkDerivation, base, bytestring, containers, directory, doctest
      , easy-file, exceptions, filepath, haskell-src-exts, hint, hspec
-     , HUnit, MonadCatchIO-mtl, mtl, network, process, stringsearch
-     , temporary, test-framework, test-framework-hunit, time
-     , transformers
+     , HUnit, mtl, network, process, stringsearch, temporary
+     , test-framework, test-framework-hunit, time, transformers
      }:
      mkDerivation {
        pname = "haskell-awk";
-       version = "1.1";
-       revision = "3";
-       sha256 = "0ic21rfm35jp7476pm6ggkp4faqsn9rhvzb58b497ilgj9wzv1dp";
-       editedCabalFile = "dda4e94c57a8fce2f7d269dc09363ee84b71b33863bf1601347fa5a4b1a55698";
+       version = "1.1.1";
+       sha256 = "0s6vzfsqh2wwsp98l8zpg6cvh7jwz5wha44idz3yavhmy6z08zgd";
        isLibrary = true;
        isExecutable = true;
        buildDepends = [
          base bytestring containers directory easy-file exceptions filepath
-         haskell-src-exts hint MonadCatchIO-mtl mtl network process
-         stringsearch time transformers
+         haskell-src-exts hint mtl network process stringsearch time
+         transformers
        ];
        testDepends = [
          base bytestring containers directory doctest easy-file exceptions
@@ -60710,7 +60753,6 @@ self: {
          stringsearch temporary test-framework test-framework-hunit time
          transformers
        ];
-       jailbreak = true;
        description = "Transform text from the command-line using Haskell expressions";
        license = stdenv.lib.licenses.asl20;
        hydraPlatforms = stdenv.lib.platforms.none;
@@ -63412,17 +63454,17 @@ self: {
 
   "hdevtools" = callPackage
     ({ mkDerivation, base, Cabal, cmdargs, directory, filepath, ghc
-     , ghc-paths, network, syb, time, unix
+     , ghc-paths, network, process, syb, time, unix
      }:
      mkDerivation {
        pname = "hdevtools";
-       version = "0.1.0.9";
-       sha256 = "0wwwsh0fi16j5ybsqplwzr0srijjlqs8ywjakqnh25xsvjzmlh66";
+       version = "0.1.1.9";
+       sha256 = "0cwgm4yws4irrrpk2jvgvgr74w7gn9ilcidb9flkxfh7kqwsjxac";
        isLibrary = false;
        isExecutable = true;
        buildDepends = [
-         base Cabal cmdargs directory filepath ghc ghc-paths network syb
-         time unix
+         base Cabal cmdargs directory filepath ghc ghc-paths network process
+         syb time unix
        ];
        homepage = "https://github.com/schell/hdevtools/";
        description = "Persistent GHC powered background server for FAST haskell development tools";
@@ -68175,22 +68217,22 @@ self: {
 
   "hpack" = callPackage
     ({ mkDerivation, aeson, aeson-qq, base, base-compat, deepseq
-     , directory, filepath, hspec, interpolate, mockery, text
+     , directory, filepath, Glob, hspec, interpolate, mockery, text
      , unordered-containers, yaml
      }:
      mkDerivation {
        pname = "hpack";
-       version = "0.4.0";
-       sha256 = "01wqf30zdcgra5vj7d3378lmjh26z1g3z9qp746ly45yz0rpryz2";
+       version = "0.5.1";
+       sha256 = "1bbmwan9la5agys1jw95z1immy36pgk93n5x90vsm674dwcj5hrk";
        isLibrary = true;
        isExecutable = true;
        buildDepends = [
-         aeson base base-compat deepseq directory filepath text
+         aeson base base-compat deepseq directory filepath Glob text
          unordered-containers yaml
        ];
        testDepends = [
-         aeson aeson-qq base base-compat deepseq directory filepath hspec
-         interpolate mockery text unordered-containers yaml
+         aeson aeson-qq base base-compat deepseq directory filepath Glob
+         hspec interpolate mockery text unordered-containers yaml
        ];
        homepage = "https://github.com/sol/hpack#readme";
        description = "An alternative format for Haskell packages";
@@ -68472,8 +68514,8 @@ self: {
      }:
      mkDerivation {
        pname = "hprotoc";
-       version = "2.1.0";
-       sha256 = "18a4wc22yqbqx2n62935q3i9y4kkcxk8r5kcphhbqmzcxf20x7gr";
+       version = "2.1.3";
+       sha256 = "1fy2bnk8jlakfgvap9ma5qxyvqgl25dbqk7a7n9m4q0z8ba0s1di";
        isLibrary = true;
        isExecutable = true;
        buildDepends = [
@@ -69329,8 +69371,8 @@ self: {
      }:
      mkDerivation {
        pname = "hsb2hs";
-       version = "0.3";
-       sha256 = "16awid7ybqbnja77swphq3csg476pk8l6ygjl5r5ndprahzkdrh5";
+       version = "0.3.1";
+       sha256 = "1n7rj2q87j544d82alxhrsqhz4ix8qpwxpw3l2np7wjl0n101n4a";
        isLibrary = false;
        isExecutable = true;
        buildDepends = [
@@ -70111,8 +70153,8 @@ self: {
     ({ mkDerivation, base, HUnit, mtl }:
      mkDerivation {
        pname = "hset";
-       version = "1.0.0";
-       sha256 = "16180gzms34fh5s2byp5disazi2bww022dln4q7lv523css3mrcf";
+       version = "1.0.1";
+       sha256 = "1iix3syq0cvpiwf6qr6hvcxii6qlzwqcnm416pvndcm7ymkhw04v";
        buildDepends = [ base mtl ];
        testDepends = [ base HUnit mtl ];
        homepage = "https://bitbucket.org/s9gf4ult/hset";
@@ -70126,8 +70168,8 @@ self: {
      }:
      mkDerivation {
        pname = "hsexif";
-       version = "0.6.0.2";
-       sha256 = "1a67cyzfiriyhyacihs47d0427yll91fmbs56fhk82k3mdi74a60";
+       version = "0.6.0.3";
+       sha256 = "02jpp2p8xmhmx6srpcm330k73x306h34ik2rdavfwpgw5mjk88hl";
        buildDepends = [
          base binary bytestring containers iconv text time
        ];
@@ -70709,20 +70751,22 @@ self: {
 
   "hsparql" = callPackage
     ({ mkDerivation, base, bytestring, containers, HTTP, http-types
-     , HUnit, MissingH, mtl, network, rdf4h, test-framework
+     , HUnit, MissingH, mtl, network, network-uri, rdf4h, test-framework
      , test-framework-hunit, text, wai, warp, xml
      }:
      mkDerivation {
        pname = "hsparql";
-       version = "0.2.5";
-       sha256 = "1rhkl5l414w6pp3q3x0pkahghyagq3fwlny61vn0rpxlyihcin42";
+       version = "0.2.6";
+       sha256 = "1vgdp4gz7zwh1n3iilg6kwdasfy4w48pjjgj6swr17k37irwzal4";
        buildDepends = [
-         base bytestring HTTP MissingH mtl network rdf4h text xml
+         base bytestring HTTP MissingH mtl network network-uri rdf4h text
+         xml
        ];
        testDepends = [
-         base containers http-types HUnit rdf4h test-framework
+         base containers http-types HUnit network-uri rdf4h test-framework
          test-framework-hunit text wai warp
        ];
+       jailbreak = true;
        homepage = "https://github.com/robstewart57/hsparql";
        description = "A SPARQL query generator and DSL, and a client to query a SPARQL server";
        license = stdenv.lib.licenses.bsd3;
@@ -70762,7 +70806,6 @@ self: {
        testDepends = [
          base directory hspec-core hspec-meta stringbuilder
        ];
-       doCheck = false;
        homepage = "http://hspec.github.io/";
        description = "A Testing Framework for Haskell";
        license = stdenv.lib.licenses.mit;
@@ -71806,18 +71849,19 @@ self: {
      }) {};
 
   "htar" = callPackage
-    ({ mkDerivation, base, bytestring, bzlib, directory, filepath, tar
-     , time, zlib
+    ({ mkDerivation, base, bytestring, bzlib, directory, filepath
+     , old-locale, tar, time, zlib
      }:
      mkDerivation {
        pname = "htar";
-       version = "0.4.0.1";
-       sha256 = "17zxk0fig5sh967zz33k8as132i2ghazpj5w93vl6hw8d1hrj2n6";
+       version = "0.4.0.2";
+       sha256 = "15m57vq0hcfk2dqamh2c624icv3smcqjgswy58glcclxz7f8ly3z";
        isLibrary = false;
        isExecutable = true;
        buildDepends = [
-         base bytestring bzlib directory filepath tar time zlib
+         base bytestring bzlib directory filepath old-locale tar time zlib
        ];
+       jailbreak = true;
        description = "Command-line tar archive utility";
        license = stdenv.lib.licenses.bsd3;
      }) {};
@@ -72743,25 +72787,26 @@ self: {
      }) {};
 
   "http2" = callPackage
-    ({ mkDerivation, aeson, aeson-pretty, array, base, blaze-builder
-     , bytestring, containers, directory, doctest, filepath, Glob, hex
-     , hspec, PSQueue, text, unordered-containers, vector, word8
+    ({ mkDerivation, aeson, aeson-pretty, array, base, bytestring
+     , bytestring-builder, containers, directory, doctest, filepath
+     , Glob, hex, hspec, mwc-random, stm, text, unordered-containers
+     , vector, word8
      }:
      mkDerivation {
        pname = "http2";
-       version = "0.9.1";
-       sha256 = "1aqc8rhnh1l3f3fq6n9vjgamxjxjip52f9j01caaccrylahy57mm";
+       version = "1.0.1";
+       sha256 = "1iw1k3xs79xfzwgykpbyvfsdns4ljfmvf1v98jjklimrzsmlsgz3";
        isLibrary = true;
        isExecutable = true;
        buildDepends = [
-         aeson aeson-pretty array base blaze-builder bytestring containers
-         directory filepath hex PSQueue text unordered-containers vector
-         word8
+         aeson aeson-pretty array base bytestring bytestring-builder
+         containers directory filepath hex mwc-random stm text
+         unordered-containers vector word8
        ];
        testDepends = [
-         aeson aeson-pretty array base blaze-builder bytestring containers
-         directory doctest filepath Glob hex hspec PSQueue text
-         unordered-containers vector word8
+         aeson aeson-pretty array base bytestring bytestring-builder
+         containers directory doctest filepath Glob hex hspec mwc-random stm
+         text unordered-containers vector word8
        ];
        description = "HTTP/2.0 library including frames and HPACK";
        license = stdenv.lib.licenses.bsd3;
@@ -74098,10 +74143,8 @@ self: {
      }:
      mkDerivation {
        pname = "hyperloglog";
-       version = "0.3.1";
-       revision = "1";
-       sha256 = "13pmqkqldy5n274rld9acdypp39f51qmc9v14kwpw95lkpd9bxnl";
-       editedCabalFile = "9656873f269cef1f68eaa95e106bb49f6f5f5538bef06d82244d566e344c3ef6";
+       version = "0.3.3";
+       sha256 = "033841498nnlczypd87xjwlxcka9w5cj7881qpb94xd0dwllagnc";
        buildDepends = [
          approximate base binary bits bytes cereal cereal-vector comonad
          deepseq distributive generic-deriving hashable hashable-extras lens
@@ -75456,8 +75499,11 @@ self: {
      mkDerivation {
        pname = "index-core";
        version = "1.0.2";
+       revision = "1";
        sha256 = "0sj69r9mavw1s17lhh7af9n5vrb60gk5lm6v593sp0rs77canldw";
+       editedCabalFile = "97808339bd2ac8a5c79ed99e716e2e8e941234421fde3930b370e0bbc734b063";
        buildDepends = [ base ];
+       jailbreak = true;
        description = "Indexed Types";
        license = stdenv.lib.licenses.bsd3;
        hydraPlatforms = stdenv.lib.platforms.none;
@@ -76544,10 +76590,8 @@ self: {
      }:
      mkDerivation {
        pname = "iproute";
-       version = "1.4.0";
-       revision = "1";
-       sha256 = "00f4xddz9js73bsy15zsznmnad2psq7wg1ha7pmhdmdw5zlmqvad";
-       editedCabalFile = "c3781d19d6853f9d7c8308f716521cfe3e4d2c2851d91025e1d75003ca5cd35b";
+       version = "1.5.0";
+       sha256 = "0mr5dwzvsik5v59fy5lpnj6qabgc8cwbybil5hb6gqqvd0y26fz3";
        buildDepends = [ appar base byteorder containers network ];
        testDepends = [
          appar base byteorder containers doctest hspec network QuickCheck
@@ -77588,18 +77632,18 @@ self: {
   "jammittools" = callPackage
     ({ mkDerivation, base, boxes, bytestring, conduit, conduit-audio
      , containers, directory, filepath, HPDF, JuicyPixels, process
-     , property-list, resourcet, temporary, transformers, vector
+     , resourcet, temporary, text, transformers, vector, xml
      }:
      mkDerivation {
        pname = "jammittools";
-       version = "0.4.1.1";
-       sha256 = "0caqvq7pl0jbka915xqy3sljjmwc2adk1hkm2775vnsvswh9nysg";
+       version = "0.5";
+       sha256 = "1rjmwxp078mq47b879ylfz4g2p9irgh4jrrg1vknwham46nj8hzn";
        isLibrary = true;
        isExecutable = true;
        buildDepends = [
          base boxes bytestring conduit conduit-audio containers directory
-         filepath HPDF JuicyPixels process property-list resourcet temporary
-         transformers vector
+         filepath HPDF JuicyPixels process resourcet temporary text
+         transformers vector xml
        ];
        homepage = "https://github.com/mtolly/jammittools";
        description = "Export sheet music and audio from Windows/Mac app Jammit";
@@ -78352,8 +78396,8 @@ self: {
      }:
      mkDerivation {
        pname = "json-rpc-client";
-       version = "0.1.4.0";
-       sha256 = "1lcjwf6j6j3azrrmbdhffm8a27d6gn48zrgp3w89x9ckgflyby22";
+       version = "0.2.0.0";
+       sha256 = "13mc23dpyn9zsv1gfb913g8w8csjgnk5xrbbyhxgmam9kslpbxjj";
        isLibrary = true;
        isExecutable = true;
        buildDepends = [
@@ -78365,6 +78409,7 @@ self: {
          scientific test-framework test-framework-hunit
          test-framework-quickcheck2 text unordered-containers vector
        ];
+       homepage = "https://github.com/grayjay/json-rpc-client";
        description = "JSON-RPC 2.0 on the client side.";
        license = stdenv.lib.licenses.mit;
      }) {};
@@ -78376,8 +78421,8 @@ self: {
      }:
      mkDerivation {
        pname = "json-rpc-server";
-       version = "0.1.6.0";
-       sha256 = "0qlmv4l0p70rij18m380myw2p1mhdq432kc0yky3n8rx8n29dlfq";
+       version = "0.2.0.0";
+       sha256 = "08v2bvswn0a0jhd0gd83f2lxr0n0nirl9xav7zj3y3bjdkxwlkys";
        isLibrary = true;
        isExecutable = true;
        buildDepends = [
@@ -78387,6 +78432,7 @@ self: {
          aeson base bytestring HUnit mtl test-framework test-framework-hunit
          text unordered-containers vector
        ];
+       homepage = "https://github.com/grayjay/json-rpc-server";
        description = "JSON-RPC 2.0 on the server side.";
        license = stdenv.lib.licenses.mit;
      }) {};
@@ -81828,7 +81874,7 @@ self: {
 
   "leksah" = callPackage
     ({ mkDerivation, array, base, binary, binary-shared, blaze-html
-     , bytestring, Cabal, conduit, containers, deepseq, directory
+     , bytestring, Cabal, conduit, containers, cpphs, deepseq, directory
      , executable-path, filepath, ghc, ghcjs-codemirror, ghcjs-dom, gio
      , glib, gtk3, gtksourceview3, hamlet, haskell-src-exts, hlint
      , hslogger, jsaddle, leksah-server, lens, ltk, monad-loops, mtl
@@ -81839,13 +81885,13 @@ self: {
      }:
      mkDerivation {
        pname = "leksah";
-       version = "0.15.0.5";
-       sha256 = "0k2mbhzjjs8a6bg83iwsjw454pm42179wr2l4vh35cvc5bxii33w";
+       version = "0.15.0.6";
+       sha256 = "0hr0d4cl0gh58svpk9dji00rsypkplndd5q5av4bx2v34bx0v0rh";
        isLibrary = true;
        isExecutable = true;
        buildDepends = [
          array base binary binary-shared blaze-html bytestring Cabal conduit
-         containers deepseq directory executable-path filepath ghc
+         containers cpphs deepseq directory executable-path filepath ghc
          ghcjs-codemirror ghcjs-dom gio glib gtk3 gtksourceview3 hamlet
          haskell-src-exts hlint hslogger jsaddle leksah-server lens ltk mtl
          network network-uri old-time parsec pretty pretty-show QuickCheck
@@ -81874,8 +81920,8 @@ self: {
      }:
      mkDerivation {
        pname = "leksah-server";
-       version = "0.15.0.3";
-       sha256 = "1lh4jwm6x5axhhv5micd03wgv063p71z6vdmszsjpkhfsi9pmgh3";
+       version = "0.15.0.4";
+       sha256 = "0zjdzsv9vwhsabkkyf47gfsca4b1yqjgd2vlvb0qm7ca9gymd0ic";
        isLibrary = true;
        isExecutable = true;
        buildDepends = [
@@ -81913,25 +81959,25 @@ self: {
      }) {};
 
   "lens" = callPackage
-    ({ mkDerivation, array, base, bifunctors, bytestring, comonad
-     , containers, contravariant, deepseq, directory, distributive
-     , doctest, exceptions, filepath, free, generic-deriving, ghc-prim
-     , hashable, hlint, HUnit, kan-extensions, mtl, nats, parallel
-     , profunctors, QuickCheck, reflection, semigroupoids, semigroups
-     , simple-reflect, tagged, template-haskell, test-framework
-     , test-framework-hunit, test-framework-quickcheck2
-     , test-framework-th, text, transformers, transformers-compat
-     , unordered-containers, vector, void
+    ({ mkDerivation, array, base, base-orphans, bifunctors, bytestring
+     , comonad, containers, contravariant, deepseq, directory
+     , distributive, doctest, exceptions, filepath, free
+     , generic-deriving, ghc-prim, hashable, hlint, HUnit
+     , kan-extensions, mtl, nats, parallel, profunctors, QuickCheck
+     , reflection, semigroupoids, semigroups, simple-reflect, tagged
+     , template-haskell, test-framework, test-framework-hunit
+     , test-framework-quickcheck2, test-framework-th, text, transformers
+     , transformers-compat, unordered-containers, vector, void
      }:
      mkDerivation {
        pname = "lens";
-       version = "4.11";
-       sha256 = "1699jbsdgffnhzpy6c2k6ld13crqibm7vc3x2gx95gwzx5hlccxm";
+       version = "4.11.1";
+       sha256 = "1f3xyz9y6510nbskc15brjdg226qpwgjnzddc29kg0g79x5wwcpi";
        buildDepends = [
-         array base bifunctors bytestring comonad containers contravariant
-         distributive exceptions filepath free ghc-prim hashable
-         kan-extensions mtl parallel profunctors reflection semigroupoids
-         semigroups tagged template-haskell text transformers
+         array base base-orphans bifunctors bytestring comonad containers
+         contravariant distributive exceptions filepath free ghc-prim
+         hashable kan-extensions mtl parallel profunctors reflection
+         semigroupoids semigroups tagged template-haskell text transformers
          transformers-compat unordered-containers vector void
        ];
        testDepends = [
@@ -82077,8 +82123,8 @@ self: {
      }:
      mkDerivation {
        pname = "lens-simple";
-       version = "0.1.0.6";
-       sha256 = "097zxi3g9ziadiwg4sk96gfjv0jrv4sd3kkpv1hdwjqw1x1dknd3";
+       version = "0.1.0.7";
+       sha256 = "08ynx0zhll603srdmgqf9pgdbzn4i9ry99hs7m35kwaj21whrq5q";
        buildDepends = [
          base lens-family lens-family-core lens-family-th mtl transformers
        ];
@@ -83274,10 +83320,8 @@ self: {
      }:
      mkDerivation {
        pname = "linear";
-       version = "1.18.1.1";
-       revision = "2";
-       sha256 = "1qgpv6c3q4ljqc3223iyj49piqs9xx58zmnpvg76wkaygsnnzq9p";
-       editedCabalFile = "8c57bd840e0c9ab84b032d65a2a48ed6d20da4fb780f0d89d8c53adccc632ba4";
+       version = "1.19";
+       sha256 = "1i5wbp6dbmdmys6scqyn0iiz4qhsj6m4v2ipicqx7nrl490vbivf";
        buildDepends = [
          adjunctions base binary bytes cereal containers deepseq
          distributive ghc-prim hashable lens reflection semigroupoids
@@ -84540,14 +84584,14 @@ self: {
        homepage = "http://github.com/dmbarbour/haskell-lmdb";
        description = "Lightning MDB bindings";
        license = stdenv.lib.licenses.bsd2;
-     }) { lmdb = null;};
+     }) { inherit (pkgs) lmdb;};
 
   "load-env" = callPackage
     ({ mkDerivation, base, directory, hspec, HUnit, parsec }:
      mkDerivation {
        pname = "load-env";
-       version = "0.1.0";
-       sha256 = "1yvnb42i1pzmvs2mjfjl8crxyr6ghw00dhrv548pmks1q5md8z75";
+       version = "0.1.1";
+       sha256 = "05pxxplp96pcnzk61xcckxnxljl3hjl13ckn4xrr93zmlw49rqwg";
        buildDepends = [ base directory parsec ];
        testDepends = [ base directory hspec HUnit parsec ];
        description = "Load environment variables from a file";
@@ -84709,8 +84753,8 @@ self: {
      }:
      mkDerivation {
        pname = "log-domain";
-       version = "0.10.1";
-       sha256 = "0gbs902l5fh5pqhcj31g0a5d2irjx11sw3jhk69c9hcfssclnd8h";
+       version = "0.10.1.1";
+       sha256 = "084mzaha7g00yxxy4hgl2dia73hzch91961gjvrb20wv6zxf8f7g";
        buildDepends = [
          base binary bytes cereal comonad deepseq distributive
          generic-deriving hashable hashable-extras safecopy semigroupoids
@@ -87873,8 +87917,8 @@ self: {
      }:
      mkDerivation {
        pname = "metrics";
-       version = "0.3.0.1";
-       sha256 = "1mj4x5pq9mch71vk5cqi2wjaqjhgsllvjbsz7yyv6sg4cps63d8l";
+       version = "0.3.0.2";
+       sha256 = "00iwairgi9lvb4f8iz4d834v8vq1f4awr34nl72fbkqgccdq1whd";
        buildDepends = [
          ansi-terminal base bytestring containers lens mtl mwc-random
          primitive text time unix unordered-containers vector
@@ -88208,8 +88252,8 @@ self: {
      }:
      mkDerivation {
        pname = "mighttpd2";
-       version = "3.2.8";
-       sha256 = "07fjmflyblyhrkj0477d83dqfkvcq4g2sh7g40x5yr3iawi1kdsp";
+       version = "3.2.9";
+       sha256 = "0gxdf9xkw1w4cdb8cdq1slj5x1ch39kxrqhnaxdkb8w4jdxqbj5p";
        isLibrary = true;
        isExecutable = true;
        buildDepends = [
@@ -89294,8 +89338,8 @@ self: {
      }:
      mkDerivation {
        pname = "monad-logger";
-       version = "0.3.13.1";
-       sha256 = "0mwdihxly22axrjs9g741zab2yyrm6zy73di99m7lvg8jdj4m2r6";
+       version = "0.3.13.2";
+       sha256 = "1cp2npa5mzn3yss1di151ikw7hx4slc99cvx8gipdwp1696kqf61";
        buildDepends = [
          base blaze-builder bytestring conduit conduit-extra exceptions
          fast-logger lifted-base monad-control monad-loops mtl resourcet stm
@@ -93116,8 +93160,8 @@ self: {
      }:
      mkDerivation {
        pname = "network";
-       version = "2.6.2.0";
-       sha256 = "0szkzllpc6vs72fz7nykf5y7vc8mvqfv6h4sshfwmdazl2zv03n5";
+       version = "2.6.2.1";
+       sha256 = "1yhvpd4wigz165jvyvw9zslx7lgqdj63jh3zv5s74b5ykdfa3zd3";
        buildDepends = [ base bytestring unix ];
        testDepends = [
          base bytestring HUnit test-framework test-framework-hunit
@@ -95380,8 +95424,8 @@ self: {
     ({ mkDerivation, base }:
      mkDerivation {
        pname = "old-version";
-       version = "1.3.1";
-       sha256 = "19rra617l1rfixpc7s29q1frjk6zlbmp06gzcv03g3hv3f7c4hcf";
+       version = "1.3.2";
+       sha256 = "0mh8xkcwx7p0vrg8gqza019k4faw7zw703mrin8ii85igq9sg70i";
        buildDepends = [ base ];
        jailbreak = true;
        description = "Basic versioning library";
@@ -97058,7 +97102,7 @@ self: {
          process QuickCheck syb test-framework test-framework-hunit
          test-framework-quickcheck2 text zip-archive
        ];
-       configureFlags = [ "-fhttps" "-fmake-pandoc-man-pages" ];
+       configureFlags = [ "-fhttps" ];
        homepage = "http://pandoc.org";
        description = "Conversion between markup formats";
        license = "GPL";
@@ -97384,12 +97428,11 @@ self: {
      }:
      mkDerivation {
        pname = "parcom-lib";
-       version = "0.8.0.2";
-       sha256 = "14afqaq4r556rf1wmjd14682dph8ji2b9r4dx1mjlxyr096l84h6";
+       version = "0.8.0.3";
+       sha256 = "0xkxkqswpkqr9xcpg52v845kkxg8z20r26yih8l2vwkym5cj49ab";
        buildDepends = [
          base bytestring containers mtl text transformers utf8-string word8
        ];
-       jailbreak = true;
        homepage = "https://bitbucket.org/tdammers/parcom-lib";
        description = "A simple parser-combinator library, a bit like Parsec but without the frills";
        license = stdenv.lib.licenses.bsd3;
@@ -99720,8 +99763,8 @@ self: {
     ({ mkDerivation, base, enumerator, pipes, transformers }:
      mkDerivation {
        pname = "pipe-enumerator";
-       version = "0.3.0.1";
-       sha256 = "1nma4pjc472nc9g8b626k7f01rl8z9hsd7j8wsa1ir3r7jb5jpwp";
+       version = "0.3.0.2";
+       sha256 = "0h6k00k85pn0jajk3rvvfnrfwlkllprhv00x0qd9zg9gg7lf7zkc";
        buildDepends = [ base enumerator pipes transformers ];
        homepage = "https://github.com/zadarnowski/pipe-enumerator";
        description = "A bidirectional bridge between pipes and iteratees";
@@ -99869,6 +99912,31 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "pipes-cellular" = callPackage
+    ({ mkDerivation, base, bytestring, data-cell, pipes }:
+     mkDerivation {
+       pname = "pipes-cellular";
+       version = "0.0.0.1";
+       sha256 = "0j0ayzvc9k3fmd9j37p41z50nqp4hwyywashcvng23qgp7m4ahdc";
+       buildDepends = [ base bytestring data-cell pipes ];
+       homepage = "https://github.com/zadarnowski/pipes-cellular";
+       description = "Pipes-based combinators for cellular data processing";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
+  "pipes-cellular-csv" = callPackage
+    ({ mkDerivation, base, bytestring, data-cell, pipes, pipes-cellular
+     }:
+     mkDerivation {
+       pname = "pipes-cellular-csv";
+       version = "1.0.0.0";
+       sha256 = "1lzism9rrs1569lhbjl6b49c461igmpgvxq6pnnpfvnqbps56vc9";
+       buildDepends = [ base bytestring data-cell pipes pipes-cellular ];
+       homepage = "https://github.com/zadarnowski/pipes-cellular-csv";
+       description = "Efficient pipes-based cellular CSV codec";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "pipes-cereal-plus" = callPackage
     ({ mkDerivation, base, bytestring, cereal-plus, errors, mtl, pipes
      , pipes-bytestring, text
@@ -100197,8 +100265,8 @@ self: {
     ({ mkDerivation, base, pipes, transformers }:
      mkDerivation {
        pname = "pipes-parse";
-       version = "3.0.2";
-       sha256 = "1d5lhh8knk0hmvd9wv2ihs5z9ybyvhd1n7qaazqkazqkyl14pd08";
+       version = "3.0.3";
+       sha256 = "00sslgh1h1n114adc0k2w23wk19pzmf2mh5zn37w40jdganrhlpm";
        buildDepends = [ base pipes transformers ];
        description = "Parsing infrastructure for the pipes ecosystem";
        license = stdenv.lib.licenses.bsd3;
@@ -101644,6 +101712,17 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "postgresql-cube" = callPackage
+    ({ mkDerivation, base, bytestring, postgresql-simple }:
+     mkDerivation {
+       pname = "postgresql-cube";
+       version = "0.1.0.0";
+       sha256 = "0jla8rxnrk995qxyp5dgwm2d6yrcafyz5mj7yqr6v5jyzh6b59c3";
+       buildDepends = [ base bytestring postgresql-simple ];
+       description = "Cube support for postgresql-simple";
+       license = stdenv.lib.licenses.mit;
+     }) {};
+
   "postgresql-libpq" = callPackage
     ({ mkDerivation, base, bytestring, postgresql }:
      mkDerivation {
@@ -101690,8 +101769,8 @@ self: {
      }:
      mkDerivation {
        pname = "postgresql-query";
-       version = "1.3.1";
-       sha256 = "19lzpxdfvidhrmmay2g3vxdbx9zcnp6r949lind04wbwwy3pbb0c";
+       version = "1.4.0";
+       sha256 = "0ba5sslcjmfvjm1s3sf1ym7lgzgxx0p5gzdgby1r2y20i5cswfsr";
        buildDepends = [
          aeson attoparsec base blaze-builder bytestring containers
          data-default either exceptions file-embed haskell-src-meta hreader
@@ -102895,8 +102974,8 @@ self: {
      }:
      mkDerivation {
        pname = "process-streaming";
-       version = "0.7.2.1";
-       sha256 = "118ig98xi2jdh966483d37wx5wa5mcm7qyfnrb1xszw2nqcivvvx";
+       version = "0.7.2.2";
+       sha256 = "0jmhl7jdrznbf9w9cpwh98apghhcnb9vadj94sjxfh288k21ckb3";
        buildDepends = [
          base bifunctors bytestring conceit containers contravariant foldl
          free pipes pipes-bytestring pipes-concurrency pipes-parse
@@ -102910,7 +102989,6 @@ self: {
          pipes-safe pipes-text process semigroups tasty tasty-hunit text
          transformers transformers-compat void
        ];
-       jailbreak = true;
        description = "Streaming interface to system processes";
        license = stdenv.lib.licenses.bsd3;
      }) {};
@@ -103329,10 +103407,8 @@ self: {
     ({ mkDerivation, base, mtl, transformers, transformers-compat }:
      mkDerivation {
        pname = "prompt";
-       version = "0.1.0.0";
-       revision = "3";
-       sha256 = "16gnd5spccfjl6q6ybxciy9am5bkrzssi13dxl73zyklj37nf9hq";
-       editedCabalFile = "dc64376a5e4f99f5ef13edbcac5d80610d73f78d4362b9acf75cf90af485f3f9";
+       version = "0.1.1.0";
+       sha256 = "13ayvs1irsa1hqy6y6ca99dr20vwvy9g10zjrqshvj48i5ra2j4g";
        buildDepends = [ base mtl transformers transformers-compat ];
        homepage = "https://github.com/mstksg/prompt";
        description = "Monad (and transformer) for deferred-effect pure prompt-response queries";
@@ -103521,8 +103597,8 @@ self: {
      }:
      mkDerivation {
        pname = "protocol-buffers";
-       version = "2.1.0";
-       sha256 = "11shs04gv2b9xx13izc6bkgqvvs7gv8k05vviyhscj5rpiihl9zi";
+       version = "2.1.3";
+       sha256 = "1ys0291js4mdfxqjk09lrmf33g7dh4rzq562f471ac98zwc5q588";
        buildDepends = [
          array base binary bytestring containers directory filepath mtl
          parsec syb utf8-string
@@ -103537,8 +103613,8 @@ self: {
     ({ mkDerivation, base, bytestring, containers, protocol-buffers }:
      mkDerivation {
        pname = "protocol-buffers-descriptor";
-       version = "2.1.0";
-       sha256 = "1id9pz8mxn7c6z433zib55fkx0s46316y6n2wpjk9zld21a2z5hy";
+       version = "2.1.3";
+       sha256 = "04iw8bfq9i89xvx2dn16cwv4w9zv3ljgngm6aac6imp7za4mvjzf";
        buildDepends = [ base bytestring containers protocol-buffers ];
        homepage = "https://github.com/k-bx/protocol-buffers";
        description = "Text.DescriptorProto.Options and code generated from the Google Protocol Buffer specification";
@@ -105000,6 +105076,42 @@ self: {
        license = stdenv.lib.licenses.gpl3;
      }) {};
 
+  "quiver" = callPackage
+    ({ mkDerivation, base }:
+     mkDerivation {
+       pname = "quiver";
+       version = "0.0.0.6";
+       sha256 = "0g9qfspzamxxn8zvl698g9f8y3alm4js7i7k9wa737pgv47lzqbz";
+       buildDepends = [ base ];
+       homepage = "https://github.com/zadarnowski/quiver";
+       description = "Quiver finite stream processing library";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
+  "quiver-bytestring" = callPackage
+    ({ mkDerivation, base, bytestring, quiver }:
+     mkDerivation {
+       pname = "quiver-bytestring";
+       version = "0.0.0.1";
+       sha256 = "03lw2yi4a3d5nd7xqlcs4pmf0rcbfw3n4s36wgaxy4wn3bhh3300";
+       buildDepends = [ base bytestring quiver ];
+       homepage = "https://github.com/zadarnowski/quiver-bytestring";
+       description = "Quiver combinators for bytestring streaming";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
+  "quiver-cell" = callPackage
+    ({ mkDerivation, base, data-cell, quiver }:
+     mkDerivation {
+       pname = "quiver-cell";
+       version = "0.0.0.1";
+       sha256 = "1bz74xigj99v9hh4i6m6z4h9f0l09rnbs108npnl953v0bqi44qi";
+       buildDepends = [ base data-cell quiver ];
+       homepage = "https://github.com/zadarnowski/quiver-cell";
+       description = "Quiver combinators for cellular data processing";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "quoridor-hs" = callPackage
     ({ mkDerivation, ansi-terminal, async, base, bytestring, containers
      , directory, dlist, exceptions, filepath, hex, HUnit, mtl, network
@@ -107484,8 +107596,8 @@ self: {
      }:
      mkDerivation {
        pname = "relational-query";
-       version = "0.5.1.0";
-       sha256 = "03n0jg79zirbq2rbp4gpbnr4lrmcv38pv7887d8qi2bm692z5qg5";
+       version = "0.5.1.1";
+       sha256 = "1gs2ip483paqw01wipd5x5vf27l1w887dv7ah0icgjshwg84ff1p";
        buildDepends = [
          array base bytestring containers dlist names-th persistable-record
          sql-words template-haskell text time time-locale-compat
@@ -107522,8 +107634,8 @@ self: {
     ({ mkDerivation, base, relational-query, relational-query-HDBC }:
      mkDerivation {
        pname = "relational-record";
-       version = "0.1.1.0";
-       sha256 = "1rxwlp49a1i4y2qnzjwjwp92ggphd92ikcgxpmkiw6a6frspy3zs";
+       version = "0.1.2.0";
+       sha256 = "00cb3yb4gin6kq7yz3jbkhm372z3vhq97h2l1xk0xja8xi8mfhn6";
        buildDepends = [ base relational-query relational-query-HDBC ];
        homepage = "http://khibino.github.io/haskell-relational-record/";
        description = "Meta package of Relational Record";
@@ -107538,8 +107650,8 @@ self: {
      }:
      mkDerivation {
        pname = "relational-record-examples";
-       version = "0.2.0.0";
-       sha256 = "0gm9gpyhhvlxzw6xykmlw6qhinjfnq5x9fny4yhfi1mfp80gwfhx";
+       version = "0.2.0.2";
+       sha256 = "0jpzn739xl1ylz6aja1czvkg4gjbgkag56pcja31mfx9xiv5jnmf";
        isLibrary = false;
        isExecutable = true;
        buildDepends = [
@@ -108206,14 +108318,13 @@ self: {
      }:
      mkDerivation {
        pname = "resolve-trivial-conflicts";
-       version = "0.2.0.2";
-       sha256 = "1xfafd85q7mk3lb9xy7wfishg3zfzhnvrbzd6r5akmpbpgvf2ddk";
+       version = "0.3.0.1";
+       sha256 = "1a045adxq1n2xjff9ccw6nfb87867w54pihmbybxcwfnkr6ymq26";
        isLibrary = false;
        isExecutable = true;
        buildDepends = [
          ansi-terminal base Diff directory filepath mtl process unix
        ];
-       jailbreak = true;
        homepage = "https://github.com/ElastiLotem/resolve-trivial-conflicts";
        description = "Remove trivial conflict markers in a git repository";
        license = stdenv.lib.licenses.gpl2;
@@ -108434,8 +108545,8 @@ self: {
      }:
      mkDerivation {
        pname = "rest-gen";
-       version = "0.17.1";
-       sha256 = "0rblnqdqajlqkrf5dp03bj16y9nw0kkdjy8ry7j7f6mvkrdccbwl";
+       version = "0.17.1.1";
+       sha256 = "0gr5wv0gb2niq3i7ggzrr5g9hs3fwxss5hivw5ircrbp9s1xm7bl";
        buildDepends = [
          aeson base blaze-html Cabal code-builder directory fclabels
          filepath hashable haskell-src-exts HStringTemplate hxt json-schema
@@ -109979,8 +110090,8 @@ self: {
      }:
      mkDerivation {
        pname = "ruler";
-       version = "0.4.0.1";
-       sha256 = "1caca7353zhpfwrssp2pzmw8jk5sqjxh1nr2h6lpsy964kfa3m69";
+       version = "0.4.0.2";
+       sha256 = "1kcca2h3gvp63s9frnq4dmhaiw5pxhk5ji86bar0cwyrc9all8v5";
        isLibrary = false;
        isExecutable = true;
        buildDepends = [
@@ -110732,15 +110843,16 @@ self: {
      }) {};
 
   "satchmo" = callPackage
-    ({ mkDerivation, array, base, bytestring, containers, directory
-     , lens, minisat, mtl, process
+    ({ mkDerivation, array, async, base, bytestring, containers
+     , directory, minisat, mtl, process
      }:
      mkDerivation {
        pname = "satchmo";
-       version = "2.9.7.1";
-       sha256 = "1wrbf5mnk4f1m40dw2pyp66g76rvhqbxv7qwdx6lha2wjx7z1020";
+       version = "2.9.7.3";
+       sha256 = "1gkb3whi0sv51jxb3x4dpam532fv3wbn1dyp9sc2c7mdjnv24kn8";
        buildDepends = [
-         array base bytestring containers directory lens minisat mtl process
+         array async base bytestring containers directory minisat mtl
+         process
        ];
        testDepends = [ array base ];
        homepage = "https://github.com/jwaldmann/satchmo";
@@ -111384,31 +111496,6 @@ self: {
      }) {};
 
   "scotty" = callPackage
-    ({ mkDerivation, aeson, base, blaze-builder, bytestring
-     , case-insensitive, data-default, hspec, hspec-wai, http-types
-     , lifted-base, monad-control, mtl, regex-compat, text, transformers
-     , transformers-base, wai, wai-extra, warp
-     }:
-     mkDerivation {
-       pname = "scotty";
-       version = "0.9.1";
-       revision = "2";
-       sha256 = "0w07ghnd7l8ibfbl8p74lwn8gxy3z28mp0rlv5crma3yh42irsqm";
-       editedCabalFile = "e37bd4bbb4da4e6d20bd8a29a5c3ca13476643e796a3463a20cbcbd2437bfde7";
-       buildDepends = [
-         aeson base blaze-builder bytestring case-insensitive data-default
-         http-types monad-control mtl regex-compat text transformers
-         transformers-base wai wai-extra warp
-       ];
-       testDepends = [
-         base bytestring hspec hspec-wai http-types lifted-base text wai
-       ];
-       homepage = "https://github.com/scotty-web/scotty";
-       description = "Haskell web framework inspired by Ruby's Sinatra, using WAI and Warp";
-       license = stdenv.lib.licenses.bsd3;
-     }) {};
-
-  "scotty_0_10_1" = callPackage
     ({ mkDerivation, aeson, async, base, blaze-builder, bytestring
      , case-insensitive, data-default-class, directory, hspec, hspec-wai
      , http-types, lifted-base, monad-control, mtl, nats, network
@@ -111756,12 +111843,11 @@ self: {
     ({ mkDerivation, base, SDL2, sdl2, SDL2_image }:
      mkDerivation {
        pname = "sdl2-image";
-       version = "0.1.3.1";
-       sha256 = "1czkx3b9grdka0plgpxrk48vygaxc9mfl772kjpm0wvvwgywk9sf";
+       version = "0.1.3.2";
+       sha256 = "0gps89yy4jzmlh5cdvs94mhmqlakqb99ldall3rirqdfhdv2wysj";
        buildDepends = [ base sdl2 ];
        extraLibraries = [ SDL2 ];
        pkgconfigDepends = [ SDL2 SDL2_image ];
-       jailbreak = true;
        description = "Haskell binding to sdl2-image";
        license = stdenv.lib.licenses.mit;
        hydraPlatforms = stdenv.lib.platforms.none;
@@ -111923,8 +112009,8 @@ self: {
      }:
      mkDerivation {
        pname = "second-transfer";
-       version = "0.5.5.0";
-       sha256 = "0l973282vvgr65iy2q7xrj608lsny3krdw4mx1ia9mfvga8ybrg8";
+       version = "0.5.5.1";
+       sha256 = "06ldrfzp96w7q99nhhhjhay6g0gsvg16x64hwjih1nswcj9rpl6x";
        buildDepends = [
          attoparsec base base16-bytestring binary bytestring conduit
          containers exceptions hashable hashtables hslogger http2 lens
@@ -111937,6 +112023,7 @@ self: {
        ];
        buildTools = [ cpphs ];
        extraLibraries = [ openssl ];
+       jailbreak = true;
        homepage = "https://www.httptwo.com/second-transfer/";
        description = "Second Transfer HTTP/2 web server";
        license = stdenv.lib.licenses.bsd3;
@@ -112654,8 +112741,8 @@ self: {
      }:
      mkDerivation {
        pname = "servant";
-       version = "0.4.2";
-       sha256 = "0zna0x70jlxa2nis4v6knqlyxxkyvv2lmwyixp31xhdcp1yl2lqh";
+       version = "0.4.3";
+       sha256 = "0mqiigf6bxrcnjgizv9kw23xf55ck453z2hz68pzqqbjzs34iqb4";
        buildDepends = [
          aeson attoparsec base bytestring bytestring-conversion
          case-insensitive http-media http-types network-uri
@@ -112675,8 +112762,8 @@ self: {
     ({ mkDerivation, base, blaze-html, http-media, servant }:
      mkDerivation {
        pname = "servant-blaze";
-       version = "0.4.2";
-       sha256 = "0jank0v3cp6cbr571q4pqdfxfbfzm5v8r6rq8csz9yfkhg6x97bg";
+       version = "0.4.3";
+       sha256 = "0pcdslar68yfviacrvyc6rb9d972m1irz4k7wd1xxnm5y60v0wyl";
        buildDepends = [ base blaze-html http-media servant ];
        homepage = "http://haskell-servant.github.io/";
        description = "Blaze-html support for servant";
@@ -112692,8 +112779,8 @@ self: {
      }:
      mkDerivation {
        pname = "servant-client";
-       version = "0.4.2";
-       sha256 = "0rcjqvx76mih4pfhxgrm30czznz68agdhflanqsslv2g33vzls55";
+       version = "0.4.3";
+       sha256 = "0baqrhhhfmyx0389abp503mhh8fjv18i3qhmdsvn46blb4c0cnkx";
        buildDepends = [
          aeson attoparsec base bytestring either exceptions http-client
          http-client-tls http-media http-types network-uri safe servant
@@ -112716,8 +112803,8 @@ self: {
      }:
      mkDerivation {
        pname = "servant-docs";
-       version = "0.4.2";
-       sha256 = "1s70zrs8hiphz94vkcm9gim1xs4dj943a73d2jypyijd4p0k5q5j";
+       version = "0.4.3";
+       sha256 = "13rnn2z9bxrcrxqkndhnbkmsp27907lscsl4vrryxx37i94bf1qj";
        isLibrary = true;
        isExecutable = true;
        buildDepends = [
@@ -112725,7 +112812,7 @@ self: {
          hashable http-media http-types lens servant string-conversions text
          unordered-containers
        ];
-       testDepends = [ aeson base hspec servant string-conversions ];
+       testDepends = [ aeson base hspec lens servant string-conversions ];
        homepage = "http://haskell-servant.github.io/";
        description = "generate API docs for your servant webservice";
        license = stdenv.lib.licenses.bsd3;
@@ -112760,8 +112847,8 @@ self: {
      }:
      mkDerivation {
        pname = "servant-examples";
-       version = "0.4.2";
-       sha256 = "1nmgzkn0nv3p0bzr5ny0yx0g45fzf5qx7s868jp1nq7wbfd3yc0i";
+       version = "0.4.3";
+       sha256 = "0p57731ji84mikvymi458x27i4nk66046xmra6lrvc2fxs5gspmh";
        isLibrary = false;
        isExecutable = true;
        buildDepends = [
@@ -112782,8 +112869,8 @@ self: {
      }:
      mkDerivation {
        pname = "servant-jquery";
-       version = "0.4.2";
-       sha256 = "14ixqnxwm24gc457y0z7rw6z31w2s29sg913vvax641nazfr6yfm";
+       version = "0.4.3";
+       sha256 = "1rslqlg6p7indrcalvq85knwgsi4wdznz5cbblq1i5j4297yc1gj";
        isLibrary = true;
        isExecutable = true;
        buildDepends = [
@@ -112802,8 +112889,8 @@ self: {
     ({ mkDerivation, base, http-media, lucid, servant }:
      mkDerivation {
        pname = "servant-lucid";
-       version = "0.4.2";
-       sha256 = "1aapj4fwjijg9k56x5n9andfwfkffcv37rfvsbpdxhkvwzvmmdpq";
+       version = "0.4.3";
+       sha256 = "0js3f23iwgr2wi54pv37hhsln1x6vmfd5mnsxnzdmppzvb9f19wk";
        buildDepends = [ base http-media lucid servant ];
        homepage = "http://haskell-servant.github.io/";
        description = "Servant support for lucid";
@@ -112899,8 +112986,8 @@ self: {
      }:
      mkDerivation {
        pname = "servant-server";
-       version = "0.4.2";
-       sha256 = "054xfkl6pxc39ahhch8i9s1aj2p3sd10ah9cknknbkjcyhynjzk4";
+       version = "0.4.3";
+       sha256 = "0xi5g3xqn4fl57fbhw2avm26g7k8zmd1c215yw5ria9dbjrvlqha";
        isLibrary = true;
        isExecutable = true;
        buildDepends = [
@@ -113561,8 +113648,8 @@ self: {
      }:
      mkDerivation {
        pname = "shake-language-c";
-       version = "0.7.1";
-       sha256 = "035pqmxqkydl62i1yz2r3a3fzc3p4zw83y5p56ngjjywksy9w68m";
+       version = "0.8.0";
+       sha256 = "1b7yi1cprgiyx06dnhc94shmfx5n1am7zhgiwg6g0bk2gg20im35";
        buildDepends = [
          base data-default-class fclabels process shake split
          unordered-containers
@@ -113840,8 +113927,8 @@ self: {
     ({ mkDerivation, base, binary, bytestring, containers, vector }:
      mkDerivation {
        pname = "shell-escape";
-       version = "0.1.2";
-       sha256 = "1wdkc2l7g33czh6ws735szl3nm5lq8aqjjjcr6xm4l5km67alnxh";
+       version = "0.2.0";
+       sha256 = "0jms5hdl8zrpxwypq9998798krspclivprirrcq59r179alrng72";
        buildDepends = [ base binary bytestring containers vector ];
        homepage = "http://github.com/solidsnack/shell-escape";
        description = "Shell escaping library";
@@ -115211,6 +115298,27 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "sjsp" = callPackage
+    ({ mkDerivation, alex, base, blaze-builder, bytestring, filepath
+     , ghc-prim, happy, language-javascript, syb, unordered-containers
+     }:
+     mkDerivation {
+       pname = "sjsp";
+       version = "0.1.0";
+       revision = "1";
+       sha256 = "0x76hrzm0ikijsf5n425bagzin2x463mcmlnjqvinrb6ni47f4bl";
+       editedCabalFile = "309e00100db2c1bae2d292c485f2dc1a68e1c72a848a2142c3f0637c494dd727";
+       isLibrary = false;
+       isExecutable = true;
+       buildDepends = [
+         base blaze-builder bytestring filepath ghc-prim language-javascript
+         syb unordered-containers
+       ];
+       buildTools = [ alex happy ];
+       description = "Simple JavaScript Profiler";
+       license = stdenv.lib.licenses.mit;
+     }) {};
+
   "skein" = callPackage
     ({ mkDerivation, base, bytestring, cereal, crypto-api, filepath
      , hspec, tagged
@@ -115228,6 +115336,24 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "skeleton" = callPackage
+    ({ mkDerivation, argparser, attoparsec, base, bytestring, filepath
+     , hex, posix-escape, process, time
+     }:
+     mkDerivation {
+       pname = "skeleton";
+       version = "0.1.0.0";
+       sha256 = "10bcw4l4w7myrbpmalg4mvpcyzbrnr8dafsplxkjlb6bnhc33scb";
+       isLibrary = false;
+       isExecutable = true;
+       buildDepends = [
+         argparser attoparsec base bytestring filepath hex posix-escape
+         process time
+       ];
+       description = "a tool to access the OSX keychain";
+       license = stdenv.lib.licenses.mit;
+     }) {};
+
   "skell" = callPackage
     ({ mkDerivation, base, blaze-html, bytestring, containers
      , http-types, text, wai
@@ -115666,6 +115792,7 @@ self: {
        version = "0.3.2";
        sha256 = "0al17y15k7y04dwz5v2bsq003lxzhkhqlbdmbljdr1z17yszcjp6";
        buildDepends = [ aeson base linear vector ];
+       jailbreak = true;
        homepage = "https://github.com/phaazon/smoothie";
        description = "Smooth curves via several splines and polynomials";
        license = stdenv.lib.licenses.bsd3;
@@ -115740,15 +115867,14 @@ self: {
      }:
      mkDerivation {
        pname = "smtp-mail-ng";
-       version = "0.1.0.1";
-       sha256 = "1r177mpyjr3bdnzghfwjamin6jna7qs33b9kfl36qg2l959qn49n";
+       version = "0.1.0.2";
+       sha256 = "0jvjb3ps22p71b0vq7lgfyxmhjbzhsc3crs0cv3qsnkhz4ghvgbh";
        buildDepends = [
          attoparsec base base16-bytestring base64-bytestring bytestring
          crypto-random cryptohash filepath haskeline mime-mail mtl network
          stringsearch text tls transformers transformers-compat x509-store
          x509-system
        ];
-       jailbreak = true;
        homepage = "https://github.com/avieth/smtp-mail-ng";
        description = "An SMTP client EDSL";
        license = stdenv.lib.licenses.bsd3;
@@ -115919,21 +116045,20 @@ self: {
      , blaze-builder, blaze-builder-enumerator, bytestring
      , bytestring-mmap, case-insensitive, containers, deepseq, directory
      , enumerator, filepath, hashable, HUnit, MonadCatchIO-transformers
-     , mtl, random, regex-posix, text, time, unix, unix-compat
-     , unordered-containers, vector, zlib-enum
+     , mtl, old-locale, random, regex-posix, text, time, unix
+     , unix-compat, unordered-containers, vector, zlib-enum
      }:
      mkDerivation {
        pname = "snap-core";
-       version = "0.9.7.0";
-       revision = "1";
-       sha256 = "0ambk7q35v76ww62m4y6j45ga63c141zi3wxkgazybbazk5i36nw";
-       editedCabalFile = "052dd91058bbdf948c75693679c257ae4511bcf8c46428f975d8d31e78e860a4";
+       version = "0.9.7.2";
+       sha256 = "0lgnflwcjyiinrm75dy1flr37bvjn3yljx53cvlsb3ccfnxqwsjj";
        buildDepends = [
          attoparsec attoparsec-enumerator base blaze-builder
          blaze-builder-enumerator bytestring bytestring-mmap
          case-insensitive containers deepseq directory enumerator filepath
-         hashable HUnit MonadCatchIO-transformers mtl random regex-posix
-         text time unix unix-compat unordered-containers vector zlib-enum
+         hashable HUnit MonadCatchIO-transformers mtl old-locale random
+         regex-posix text time unix unix-compat unordered-containers vector
+         zlib-enum
        ];
        homepage = "http://snapframework.com/";
        description = "Snap: A Haskell Web Framework (core interfaces and types)";
@@ -116617,16 +116742,16 @@ self: {
 
   "snaplet-purescript" = callPackage
     ({ mkDerivation, base, configurator, mtl, raw-strings-qq, shelly
-     , snap, snap-core, text
+     , snap, snap-core, text, transformers
      }:
      mkDerivation {
        pname = "snaplet-purescript";
-       version = "0.2.0.0";
-       sha256 = "0f9014v92j5rgy0x6j965d4gay0ipz668rv7rp3m56qnghc8vp5h";
+       version = "0.3.0.0";
+       sha256 = "1dapzqyxj7s6j4drp0szldjxrhm77r4yvbjxs79155a58mj9p1wn";
        buildDepends = [
          base configurator mtl raw-strings-qq shelly snap snap-core text
+         transformers
        ];
-       jailbreak = true;
        description = "Automatic (re)compilation of purescript projects";
        license = stdenv.lib.licenses.mit;
        hydraPlatforms = stdenv.lib.platforms.none;
@@ -117183,8 +117308,8 @@ self: {
     ({ mkDerivation, async, base, bytestring }:
      mkDerivation {
        pname = "socket";
-       version = "0.5.1.0";
-       sha256 = "1kmaw7m44iq1mk643y3kif9g2dmcyirnsv2y7gvf6c12xwrf5adh";
+       version = "0.5.2.0";
+       sha256 = "0mika886mqzjzm14sby3qdlwdlnd20xwl2d2n1faalgimjl1149y";
        buildDepends = [ base bytestring ];
        testDepends = [ async base bytestring ];
        homepage = "https://github.com/lpeterse/haskell-socket";
@@ -118783,9 +118908,9 @@ self: {
      mkDerivation {
        pname = "stack";
        version = "9.9.9";
-       revision = "2";
+       revision = "4";
        sha256 = "1kpsza23b22mg970c2qs943khzad38imzsa1xzki2a3xvfiadana";
-       editedCabalFile = "e8298be03ed84f7858e9ce16a677a272c3a31b7e5180e094fa9ee120b03c6299";
+       editedCabalFile = "5ff7356010e14ec43684d11fcec6e34f47f794cc48a258919568cc27c72ffd34";
        isLibrary = true;
        isExecutable = true;
        buildDepends = [
@@ -120446,10 +120571,9 @@ self: {
     ({ mkDerivation, base, bytestring, text, utf8-string }:
      mkDerivation {
        pname = "string-convert";
-       version = "2.0.0";
-       sha256 = "1wwx7j6qvb93yc0r2hdah1rgbi96r2mjhmibx72d4x7idhn0xsd9";
+       version = "2.0.1";
+       sha256 = "0lx9bc7czwzbf8rky8k02kgi6w3pjfz6ydig9i9ll83zy70l9208";
        buildDepends = [ base bytestring text utf8-string ];
-       jailbreak = true;
        homepage = "https://bitbucket.org/tdammers/string-convert";
        description = "Provide universal string conversions between any two string-like types";
        license = stdenv.lib.licenses.bsd3;
@@ -121546,12 +121670,33 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "sync-mht" = callPackage
+    ({ mkDerivation, array, base, base16-bytestring, byteable
+     , bytestring, cereal, containers, cryptohash, directory, filepath
+     , io-streams, mtl, process, text, transformers, unix
+     }:
+     mkDerivation {
+       pname = "sync-mht";
+       version = "0.2.1.0";
+       sha256 = "1yrpsh676ajcqlaq0vdrdzkdi27l4ih0m2jm7r1wdz3yzw4mrr20";
+       isLibrary = false;
+       isExecutable = true;
+       buildDepends = [
+         array base base16-bytestring byteable bytestring cereal containers
+         cryptohash directory filepath io-streams mtl process text
+         transformers unix
+       ];
+       jailbreak = true;
+       description = "Fast incremental file transfer using Merke-Hash-Trees";
+       license = stdenv.lib.licenses.mit;
+     }) {};
+
   "synchronous-channels" = callPackage
     ({ mkDerivation, base }:
      mkDerivation {
        pname = "synchronous-channels";
-       version = "0.1";
-       sha256 = "0j9ikxd7mihy2ljb8s14lz50nj8x30siffpdznlzs7ps0s97cszh";
+       version = "0.2";
+       sha256 = "0xzpjq3h3mqdi553v7p6xm3i74nvbhz5igjlhfh6snlmr7p1cdvb";
        buildDepends = [ base ];
        description = "Synchronous communication channels";
        license = stdenv.lib.licenses.bsd3;
@@ -122868,10 +123013,9 @@ self: {
     ({ mkDerivation, base, containers, mtl, safe, text }:
      mkDerivation {
        pname = "tamper";
-       version = "0.4.0";
-       sha256 = "16ca5c4w0qmar1nv4m91cwrjw38ql76lphxd25d063d5v77lwr8z";
+       version = "0.4.1";
+       sha256 = "1nkfcai9l6z6hvjixq8nny1466f8shc5432hr8l17llqcwpbzv5p";
        buildDepends = [ base containers mtl safe text ];
-       jailbreak = true;
        description = "An HTML templating system similar to Blaze, implemented as a monad transformer of sorts";
        license = stdenv.lib.licenses.bsd3;
        hydraPlatforms = stdenv.lib.platforms.none;
@@ -122888,6 +123032,23 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "tar_0_4_2_0" = callPackage
+    ({ mkDerivation, array, base, bytestring, directory, filepath
+     , old-time, QuickCheck, tasty, tasty-quickcheck, time
+     }:
+     mkDerivation {
+       pname = "tar";
+       version = "0.4.2.0";
+       sha256 = "00z0bdj29hrhxwwj1drsn137ny1ia5rl0f64m876f10fr4p5j2c3";
+       buildDepends = [ array base bytestring directory filepath time ];
+       testDepends = [
+         array base bytestring directory filepath old-time QuickCheck tasty
+         tasty-quickcheck time
+       ];
+       description = "Reading, writing and manipulating \".tar\" archive files.";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "tardis" = callPackage
     ({ mkDerivation, base, mtl }:
      mkDerivation {
@@ -123567,8 +123728,8 @@ self: {
     ({ mkDerivation, base, Boolean }:
      mkDerivation {
        pname = "temporal-media";
-       version = "0.5.0";
-       sha256 = "1pjw781rkki4nv0xsn35jhrad2xxxks0lpqsx3zg5rzrvvxqd3b6";
+       version = "0.6.0";
+       sha256 = "0mpi97lqh4mqv6flgcrwzbv8ihlxhxzf5z2xd87wxpzvcglx2n0n";
        buildDepends = [ base Boolean ];
        homepage = "https://github.com/anton-k/temporal-media";
        description = "data types for temporal media";
@@ -123579,8 +123740,8 @@ self: {
     ({ mkDerivation, base, data-default, temporal-media, vector }:
      mkDerivation {
        pname = "temporal-music-notation";
-       version = "0.4.0";
-       sha256 = "1flf4dfyj87yiyhqdrm2bph8vcsmhp5rwg3k4npbxxzdgr8z9g92";
+       version = "0.4.1";
+       sha256 = "09mx6bfz0lxyy7z0srl4372qv42fyymc5pqxkyxj7mhf872y4biv";
        buildDepends = [ base data-default temporal-media vector ];
        homepage = "https://github.com/anton-k/temporal-music-notation";
        description = "music notation";
@@ -124661,8 +124822,8 @@ self: {
      }:
      mkDerivation {
        pname = "text-show";
-       version = "1";
-       sha256 = "1ac8pk2nsbzl080r2qqm6jmkq3yq4rx6czfdsfkxydxyklrvi83d";
+       version = "2";
+       sha256 = "152nccaz9m337rrv7i6z1vjj73xdcp410fgxcs8imhr125fs6r2z";
        buildDepends = [
          array base base-compat bytestring bytestring-builder containers
          generic-deriving ghc-prim integer-gmp nats semigroups tagged
@@ -124689,8 +124850,10 @@ self: {
      }:
      mkDerivation {
        pname = "text-show-instances";
-       version = "1";
-       sha256 = "0503bb8yy952gs5ywndm0qm2v1z5xm1k09vcwrnsxx979irmpksh";
+       version = "2";
+       revision = "1";
+       sha256 = "1k9blq670jsph1jkrw01hf4k6ga8i3xy5nfs299xj17nni8hjci8";
+       editedCabalFile = "e0610e22ef001feb5271583c1719c2ebdef23ac4179deaabba23a21d6c2ac7b0";
        buildDepends = [
          base base-compat bifunctors binary bytestring containers directory
          haskeline hoopl hpc old-locale old-time pretty random semigroups
@@ -124773,6 +124936,23 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "text1" = callPackage
+    ({ mkDerivation, base, binary, directory, doctest, filepath, lens
+     , QuickCheck, semigroups, template-haskell, text
+     }:
+     mkDerivation {
+       pname = "text1";
+       version = "0.0.1";
+       sha256 = "15nb4izk4j0hg2hhynrjd5vjnpg240rlcp489w4hm4b4nmpdd4cj";
+       buildDepends = [ base binary lens semigroups text ];
+       testDepends = [
+         base directory doctest filepath QuickCheck template-haskell
+       ];
+       homepage = "https://github.com/NICTA/text1";
+       description = "Non-empty values of `Data.Text`.";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "textPlot" = callPackage
     ({ mkDerivation, array, base }:
      mkDerivation {
@@ -125239,21 +125419,23 @@ self: {
   "themplate" = callPackage
     ({ mkDerivation, base, configurator, directory, either, errors
      , filepath, optparse-applicative, text, transformers
+     , transformers-compat
      }:
      mkDerivation {
        pname = "themplate";
-       version = "1.1";
+       version = "1.2";
        revision = "1";
-       sha256 = "1bjiiwhbwq6am7269gzsaqq6hpvy45x4pkq0kq7qm2j4bzrmfr14";
-       editedCabalFile = "02239e2cf43fa8f2b4fc9c68ad3561aef40af2348e962cb4f2bb5d7d839ad8da";
+       sha256 = "0ingf6f4d2a93jdcw0lij7l02gr7mfk97svhda94wx0k1lmj2li3";
+       editedCabalFile = "9562873914a204ed7daf91844f70592385a93b6c348798dc8772b439436ca109";
        isLibrary = false;
        isExecutable = true;
        buildDepends = [
          base configurator directory either errors filepath
-         optparse-applicative text transformers
+         optparse-applicative text transformers transformers-compat
        ];
+       jailbreak = true;
        homepage = "http://github.com/bennofs/themplate/";
-       description = "themplate";
+       description = "Project templating tool";
        license = stdenv.lib.licenses.bsd3;
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
@@ -127921,19 +128103,20 @@ self: {
 
   "turtle" = callPackage
     ({ mkDerivation, async, base, clock, directory, doctest, foldl
-     , managed, process, system-fileio, system-filepath, temporary, text
-     , time, transformers, unix
+     , hostname, managed, optional-args, optparse-applicative, process
+     , system-fileio, system-filepath, temporary, text, time
+     , transformers, unix
      }:
      mkDerivation {
        pname = "turtle";
-       version = "1.1.1";
-       sha256 = "1dgzzsylbri2p8wyf1xfww8la9vccb7yac0b0g2lf0b1ix4gphym";
+       version = "1.2.0";
+       sha256 = "0324bh4kb7xqdzvgqr6hbm7cna4a4d6x907l73sx63j87hqiwah4";
        buildDepends = [
-         async base clock directory foldl managed process system-fileio
-         system-filepath temporary text time transformers unix
+         async base clock directory foldl hostname managed optional-args
+         optparse-applicative process system-fileio system-filepath
+         temporary text time transformers unix
        ];
        testDepends = [ base doctest ];
-       jailbreak = true;
        description = "Shell programming, Haskell-style";
        license = stdenv.lib.licenses.bsd3;
      }) {};
@@ -129755,6 +129938,24 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "uniform-io" = callPackage
+    ({ mkDerivation, attoparsec, base, bytestring, data-default-class
+     , iproute, network, openssl, transformers, word8
+     }:
+     mkDerivation {
+       pname = "uniform-io";
+       version = "0.1.0.0";
+       sha256 = "1xb934jvj3gk6lw2xdm22p8yayybqk823pk0ssly7kz2dyzrqzz7";
+       buildDepends = [
+         attoparsec base bytestring data-default-class iproute network
+         transformers word8
+       ];
+       extraLibraries = [ openssl ];
+       homepage = "https://sealgram.com/git/haskell/uniform-io";
+       description = "Uniform IO over files, network, watever";
+       license = stdenv.lib.licenses.mit;
+     }) { inherit (pkgs) openssl;};
+
   "uniform-pair" = callPackage
     ({ mkDerivation, base, ShowF }:
      mkDerivation {
@@ -132810,8 +133011,8 @@ self: {
      }:
      mkDerivation {
        pname = "wai";
-       version = "3.0.2.3";
-       sha256 = "1mrry121xjgd2h69m35khgsiicrwhg7ysa7mzm6bw3ac41xc08ns";
+       version = "3.0.3.0";
+       sha256 = "044djv5r10g92cg7wvz8zlxsyjhnr2mqb1gf3gr9a1rjlcsv8zn4";
        buildDepends = [
          base blaze-builder bytestring http-types network text vault
        ];
@@ -132832,8 +133033,8 @@ self: {
      }:
      mkDerivation {
        pname = "wai-app-file-cgi";
-       version = "3.0.7";
-       sha256 = "0ggxsnqk0wc47l98sykhyq7qwfys58y4048v1pqdd35w4p92qhbr";
+       version = "3.0.8";
+       sha256 = "0adj4s8hxr9rpmqf6899cjaw6axwzw5jvw325wv2qxv3yp4x3w5x";
        buildDepends = [
          array attoparsec attoparsec-conduit base blaze-builder blaze-html
          bytestring case-insensitive conduit conduit-extra containers
@@ -132861,8 +133062,8 @@ self: {
      }:
      mkDerivation {
        pname = "wai-app-static";
-       version = "3.1.0";
-       sha256 = "0zajsav11v5r6c5k2ls1cfc6bz1zalasxpl03hvh5fww5f1vn9iq";
+       version = "3.1.0.1";
+       sha256 = "1z542ivy5x4qj9kizkbbvhz5pn54rcxrs6cc52199khxkfc07gdm";
        isLibrary = true;
        isExecutable = true;
        buildDepends = [
@@ -132974,8 +133175,8 @@ self: {
      }:
      mkDerivation {
        pname = "wai-extra";
-       version = "3.0.7.1";
-       sha256 = "1jfpqqnavk2v7wn4fhpc1fish67wfyicmsl84l234v47wsbz9r13";
+       version = "3.0.8.1";
+       sha256 = "0ay8cjxk8lplcdg2l89m9dprf6z6pcypljdsiwb17hkyiv36myl9";
        buildDepends = [
          ansi-terminal base base64-bytestring blaze-builder bytestring
          case-insensitive containers cookie data-default-class deepseq
@@ -132984,8 +133185,8 @@ self: {
          unix unix-compat vault void wai wai-logger word8
        ];
        testDepends = [
-         base blaze-builder bytestring cookie fast-logger hspec http-types
-         HUnit resourcet text time transformers wai zlib
+         base blaze-builder bytestring case-insensitive cookie fast-logger
+         hspec http-types HUnit resourcet text time transformers wai zlib
        ];
        homepage = "http://github.com/yesodweb/wai";
        description = "Provides some basic WAI handlers and middleware";
@@ -133063,8 +133264,8 @@ self: {
      }:
      mkDerivation {
        pname = "wai-handler-launch";
-       version = "3.0.0.3";
-       sha256 = "1nx90z37f296gqh0m9rgvw7899jizpclb6fbwhp98byy9s2ssabl";
+       version = "3.0.0.4";
+       sha256 = "1qfisa19rhlx241jr90mz8x844pp5yx1z8xbmflvj81gpnvsgh7i";
        buildDepends = [
          base blaze-builder bytestring http-types process streaming-commons
          transformers wai warp
@@ -133845,8 +134046,8 @@ self: {
      }:
      mkDerivation {
        pname = "wai-websockets";
-       version = "3.0.0.5";
-       sha256 = "1gqivkjdvln6xpkhcr6k75gk2qvjp6mr691902w3m6xpcdv1q5z0";
+       version = "3.0.0.6";
+       sha256 = "0i8r5r8l3z6fk7a466n48ralq33kdihc8g91ia4z22cqhl0zkizy";
        isLibrary = true;
        isExecutable = true;
        buildDepends = [
@@ -133855,7 +134056,7 @@ self: {
          websockets
        ];
        homepage = "http://github.com/yesodweb/wai";
-       description = "Provide a bridge betweeen WAI and the websockets package";
+       description = "Provide a bridge between WAI and the websockets package";
        license = stdenv.lib.licenses.mit;
      }) {};
 
@@ -136928,8 +137129,8 @@ self: {
     ({ mkDerivation, base, deepseq, text }:
      mkDerivation {
        pname = "xml-types";
-       version = "0.3.5";
-       sha256 = "0vddb60a5yi7cxwyxik7vwnlrpwmvfz7jq20pdp355q61qc842sa";
+       version = "0.3.6";
+       sha256 = "1jgqxsa9p2q3h6nymbfmvhldqrqlwrhrzmwadlyc0li50x0d8dwr";
        buildDepends = [ base deepseq text ];
        homepage = "https://john-millikin.com/software/haskell-xml/";
        description = "Basic types for representing XML";
@@ -137273,7 +137474,6 @@ self: {
        homepage = "https://github.com/supki/xmonad-screenshot";
        description = "Workspaces screenshooting utility for XMonad";
        license = stdenv.lib.licenses.mit;
-       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "xmonad-utils" = callPackage
@@ -139263,6 +139463,23 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "yesod-sass" = callPackage
+    ({ mkDerivation, base, data-default, hsass, shakespeare
+     , template-haskell, text, yesod-core
+     }:
+     mkDerivation {
+       pname = "yesod-sass";
+       version = "0.1.0.0";
+       sha256 = "0faizfb44i52yijakfnazx86fs78vi9gnbiw2w42rh4r8gncjbvx";
+       buildDepends = [
+         base data-default hsass shakespeare template-haskell text
+         yesod-core
+       ];
+       jailbreak = true;
+       description = "A simple quasiquoter to include sass code in yesod";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "yesod-session-redis" = callPackage
     ({ mkDerivation, base, binary, bytestring, containers, cookie
      , hedis, mtl, network, pool-conduit, random, text, time, wai
@@ -139340,20 +139557,19 @@ self: {
     ({ mkDerivation, aeson, base, blaze-builder, blaze-markup
      , bytestring, data-default, directory, filepath, hamlet, hspec
      , HUnit, language-javascript, mime-types, shakespeare
-     , shakespeare-css, shakespeare-js, template-haskell, text, yesod
-     , yesod-core, yesod-static, yesod-test
+     , template-haskell, text, yesod, yesod-core, yesod-static
+     , yesod-test
      }:
      mkDerivation {
        pname = "yesod-static-angular";
-       version = "0.1.4";
-       sha256 = "0yqqy2fpnrqhlljm3pk8d5nxqp1fiqnyf1cd4h6c8yfrs46w41d5";
+       version = "0.1.5";
+       sha256 = "0ddw307vd1zaknxc74y1k0hwg872y651snk1g72jqhbigcixl3ck";
        isLibrary = true;
        isExecutable = true;
        buildDepends = [
          aeson base blaze-builder blaze-markup bytestring data-default
          directory filepath hamlet language-javascript mime-types
-         shakespeare shakespeare-css shakespeare-js template-haskell text
-         yesod yesod-core yesod-static
+         shakespeare template-haskell text yesod yesod-core yesod-static
        ];
        testDepends = [
          base bytestring hamlet hspec HUnit shakespeare template-haskell
@@ -140683,6 +140899,17 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "zoom-refs" = callPackage
+    ({ mkDerivation, base, lens, stm }:
+     mkDerivation {
+       pname = "zoom-refs";
+       version = "0.0.0.0";
+       sha256 = "0pbnwgsfl4rgmgsq30snki34xh9iaky01jnxycppf0h93mbdv01p";
+       buildDepends = [ base lens stm ];
+       description = "Zoom (~ Functor) and pairing (~ Applicative) for mutable references";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "zot" = callPackage
     ({ mkDerivation, base, monads-tf }:
      mkDerivation {
diff --git a/pkgs/development/interpreters/jruby/default.nix b/pkgs/development/interpreters/jruby/default.nix
index bc76e334b551..bc76abb45460 100644
--- a/pkgs/development/interpreters/jruby/default.nix
+++ b/pkgs/development/interpreters/jruby/default.nix
@@ -3,11 +3,11 @@
 stdenv.mkDerivation rec {
   name = "jruby-${version}";
 
-  version = "1.7.20.1";
+  version = "1.7.21";
 
   src = fetchurl {
     url = "http://jruby.org.s3.amazonaws.com/downloads/${version}/jruby-bin-${version}.tar.gz";
-    sha1 = "6a6e701a3a5769ec5d53a78660521c37da36e41f";
+    sha1 = "4955b69a913b22f96bd599eff2a133d8d1ed42c6";
   };
 
   buildInputs = [ makeWrapper ];
diff --git a/pkgs/development/interpreters/python/2.6/default.nix b/pkgs/development/interpreters/python/2.6/default.nix
index 29e3ecd20b1f..28f53f8ca95f 100644
--- a/pkgs/development/interpreters/python/2.6/default.nix
+++ b/pkgs/development/interpreters/python/2.6/default.nix
@@ -9,7 +9,6 @@ let
   majorVersion = "2.6";
   version = "${majorVersion}.9";
 
-  # python 2.6 will receive security fixes until Oct 2013
   src = fetchurl {
     url = "http://www.python.org/ftp/python/${version}/Python-${version}.tar.xz";
     sha256 = "0hbfs2691b60c7arbysbzr0w9528d5pl8a4x7mq5psh6a2cvprya";
@@ -118,6 +117,10 @@ let
       license = stdenv.lib.licenses.psfl;
       platforms = stdenv.lib.platforms.all;
       maintainers = with stdenv.lib.maintainers; [ simons chaoflow iElectric ];
+      # If you want to use Python 2.6, remove "broken = true;" at your own
+      # risk.  Python 2.6 has known security vulnerabilities is not receiving
+      # security updates as of October 2013.
+      broken = true;
     };
   };
 
diff --git a/pkgs/development/interpreters/ruby/bundler-env/default-gem-config.nix b/pkgs/development/interpreters/ruby/bundler-env/default-gem-config.nix
index 38b7ce530ae4..b4e04f6ec904 100644
--- a/pkgs/development/interpreters/ruby/bundler-env/default-gem-config.nix
+++ b/pkgs/development/interpreters/ruby/bundler-env/default-gem-config.nix
@@ -18,14 +18,13 @@
 # (to make gems behave if necessary).
 
 { lib, fetchurl, writeScript, ruby, libxml2, libxslt, python, stdenv, which
-, libiconv, postgresql, v8, v8_3_16_14, clang, sqlite, zlib, imagemagick
+, libiconv, postgresql, v8_3_16_14, clang, sqlite, zlib, imagemagick
 , pkgconfig , ncurses, xapian, gpgme, utillinux, fetchpatch, tzdata, icu, libffi
 , cmake, libssh2, openssl, mysql
 }:
 
 let
   v8 = v8_3_16_14;
-
 in
 
 {
@@ -46,13 +45,6 @@ in
     buildFlags = [
       "--with-system-v8=true"
     ];
-    patches = [
-      # see: https://github.com/cowboyd/libv8/pull/161
-      (fetchpatch {
-        url = https://github.com/cstrahan/libv8/commit/c79378bf346d4ed2429af36d745d17c478ffbe96.patch;
-        sha256 = "1l6572cmigc22g249jj8h0xlbig88mj43kdqdbimhw2pmpv3q0rs";
-      })
-    ];
   };
 
   mysql2 = attrs: {
diff --git a/pkgs/development/interpreters/ruby/ruby-2.2.2.nix b/pkgs/development/interpreters/ruby/ruby-2.2.2.nix
index d75c21fa0b10..9e015ce9d7b6 100644
--- a/pkgs/development/interpreters/ruby/ruby-2.2.2.nix
+++ b/pkgs/development/interpreters/ruby/ruby-2.2.2.nix
@@ -103,7 +103,7 @@ stdenv.mkDerivation rec {
   passthru = rec {
     majorVersion = "2";
     minorVersion = "2";
-    teenyVersion = "0";
+    teenyVersion = "2";
     patchLevel = "0";
     rubyEngine = "ruby";
     libPath = "lib/${rubyEngine}/${majorVersion}.${minorVersion}.${teenyVersion}";
diff --git a/pkgs/development/libraries/gdal/default.nix b/pkgs/development/libraries/gdal/default.nix
index fe7d0869fbd0..22a721191dda 100644
--- a/pkgs/development/libraries/gdal/default.nix
+++ b/pkgs/development/libraries/gdal/default.nix
@@ -3,12 +3,12 @@
 , libpng }:
 
 composableDerivation.composableDerivation {} (fixed: rec {
-  version = "1.11.2";
+  version = "2.0.0";
   name = "gdal-${version}";
 
   src = fetchurl {
     url = "http://download.osgeo.org/gdal/${version}/${name}.tar.gz";
-    sha256 = "66bc8192d24e314a66ed69285186d46e6999beb44fc97eeb9c76d82a117c0845";
+    sha256 = "53761563ff53c5bf27bff7c4d6cab8bb1634baccefda05348e0f3b7acaf4c9e6";
   };
 
   buildInputs = [ unzip libjpeg libtiff libpng python pythonPackages.numpy proj openssl ];
diff --git a/pkgs/development/libraries/gdal/gdal-1_11_2.nix b/pkgs/development/libraries/gdal/gdal-1_11_2.nix
new file mode 100644
index 000000000000..fe7d0869fbd0
--- /dev/null
+++ b/pkgs/development/libraries/gdal/gdal-1_11_2.nix
@@ -0,0 +1,59 @@
+{ stdenv, fetchurl, composableDerivation, unzip, libjpeg, libtiff, zlib
+, postgresql, mysql, libgeotiff, python, pythonPackages, proj, geos, openssl
+, libpng }:
+
+composableDerivation.composableDerivation {} (fixed: rec {
+  version = "1.11.2";
+  name = "gdal-${version}";
+
+  src = fetchurl {
+    url = "http://download.osgeo.org/gdal/${version}/${name}.tar.gz";
+    sha256 = "66bc8192d24e314a66ed69285186d46e6999beb44fc97eeb9c76d82a117c0845";
+  };
+
+  buildInputs = [ unzip libjpeg libtiff libpng python pythonPackages.numpy proj openssl ];
+
+  patches = [
+    # This ensures that the python package is installed into gdal's prefix,
+    # rather than trying to install into python's prefix.
+    ./python.patch
+  ];
+
+  # Don't use optimization for gcc >= 4.3. That's said to be causing segfaults.
+  # Unset CC and CXX as they confuse libtool.
+  preConfigure = "export CFLAGS=-O0 CXXFLAGS=-O0; unset CC CXX";
+
+  configureFlags = [
+    "--with-jpeg=${libjpeg}"
+    "--with-libtiff=${libtiff}" # optional (without largetiff support)
+    "--with-libpng=${libpng}"   # optional
+    "--with-libz=${zlib}"       # optional
+
+    "--with-pg=${postgresql}/bin/pg_config"
+    "--with-mysql=${mysql.lib}/bin/mysql_config"
+    "--with-geotiff=${libgeotiff}"
+    "--with-python"               # optional
+    "--with-static-proj4=${proj}" # optional
+    "--with-geos=${geos}/bin/geos-config"# optional
+  ];
+
+  # Prevent this:
+  #
+  #   Checking .pth file support in /nix/store/xkrmb8xnvqxzjwsdmasqmsdh1a5y2y99-gdal-1.11.2/lib/python2.7/site-packages/
+  #   /nix/store/pbi1lgank10fy0xpjckbdpgacqw34dsz-python-2.7.9/bin/python -E -c pass
+  #   TEST FAILED: /nix/store/xkrmb8xnvqxzjwsdmasqmsdh1a5y2y99-gdal-1.11.2/lib/python2.7/site-packages/ does NOT support .pth files
+  #   error: bad install directory or PYTHONPATH
+  preBuild = ''
+    pythonInstallDir=$out/lib/${python.libPrefix}/site-packages
+    mkdir -p $pythonInstallDir
+    export PYTHONPATH=''${PYTHONPATH:+''${PYTHONPATH}:}$pythonInstallDir
+  '';
+
+  meta = {
+    description = "Translator library for raster geospatial data formats";
+    homepage = http://www.gdal.org/;
+    license = stdenv.lib.licenses.mit;
+    maintainers = [ stdenv.lib.maintainers.marcweber ];
+    platforms = stdenv.lib.platforms.linux;
+  };
+})
diff --git a/pkgs/development/libraries/libressl/default.nix b/pkgs/development/libraries/libressl/default.nix
index ef4638eea27b..093f644c0962 100644
--- a/pkgs/development/libraries/libressl/default.nix
+++ b/pkgs/development/libraries/libressl/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "libressl-${version}";
-  version = "2.1.6";
+  version = "2.2.1";
 
   src = fetchurl {
     url    = "mirror://openbsd/LibreSSL/${name}.tar.gz";
-    sha256 = "1a2k6sby6a1d0hf4hns6d13cvyck2i0figbkf1q0301vggcnv0jg";
+    sha256 = "0bapzvxrg09p4hlzdhsvk0ljc3gsjj4ixjpf09dn0fzwmd81fcsg";
   };
 
   enableParallelBuilding = true;
diff --git a/pkgs/development/libraries/libspatialite/default.nix b/pkgs/development/libraries/libspatialite/default.nix
index 43c2a9089b73..eb3917b11928 100644
--- a/pkgs/development/libraries/libspatialite/default.nix
+++ b/pkgs/development/libraries/libspatialite/default.nix
@@ -4,7 +4,7 @@ stdenv.mkDerivation rec {
   name = "libspatialite-4.2.0";
 
   src = fetchurl {
-    url = "http://www.gaia-gis.it/gaia-sins/${name}.tar.gz";
+    url = "http://www.gaia-gis.it/gaia-sins/libspatialite-sources/${name}.tar.gz";
     sha256 = "0b9ipmp09y2ij7yajyjsh0zcwps8n5g88lzfzlkph33lail8l4wz";
   };
 
diff --git a/pkgs/development/libraries/libunistring/default.nix b/pkgs/development/libraries/libunistring/default.nix
index 667d620c501c..7f32f37a704d 100644
--- a/pkgs/development/libraries/libunistring/default.nix
+++ b/pkgs/development/libraries/libunistring/default.nix
@@ -1,24 +1,24 @@
 { fetchurl, stdenv, libiconv }:
 
-stdenv.mkDerivation (rec {
-  name = "libunistring-0.9.3";
+stdenv.mkDerivation rec {
+  name = "libunistring-0.9.6";
 
   src = fetchurl {
     url = "mirror://gnu/libunistring/${name}.tar.gz";
-    sha256 = "18q620269xzpw39dwvr9zpilnl2dkw5z5kz3mxaadnpv4k3kw3b1";
+    sha256 = "0ixxmgpgh2v8ifm6hbwsjxl023myk3dfnj7wnvmqjivza31fw9cn";
   };
 
   patches = stdenv.lib.optional stdenv.isDarwin [ ./clang.patch ];
 
-  propagatedBuildInputs =
-    stdenv.lib.optional ((! (stdenv ? glibc))
-                         || (stdenv ? cross &&
-                             stdenv.cross.config == "i686-pc-mingw32"))
-     libiconv;
+  propagatedBuildInputs = [ libiconv ];
+
+  configureFlags = [
+    "--with-libiconv-prefix=${libiconv}"
+  ];
 
   # XXX: There are test failures on non-GNU systems, see
   # http://lists.gnu.org/archive/html/bug-libunistring/2010-02/msg00004.html .
-  doCheck = (stdenv ? glibc);
+  doCheck = stdenv ? glibc;
 
   meta = {
     homepage = http://www.gnu.org/software/libunistring/;
@@ -52,19 +52,3 @@ stdenv.mkDerivation (rec {
     platforms = stdenv.lib.platforms.all;
   };
 }
-
-//
-
-# On Cygwin Libtool is unable to find `libiconv.dll' if there's no explicit
-# `-L/path/to/libiconv' argument on the linker's command line; and since it
-# can't find the dll, it will only create a static library.
-(if (stdenv ? glibc)
- then {}
- else { configureFlags = "--with-libiconv-prefix=${libiconv}"; })
-
-//
-
-# Don't run the native `strip' when cross-compiling.
-(if (stdenv ? cross)
- then { dontStrip = true; }
- else { }))
diff --git a/pkgs/development/libraries/libxcomp/default.nix b/pkgs/development/libraries/libxcomp/default.nix
index 3be3598169ed..b922778de0ed 100644
--- a/pkgs/development/libraries/libxcomp/default.nix
+++ b/pkgs/development/libraries/libxcomp/default.nix
@@ -1,15 +1,16 @@
 { stdenv, fetchurl, autoreconfHook, libjpeg, libpng12, libX11, zlib }:
 
-let version = "3.5.0.31"; in
+let version = "3.5.0.32"; in
 stdenv.mkDerivation {
   name = "libxcomp-${version}";
 
   src = fetchurl {
-    sha256 = "1hi3xrjzr37zs72djw3k7gj6mn2bsihfw1iysl8l0i85jl6sdfkd";
+    sha256 = "02n5bdc1jsq999agb4w6dmdj5l2wlln2lka84qz6rpswwc59zaxm";
     url = "http://code.x2go.org/releases/source/nx-libs/nx-libs-${version}-lite.tar.gz";
   };
 
   meta = with stdenv.lib; {
+    inherit version;
     description = "NX compression library";
     homepage = "http://wiki.x2go.org/doku.php/wiki:libs:nx-libs";
     license = licenses.gpl2;
diff --git a/pkgs/development/libraries/openscenegraph/default.nix b/pkgs/development/libraries/openscenegraph/default.nix
index 9be9f8386326..5fb73eae276a 100644
--- a/pkgs/development/libraries/openscenegraph/default.nix
+++ b/pkgs/development/libraries/openscenegraph/default.nix
@@ -1,6 +1,6 @@
 x@{builderDefsPackage
   , cmake, giflib, libjpeg, libtiff, lib3ds, freetype, libpng
-  , coin3d, jasper, gdal, xproto, libX11, libXmu, freeglut, mesa
+  , coin3d, jasper, gdal_1_11_2, xproto, libX11, libXmu, freeglut, mesa
   , doxygen, ffmpeg, xineLib, unzip, zlib, openal, libxml2
   , curl, a52dec, faad2, gdk_pixbuf, pkgconfig, kbproto, SDL
   , qt4, poppler, librsvg, gtk
diff --git a/pkgs/development/libraries/shhmsg/default.nix b/pkgs/development/libraries/shhmsg/default.nix
new file mode 100644
index 000000000000..5f14a7bb5ee5
--- /dev/null
+++ b/pkgs/development/libraries/shhmsg/default.nix
@@ -0,0 +1,20 @@
+{ stdenv, fetchurl }:
+
+stdenv.mkDerivation rec {
+  name = "shhmsg-1.4.2";
+
+  src = fetchurl {
+    url = "http://shh.thathost.com/pub-unix/files/${name}.tar.gz";
+    sha256 = "0ax02fzqpaxr7d30l5xbndy1s5vgg1ag643c7zwiw2wj1czrxil8";
+  };
+
+  installFlags = "INSTBASEDIR=$(out)";
+
+  meta = with stdenv.lib; {
+    description = "A library for displaying messages";
+    homepage = http://shh.thathost.com/pub-unix/;
+    license = licenses.artistic1;
+    platforms = platforms.linux;
+  };
+}
+
diff --git a/pkgs/development/libraries/shhopt/default.nix b/pkgs/development/libraries/shhopt/default.nix
new file mode 100644
index 000000000000..dbac4c859619
--- /dev/null
+++ b/pkgs/development/libraries/shhopt/default.nix
@@ -0,0 +1,19 @@
+{ stdenv, fetchurl }:
+
+stdenv.mkDerivation rec {
+  name = "shhopt-1.1.7";
+
+  src = fetchurl {
+    url = "http://shh.thathost.com/pub-unix/files/${name}.tar.gz";
+    sha256 = "0yd6bl6qw675sxa81nxw6plhpjf9d2ywlm8a5z66zyjf28sl7sds";
+  };
+
+  installFlags = "INSTBASEDIR=$(out)";
+
+  meta = with stdenv.lib; {
+    description = "A library for parsing command line options";
+    homepage = http://shh.thathost.com/pub-unix/;
+    license = licenses.artistic1;
+    platforms = platforms.linux;
+  };
+}
diff --git a/pkgs/development/libraries/v8/3.16.14.nix b/pkgs/development/libraries/v8/3.16.14.nix
index b5e1b1593215..ba3aae5cf70a 100644
--- a/pkgs/development/libraries/v8/3.16.14.nix
+++ b/pkgs/development/libraries/v8/3.16.14.nix
@@ -8,12 +8,12 @@ in
 
 stdenv.mkDerivation rec {
   name = "v8-${version}";
-  version = "3.16.14";
+  version = "3.16.14.11";
 
   src = fetchurl {
     url = "https://commondatastorage.googleapis.com/chromium-browser-official/"
         + "${name}.tar.bz2";
-    sha256 = "073f33zcb7205jp9g5ha5d7j2hfa98zs0jql572nb552z0xw3rkz";
+    sha256 = "1gpf2xvhxfs5ll3m2jlslsx9jfjbmrbz55iq362plflrvf8mbxhj";
   };
 
   configurePhase = stdenv.lib.optionalString stdenv.isDarwin ''
diff --git a/pkgs/development/libraries/vigra/default.nix b/pkgs/development/libraries/vigra/default.nix
index 04bef5ef41c3..28852fd97d66 100644
--- a/pkgs/development/libraries/vigra/default.nix
+++ b/pkgs/development/libraries/vigra/default.nix
@@ -1,28 +1,31 @@
-{ stdenv, fetchurl, cmake, libtiff, libpng, libjpeg, doxygen, python,
-  fftw, fftwSinglePrec, hdf5, boost, numpy }:
+{ stdenv, fetchurl, boost, cmake, doxygen, fftw, fftwSinglePrec, hdf5, ilmbase
+, libjpeg, libpng, libtiff, numpy, openexr, python }:
+
 stdenv.mkDerivation rec {
-  name = "vigra-1.9.0";
+  name = "vigra-${version}";
+  version = "1.10.0";
 
   src = fetchurl {
-    urls = [
-      "${meta.homepage}/${name}-src.tar.gz"
-      "${meta.homepage}-old-versions/${name}-src.tar.gz"
-      ];
-    sha256 = "00fg64da6dj9k42d90dz6y7x91xw1xqppcla14im74m4afswrgcg";
+    url = "https://github.com/ukoethe/vigra/archive/Version-${stdenv.lib.replaceChars ["."] ["-"] version}.tar.gz";
+    sha256 = "1y3yii8wnyz68n0mzcmjylwd6jchqa3l913v39l2zsd2rv5nyvs0";
   };
 
-  buildInputs = [ cmake fftw fftwSinglePrec libtiff libpng libjpeg python boost
-    numpy hdf5 ];
+  NIX_CFLAGS_COMPILE = "-I${ilmbase}/include/OpenEXR";
+
+  buildInputs = [ boost cmake fftw fftwSinglePrec hdf5 ilmbase libjpeg libpng
+                  libtiff numpy openexr python ];
 
   preConfigure = "cmakeFlags+=\" -DVIGRANUMPY_INSTALL_DIR=$out/lib/${python.libPrefix}/site-packages\"";
-  cmakeFlags = stdenv.lib.optionals (stdenv.system == "x86_64-linux")
-      [ "-DCMAKE_CXX_FLAGS=-fPIC" "-DCMAKE_C_FLAGS=-fPIC" ];
 
-  meta = {
+  cmakeFlags = [ "-DWITH_OPENEXR=1" ]
+            ++ stdenv.lib.optionals (stdenv.system == "x86_64-linux")
+                  [ "-DCMAKE_CXX_FLAGS=-fPIC" "-DCMAKE_C_FLAGS=-fPIC" ];
+
+  meta = with stdenv.lib; {
     description = "Novel computer vision C++ library with customizable algorithms and data structures";
     homepage = http://hci.iwr.uni-heidelberg.de/vigra;
-    license = stdenv.lib.licenses.mit;
-    maintainers = with stdenv.lib.maintainers; [viric];
-    platforms = with stdenv.lib.platforms; linux;
+    license = licenses.mit;
+    maintainers = [ maintainers.viric ];
+    platforms = platforms.linux;
   };
 }
diff --git a/pkgs/development/libraries/wvstreams/default.nix b/pkgs/development/libraries/wvstreams/default.nix
index ecfc9b88a0e4..b879cf37a315 100644
--- a/pkgs/development/libraries/wvstreams/default.nix
+++ b/pkgs/development/libraries/wvstreams/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, qt4, dbus, zlib, openssl, readline, perl }:
+{ stdenv, gcc46, fetchurl, qt4, dbus, zlib, openssl, readline, perl }:
 
 stdenv.mkDerivation {
   name = "wvstreams-4.6.1";
@@ -16,7 +16,7 @@ stdenv.mkDerivation {
     sed -e '1i#include <unistd.h>' -i $(find . -name '*.c' -o -name '*.cc')
   '';
 
-  buildInputs = [ qt4 dbus zlib openssl readline perl ];
+  buildInputs = [ gcc46 qt4 dbus zlib openssl readline perl ];
 
   meta = {
     description = "Network programming library in C++";
diff --git a/pkgs/development/perl-modules/boost-geometry-utils-fix-oom.patch b/pkgs/development/perl-modules/boost-geometry-utils-fix-oom.patch
new file mode 100644
index 000000000000..cbcce3819896
--- /dev/null
+++ b/pkgs/development/perl-modules/boost-geometry-utils-fix-oom.patch
@@ -0,0 +1,34 @@
+From a46f0e41056b48a56c572fe8884d4b5104a8343e Mon Sep 17 00:00:00 2001
+From: Niko Tyni <ntyni@debian.org>
+Date: Sun, 29 Jun 2014 21:51:15 +0300
+Subject: [PATCH] multi_linestring2perl: only extend the array if needed
+
+When the size is 0, we end up extending the stack with
+a negative value. As of Perl 5.19.4, more precisely
+ http://perl5.git.perl.org/perl.git/commit/fc16c3924bd6aa054f21ad5445fecf9b7f39dc36
+this ends up allocating memory for 4G-1 elements.
+
+See Dave Mitchell's comments on perl5-porters:
+ Message-ID: <20140522115758.GX15438@iabyn.com>
+ http://marc.info/?l=perl5-porters&m=140075990913228&w=2
+---
+ src/mline2av.h | 3 ++-
+ 1 file changed, 2 insertions(+), 1 deletion(-)
+
+diff --git a/src/mline2av.h b/src/mline2av.h
+index e4b3fc2..d7bacee 100644
+--- a/src/mline2av.h
++++ b/src/mline2av.h
+@@ -9,7 +9,8 @@ multi_linestring2perl(pTHX_ const multi_linestring& mls)
+ {
+   AV* av = newAV();
+   const unsigned int size = mls.size();
+-  av_extend(av, size-1);
++  if (size > 0)
++    av_extend(av, size-1);
+ 
+   for (int i = 0; i < size; i++) {
+     AV* lineav = newAV();
+-- 
+2.0.0
+
diff --git a/pkgs/development/r-modules/bioc-packages.nix b/pkgs/development/r-modules/bioc-packages.nix
index 015d6d5537ce..60fad74cbfe0 100644
--- a/pkgs/development/r-modules/bioc-packages.nix
+++ b/pkgs/development/r-modules/bioc-packages.nix
@@ -21,12 +21,12 @@ AffyExpress = derive { name="AffyExpress"; version="1.35.0"; sha256="1ysn3c8mpnq
 AffyRNADegradation = derive { name="AffyRNADegradation"; version="1.15.0"; sha256="0x7mwlzvcxplvijprch0anwbfmj1qkrxqd9rc6f4p0zf88z2csal"; depends=[affy]; };
 AffyTiling = derive { name="AffyTiling"; version="1.27.0"; sha256="1jqil9hd10cwsqdlxjd7c8s0p9fvrfcqxiw8rfrq117c8dlgl7w6"; depends=[affxparser affy preprocessCore]; };
 AgiMicroRna = derive { name="AgiMicroRna"; version="2.19.0"; sha256="1m1fi6pdqwnfn21a4i7psxdg12bn6bhvcsi43bhwlzxzkrz00257"; depends=[affy affycoretools Biobase limma preprocessCore]; };
-AllelicImbalance = derive { name="AllelicImbalance"; version="1.7.13"; sha256="195pad565yczbxili0zg6329dxnwaj70vhxz3lizm3pbidlv56jn"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges lattice Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; };
-AnalysisPageServer = derive { name="AnalysisPageServer"; version="1.1.1"; sha256="0qbnwxwc205623fmzvhwrhr2jii2bgrd0mcdwi4811pab0dmzf49"; depends=[Biobase graph log4r rjson]; };
-AnnotationDbi = derive { name="AnnotationDbi"; version="1.31.16"; sha256="0dxgcdvbq8vi97i6r64x5s4gngynk2hqdjmhfnbk648sq8h2rbrf"; depends=[Biobase BiocGenerics DBI IRanges RSQLite S4Vectors]; };
-AnnotationForge = derive { name="AnnotationForge"; version="1.11.3"; sha256="1a3fhinjmrxl400p6w452ar31h40lwd8vlf8snsqqk21vs5mmnla"; depends=[AnnotationDbi Biobase BiocGenerics DBI RSQLite S4Vectors]; };
+AllelicImbalance = derive { name="AllelicImbalance"; version="1.7.17"; sha256="0fgqsdlnch5rh04pnzjypgba2n67j3m2aab2yddl0kf0wsmb8zwg"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges lattice Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; };
+AnalysisPageServer = derive { name="AnalysisPageServer"; version="1.1.2"; sha256="057xik4hxaqz1f9m8clq504xa4km2byag546iw20v6i0qa9s1dwi"; depends=[Biobase graph log4r rjson]; };
+AnnotationDbi = derive { name="AnnotationDbi"; version="1.31.17"; sha256="04xkhqnr9hmgxihfhn35a6s68s8x5layl7mf5whwhwxmlcd76lx4"; depends=[Biobase BiocGenerics DBI IRanges RSQLite S4Vectors]; };
+AnnotationForge = derive { name="AnnotationForge"; version="1.11.7"; sha256="00agvwzmnvs8vx2y62x5qd9y09045j74kk9kp69v8m1iqpigs1v0"; depends=[AnnotationDbi Biobase BiocGenerics DBI RSQLite S4Vectors]; };
 AnnotationFuncs = derive { name="AnnotationFuncs"; version="1.19.0"; sha256="1qjvkbqpyhwibdqv1c4n2z5wjnzx0h3kdas3fs33jhb597bxhl1y"; depends=[AnnotationDbi]; };
-AnnotationHub = derive { name="AnnotationHub"; version="2.1.26"; sha256="0py74da9j3j0h0pvf1kvfzf3cixn52x9l5ac7igans4cm5pizr0k"; depends=[AnnotationDbi BiocGenerics BiocInstaller httr interactiveDisplayBase RSQLite S4Vectors]; };
+AnnotationHub = derive { name="AnnotationHub"; version="2.1.28"; sha256="055biw0izf0la405igpp22azgharwhr6xfks32lr4dgbh8n70qjd"; depends=[AnnotationDbi BiocGenerics BiocInstaller httr interactiveDisplayBase RSQLite S4Vectors]; };
 ArrayExpress = derive { name="ArrayExpress"; version="1.29.1"; sha256="0gyckxsmmh81ykf7mj952h2a4z58xrf9lbnmv884hz7zj317lf83"; depends=[affy Biobase limma XML]; };
 ArrayExpressHTS = derive { name="ArrayExpressHTS"; version="1.19.0"; sha256="0qyd9jhkvw4lxqjvix28yzdx08hi7vf77ynlqxcl2q1lb3gmbxar"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops DESeq edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; };
 ArrayTV = derive { name="ArrayTV"; version="1.7.0"; sha256="11dlq4lmzw0x8z2qrxff6xlcilp95nd71jpdvg3i5yni3ws6z5m1"; depends=[DNAcopy foreach oligoClasses]; };
@@ -41,15 +41,15 @@ BEclear = derive { name="BEclear"; version="1.1.0"; sha256="1icaxkxwr2rkii4fffln
 BGmix = derive { name="BGmix"; version="1.29.0"; sha256="0s2s6ylbw2wvdkn28842ghsflhcmcn156zw3fxmbdnz7xs29qs1f"; depends=[KernSmooth]; };
 BHC = derive { name="BHC"; version="1.21.0"; sha256="0f8qqid4qxw52zjvvm024wcmn0afr7avkr4hr2jfyvs0ga49khx8"; depends=[]; };
 BRAIN = derive { name="BRAIN"; version="1.15.0"; sha256="09yd3xf3h85wdf56p38mnspyqbswl2v8zb81yg0a008p0l5ax8xr"; depends=[Biostrings lattice PolynomF]; };
-BSgenome = derive { name="BSgenome"; version="1.37.1"; sha256="0nmj1wdp1xlkf603sw1h0k3x0jywj3ykaws8sdb4hizb52pgzw8z"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors XVector]; };
+BSgenome = derive { name="BSgenome"; version="1.37.3"; sha256="1a0qk3lh2qhynsink8ysc16d4pmam2midakh26adn1hqrf6n22gb"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors XVector]; };
 BUS = derive { name="BUS"; version="1.25.0"; sha256="1n3s0pw4ijgh927mahwqybks8i6ysybp7xn4a86nrbpr2kqhznrd"; depends=[infotheo minet]; };
-BaseSpaceR = derive { name="BaseSpaceR"; version="1.13.1"; sha256="0w7hdzncjds0dji03ldgk4zyrpr3qal2lzdlhlbc8809fjlp3jb9"; depends=[RCurl RJSONIO]; };
+BaseSpaceR = derive { name="BaseSpaceR"; version="1.13.2"; sha256="17g87vfx6yy4cdqxchl9ig6s2vhnpfbarssw80ha6kbqw81jh55h"; depends=[RCurl RJSONIO]; };
 Basic4Cseq = derive { name="Basic4Cseq"; version="1.5.1"; sha256="0a4b11rv5ilv84qqpvf320c3knaajg4hlby5km0zzms3vbisr4hi"; depends=[Biostrings caTools GenomicAlignments GenomicRanges RCircos]; };
 BayesPeak = derive { name="BayesPeak"; version="1.21.0"; sha256="0mz00mk6gmc5g79iifn5hzfwf7s568n6s6wy46vrnnnnr3sk9w49"; depends=[IRanges]; };
-BeadDataPackR = derive { name="BeadDataPackR"; version="1.21.0"; sha256="1h9zq2zjwslgwzz5zghjkszhy9d6bcrpssk6x15a9i0wb6nkrdxm"; depends=[]; };
+BeadDataPackR = derive { name="BeadDataPackR"; version="1.21.1"; sha256="16dh7byvigd6161qznd1k9cz9hp0r50nbrd8nqlsh28zr60pvrj3"; depends=[]; };
 BiGGR = derive { name="BiGGR"; version="1.5.0"; sha256="1q9m870pyhxd1627n94c259094k8jyrg22ni26qpnxkapj18lr0b"; depends=[hyperdraw hypergraph LIM rsbml stringr]; };
-BiRewire = derive { name="BiRewire"; version="2.1.0"; sha256="1rf3j0rfbzyd17ashj99fjahilz4pgil7ch6iyfzipb6894faxwi"; depends=[igraph slam]; };
-BiSeq = derive { name="BiSeq"; version="1.9.1"; sha256="0s8mhynjprg4bpn9p88rzpm6na9581bzmyv4wljsdqlz0wcb87az"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; };
+BiRewire = derive { name="BiRewire"; version="2.1.2"; sha256="08innw83yr3imrgklva9djjx3a5sd7mqfnb70ggi6hia729kar01"; depends=[igraph slam]; };
+BiSeq = derive { name="BiSeq"; version="1.9.2"; sha256="1z401p2y9sa2cs1zwnkvf3968nyv5c7wcbxvldjyl5dg04qw88wn"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; };
 BicARE = derive { name="BicARE"; version="1.27.0"; sha256="19hslc78nijcs6gyxzzcd8856wa1gf5dsrvm4x6r9lprfrk7d7fb"; depends=[Biobase GSEABase multtest]; };
 BioMVCClass = derive { name="BioMVCClass"; version="1.37.0"; sha256="1k4ba98cjaqhy33vsmflnwasi0vxr30dvj6861pz625m87fyp2g6"; depends=[Biobase graph MVCClass Rgraphviz]; };
 BioNet = derive { name="BioNet"; version="1.29.0"; sha256="0q86sfv29y8haq8zhxc93p7zl1nh8aq0yj31hvw8xx6g75xlapaz"; depends=[AnnotationDbi Biobase graph igraph RBGL]; };
@@ -57,9 +57,9 @@ BioSeqClass = derive { name="BioSeqClass"; version="1.27.0"; sha256="1pv7zibcrgb
 Biobase = derive { name="Biobase"; version="2.29.1"; sha256="12cckssh7x4dd8vaapp5nfc5bfcqls8k3rblcfi17z5cpi0jply6"; depends=[BiocGenerics]; };
 BiocCaseStudies = derive { name="BiocCaseStudies"; version="1.31.0"; sha256="05nj9i9y8clf406bjcflj8lsrp9x9iw6my1bdqnxg3nv2krp37xn"; depends=[Biobase]; };
 BiocCheck = derive { name="BiocCheck"; version="1.5.6"; sha256="0gpmrqvj31n73bqljf23wbsw3hp44hl3z1jhc2q86s3mw6hlcfip"; depends=[BiocInstaller biocViews codetools devtools graph httr knitr optparse]; };
-BiocGenerics = derive { name="BiocGenerics"; version="0.15.2"; sha256="16r4jq5yq3xg8s212dngrf6a63ggb87654cf45f4386c56gcczgg"; depends=[]; };
-BiocInstaller = derive { name="BiocInstaller"; version="1.19.6"; sha256="09f3ybmaklac71ixd4imfig7861qc339kpqhjybq97a3yw8zcksa"; depends=[]; };
-BiocParallel = derive { name="BiocParallel"; version="1.3.26"; sha256="1dy3i5ypjxnz57yw2pyfm7778fdficbp6abbsrq79rgr1dvfbqyr"; depends=[futile_logger snow]; };
+BiocGenerics = derive { name="BiocGenerics"; version="0.15.3"; sha256="1wk7mr3jmjr2ljqqlmnpvb3x2cflkkhsyjl2cd4ns0gld4rmmm8x"; depends=[]; };
+BiocInstaller = derive { name="BiocInstaller"; version="1.19.8"; sha256="1jmzvs3sv324n9j6j8mrjpc648650k0sv23xni09x55zq41nm672"; depends=[]; };
+BiocParallel = derive { name="BiocParallel"; version="1.3.31"; sha256="0s47gbrj8cs8wpsac14nj2blqwwr2fkg8fsr61fz5v0j21wrk3kd"; depends=[futile_logger snow]; };
 BiocStyle = derive { name="BiocStyle"; version="1.7.4"; sha256="0wlydy1a3pspnyjg5vl0657z620n5vlhx99hxisskbrsr026mhmg"; depends=[]; };
 Biostrings = derive { name="Biostrings"; version="2.37.2"; sha256="0j6701qgrnphsy9p34sf3s6d91j1zbd824zwv9rsfdmdffbkqq3b"; depends=[BiocGenerics IRanges S4Vectors XVector zlibbioc]; };
 BitSeq = derive { name="BitSeq"; version="1.13.0"; sha256="1d397bcdyi3d35l1q1661spm3xhr7hqlsrjr5a2ybsjs3wqkf4fj"; depends=[IRanges Rsamtools S4Vectors zlibbioc]; };
@@ -83,12 +83,13 @@ CGHnormaliter = derive { name="CGHnormaliter"; version="1.23.0"; sha256="1rd7lbz
 CGHregions = derive { name="CGHregions"; version="1.27.0"; sha256="0ah7cxaq1qvgwxvgp8jzkwyzdqa4yji7ylhdq2whysvc73aciikg"; depends=[Biobase CGHbase]; };
 CMA = derive { name="CMA"; version="1.27.0"; sha256="10bbmlyd8370dr1azrsljlslail5i9pwy8m524laqq85196lf6lv"; depends=[Biobase]; };
 CNAnorm = derive { name="CNAnorm"; version="1.15.0"; sha256="13wraamvj1vr5iiwknz5g1jq8zmq3gqzcsphn156rmxivpkxmk8l"; depends=[DNAcopy]; };
-CNEr = derive { name="CNEr"; version="1.5.3"; sha256="101cf9hpz3ak04xf9i9b6wbmmdjfgawfvxsb4zflv6avjdqnsqbm"; depends=[Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges IRanges RSQLite rtracklayer S4Vectors XVector]; };
+CNEr = derive { name="CNEr"; version="1.5.4"; sha256="10qvxgrp6g8yq7gn089v4aq3xyhvi21mml30aszwv718lq5xhcrz"; depends=[Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges IRanges RSQLite rtracklayer S4Vectors XVector]; };
 CNORdt = derive { name="CNORdt"; version="1.11.0"; sha256="1c01ra85j04wdwaqzvc3qvva9sf878qcy4xaz8kxd6b49ringcia"; depends=[abind CellNOptR]; };
 CNORfeeder = derive { name="CNORfeeder"; version="1.9.0"; sha256="1d2lskj5vlg0ry3gkm61i1cahf6m9vg2599qj6v8z7w9wmp37cb7"; depends=[CellNOptR graph]; };
 CNORfuzzy = derive { name="CNORfuzzy"; version="1.11.0"; sha256="0kzlad2mkfvqxv4lv8hcc10cspcg31yp49r6pdn2vakif5gbpnz3"; depends=[CellNOptR nloptr]; };
 CNORode = derive { name="CNORode"; version="1.11.0"; sha256="0cmv9s23pcd48fpzg92i5h2g10z49n091f2lnarldsay3sj8wlcy"; depends=[CellNOptR genalg]; };
 CNTools = derive { name="CNTools"; version="1.25.0"; sha256="05k939z92mmqajirl4w872qnh59093dpxk6da5bcmrr43h65dn95"; depends=[genefilter]; };
+CNVPanelizer = derive { name="CNVPanelizer"; version="0.99.6"; sha256="1p5kffb7j8k38gj0h6qs6fhn9yj0i0ap2lbf7zmgi3h5jkx1pwks"; depends=[BiocParallel cn_mops exomeCopy foreach GenomicRanges ggplot2 IRanges matrixStats plyr Rsamtools xlsx]; };
 CNVrd2 = derive { name="CNVrd2"; version="1.7.0"; sha256="18970q33dw51b7jas26dl2cr2ghwjxrllgmqykq0f50b55sv01p7"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; };
 CNVtools = derive { name="CNVtools"; version="1.63.0"; sha256="005xw4rbp4zdg78jhrq5l4201kq5889py0jh49kfjpk000nvvmj9"; depends=[survival]; };
 CODEX = derive { name="CODEX"; version="1.1.0"; sha256="0k3ncnngblbx8hhv5p31dac4s9asjc8hddn4b0z20zkqncpgs16s"; depends=[GenomeInfoDb Rsamtools]; };
@@ -96,7 +97,7 @@ COHCAP = derive { name="COHCAP"; version="1.7.0"; sha256="0clr1jh4jnq54phsnl90zf
 COMPASS = derive { name="COMPASS"; version="1.7.2"; sha256="0c83fsrmi7d2888pa3lnln42mlbnjgvpxw337vdh3dar1185a5b0"; depends=[abind clue data_table knitr plyr RColorBrewer Rcpp scales]; };
 CORREP = derive { name="CORREP"; version="1.35.0"; sha256="0hlij2ch8r3lv130hvyshb82lfqz2c7kr56bka1ghmg6jp0xf1n6"; depends=[e1071]; };
 COSNet = derive { name="COSNet"; version="1.3.3"; sha256="0l9sn0cki0mxacxv0bwp3cczcl8rscx8g3lnr0r448f13j8198f4"; depends=[]; };
-CRISPRseek = derive { name="CRISPRseek"; version="1.9.1"; sha256="1wrjvnr8i50b9r4h8m84whs5nhqxi1w91c622kid7adwmhzq3ri2"; depends=[BiocGenerics Biostrings BSgenome seqinr]; };
+CRISPRseek = derive { name="CRISPRseek"; version="1.9.2"; sha256="1h004gznxrm2k3l4xdr6iyn97rkkh8n85phskiink815ysm2l9z4"; depends=[BiocGenerics Biostrings BSgenome seqinr]; };
 CRImage = derive { name="CRImage"; version="1.17.0"; sha256="1sab95gngwi7c333n9hnbd9fdvdy9i69pjpx5ic5799s7qr03llw"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; };
 CSAR = derive { name="CSAR"; version="1.21.0"; sha256="1wn7zxmy5ssj2jkk2624j42yv67wdcigp5ksb6fc2kzpgnvqmxl1"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
 CSSP = derive { name="CSSP"; version="1.7.0"; sha256="1ydxj358sfaygzjvh0b042p7gymjyl7nr5cnxrh8c7x2mv2hdh4d"; depends=[]; };
@@ -107,29 +108,29 @@ CausalR = derive { name="CausalR"; version="0.99.12"; sha256="038raljgrdwsp8dzc5
 CellNOptR = derive { name="CellNOptR"; version="1.15.0"; sha256="14x68i7wss44hmfihyqkw340lc0dpsccqsn1l2a0zs0gfkwgw3a5"; depends=[ggplot2 graph hash RBGL RCurl Rgraphviz XML]; };
 CexoR = derive { name="CexoR"; version="1.7.2"; sha256="1rhz97c8avmx9g3zf4vdzqb56v98dlh9xw74nywqvznn7wbq8rvp"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; };
 ChAMP = derive { name="ChAMP"; version="1.7.0"; sha256="0ll50qyq9k8x4bv30dap6g6lpavh7diwxllm501jgg39kp956d08"; depends=[DNAcopy GenomicRanges impute IRanges limma marray minfi plyr preprocessCore RPMM sva wateRmelon]; };
-ChIPQC = derive { name="ChIPQC"; version="1.5.1"; sha256="0nvpq2m267nf3aiv7xvw1fkwnr53qqzhs2nmyhjiqdw9ckias134"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors]; };
+ChIPQC = derive { name="ChIPQC"; version="1.5.2"; sha256="0g630lpzwfbg5hgicg0s906a3a6gidswmidszx0hmn3479fah74m"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors]; };
 ChIPXpress = derive { name="ChIPXpress"; version="1.11.0"; sha256="11aifr69ss1hakrhba985bwz6k1sqkpzvv7gnzn8cgqnzxyr2i6b"; depends=[affy biganalytics bigmemory Biobase frma GEOquery]; };
 ChIPpeakAnno = derive { name="ChIPpeakAnno"; version="3.3.2"; sha256="0ww3ddnvdc561lhz27h8n3ywi1xpx1cbsqk2i8m5rkpykkkkr2dh"; depends=[AnnotationDbi BiocGenerics BiocInstaller biomaRt Biostrings BSgenome GenomicFeatures GenomicRanges graph IRanges limma multtest RBGL VennDiagram]; };
-ChIPseeker = derive { name="ChIPseeker"; version="1.5.4"; sha256="10h2gbc1irzlkv9b12k9z54csaav6qpvjvjbgqzh7dcm03l14fah"; depends=[AnnotationDbi BiocGenerics boot dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gtools IRanges magrittr plotrix plyr RColorBrewer rtracklayer S4Vectors]; };
-ChIPseqR = derive { name="ChIPseqR"; version="1.23.1"; sha256="0di3vh865m84cvl9mkwiqmz8jz5y54q4ayc0fbzjkwh790qxb48j"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; };
+ChIPseeker = derive { name="ChIPseeker"; version="1.5.6"; sha256="0ppv51hd44h15mkw15samdq1awsh1kdfy5p87pj60nmvbl0qj39h"; depends=[AnnotationDbi BiocGenerics boot dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gtools IRanges magrittr plotrix plyr RColorBrewer rtracklayer S4Vectors]; };
+ChIPseqR = derive { name="ChIPseqR"; version="1.23.2"; sha256="1k1vbck7kjyzzgm0hg8hxpq6zfg71rca76q3998fcnnlzsmgvcf4"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; };
 ChIPsim = derive { name="ChIPsim"; version="1.23.1"; sha256="13kniwvwa49n1kc9114ljn1fmzaiyb2nh33if596llql60p7nd23"; depends=[Biostrings IRanges ShortRead XVector]; };
 ChemmineOB = derive { name="ChemmineOB"; version="1.7.1"; sha256="04agfsdzccsvvvis6vy1gg83gfs4nrph950v6bbzgk15ki32rsjz"; depends=[BH BiocGenerics Rcpp zlibbioc]; };
 ChemmineR = derive { name="ChemmineR"; version="2.21.7"; sha256="01riyjdjxnw1fybps1g5sbbcv1yn3mn222wg3w825m7lcb1hg13z"; depends=[BH BiocGenerics DBI digest ggplot2 Rcpp RCurl rjson]; };
 ChromHeatMap = derive { name="ChromHeatMap"; version="1.23.0"; sha256="1z0w201lbhsapx4p0gn9x65zxjbzh8g51jjfcvy61xrqbbyshwv1"; depends=[annotate AnnotationDbi Biobase BiocGenerics IRanges rtracklayer]; };
-ClassifyR = derive { name="ClassifyR"; version="1.3.0"; sha256="0jn7pd3mh6m6cqg5dldn8vmi3ffjhv1hn3gvvy6bl1g80a0xf5mb"; depends=[Biobase BiocParallel locfit ROCR]; };
+ClassifyR = derive { name="ClassifyR"; version="1.3.4"; sha256="1bq4czpmz5s3xpgfhv355xjgwslswj5kpza5nz3ribdqs762943w"; depends=[Biobase BiocParallel locfit ROCR]; };
 Clomial = derive { name="Clomial"; version="1.5.0"; sha256="1kxc0bgfrfj0bbx696513mn8n6vficdsd3ag5pqs5xz2bb7vx4qn"; depends=[matrixStats permute]; };
 Clonality = derive { name="Clonality"; version="1.17.0"; sha256="1irb13wi5lq28nni0b89fy06vvjwpzigfdwfmzjscrmhzdysrfa6"; depends=[DNAcopy]; };
 CoCiteStats = derive { name="CoCiteStats"; version="1.41.0"; sha256="0shp06qy8cvwq0723xc7qxrxv9qhkids3gq3aqqhlvn1s66nw7nq"; depends=[AnnotationDbi]; };
-CoGAPS = derive { name="CoGAPS"; version="2.3.1"; sha256="037abxyw5xkj537di2q3q75isb2qr2h2czr5a6q30g8qzh1xj3ik"; depends=[BH gplots RColorBrewer Rcpp]; };
+CoGAPS = derive { name="CoGAPS"; version="2.3.2"; sha256="0jh5ij66x3isz67mj0jwypyshplk1l1p47n2hvwgq87xmjzv6c8p"; depends=[BH gplots RColorBrewer Rcpp]; };
 CoRegNet = derive { name="CoRegNet"; version="1.5.0"; sha256="14yq1f005fcfmfp88h2fy05gdgbskjws11qbdh0ndx3sf93nzxm2"; depends=[arules igraph shiny]; };
 CompGO = derive { name="CompGO"; version="1.5.0"; sha256="128ib7w0jxba0p32s796i864b73zjfxac56znd0v4wv4vxv3jiv6"; depends=[GenomicFeatures ggplot2 pathview pcaMethods RDAVIDWebService reshape2 Rgraphviz rtracklayer]; };
-ComplexHeatmap = derive { name="ComplexHeatmap"; version="1.1.9"; sha256="127w7bhjmzzav3y6vz3dhr5da37vzl86xriy32rhiyppbxx34s78"; depends=[circlize colorspace GetoptLong RColorBrewer]; };
+ComplexHeatmap = derive { name="ComplexHeatmap"; version="1.2.2"; sha256="0v1mj0n5gjdarwdrl9ir9gms0f3v0gplx4n34zvyszxivh4ph4jj"; depends=[circlize colorspace dendextend GetoptLong RColorBrewer]; };
 ConsensusClusterPlus = derive { name="ConsensusClusterPlus"; version="1.23.0"; sha256="13iikfh234d2z4k487lb3shmnrfijygrf6gz3x481gba2psnbjyw"; depends=[Biobase cluster]; };
 CopyNumber450k = derive { name="CopyNumber450k"; version="1.5.0"; sha256="0mjhmh4shgckv43zvg4yqr17jfi9p9xnc40fwy9fw9c4vjcfsvsj"; depends=[Biobase BiocGenerics DNAcopy minfi preprocessCore]; };
 CopywriteR = derive { name="CopywriteR"; version="2.1.2"; sha256="0lja77qdfbsl9cc1nv4jbrjwiq8bb93ja6na8hqksrrm9g1qs4q4"; depends=[BiocParallel chipseq data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; };
 CorMut = derive { name="CorMut"; version="1.11.0"; sha256="0s92bh3610frxbm0gqvlznay70dy7x61hvc0qgh6xmcyz0llx27g"; depends=[igraph seqinr]; };
 Cormotif = derive { name="Cormotif"; version="1.15.0"; sha256="1v36ylwkxr6yqasckmmj2dkr7s72f39srhwvm93rs1rl7kw4dc4p"; depends=[affy limma]; };
-CoverageView = derive { name="CoverageView"; version="1.5.0"; sha256="0ix1xy0in3nzd1lm9imy1wrm347dib5nfa6105zkc993bnh11wls"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; };
+CoverageView = derive { name="CoverageView"; version="1.5.1"; sha256="0qi8r6vw5c6kmlw12j81jmgn555wd51w80m80gm5n7hqnggpwkh4"; depends=[BiocGenerics GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; };
 DART = derive { name="DART"; version="1.17.1"; sha256="1z7lf4d9yjcyikq9j3348z5sxjqaly46c0ls7f9cl8nnqdpw7w42"; depends=[igraph]; };
 DASiR = derive { name="DASiR"; version="1.9.0"; sha256="0b3b7kmhsd6bb1s57c89h495j1ax6779wfca112fq6ba3z4dih3n"; depends=[Biostrings GenomicRanges IRanges XML]; };
 DAVIDQuery = derive { name="DAVIDQuery"; version="1.29.0"; sha256="0gvm6qjx8y61nbnbz66md74pfc4awj4900pjr8q1m5sip5yzbxj2"; depends=[RCurl]; };
@@ -137,51 +138,51 @@ DBChIP = derive { name="DBChIP"; version="1.13.0"; sha256="0gk9kgmyp9540sq5gpbn7
 DECIPHER = derive { name="DECIPHER"; version="1.15.0"; sha256="1kbdsqvkznzsk4ljy91r5ipndwxb8hhkm46qqkakgr24mia3yvl1"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; };
 DEDS = derive { name="DEDS"; version="1.43.0"; sha256="1z049ppkrbyp0xjpiygz5i6rbxbv3vvnvspwz2vv77495v7ykj6z"; depends=[]; };
 DEGraph = derive { name="DEGraph"; version="1.21.0"; sha256="17f04qngcx8y4glr5wiryi8fifbla8fxh8nb6wagnrai5x6vhzis"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; };
-DEGreport = derive { name="DEGreport"; version="1.3.0"; sha256="0qz7zmg9r76pwmn4hfpwagaij080pwmj7373h9fiiqk51416pqkq"; depends=[coda edgeR ggplot2 Nozzle_R1 plyr quantreg rjags]; };
+DEGreport = derive { name="DEGreport"; version="1.4.0"; sha256="06l803iy18kkv05b4h46vmzws20c0735m6csfkn2vp3bik8xh4lp"; depends=[coda edgeR ggplot2 Nozzle_R1 plyr quantreg]; };
 DEGseq = derive { name="DEGseq"; version="1.23.0"; sha256="0993f140wwv9z9l53f9g74x7l28bflxq7wdcbilfz7ijhh7isr7p"; depends=[qvalue samr]; };
 DESeq = derive { name="DESeq"; version="1.21.0"; sha256="13f6phdf9g325dlpn38l7zrq3mzldhldil134acxi9p3l50bx23y"; depends=[Biobase BiocGenerics genefilter geneplotter lattice locfit MASS RColorBrewer]; };
-DESeq2 = derive { name="DESeq2"; version="1.9.10"; sha256="1mvxhw7nzcv2p5kr90yyv29dl8vqcvz9y4z0vgpbl6s4qh741br4"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 Hmisc IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; };
-DEXSeq = derive { name="DEXSeq"; version="1.15.6"; sha256="19hjrdfl28jma8jb00b0dywqpj07bas623avqaw0c2xns2zrb224"; depends=[Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools statmod stringr]; };
+DESeq2 = derive { name="DESeq2"; version="1.9.21"; sha256="0ywhakri35cz37zlwv760zgmk1z9ldivl0i24mawavccc0hcvrhk"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 Hmisc IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; };
+DEXSeq = derive { name="DEXSeq"; version="1.15.9"; sha256="0ml4ibzhw38w0mfp0vdbbkisz40rw65yyd71q3ppj7jg4r4ch39a"; depends=[Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools statmod stringr]; };
 DFP = derive { name="DFP"; version="1.27.0"; sha256="0xcipbhfzvrpbm6dh2y3lbvfbwpn4wly32sssfm702zik5wm9dy1"; depends=[Biobase]; };
 DMRcaller = derive { name="DMRcaller"; version="1.1.1"; sha256="1g7q7cwivvb0m2y4fixvbxp51zfag1jv66bdlai3gawr94pcx56y"; depends=[GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; };
 DMRcate = derive { name="DMRcate"; version="1.5.0"; sha256="12q6if9lljia37zwhcc9fpcp9vhkp1qhzchpypwwyn2j4344bmp3"; depends=[limma minfi]; };
 DMRforPairs = derive { name="DMRforPairs"; version="1.5.0"; sha256="0d14qgx07xq7wa687a2znpfw0zcg8ccvxjawkjdbi6ayjwpb6zd7"; depends=[GenomicRanges Gviz R2HTML]; };
 DNAcopy = derive { name="DNAcopy"; version="1.43.0"; sha256="1v1i4bfkblimdmazv29csqr46jaiv8lncihgywvq5wfn8ccr7xl9"; depends=[]; };
 DOQTL = derive { name="DOQTL"; version="1.3.0"; sha256="0g3nyamqdhjg8105kcq6nsgjgqzcxkp04194j82v1xb31baj53bg"; depends=[annotate annotationTools Biobase BiocGenerics biomaRt corpcor GenomicRanges hwriter IRanges mclust QTLRel Rsamtools RUnit S4Vectors XML]; };
-DOSE = derive { name="DOSE"; version="2.7.7"; sha256="0bdn26akwvhw3aksxw68mjn1s462vv9y12v6wlykpp2sla1naywv"; depends=[AnnotationDbi ggplot2 GOSemSim igraph plyr qvalue reshape2 scales]; };
-DSS = derive { name="DSS"; version="2.7.1"; sha256="1vf9j3clb7ac1zm8wx8vi0kmsv6p6533qxv4932gjcs5nn482516"; depends=[Biobase bsseq]; };
+DOSE = derive { name="DOSE"; version="2.7.9"; sha256="0l0rkd7siz251pxgmfv4ijq1l68w3lkjlc83zmhf4ddjf3db07ig"; depends=[AnnotationDbi ggplot2 GOSemSim igraph plyr qvalue reshape2 scales]; };
+DSS = derive { name="DSS"; version="2.7.2"; sha256="01czzgkx6rqpps93vfn8dg2n2hm2nkd887mc955z67845jkrgi2j"; depends=[Biobase bsseq]; };
 DTA = derive { name="DTA"; version="2.15.0"; sha256="0amibwj5mnm2plkf3ys8sgy4lpwr60fnvika0psdrahgb4blmkzp"; depends=[LSD scatterplot3d]; };
 DeconRNASeq = derive { name="DeconRNASeq"; version="1.11.0"; sha256="0665chwpbs2pw753nb2x65cs9r9ghb5123bsrzrv6pz2p3ni8yz7"; depends=[ggplot2 limSolve pcaMethods]; };
 DiffBind = derive { name="DiffBind"; version="1.15.3"; sha256="1akx65vi8razwpfxnvilh4x1vb8qbsfr2q8lygsb3imfrrb83q44"; depends=[amap edgeR GenomicAlignments GenomicRanges gplots IRanges lattice limma locfit RColorBrewer Rsamtools SummarizedExperiment systemPipeR zlibbioc]; };
-DirichletMultinomial = derive { name="DirichletMultinomial"; version="1.11.1"; sha256="1ds5gghxs4nb171cvahnb70s86hpqib6alijjfgdzcax09miw72v"; depends=[IRanges S4Vectors]; };
+DirichletMultinomial = derive { name="DirichletMultinomial"; version="1.11.2"; sha256="01wmvs7alq7gy1nmb5gdbglfs51qdhwysbmmjvh7yyhb8dqbvrj4"; depends=[IRanges S4Vectors]; };
 DriverNet = derive { name="DriverNet"; version="1.9.0"; sha256="0visiafw9m7i0yy70fvnmdkhg9z946sg5hdl5vnvj8c6g3mfacxy"; depends=[]; };
 DrugVsDisease = derive { name="DrugVsDisease"; version="2.9.0"; sha256="1wmw1r0x7kkmp47743aq0pp71wamnf5gsk6bhz6rdvswzb12iyqk"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt GEOquery limma qvalue RUnit xtable]; };
 DupChecker = derive { name="DupChecker"; version="1.7.0"; sha256="02wwwnx3w8rxiassd62xr295paw8py9pqsk1396qb5k773l6bfxv"; depends=[R_utils RCurl]; };
 DynDoc = derive { name="DynDoc"; version="1.47.0"; sha256="0gpmhqav4dx8p86pkh18fpmlki60zqaz00m2zhziiawigbrz41ph"; depends=[]; };
-EBImage = derive { name="EBImage"; version="4.11.2"; sha256="1mnpwf844lgz4agk9w67pyppz6kq6fqbmarpv6pkwc9p3jb05nsy"; depends=[abind BiocGenerics fftwtools jpeg locfit png tiff]; };
-EBSeq = derive { name="EBSeq"; version="1.9.1"; sha256="0c65iiw9qxk6pqmnnjxdncpfvddgbvdfghshb4qpida4zp1yc7sg"; depends=[blockmodeling gplots]; };
+EBImage = derive { name="EBImage"; version="4.11.5"; sha256="15npg7r76avlxq036yis85b91bgl10y4wjjcdnrcn39dbvb50zav"; depends=[abind BiocGenerics fftwtools jpeg locfit png tiff]; };
+EBSeq = derive { name="EBSeq"; version="1.9.2"; sha256="0n3y9ikamcfm786fvqp5b2b4g2fx8hvnicsx1sh4rvrpyab9f5jm"; depends=[blockmodeling gplots]; };
 EBSeqHMM = derive { name="EBSeqHMM"; version="1.3.1"; sha256="0lyf363f1wfgacrj5cyq8n3f3ssl5q400mn2q94cpai6k0qmvgs1"; depends=[EBSeq]; };
 EBarrays = derive { name="EBarrays"; version="2.33.0"; sha256="1zvfqf49chiks5vmj5ki89pvy14bm1cman47n3ybba1gg8z8mw94"; depends=[Biobase cluster lattice]; };
 EBcoexpress = derive { name="EBcoexpress"; version="1.13.0"; sha256="0fl0a7xasqcwvjlgf3h51akyhwpras2865m2idz1nmacm42q1w79"; depends=[EBarrays mclust minqa]; };
-EDASeq = derive { name="EDASeq"; version="2.3.0"; sha256="1myqbcgyah325yh04cb70bgrqpwgikdkda77m4g5g5zn570s6bd3"; depends=[aroma_light Biobase BiocGenerics DESeq IRanges Rsamtools ShortRead]; };
+EDASeq = derive { name="EDASeq"; version="2.3.2"; sha256="0l1mmpy71pqqmqnx4xxn1v0kvsk0cfik98qszczh1ag8wyi1ky3m"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics biomaRt Biostrings DESeq GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; };
 EDDA = derive { name="EDDA"; version="1.7.0"; sha256="0dyyhnc9v232njqnrcaq78g2m1qws30qcf6bsswq2di235ymk2g0"; depends=[baySeq DESeq edgeR Rcpp ROCR snow]; };
 ELBOW = derive { name="ELBOW"; version="1.5.0"; sha256="0lnc5hw2x4p9yd561w9dwplf7q2slcaghxsh5796bmyxjxhxanpy"; depends=[]; };
-ELMER = derive { name="ELMER"; version="0.99.8"; sha256="1xvl12f8wmwc8crdl810vkszgxik649w0km581jvpy1azr6z2vjk"; depends=[GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges minfi reshape S4Vectors]; };
+ELMER = derive { name="ELMER"; version="1.00.0"; sha256="1kb7rixq02cc0cwm52acji69p89jq07zsagg7a8qva6gshs94k86"; depends=[GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges minfi reshape S4Vectors]; };
 EMDomics = derive { name="EMDomics"; version="1.1.0"; sha256="1i2dy2vqig0lkd13xy4yfwq58zyjiqavpmcvg6pvkh2l48ap1jds"; depends=[BiocParallel emdist ggplot2 matrixStats]; };
 ENCODExplorer = derive { name="ENCODExplorer"; version="1.1.3"; sha256="054cm1ldas26gv4xn16w3i25kykwnikj4s83g7sxxdij93m5rmlb"; depends=[jsonlite RSQLite]; };
 ENVISIONQuery = derive { name="ENVISIONQuery"; version="1.17.0"; sha256="1dnlw62hwysij63yc856c2sncgfwdq0rpmcds6i6wigdcfd21w8q"; depends=[rJava XML]; };
-ENmix = derive { name="ENmix"; version="1.1.4"; sha256="1pcbklxcfnfqwlfwax9n8aql2gaak596gph4xqq5xf64mj5f4qqv"; depends=[Biobase doParallel foreach geneplotter MASS minfi preprocessCore sva wateRmelon]; };
+ENmix = derive { name="ENmix"; version="1.1.6"; sha256="069dniqyg0pljbwnl24bv5kfdh5v2j9vbvyxc127ag1isggh9m7b"; depends=[Biobase doParallel foreach geneplotter impute MASS minfi preprocessCore sva wateRmelon]; };
 EasyqpcR = derive { name="EasyqpcR"; version="1.11.1"; sha256="0s2jyg6b14wbyl0c1n89c7bi7p88g7s1rz8d830p9hh2x75ly6zj"; depends=[gWidgetsRGtk2 matrixStats plotrix plyr]; };
 EnrichmentBrowser = derive { name="EnrichmentBrowser"; version="1.3.0"; sha256="1a6w3drh5x20wvxpx1cb5q2h9k6jh65v9hh81924lcp4baplpx31"; depends=[Biobase graph KEGGgraph KEGGREST limma MASS mixtools neaGUI qvalue RColorBrewer Rgraphviz safe SPIA stringr]; };
 ExiMiR = derive { name="ExiMiR"; version="2.11.0"; sha256="1gmfrn3jq4pz5wmijywhxr0kx79534fhrfnqyhjmqq3s9sjn2cbh"; depends=[affy affyio Biobase limma preprocessCore]; };
 ExpressionView = derive { name="ExpressionView"; version="1.21.0"; sha256="026w9f119j26c1078nwg4rhfc54wlb3i56iy8bi0cjpvbm4p698f"; depends=[AnnotationDbi bitops caTools eisa isa2]; };
 FEM = derive { name="FEM"; version="2.3.0"; sha256="112mmah33ar36cpqjwanrfyhdwjfympnvmxwirxbbnk0nfp9cvpr"; depends=[AnnotationDbi corrplot igraph impute limma marray Matrix]; };
-FGNet = derive { name="FGNet"; version="3.3.2"; sha256="000s0f6wki96w5di3gxhn70iwyrnwj5359s3a5ns2a0z0qnr05ww"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; };
+FGNet = derive { name="FGNet"; version="3.3.3"; sha256="026spxqdwwz4654fv4k6lhafckfkiqcryr3az0kcfnn6fzaji2g9"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; };
 FISHalyseR = derive { name="FISHalyseR"; version="1.3.0"; sha256="0xnmww7ldyxghq7mfjc3zhx1qahskmny3088ar0mj9v4iz4a987q"; depends=[abind EBImage]; };
 FRGEpistasis = derive { name="FRGEpistasis"; version="1.5.0"; sha256="1vvcphgirvghzjvic5yq6nl229ryc0y4kp5qd25kgspbcgblg01q"; depends=[fda MASS]; };
 FlowRepositoryR = derive { name="FlowRepositoryR"; version="1.1.1"; sha256="1xxljbdbvxg1dbm82r86frw2bskmfrl6rv98xz0z4jfc0w4ag3pd"; depends=[RCurl XML]; };
 FlowSOM = derive { name="FlowSOM"; version="1.1.0"; sha256="0k5pw46dbhm6nssr5szj251v3479xgky2iipihrdvp5lr5lhxilq"; depends=[BiocGenerics ConsensusClusterPlus flowCore igraph tsne]; };
-FourCSeq = derive { name="FourCSeq"; version="1.3.3"; sha256="1zny041wfg4c9cfdx0kr3a5nsl48zn6fccb8dixp4q61nm621zra"; depends=[Biobase Biostrings DESeq2 fda GenomicAlignments GenomicRanges ggbio ggplot2 gtools LSD Matrix reshape2 Rsamtools rtracklayer SummarizedExperiment]; };
+FourCSeq = derive { name="FourCSeq"; version="1.3.4"; sha256="1csxfr23b3g1k54h4ksnhg7c7d6aw28v32lrrqyq7x7xls9cx2lg"; depends=[Biobase Biostrings DESeq2 fda GenomicAlignments GenomicRanges ggbio ggplot2 gtools LSD Matrix reshape2 Rsamtools rtracklayer SummarizedExperiment]; };
 FunciSNP = derive { name="FunciSNP"; version="1.11.0"; sha256="19kl14yzqr59ngrd5ygr858zbvx23rihlr4vw5bfdy9cgwlvlzab"; depends=[AnnotationDbi ChIPpeakAnno GenomicRanges ggplot2 IRanges plyr reshape Rsamtools rtracklayer scales snpStats VariantAnnotation]; };
 GENE_E = derive { name="GENE.E"; version="1.9.0"; sha256="10c9mw9f619z2ai43qvagj7p1lsqpv90z8vzsyyxym614lvlqfzm"; depends=[RCurl rhdf5]; };
 GENESIS = derive { name="GENESIS"; version="1.1.0"; sha256="01d3yc5rc4y22znr7zf980m458qvnmjxpml353k7bkwyz6xyn0fj"; depends=[GWASTools]; };
@@ -189,25 +190,25 @@ GEOmetadb = derive { name="GEOmetadb"; version="1.29.0"; sha256="1s9x3dbh61xisk5
 GEOquery = derive { name="GEOquery"; version="2.35.4"; sha256="1ny592c1s36a1hkgaqqyss65c190bw5612l23qc9y9qhf4sarq38"; depends=[Biobase RCurl XML]; };
 GEOsubmission = derive { name="GEOsubmission"; version="1.21.0"; sha256="1rr8k4myw7jibibclphj63hp4byk3v0cg37vnyc5b0iacdp8s9gn"; depends=[affy Biobase]; };
 GEWIST = derive { name="GEWIST"; version="1.13.0"; sha256="1mlzyjggv0rh9xk9pifshhdri3vapvzk2h47g75wx57yfapamcwn"; depends=[car]; };
-GGBase = derive { name="GGBase"; version="3.31.1"; sha256="0nyq5rv5mfvvh2h9f1d7b5agwhjagpzjgfm8x0bwpdbz6k691glx"; depends=[AnnotationDbi Biobase BiocGenerics digest genefilter GenomicRanges IRanges limma Matrix S4Vectors snpStats SummarizedExperiment]; };
-GGtools = derive { name="GGtools"; version="5.5.1"; sha256="0r16yc6j68baf7pl3f708ys745px6qgpgbvcjiqqg7vgcj4qyq0h"; depends=[AnnotationDbi biglm Biobase BiocGenerics Biostrings bit data_table ff GenomeInfoDb GenomicRanges GGBase ggplot2 Gviz hexbin IRanges iterators reshape2 ROCR Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; };
+GGBase = derive { name="GGBase"; version="3.31.2"; sha256="0xbkj7dr7xaq3pj4jph5ii78c4ax5b0p6jqmvkv2hr3j70qk3mh2"; depends=[AnnotationDbi Biobase BiocGenerics digest genefilter GenomicRanges IRanges limma Matrix S4Vectors snpStats SummarizedExperiment]; };
+GGtools = derive { name="GGtools"; version="5.5.2"; sha256="13zgfribckaxp2gl15fg1bds9rw9ysbf87mhzxm8qh1rqgkf8rbn"; depends=[AnnotationDbi biglm Biobase BiocGenerics Biostrings bit data_table ff GenomeInfoDb GenomicRanges GGBase ggplot2 Gviz hexbin IRanges iterators reshape2 ROCR Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; };
 GLAD = derive { name="GLAD"; version="2.33.0"; sha256="19db59ry832vrbk86p1bppr52mwri2pz8iwx5ibg18pxr7pw6jw7"; depends=[]; };
 GOFunction = derive { name="GOFunction"; version="1.17.0"; sha256="0scjk4zlfrqv3z6ii0bvmhj3d880xyc2p5f4hqmfqn6cml0d6ncj"; depends=[AnnotationDbi Biobase graph Rgraphviz SparseM]; };
-GOSemSim = derive { name="GOSemSim"; version="1.27.3"; sha256="0d57my1zmlfsx1d1i55q82s4vzz6v7a7q8h8fkxxzs7wl8pjk5jh"; depends=[AnnotationDbi Rcpp]; };
+GOSemSim = derive { name="GOSemSim"; version="1.27.4"; sha256="0czg7qincsv001caqsswyz94hzj0ykjy1qhva9rg5zhpfjwdahwq"; depends=[AnnotationDbi Rcpp]; };
 GOSim = derive { name="GOSim"; version="1.7.0"; sha256="0dzx6nnd8p4p5v5rsmbpw6wl0i1jq3n4s0qc8z4xnp2n2757r2z4"; depends=[annotate AnnotationDbi cluster corpcor flexmix graph Matrix RBGL Rcpp topGO]; };
-GOTHiC = derive { name="GOTHiC"; version="1.5.2"; sha256="1jxg3hfyy96nwgmpk4ivl2wp3i050n7zahbawiz6d8f2hxcv44zg"; depends=[BiocGenerics Biostrings BSgenome data_table GenomicRanges ggplot2 IRanges rtracklayer S4Vectors ShortRead]; };
-GOexpress = derive { name="GOexpress"; version="1.3.1"; sha256="0wqip9ibzjy73b431wlifb6c01c397wkl7nldpj3mvd25s73p102"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer stringr VennDiagram]; };
+GOTHiC = derive { name="GOTHiC"; version="1.5.4"; sha256="15kn6v7q3n188zp2vmkqc3kzxf9645zycl47fr5qw9x6ymqhngbp"; depends=[BiocGenerics Biostrings BSgenome data_table GenomicRanges ggplot2 IRanges rtracklayer S4Vectors ShortRead]; };
+GOexpress = derive { name="GOexpress"; version="1.3.2"; sha256="151hqhyjaq3ggigibw8fc1zb09578p69ih09rj3irf0avpai6rbi"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer stringr VennDiagram]; };
 GOstats = derive { name="GOstats"; version="2.35.1"; sha256="1almz6gc2xm3njz8pjvynpnniz7xdd8z5293cfvx91v11lz70v7f"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category graph RBGL]; };
 GOsummaries = derive { name="GOsummaries"; version="2.3.0"; sha256="09c4grz9ljwrz37yv9k6gna9zxk708vxfz2190xz7za0mrql1k3k"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; };
 GRENITS = derive { name="GRENITS"; version="1.21.0"; sha256="1lm0074dw0248vyj9wl99if489dx38ia8wscx61842jyi4qz7r2q"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; };
-GSAR = derive { name="GSAR"; version="1.3.0"; sha256="1mf7v3v7arcrkx1207wsr0ajjqk8ipq2j9fdd6677ard7xvdj6zl"; depends=[igraph]; };
+GSAR = derive { name="GSAR"; version="1.3.2"; sha256="0fqv6lwi94ibwjjv6g0qmc8plc0ghszvjpd73m88080jiaw44yfl"; depends=[igraph]; };
 GSCA = derive { name="GSCA"; version="1.7.0"; sha256="1hv9r59fx1hbjnga26shb8crxji1bzmzjmwfbk1wrlm8dsikjnyg"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; };
 GSEABase = derive { name="GSEABase"; version="1.31.3"; sha256="1jq3s3pha624gns7d7yf8qqgzq0fm3qgjrkwdkxgbpc7b09baiz0"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; };
 GSEAlm = derive { name="GSEAlm"; version="1.29.0"; sha256="13ixp6vq9g9ag5rndc40gw64vny70zcj6lll7r7vz06p5i9b6kyk"; depends=[Biobase]; };
 GSRI = derive { name="GSRI"; version="2.17.0"; sha256="158dipqi9mh79d42pv5qsa1gwxz660kl474rdnkd59rnxh7ziyf3"; depends=[Biobase fdrtool genefilter GSEABase les]; };
 GSReg = derive { name="GSReg"; version="1.3.0"; sha256="07s60j68i1r64y8x8r1r9s6w020n41137cf2aj9hrsw6gn4ajh15"; depends=[]; };
 GSVA = derive { name="GSVA"; version="1.17.0"; sha256="0rk1srk95qia5ap69c2lysgv7r8qh50f50v9b569d2v2vjb0hpq5"; depends=[Biobase BiocGenerics GSEABase]; };
-GWASTools = derive { name="GWASTools"; version="1.15.8"; sha256="1rbpvscz7ghssxan02xs14cx7x69wi7vydai9q6ljl7nkazh4hgj"; depends=[Biobase DBI DNAcopy gdsfmt GWASExactHW lmtest logistf ncdf quantsmooth RSQLite sandwich survival]; };
+GWASTools = derive { name="GWASTools"; version="1.15.12"; sha256="04k5grfbrcpwnxxpirzb7x9488q8sq19lg00yn4mhpr7y1znrmpc"; depends=[Biobase DBI DNAcopy gdsfmt GWASExactHW lmtest logistf ncdf quantsmooth RSQLite sandwich survival]; };
 GeneAnswers = derive { name="GeneAnswers"; version="2.11.1"; sha256="15rf8syxhj3332d7f4jkvyby05r3iia7p1ryz1zv629waz6mr4nh"; depends=[annotate Biobase downloader Heatplus igraph MASS RBGL RColorBrewer RCurl RSQLite XML]; };
 GeneExpressionSignature = derive { name="GeneExpressionSignature"; version="1.15.0"; sha256="0wni584412af8a2wzk5r8nf63grw86d6fk74cmwksirw2734mmqs"; depends=[Biobase PGSEA]; };
 GeneGA = derive { name="GeneGA"; version="1.19.0"; sha256="0irfr4q55rda8acchgcqsksh6ija87fryj822nb3d4zklv9raqfv"; depends=[hash seqinr]; };
@@ -221,12 +222,12 @@ GeneticsDesign = derive { name="GeneticsDesign"; version="1.37.0"; sha256="08awf
 GeneticsPed = derive { name="GeneticsPed"; version="1.31.0"; sha256="17fs4gvirji3qp9ik480jpz6qrbq209sjhn57ipkaafvx7rw5j4i"; depends=[gdata genetics MASS]; };
 GenoView = derive { name="GenoView"; version="1.3.0"; sha256="09k9xjmx3qmsfr3a4vrfgs73r0xsymf5m4gl0zjjk4cnfk7bs41v"; depends=[biovizBase GenomicRanges ggbio ggplot2 gridExtra]; };
 GenomeGraphs = derive { name="GenomeGraphs"; version="1.29.0"; sha256="0kl2gapg7hnl4zfsamb3vwmj7z0vag7vd8viwh0pwqj0pd45dswa"; depends=[biomaRt]; };
-GenomeInfoDb = derive { name="GenomeInfoDb"; version="1.5.7"; sha256="1hk3q4wr87wflrcqrpdng70d42irf3v4i6av224pqq3h33j0iwpc"; depends=[BiocGenerics IRanges S4Vectors]; };
-GenomicAlignments = derive { name="GenomicAlignments"; version="1.5.9"; sha256="15zwx5z54cr3ix55m70682n1xxfbbx92z3m0qr7srsn8q9ycc8kj"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; };
+GenomeInfoDb = derive { name="GenomeInfoDb"; version="1.5.8"; sha256="0kdz1mkn3ljwxcz6v0np7gbb7b7sqxfj80sxrah3bnck2bzg1yra"; depends=[BiocGenerics IRanges S4Vectors]; };
+GenomicAlignments = derive { name="GenomicAlignments"; version="1.5.11"; sha256="1w4wmxcyj0ja9nkn35n5qhhax0b7sh4pjxk2hib71323y80mxlld"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; };
 GenomicFeatures = derive { name="GenomicFeatures"; version="1.21.13"; sha256="1swk94rqpvfysr3x1r61ypq9vlw1ryc0iw0x6dazfjjchaln0h07"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors]; };
-GenomicFiles = derive { name="GenomicFiles"; version="1.5.3"; sha256="03iq136ff0dymfnwyizq9zyzr3smahwp8p6ifc7yf1hwd0nql3wa"; depends=[BiocGenerics BiocParallel GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; };
-GenomicInteractions = derive { name="GenomicInteractions"; version="1.3.3"; sha256="0z5c8n0xnyxrdhvffyx8mnpj2qhclknn1gjn3ikmw9cprzlbcb6n"; depends=[BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra igraph IRanges plotrix Rsamtools rtracklayer S4Vectors stringr]; };
-GenomicRanges = derive { name="GenomicRanges"; version="1.21.15"; sha256="0sjv8b6vhqpg54v83zkai57xmx0axq7khr35l89b4rc3qd9i8k5c"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; };
+GenomicFiles = derive { name="GenomicFiles"; version="1.5.4"; sha256="13lglgxkqsxgi453dk56ry7amnv6lyddy74fnhhsqinj5ip9k3vw"; depends=[BiocGenerics BiocParallel GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
+GenomicInteractions = derive { name="GenomicInteractions"; version="1.3.4"; sha256="1dh9l0abwfc9dkznvpnzsxlggifvh8zfcmb22mc36lnkq42r033d"; depends=[BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra igraph IRanges plotrix Rsamtools rtracklayer S4Vectors stringr]; };
+GenomicRanges = derive { name="GenomicRanges"; version="1.21.16"; sha256="11s14ikk2pj3hycanyjv6s1pild3987gfvf4vnzm6a6ilmqsyqzy"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; };
 GenomicTuples = derive { name="GenomicTuples"; version="1.3.1"; sha256="0i91qs1c84lyh0irhgnbnnvag0j3f48gfxxndk5x0yjf9kpa0hca"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; };
 Genominator = derive { name="Genominator"; version="1.23.0"; sha256="03pacbd3d5q7ykrflg258zcf8yfzm8kc976aw3d38q7agkia69h2"; depends=[BiocGenerics DBI GenomeGraphs IRanges RSQLite]; };
 GlobalAncova = derive { name="GlobalAncova"; version="3.37.0"; sha256="1j35r39plsxlkla2bv7wvg0if5gs2mfy71g6zb65g6ml5cqws45r"; depends=[annotate AnnotationDbi corpcor globaltest]; };
@@ -235,7 +236,7 @@ GraphAT = derive { name="GraphAT"; version="1.41.0"; sha256="1mjd54zy4l7ivy347zn
 GraphAlignment = derive { name="GraphAlignment"; version="1.33.0"; sha256="14zxbw8cj12wr6c2a0a6mfskr9sqf6cdfyz0ccbzy91d1lnrxzdf"; depends=[]; };
 GraphPAC = derive { name="GraphPAC"; version="1.11.0"; sha256="1p0rkc1qz0yf0lxyjfvrpd7nqky855kmhb1pdwxg3ckifnypw5mc"; depends=[igraph iPAC RMallow TSP]; };
 GreyListChIP = derive { name="GreyListChIP"; version="1.1.1"; sha256="0kbl9m37aiyv6yrqg4z352k7dpdpxm7yywymjfa9gdd0rv1cy401"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer]; };
-Gviz = derive { name="Gviz"; version="1.13.2"; sha256="0na13x76dlnddiijxigr4j75xb9dcg32j0gbkqkzjak9azp8szys"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; };
+Gviz = derive { name="Gviz"; version="1.13.3"; sha256="0qbad4r0k7j1z4gg785iv57azp9ljlxv5jngnk9kfif05rd3k7v3"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; };
 HCsnip = derive { name="HCsnip"; version="1.9.0"; sha256="14f881v776xn8lw4lvjc26s72laxs9zph902875f76ykbzygayd9"; depends=[Biobase clusterRepro coin fpc impute randomForestSRC sigaR sm survival]; };
 HDTD = derive { name="HDTD"; version="1.3.2"; sha256="19kzd1sjl0riwisdbrsy9j2pd39lpxwmizrnnj65hrfv6dwaqsgq"; depends=[]; };
 HELP = derive { name="HELP"; version="1.27.0"; sha256="1n2fj316ha2l941biyr9d56pry6n39drwa820rgyrwd116rzx79d"; depends=[Biobase]; };
@@ -248,14 +249,16 @@ HTSeqGenie = derive { name="HTSeqGenie"; version="3.19.0"; sha256="0i9h6qn2fpcp6
 HTqPCR = derive { name="HTqPCR"; version="1.23.0"; sha256="0zp7jbnh5zbrqaq84q1146sb3qg8n0kz6m9v5mi8a9l2fcvg2q09"; depends=[affy Biobase gplots limma RColorBrewer]; };
 Harshlight = derive { name="Harshlight"; version="1.41.0"; sha256="12wpfg785dfn5gwp014dfzk9x8zqvr9qrrs0pq32by576knida5z"; depends=[affy altcdfenvs Biobase]; };
 Heatplus = derive { name="Heatplus"; version="2.15.1"; sha256="1jcrajxvll0hhrsq8qvvyc1sj1nd3dm06n8q25qi9nacnfi865y7"; depends=[]; };
-HiTC = derive { name="HiTC"; version="1.13.1"; sha256="0mhfrxhfd11218pw6yn0l7dn3x5k90s07k53h1gj1j93i64gzzxg"; depends=[Biostrings GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; };
+HiTC = derive { name="HiTC"; version="1.13.2"; sha256="1bkd680n81cd7sdji6gjjljxhlbsrdgn5hwpmi37i83hnryfgf5x"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; };
 HilbertVis = derive { name="HilbertVis"; version="1.27.0"; sha256="1qcyzn86v0xhb9zc1vcia1n53i33sgncbb7lpink5llmjpalacq6"; depends=[lattice]; };
 HilbertVisGUI = derive { name="HilbertVisGUI"; version="1.27.0"; sha256="03jxn398xv97mmvbpl0qymmydhm4i4c36qnw4s22ch7wy3h9x6h8"; depends=[HilbertVis]; };
 HybridMTest = derive { name="HybridMTest"; version="1.13.0"; sha256="0r4j8yllxzwn5r2rvpkqx6w23836lmly8wlshib6p917ky0djw4s"; depends=[Biobase fdrtool MASS survival]; };
 IMPCdata = derive { name="IMPCdata"; version="1.3.0"; sha256="003qvf47bcfcwxkw7zpzdvpnw7xhd2y12n9by2b1ns5i5jka754b"; depends=[rjson]; };
 INPower = derive { name="INPower"; version="1.5.0"; sha256="0msz24bixp7b5a83n40675xq8fglrhbg8972a93x2k8jgb5gdh38"; depends=[mvtnorm]; };
+INSPEcT = derive { name="INSPEcT"; version="0.99.8"; sha256="0pzh0xkh4py6rwnjqz4wqfnk2h08dp5q9gc4cgxls6gl3574i9ny"; depends=[Biobase BiocParallel deSolve GenomicFeatures GenomicRanges IRanges preprocessCore pROC rootSolve]; };
+IONiseR = derive { name="IONiseR"; version="0.99.6"; sha256="1fzp7ncznqw7pmb4sh1qphrk0ham1158q71kiylggbm88wlisky3"; depends=[BiocGenerics Biostrings data_table dplyr ggplot2 magrittr rhdf5 ShortRead tidyr XVector]; };
 IPPD = derive { name="IPPD"; version="1.17.0"; sha256="0afhz5ishr1my9gnksa4dl92lfnb2fnvdpsh3n7kj4j2s8xx0crc"; depends=[bitops digest MASS Matrix XML]; };
-IRanges = derive { name="IRanges"; version="2.3.11"; sha256="06914mn3x097km2i4p8z4zj99msr1dvlqk50ari1djcnww0im251"; depends=[BiocGenerics S4Vectors]; };
+IRanges = derive { name="IRanges"; version="2.3.14"; sha256="0pg6zbdhhpk7h64nma9zrdjxvfk2nwad9b9x8y1qnkki8917a1xd"; depends=[BiocGenerics S4Vectors]; };
 ITALICS = derive { name="ITALICS"; version="2.29.0"; sha256="16l0wq7bxi3nz8f5hggnzddhg07vrcca480ygvmi03cxajxbjr9h"; depends=[affxparser DBI GLAD oligo oligoClasses]; };
 IVAS = derive { name="IVAS"; version="1.1.0"; sha256="15jnmi40bsnyf5yw86gvqppv0g8250lsi74gsjzhm7gijhlxfnrm"; depends=[AnnotationDbi BiocGenerics doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges lme4 Matrix S4Vectors]; };
 Icens = derive { name="Icens"; version="1.41.0"; sha256="1vi2hnzs8z5prggswa6wzr2y53jczkgg09f4vw0pjzkzi7p8bphy"; depends=[survival]; };
@@ -276,7 +279,7 @@ LPEadj = derive { name="LPEadj"; version="1.29.0"; sha256="1734ihzvid5bz2wyh7ysk
 LVSmiRNA = derive { name="LVSmiRNA"; version="1.19.0"; sha256="1z74y8zbg5amsmslb309gi630v8qa1qqgj37214bv5g9ab8xajmj"; depends=[affy Biobase BiocGenerics limma MASS quantreg SparseM vsn zlibbioc]; };
 LiquidAssociation = derive { name="LiquidAssociation"; version="1.23.0"; sha256="178gx8n0ga1ppjk368xacidms1rc2kn301fmdc8rwbcknwvxrwck"; depends=[Biobase geepack]; };
 LowMACA = derive { name="LowMACA"; version="1.1.0"; sha256="0i0pka0jf1yq7vjw1kb9sd2p21gpy4pw855ap815k02i0n7jyny4"; depends=[Biostrings cgdsr data_table motifStack RColorBrewer reshape2 stringr]; };
-M3D = derive { name="M3D"; version="1.3.4"; sha256="0yyhfs8frvyx0dk0k61a4xggqdrspx07jxhhl9q7bld026bv8d9d"; depends=[BiSeq GenomicRanges IRanges]; };
+M3D = derive { name="M3D"; version="1.3.5"; sha256="1pjfl0kdhzw9l59qzgxjkf60w0rjdswm8wc12cyk39190hnalh49"; depends=[BiSeq GenomicRanges IRanges]; };
 MAIT = derive { name="MAIT"; version="1.3.1"; sha256="1kpcns5f9j41sg5694ng4d0w5gil2qwi9s1804gncnnh273jsv5z"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; };
 MANOR = derive { name="MANOR"; version="1.41.1"; sha256="0i1fk4c72k91i0w84b0swgdbd4igvbcrbcs12dqqxcslnqg44rs2"; depends=[GLAD]; };
 MBASED = derive { name="MBASED"; version="1.3.1"; sha256="0rdsv7qv5x6whb5jx4wzgcv88z6hwmf5ryz84liv7kg1i1pq1adn"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; };
@@ -287,8 +290,8 @@ MEDIPS = derive { name="MEDIPS"; version="1.19.2"; sha256="1k4bdvqsp9rrxadz79g4j
 MEDME = derive { name="MEDME"; version="1.29.0"; sha256="1fpi4ri134ii28nfiq2p875xinwvs8icrxvw158g5k7ixy1zx826"; depends=[Biostrings drc MASS]; };
 MEIGOR = derive { name="MEIGOR"; version="1.3.0"; sha256="1kif7m78w0w0qv4fqfby3rknqk56zk83dds3cm4pgv2cii61i9jy"; depends=[CNORode deSolve Rsolnp snowfall]; };
 MGFM = derive { name="MGFM"; version="1.3.0"; sha256="1h2bi2cchfxl0z31pgj6q6pb1jnmqvjy7jv2khp80h7sdr65356i"; depends=[annotate AnnotationDbi]; };
-MIMOSA = derive { name="MIMOSA"; version="1.7.0"; sha256="0kw2f3gk0fxfv393gh2mlnw4hy658j6ga20rhkbza1hzyyz44mvk"; depends=[Biobase coda data_table Formula ggplot2 Kmisc MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape scales testthat]; };
-MLInterfaces = derive { name="MLInterfaces"; version="1.49.0"; sha256="0h5pr3lkgr6wb2h8dik2p4zv62p1hx22anxsbzbxsd4k4n9yzxd4"; depends=[annotate Biobase BiocGenerics cluster gdata genefilter MASS pls rda rpart sfsmisc]; };
+MIMOSA = derive { name="MIMOSA"; version="1.7.1"; sha256="1gzm90ii18vvpfd2nnl34mcvbvi49ck4hd7c5yziac8m3gx2f9f2"; depends=[Biobase coda data_table Formula ggplot2 Kmisc MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape scales testthat]; };
+MLInterfaces = derive { name="MLInterfaces"; version="1.49.3"; sha256="1c7l9xwyx72hmv4rs24xm4bzj3lzaaj0ax71yw1p008rkgj8ifxz"; depends=[annotate Biobase BiocGenerics cluster fpc gdata genefilter ggvis htmltools MASS pls rda rpart sfsmisc shiny]; };
 MLP = derive { name="MLP"; version="1.17.0"; sha256="1wb6bzxn1paba2fxh62ldsfr4kr0nq2sy21v0pp0qwhfxndyzpdn"; depends=[affy AnnotationDbi gdata gmodels gplots gtools plotrix]; };
 MLSeq = derive { name="MLSeq"; version="1.7.0"; sha256="0vc5rz4l574hmzwn3q7c4giib0lzs720j0j3alvarb3lmfzx9mhq"; depends=[Biobase caret DESeq2 edgeR limma randomForest]; };
 MMDiff = derive { name="MMDiff"; version="1.9.0"; sha256="0xvnv024cv540m0jv9lrb4s5rvc0mq4gwp6wvdgpnsnqnwi9j556"; depends=[Biobase DiffBind GenomicRanges GMD IRanges Rsamtools]; };
@@ -296,7 +299,7 @@ MPFE = derive { name="MPFE"; version="1.5.0"; sha256="123a6qg761j46bs1ckd6yyr2ig
 MSGFgui = derive { name="MSGFgui"; version="1.3.0"; sha256="0r7izs3wpd7l9agrm3mrr3kmm00s9fzljsjxhk4pzxkjg1ran4hp"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; };
 MSGFplus = derive { name="MSGFplus"; version="1.3.0"; sha256="0q75mygrd56kr9hrrxlmckkgvhcrgvpgvbjdxjmz6jaqp5wfbkf5"; depends=[mzID]; };
 MSnID = derive { name="MSnID"; version="1.3.1"; sha256="0a0r2ikyb0spm110xzn3zzhl8g6xsvmh781d65f10l1iqnd2cqza"; depends=[Biobase data_table doParallel foreach iterators MSnbase mzID ProtGenerics R_cache Rcpp reshape2]; };
-MSnbase = derive { name="MSnbase"; version="1.17.4"; sha256="0ig62281xic977br9ddibcafrad2cwc49cqs7vz5i3gg9nf46iby"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant mzID mzR pcaMethods plyr preprocessCore ProtGenerics Rcpp reshape2 S4Vectors vsn]; };
+MSnbase = derive { name="MSnbase"; version="1.17.11"; sha256="1yrzmanv87rpahpqg40vqx23baahq41w3j7zag8chygr2xhxkjxy"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant mzID mzR pcaMethods plyr preprocessCore ProtGenerics Rcpp reshape2 S4Vectors vsn]; };
 MSstats = derive { name="MSstats"; version="2.7.0"; sha256="0zhv2c769biv6avb4csi7alabk76bfn0ykzwp0lc6ymzggbj9pil"; depends=[ggplot2 gplots limma lme4 marray MSnbase preprocessCore Rcpp reshape]; };
 MVCClass = derive { name="MVCClass"; version="1.43.0"; sha256="1mbhfkvdkxw9xd76dd2pxk947w9wahwdsk9x1wcryrmwcdvaqqcz"; depends=[]; };
 MantelCorr = derive { name="MantelCorr"; version="1.39.0"; sha256="0l255m63q9idv56svs5m5bc4izwqnm3jy2z3kka7sw4xcx13l39g"; depends=[]; };
@@ -312,12 +315,12 @@ MethTargetedNGS = derive { name="MethTargetedNGS"; version="1.1.0"; sha256="0bsp
 MethylAid = derive { name="MethylAid"; version="1.3.1"; sha256="012ypjnw5ky6233dibx2hpryzbr66g86hm14cjfd45fzr08bv08z"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny]; };
 MethylMix = derive { name="MethylMix"; version="1.3.0"; sha256="181sz3ny79i8gaq3y2k0q56l03ii288lhy8xv1fsh94bjhihjgcd"; depends=[doParallel foreach optimx RColorBrewer RPMM]; };
 MethylSeekR = derive { name="MethylSeekR"; version="1.9.0"; sha256="1hp2qadkkkanp3cs0gqwyvn94qy1v34gcjhx730p55iq1had5dcf"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; };
-Mfuzz = derive { name="Mfuzz"; version="2.29.1"; sha256="06xzb670y19ry1fr97xw8j3gcagqnyaxlclscx3w1m2qfss5wi15"; depends=[Biobase e1071 tkWidgets]; };
+Mfuzz = derive { name="Mfuzz"; version="2.29.3"; sha256="10qblp4xg6506f1j1v3n0k4m3f5hdrzv2m35szh0xdi2jxlc1m9k"; depends=[Biobase e1071 tkWidgets]; };
 MiChip = derive { name="MiChip"; version="1.23.0"; sha256="0np5drks6nfg3aw8qm899syxv1z56608bhav1jid4ks9fwdi33bb"; depends=[Biobase]; };
 MiPP = derive { name="MiPP"; version="1.41.0"; sha256="1zp8j123fx82xdc3dvn4a17mspw2pdxxlyj4f750vzwc4ma9pj39"; depends=[Biobase e1071 MASS]; };
 MiRaGE = derive { name="MiRaGE"; version="1.11.1"; sha256="1nkvk07kgps9rzh362pczlsq0r7g8b85f4bdbi0ld5p0ijdd02f3"; depends=[AnnotationDbi Biobase BiocGenerics]; };
 MineICA = derive { name="MineICA"; version="1.9.0"; sha256="0gfdnlahsm206vw443ml872dr1k5sg6w9hsdd3gkwzm0lsrxqd7x"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi marray mclust plyr RColorBrewer Rgraphviz scales xtable]; };
-MinimumDistance = derive { name="MinimumDistance"; version="1.13.2"; sha256="09rpwh75gdn5s5i4vd3nk97ns04q7vfspbm7r0mjjrjnidd0fxlf"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; };
+MinimumDistance = derive { name="MinimumDistance"; version="1.13.3"; sha256="1aha0ab1ki0ab6yaflqmjr19igkaqn84rlxk5h5j612y9qv04pvs"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; };
 Mirsynergy = derive { name="Mirsynergy"; version="1.5.0"; sha256="0nbdnz3m99r3zlkqqya4xs944a3zy0daqxbnf5gn4033z2kgd10s"; depends=[ggplot2 gridExtra igraph Matrix RColorBrewer reshape scales]; };
 MmPalateMiRNA = derive { name="MmPalateMiRNA"; version="1.19.0"; sha256="0pnbzqh90vqcgsh1swvhy8w2k1vj24k5j9m4sb7qwhi2h5y1gzwa"; depends=[Biobase lattice limma statmod vsn xtable]; };
 MoPS = derive { name="MoPS"; version="1.3.0"; sha256="0sf7v7clghm48g2ryainsyvsl67nqq4xha71zc1r5w9fz33xa5mv"; depends=[Biobase]; };
@@ -331,7 +334,7 @@ NOISeq = derive { name="NOISeq"; version="2.11.1"; sha256="13q3v2jphridbjk1059c4
 NTW = derive { name="NTW"; version="1.19.0"; sha256="027rdvy8xpsa70g6x33v4fmzk8gyvd8p3lgf65ac36wcy120gyhl"; depends=[mvtnorm]; };
 NanoStringQCPro = derive { name="NanoStringQCPro"; version="1.1.1"; sha256="0mmbbxhxd7nh7mqzckw0as68ac0nv005liif0laadbz49y6p4rwm"; depends=[AnnotationDbi Biobase knitr NMF png RColorBrewer]; };
 NarrowPeaks = derive { name="NarrowPeaks"; version="1.13.2"; sha256="0cryjprj8y1fgn5xxzsyyv4zdzv5qy8405qkj47kvjbrk0kbr97s"; depends=[BiocGenerics CSAR fda GenomeInfoDb GenomicRanges ICSNP IRanges S4Vectors]; };
-NetPathMiner = derive { name="NetPathMiner"; version="1.5.0"; sha256="0z0bppsvy1zzbx8fspmsgzw7vzf5x649762znaqpfabvy6bpp2xk"; depends=[igraph]; };
+NetPathMiner = derive { name="NetPathMiner"; version="1.5.2"; sha256="0k3vq5l95hapw8hbc00m4pchxwzylp97y20w21g0g1yaf1cf9br0"; depends=[igraph]; };
 NetSAM = derive { name="NetSAM"; version="1.9.0"; sha256="1bdch37kk1clb8cyffrlcr6d5qykk5a5ql3dfi94bw1l0w6v4fjq"; depends=[graph igraph seriation]; };
 NormqPCR = derive { name="NormqPCR"; version="1.15.0"; sha256="0nfjnx5id04nbkda9v66418yzpp88mq2ijsfn8jyg0sfika405nl"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; };
 NuPoP = derive { name="NuPoP"; version="1.19.0"; sha256="1dpqmhbwr1l95vgjxlw3xayjxksa909xj05jbf4x3gafnlkkdvbk"; depends=[]; };
@@ -342,12 +345,12 @@ OSAT = derive { name="OSAT"; version="1.17.0"; sha256="1ky9xb5ls3xnzinsrxrgggb4r
 OTUbase = derive { name="OTUbase"; version="1.19.0"; sha256="0xmp446v57z875lmjkg47f9hx961af9nda658v8qlbjxf1wjw9zb"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; };
 OmicCircos = derive { name="OmicCircos"; version="1.7.0"; sha256="1xil5043hgpypaww1a1wvcxw9im9jmzgdp83p3z71giqiq36dvh4"; depends=[GenomicRanges]; };
 OmicsMarkeR = derive { name="OmicsMarkeR"; version="1.1.0"; sha256="1fw6zfp5jrkvxjb6j48q3n1fqkm1qmmjjvmr70v93hi5jg0an8gy"; depends=[assertive caret caTools data_table DiscriMiner e1071 foreach gbm glmnet pamr permute plyr randomForest]; };
-OncoSimulR = derive { name="OncoSimulR"; version="1.3.2"; sha256="0bm4p5wpp32kd90c7mx76d8iy1jxxfssnkg3wrrglcfi0qqzs404"; depends=[data_table graph Rcpp Rgraphviz]; };
+OncoSimulR = derive { name="OncoSimulR"; version="1.99.5"; sha256="0pjn2kirf1b72fvqxjawxcbrsn42brhz09kjnywm611kap329dq2"; depends=[data_table graph gtools igraph Rcpp Rgraphviz]; };
 OperaMate = derive { name="OperaMate"; version="0.99.6"; sha256="0xh57d82rmfcs1a6gj0qcjf585drhzns5k69bwxb7x1xw63wp4kp"; depends=[ggplot2 MASS pheatmap RDAVIDWebService]; };
 OrderedList = derive { name="OrderedList"; version="1.41.0"; sha256="1cw8y5f5h15z0qwg8n4dq7g3ixx2wa332rdsb4w2qqmcqlz79bfp"; depends=[Biobase twilight]; };
-OrganismDbi = derive { name="OrganismDbi"; version="1.11.32"; sha256="15zl741nw38yq07wp8rp5w1jzvyg8cz10dcyirv28rqs9nhz6q7b"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller GenomicFeatures GenomicRanges graph IRanges RBGL RSQLite S4Vectors]; };
+OrganismDbi = derive { name="OrganismDbi"; version="1.11.42"; sha256="0y0v5ngall7iyvx2bqhfkxdnw9alkyab5f6qgpq8dpvr6pvyamyl"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller GenomicFeatures GenomicRanges graph IRanges RBGL RSQLite S4Vectors]; };
 OutlierD = derive { name="OutlierD"; version="1.33.0"; sha256="0bljxmrnlqcngzzv6yxjsim7gd4icyi384vimn5gs869mq9gyrj3"; depends=[Biobase quantreg]; };
-PAA = derive { name="PAA"; version="1.3.0"; sha256="1786prxxf3yk4zgs8qcrnxf9i7b3dwaq21cj2hsz4xsrnskygcs0"; depends=[e1071 limma MASS mRMRe randomForest Rcpp ROCR sva]; };
+PAA = derive { name="PAA"; version="1.3.2"; sha256="1p9900wiy5mmcmwb4l5n8kvsjs3ay6k0k551mpjbwijhk2si7wja"; depends=[e1071 limma MASS mRMRe randomForest Rcpp ROCR sva]; };
 PADOG = derive { name="PADOG"; version="1.11.0"; sha256="0x84k32fmd1zrwjc4f71mq4jslh9bxr4gjbl48k1f5kl5j6hlxj3"; depends=[AnnotationDbi Biobase doRNG foreach GSA limma nlme]; };
 PANR = derive { name="PANR"; version="1.15.0"; sha256="0nc2a10z7i16dz41yhz3zw9h51myxzxbxd1vpc2d8gczks07n6ch"; depends=[igraph MASS pvclust RedeR]; };
 PAPi = derive { name="PAPi"; version="1.9.0"; sha256="1553fxm3ma3p5j10acyk5m2wx4dafp346x0pyxj9aah856h4zkw5"; depends=[KEGGREST svDialogs]; };
@@ -370,19 +373,20 @@ PathNet = derive { name="PathNet"; version="1.9.0"; sha256="1dqai2ys5vfhhqqghh1x
 Pbase = derive { name="Pbase"; version="0.9.0"; sha256="1j0b2ajlsk42kxakh4vhcd9ias1fxr4cna4h52hrinxi9jml9ywx"; depends=[Biobase BiocGenerics biomaRt Biostrings cleaver GenomicRanges Gviz IRanges MSnbase mzID mzR Pviz Rcpp rtracklayer S4Vectors]; };
 PhenStat = derive { name="PhenStat"; version="2.3.0"; sha256="0irasfwks5w5a25zkp0qhasrk5nvahbijsncfbmpimac5cwps1an"; depends=[car logistf MASS nlme nortest]; };
 Polyfit = derive { name="Polyfit"; version="1.3.0"; sha256="0zdd85bshdcf85asq93wbbrj26fa5d6xkmgdyrqg9hawdznj9kip"; depends=[DESeq]; };
+Prize = derive { name="Prize"; version="0.99.16"; sha256="0bm93kipmyypqsp17f316k83gwrfpzqjqhlf44kmb5ris5s1fdyb"; depends=[diagram ggplot2 gplots matrixcalc reshape2 stringr]; };
 ProCoNA = derive { name="ProCoNA"; version="1.7.0"; sha256="1x2wmlhlizd09v4d7q98cfplqqmxcagi43rl9ibdah04n7k35zpd"; depends=[BiocGenerics flashClust GOstats MSnbase WGCNA]; };
 ProtGenerics = derive { name="ProtGenerics"; version="1.1.0"; sha256="1l77j3zl78v86jbxpwnyc0a5q66yds79nirlcvan789hxbggr0i4"; depends=[BiocGenerics]; };
 Pviz = derive { name="Pviz"; version="1.3.0"; sha256="0pvmpxw4dpxxs9lrn9nn44rn36r3l09rwlkh5ph054h56nm80xs1"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; };
-QDNAseq = derive { name="QDNAseq"; version="1.5.0"; sha256="16qp5r8gl81a4arpb6kac387dnc0ng4vilfv1gfqr4rjkpp0gks2"; depends=[Biobase CGHbase CGHcall DNAcopy matrixStats R_utils Rsamtools]; };
+QDNAseq = derive { name="QDNAseq"; version="1.5.1"; sha256="1gykm8r410s9aw75km0f8wnhd0p8gqirszp70g5x97n83r4k6rnq"; depends=[Biobase CGHbase CGHcall DNAcopy matrixStats R_utils Rsamtools]; };
 QUALIFIER = derive { name="QUALIFIER"; version="1.13.0"; sha256="0vk3xx0dmxadxk1wmcnf9cxv7rr4z8624npkmdbqlzb6mxix7p6d"; depends=[Biobase data_table flowCore flowViz flowWorkspace hwriter lattice latticeExtra MASS ncdfFlow reshape XML]; };
 QuartPAC = derive { name="QuartPAC"; version="1.1.0"; sha256="0w92hggwihp2nia9dzg8yjbfsyrcgwq4kpxh96jb8kkmq6kl2l8p"; depends=[data_table GraphPAC iPAC SpacePAC]; };
-QuasR = derive { name="QuasR"; version="1.9.8"; sha256="0ij9lkqld0pkbf6hq731ygzhj1nf864y6rxzys8f4j7g871lbm1w"; depends=[Biobase BiocGenerics BiocInstaller BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rbowtie Rsamtools S4Vectors ShortRead zlibbioc]; };
+QuasR = derive { name="QuasR"; version="1.9.9"; sha256="13md1pq0bg9xdlhvwsys3f7ibqll80viica03h2l4cnhgw26zj52"; depends=[Biobase BiocGenerics BiocInstaller BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rbowtie Rsamtools rtracklayer S4Vectors ShortRead zlibbioc]; };
 R3CPET = derive { name="R3CPET"; version="1.1.0"; sha256="0vwyrqsihnabzqh5r329v3f5zcg2ik51aakvscpp482z0dm2naqh"; depends=[clues clValid data_table DAVIDQuery GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp reshape2 S4Vectors]; };
 R453Plus1Toolbox = derive { name="R453Plus1Toolbox"; version="1.19.1"; sha256="0fp8hx9igfjaj1dvfxs54r5krhsp1hbmlqs9vac3g6ga51268rir"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; };
 RBGL = derive { name="RBGL"; version="1.45.1"; sha256="0y90pvl3i8pyzxwssciygcd1c1lb8a0rqhpiqgif56075amm71rl"; depends=[graph]; };
 RBM = derive { name="RBM"; version="1.1.0"; sha256="03q7prkrj8y3k8jrnnbjrkmlyv72cxfa8l042df4wajhcbpa4g4l"; depends=[limma marray]; };
 RBioinf = derive { name="RBioinf"; version="1.29.0"; sha256="1cyd18lz3h9b20g6s9azzv9rv9bachh3qsczz84y8lj4kay3qssx"; depends=[graph]; };
-RCASPAR = derive { name="RCASPAR"; version="1.15.0"; sha256="16v55gkqg4jaa7wp4g1l536jv74nlcwkir6796zd85byz2c6aaxh"; depends=[]; };
+RCASPAR = derive { name="RCASPAR"; version="1.15.1"; sha256="125vrkz5gicizf0acpv0f0ijiky5my7rpfyim25vihcsz5fkb0w1"; depends=[]; };
 RCyjs = derive { name="RCyjs"; version="1.1.12"; sha256="1gv31yj0ms7llsg2rca96rh77h1qw3hkjbiskzc3zmpycx5m9m8b"; depends=[BiocGenerics BrowserViz graph httpuv igraph jsonlite Rcpp]; };
 RCytoscape = derive { name="RCytoscape"; version="1.19.0"; sha256="0yfmlksi7sz0p9nbgjz2cpqwbwyzzxij3zaqmkp3wqfdk89mxgi7"; depends=[BiocGenerics graph]; };
 RDAVIDWebService = derive { name="RDAVIDWebService"; version="1.7.0"; sha256="07hnj7flfacg9j8c6155nw23zjxcb1v4wj4rkfi8xz5clp80v6xh"; depends=[Category ggplot2 GOstats graph RBGL rJava]; };
@@ -406,22 +410,23 @@ RTCA = derive { name="RTCA"; version="1.21.0"; sha256="1kpfmrjcwmzgih0vib9ckf4c0
 RTCGAToolbox = derive { name="RTCGAToolbox"; version="1.99.4"; sha256="1s78mll5907bpwca0zzhp19p328gwxc88wg98fjk710i0lx67gbi"; depends=[data_table limma RCircos RCurl RJSONIO survival XML]; };
 RTN = derive { name="RTN"; version="1.7.2"; sha256="0k0xwnk0vgbi86435m5rhv2sxdnzwmhgr85zb8dlffr68dqa66ih"; depends=[car data_table ff igraph IRanges limma minet RedeR snow]; };
 RTopper = derive { name="RTopper"; version="1.15.0"; sha256="1bjrrljidnij9zhq6lqsdi6hr35pih2kwwwd5cgmwfff8nfx60kw"; depends=[Biobase limma multtest]; };
-RUVSeq = derive { name="RUVSeq"; version="1.3.0"; sha256="0wi1ydj98l0826sjpm4bfpdklz3735q16vamqzr2b10p3m22xi79"; depends=[EDASeq edgeR MASS]; };
+RUVSeq = derive { name="RUVSeq"; version="1.3.2"; sha256="1fbkiqzwxmwwkznl37ak1fkzms5i49n4hlk9s1c0frbw3cg79nqm"; depends=[Biobase EDASeq edgeR MASS]; };
 RUVcorr = derive { name="RUVcorr"; version="1.1.0"; sha256="1pgsfm17gnqwa9sr19f15h0nx1fhyjj07yhmpwr7s6p3v46qdw33"; depends=[BiocParallel corrplot gridExtra lattice MASS psych reshape2 snowfall]; };
 RUVnormalize = derive { name="RUVnormalize"; version="1.3.0"; sha256="1fqk68rpznz9xc7ricipvrk1anppa33h9m5yv65fjwv4q1d05265"; depends=[Biobase]; };
 RWebServices = derive { name="RWebServices"; version="1.33.1"; sha256="1bxp4zj7r1lrxb7r7l32h6b8hdxb1ryf7dxxj0qhwimh7pmxln31"; depends=[RCurl SJava TypeInfo]; };
 RamiGO = derive { name="RamiGO"; version="1.15.0"; sha256="1q9f2ii5b1xway407gzfpzz6vm6an8p13vmgkw7vb9rldxn85hab"; depends=[graph gsubfn igraph png RCurl RCytoscape]; };
 RankProd = derive { name="RankProd"; version="2.41.0"; sha256="05r8mrgnpfkd7yhcch7nrn9jbapfhvi67h0z9a9nlxlp44mz0qq7"; depends=[]; };
+RareVariantVis = derive { name="RareVariantVis"; version="1.0.0"; sha256="09hww69169c225dmi3rmjhv5j2bxq1c773s1q7048rysgv0har5y"; depends=[BiocGenerics GenomeInfoDb GenomicRanges googleVis IRanges S4Vectors SummarizedExperiment VariantAnnotation]; };
 Rariant = derive { name="Rariant"; version="1.5.0"; sha256="1xwy2xrdk1m1mscnql8cp3az1jx639a9w4mb8bz7jf62z4z4npsi"; depends=[dplyr exomeCopy GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges reshape2 Rsamtools S4Vectors shiny SomaticSignatures VariantAnnotation VGAM]; };
 RbcBook1 = derive { name="RbcBook1"; version="1.37.0"; sha256="03q82zjd725w585rgdn9mbx7ddsv1kdxylsndh26csz573j2myhh"; depends=[Biobase graph rpart]; };
 Rbowtie = derive { name="Rbowtie"; version="1.9.0"; sha256="02wc0pzw9vm1mc7y84ic79jjdi1mh77v8h4gk2pl117pdkgg7nl7"; depends=[]; };
 Rcade = derive { name="Rcade"; version="1.11.0"; sha256="0dqhir9nkkhga3zll4jv9nc4k2kaggxkks2whfw581k9akj1v7x1"; depends=[baySeq GenomicRanges plotrix rgl Rsamtools S4Vectors]; };
-Rchemcpp = derive { name="Rchemcpp"; version="2.7.0"; sha256="0px77l9h4f0kximv7almkyx9lfc67cdvms25mfry5hyv2v2d3qb8"; depends=[ChemmineR Rcpp]; };
+Rchemcpp = derive { name="Rchemcpp"; version="2.7.1"; sha256="11kj3x6vlwns6wx6sr4iwhh2fz2ab6205cj48gayc5753lhqi44m"; depends=[ChemmineR Rcpp]; };
 RchyOptimyx = derive { name="RchyOptimyx"; version="2.9.0"; sha256="1l84zzd4xpz409gl3d3j5ssddgx3i6ik5hqsdggyvnvf1nb2yavn"; depends=[flowType graph Rgraphviz sfsmisc]; };
 Rcpi = derive { name="Rcpi"; version="1.5.0"; sha256="1ap4i41iy9r6xl0dhlry6yz28g5blb057vvddx6ysphaq9gwx6rp"; depends=[Biostrings ChemmineR doParallel fmcsR foreach GOSemSim rcdk RCurl rjson]; };
 Rdisop = derive { name="Rdisop"; version="1.29.0"; sha256="0j40i96k6q94c3238gl3z9kp9dxv00133m9s4zx28z17ayz00h69"; depends=[Rcpp RcppClassic]; };
 ReQON = derive { name="ReQON"; version="1.15.1"; sha256="147fywvb9f9gjg3ij3sh753fs6mkr9b3f1c9j4gws1hmc6ryyn3m"; depends=[rJava Rsamtools seqbias]; };
-ReactomePA = derive { name="ReactomePA"; version="1.13.2"; sha256="0wll3hgf161jyj2pzbybncvikw6idph672s3n048a1fa7nn8abyg"; depends=[AnnotationDbi DOSE graphite igraph]; };
+ReactomePA = derive { name="ReactomePA"; version="1.13.3"; sha256="0lpabqivq5yssvmz2nac3c169pz6hs7s9n9h4cams9pif364c9jv"; depends=[AnnotationDbi DOSE graphite igraph]; };
 ReadqPCR = derive { name="ReadqPCR"; version="1.15.0"; sha256="063swfh992gmibvr9ffsh65i57fdl651gpc39b2y6k9dp2rx8is7"; depends=[affy Biobase]; };
 RedeR = derive { name="RedeR"; version="1.17.0"; sha256="13fmv76jrzxsa1ykzl85zwj0zb3aycyvc5s3h60vlgawfw66z90h"; depends=[igraph RCurl XML]; };
 RefNet = derive { name="RefNet"; version="1.5.0"; sha256="0dzkvrpphbajpcwc3gdqi8lmwfg8a3rljhdnwswvbjg2vraj48s2"; depends=[AnnotationHub BiocGenerics IRanges PSICQUIC RCurl shiny]; };
@@ -434,32 +439,32 @@ Ringo = derive { name="Ringo"; version="1.33.0"; sha256="12qh3aayy317pzb137ds9vq
 Risa = derive { name="Risa"; version="1.11.0"; sha256="1rgyh3yv4ii0xw6ycm0g9b0y6c9nqdq4k8lidmifk0gx835lw7vf"; depends=[affy Biobase biocViews Rcpp xcms]; };
 Rmagpie = derive { name="Rmagpie"; version="1.25.0"; sha256="13mb9aaqmwx1ad4mk0fhxqfql8pjpyaiibip7jawiyji7ghp9iw7"; depends=[Biobase e1071 kernlab pamr]; };
 RmiR = derive { name="RmiR"; version="1.25.0"; sha256="1xc19w8la239ia793qpnpx2h0aavwhidrjf4i87jry2j29npjfzz"; depends=[DBI RSVGTipsDevice]; };
-RnBeads = derive { name="RnBeads"; version="1.1.1"; sha256="1cz26pivf2w57ha03c49nsqnvr93s8s4xqdy2ccdc3rgffvv191g"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr RColorBrewer]; };
+RnBeads = derive { name="RnBeads"; version="1.1.3"; sha256="1yd5gmi2vvkqrv384ndsn7qgp8rzjj6d0i4zsgr33avxnah757m2"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr RColorBrewer]; };
 RnaSeqSampleSize = derive { name="RnaSeqSampleSize"; version="1.1.0"; sha256="0q2w1yd5p9k3pls6ki8yci3r2v4rxi3iy4zk5mafmr7ip0q1rwpp"; depends=[biomaRt edgeR heatmap3 KEGGREST matlab Rcpp]; };
 Rnits = derive { name="Rnits"; version="1.3.0"; sha256="0hxll8hlv5nc6vijznhzmvbjh1hxmfy9shm2g8al291yi0gfdmk3"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; };
 Roleswitch = derive { name="Roleswitch"; version="1.7.0"; sha256="01b21yyg0d2v10abcbw08zhswh9nb7wj7s3x5kcaaas7671f06ha"; depends=[Biobase biomaRt Biostrings DBI microRNA plotrix pracma reshape]; };
 Rolexa = derive { name="Rolexa"; version="1.25.0"; sha256="1qrf7byimw9s5jp15zmwqk95x34r3yx2npr46gwf1zih06n7kc05"; depends=[Biostrings IRanges mclust ShortRead]; };
 RpsiXML = derive { name="RpsiXML"; version="2.11.0"; sha256="0rvma7vynfh5sjhqnbpagilq54dh0wrvvb3jzykwmrak0dbyk7zh"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; };
-Rqc = derive { name="Rqc"; version="1.3.0"; sha256="06x637d83qv0g0b833r02andj13ipn7dg9xp3lz1rfv5rc1v9m6v"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings ggplot2 IRanges knitr markdown plyr reshape2 S4Vectors ShortRead]; };
-Rsamtools = derive { name="Rsamtools"; version="1.21.8"; sha256="0hv36vmhv37mvn4mqyydyjm3gsfmnizw37jicpb9m2zgc6zgvzha"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges S4Vectors XVector zlibbioc]; };
-Rsubread = derive { name="Rsubread"; version="1.19.0"; sha256="1vlv6h84bxl8986vqc0j47jgmyx8zn2fawj2w6r6fbblq3n2gnm0"; depends=[]; };
+Rqc = derive { name="Rqc"; version="1.3.1"; sha256="02kc0ki021m4hxhzlmxfrb9p7p2ibdqan5hr9h67vd2dcnp9yaij"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings ggplot2 IRanges knitr markdown plyr reshape2 S4Vectors ShortRead]; };
+Rsamtools = derive { name="Rsamtools"; version="1.21.13"; sha256="0fv0a5f1jb8mj3b2qn6bf9vzzpvn8fgrlhxz492rd3ndvvgnabxc"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges S4Vectors XVector zlibbioc]; };
+Rsubread = derive { name="Rsubread"; version="1.19.2"; sha256="1xcj13mzw7a8q93kimr61kcl2xvr0mdzvrrqi4j3psbcyf5zn86k"; depends=[]; };
 Rtreemix = derive { name="Rtreemix"; version="1.31.0"; sha256="1z08y8qhc3sv4pwvji4pks46hxpcpwb9yx8y0927bc96a8mqgax4"; depends=[Biobase graph Hmisc]; };
-S4Vectors = derive { name="S4Vectors"; version="0.7.5"; sha256="0fayn794gwndk7rnawmks1armc1znfgllnsdk36fa19fg9g3245r"; depends=[BiocGenerics]; };
+S4Vectors = derive { name="S4Vectors"; version="0.7.10"; sha256="15hyi728raya0x0fl0pp58kk6w4chvx7xv2f7kmp1432pkgvif9p"; depends=[BiocGenerics]; };
 SAGx = derive { name="SAGx"; version="1.43.0"; sha256="111pgl7rzmscgadkbivwa736gpyw1z7zkcj648zq3jhqix569dvd"; depends=[Biobase multtest]; };
-SANTA = derive { name="SANTA"; version="2.5.0"; sha256="1xrgjhja7idfby99ln90q1h6qrvsy1zbxksjccrv25qqmgaiw0ql"; depends=[igraph Matrix snow stringr]; };
+SANTA = derive { name="SANTA"; version="2.5.2"; sha256="0y49ly3ll8qhbnd5yv5nfzc0bq2xcp2nwdg26338qmif4xklzs43"; depends=[igraph Matrix snow]; };
 SBMLR = derive { name="SBMLR"; version="1.65.0"; sha256="1nmw5c32ka6l12cid54mc4diahjhmyg6fngsd646v70rbzgffn7q"; depends=[deSolve XML]; };
 SCAN_UPC = derive { name="SCAN.UPC"; version="2.11.0"; sha256="1gwjd78qfaqv6xh4ys6rr29b82wc8qxk7ysfjcl06j6n0qk1v4s6"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; };
 SELEX = derive { name="SELEX"; version="1.1.0"; sha256="13v2aqphpblwslbnm9yk9lfg31vrc3lz9ds4m8j7584iszmlgnar"; depends=[Biostrings rJava]; };
 SEPA = derive { name="SEPA"; version="0.99.0"; sha256="1mc44amd39x1dvl0kamhbsn2cplg7h5j5v5y2lv1gminfl4xs0sw"; depends=[ggplot2 reshape2 segmented shiny topGO]; };
-SGSeq = derive { name="SGSeq"; version="1.3.7"; sha256="0cr9z0yjbn7n3p4442vjsdr6a0g0nsw6cp0mp7g92vna8lhff4n0"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
+SGSeq = derive { name="SGSeq"; version="1.3.12"; sha256="19i39vv0ds79hgjjkp37j49apr1jr5n93zc2dmn1llglyp9qqwyl"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
 SIM = derive { name="SIM"; version="1.39.0"; sha256="1r08h5hkciycv4lh998vm742flim07plysgjvrq9dp4c5q4qrzr5"; depends=[globaltest quantreg quantsmooth]; };
-SIMAT = derive { name="SIMAT"; version="1.1.0"; sha256="1w9pw94p4fiq54vjh132b4j0gj5qq06y0b7crdbhv9ihn6780lpg"; depends=[ggplot2 mzR Rcpp reshape2]; };
+SIMAT = derive { name="SIMAT"; version="1.1.5"; sha256="074r9fyrgkay1xr0i3ps1sn7n24y26w595nssy7bryrvhhd8izbr"; depends=[ggplot2 mzR Rcpp reshape2]; };
 SJava = derive { name="SJava"; version="0.95.1"; sha256="1cl0qybi71srf1ggawxdy128kz8crn8if4yi8c2m6w9ppah9m763"; depends=[]; };
 SLGI = derive { name="SLGI"; version="1.29.0"; sha256="0jhi3nmgnqf8qix90kpz8gqibqvyp02ca07aka7npqls24d3i96f"; depends=[AnnotationDbi Biobase BiocGenerics lattice ScISI]; };
 SLqPCR = derive { name="SLqPCR"; version="1.35.0"; sha256="1p35xgwf3i8ksznz1gi3bddj0816hdljamcb7smdrq0md5fqmpzb"; depends=[]; };
 SMAP = derive { name="SMAP"; version="1.33.0"; sha256="0znl289fclws2vnqgpjnrl8b0s5q4cna3ps3il5783vr64ir88cg"; depends=[]; };
 SNAGEE = derive { name="SNAGEE"; version="1.9.0"; sha256="0sn5b8ah9idbz63y1rjx8brz3h58zvh2sk59l4i48nvrm38g169r"; depends=[]; };
-SNPRelate = derive { name="SNPRelate"; version="1.3.4"; sha256="1m10sa7zlsg8b77xi663jz315fi267g2d59d69a7mzcznxz7xi1z"; depends=[gdsfmt]; };
+SNPRelate = derive { name="SNPRelate"; version="1.3.5"; sha256="0xr839g6a2m5p7fd2dzaz0c263b2cfdpakq5ydk0k1c3xppzly9y"; depends=[gdsfmt]; };
 SNPchip = derive { name="SNPchip"; version="2.15.2"; sha256="1px5ifdsly1z8iwd22vj2xb4pk5jhsa3h2z31scw37b0v4daks50"; depends=[Biobase foreach GenomeInfoDb GenomicRanges IRanges lattice oligoClasses SummarizedExperiment]; };
 SPEM = derive { name="SPEM"; version="1.9.0"; sha256="09klaxlz1ff77jhjsr95g3s4b5m285zf3fl9w4mv5pc8r1viqplf"; depends=[Biobase Rsolnp]; };
 SPIA = derive { name="SPIA"; version="2.21.0"; sha256="0v8m9wfl2kqzzl3k0v7lr7g33ymdnmqi9r2fqyb42mggpq5pwxlm"; depends=[KEGGgraph]; };
@@ -468,15 +473,15 @@ SRAdb = derive { name="SRAdb"; version="1.23.0"; sha256="042y06ds1jdj26jzi51wxb6
 SSPA = derive { name="SSPA"; version="2.9.0"; sha256="1kkvj3s2l6zzvv6pybx38qrnm3i5dxckx2fpc4snlx7km2w175xz"; depends=[lattice limma qvalue]; };
 STAN = derive { name="STAN"; version="1.3.0"; sha256="02qg79aa0j2ns1xswdirgbpwb0dlghd0lbdxgnpmy225wgb7nak6"; depends=[Rsolnp]; };
 STATegRa = derive { name="STATegRa"; version="1.3.1"; sha256="0kfwi5qimg4myx5x0gjwrkhz8cxh2hz1mvxla8yn8v8fkb3ryshj"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; };
-STRINGdb = derive { name="STRINGdb"; version="1.9.0"; sha256="0nsl13gb0kjppd4gnpg35ww1dy0gnql7ki6902pxam6pz2m0sp26"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; };
+STRINGdb = derive { name="STRINGdb"; version="1.9.1"; sha256="0w069dd8h1h80av18lh54xszs94d5nps19fzc225zmbdwqy21vx5"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; };
 SVM2CRM = derive { name="SVM2CRM"; version="1.1.0"; sha256="0k3mg9b8i406ssvkzacz60qk000bnd1d5bmcqzc3yrh3w9qv567q"; depends=[AnnotationDbi GenomicRanges IRanges LiblineaR mclust pls ROCR rtracklayer squash verification zoo]; };
-SamSPECTRAL = derive { name="SamSPECTRAL"; version="1.23.2"; sha256="1bm8b6myyafya99af6w6ayngkm8dl85ldma0lf6v0gysmn9dlqkk"; depends=[]; };
+SamSPECTRAL = derive { name="SamSPECTRAL"; version="1.23.4"; sha256="0fqnqffw6q5sja3jkw6ddrachs075s5s7rnpg9fli9lgax5r4rbp"; depends=[]; };
 ScISI = derive { name="ScISI"; version="1.41.0"; sha256="05snqj8qphcmnkrmv42p6zs92dmi09sd06abn5ll5234my5d0vvn"; depends=[annotate AnnotationDbi apComplex RpsiXML]; };
 SemDist = derive { name="SemDist"; version="1.3.0"; sha256="0dvnp3d2s7bc4jv2vm8jikyac2cd23hx7r480g2lkcaic99wbl0s"; depends=[annotate AnnotationDbi]; };
-SeqArray = derive { name="SeqArray"; version="1.9.3"; sha256="062zl6igsf12k7k9c5j0sya3mq57y0vp1giqcj3czv569ipnc93s"; depends=[Biostrings gdsfmt GenomicRanges IRanges S4Vectors VariantAnnotation]; };
+SeqArray = derive { name="SeqArray"; version="1.9.7"; sha256="0gpn5dispfd8scqhgxw8pfgrwkz479ly5q8431mifmbkq8zh34pd"; depends=[Biostrings gdsfmt GenomicRanges IRanges S4Vectors VariantAnnotation]; };
 SeqGSEA = derive { name="SeqGSEA"; version="1.9.0"; sha256="0znabm84qgzf9m4dk64jppn3s5vzz1sjvrdlr7s6jls8jwi8kqqi"; depends=[Biobase biomaRt DESeq doParallel]; };
-SeqVarTools = derive { name="SeqVarTools"; version="1.7.0"; sha256="0nwhz7fpfrbbvcl08g8wflhz8iv660grfq2dq0l5bgqv04x3a19h"; depends=[gdsfmt GenomicRanges GWASExactHW IRanges S4Vectors SeqArray VariantAnnotation]; };
-ShortRead = derive { name="ShortRead"; version="1.27.4"; sha256="1wkpl67rbiwdy5s4hr84bgc4qj4i94d3kkgg527c2xdg7pwd2vx9"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rsamtools S4Vectors XVector zlibbioc]; };
+SeqVarTools = derive { name="SeqVarTools"; version="1.7.1"; sha256="04xfph2iphpmlqws5xmibq1jdkclbal2nrf18w7sblqcv67cff7x"; depends=[gdsfmt GenomicRanges GWASExactHW IRanges S4Vectors SeqArray VariantAnnotation]; };
+ShortRead = derive { name="ShortRead"; version="1.27.5"; sha256="0r9gmbg9fd3n6v8c0l1mjkk9x1v6qrisamm5a1nasqbg3wmhmz5k"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rsamtools S4Vectors XVector zlibbioc]; };
 SigCheck = derive { name="SigCheck"; version="2.1.0"; sha256="012n75gmsifvymbk20pjdv9g8mzmm9bzk98l089ymy5hbddja86b"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; };
 SigFuge = derive { name="SigFuge"; version="1.7.0"; sha256="1b966n3rl4xs3q1vjgkxxfravqr02rdgwyzvr469y757qdqi1day"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; };
 SimBindProfiles = derive { name="SimBindProfiles"; version="1.7.0"; sha256="04m7h5zil05sg9yfgjjzm1p65302fp50vxf8y1jafp1nwqialxwh"; depends=[Biobase limma mclust Ringo]; };
@@ -487,7 +492,7 @@ SpeCond = derive { name="SpeCond"; version="1.23.0"; sha256="0nbbqazxql9mc5idvrc
 SplicingGraphs = derive { name="SplicingGraphs"; version="1.9.1"; sha256="1s3kvaxrrvfndp4imavj0r9zw0rg37cn9xwxhi5zpfd7a784z1xk"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; };
 Starr = derive { name="Starr"; version="1.25.0"; sha256="0553rfkhzzlszhmfcrl7r7n2jmvvz9rqj91x131x3jsmb1qavw57"; depends=[affxparser affy MASS pspline Ringo zlibbioc]; };
 Streamer = derive { name="Streamer"; version="1.15.2"; sha256="0mah1sq797ihy82mvb6vyppggap3nxcpwbnswxf1rw0jxhnjnmll"; depends=[BiocGenerics graph RBGL]; };
-SummarizedExperiment = derive { name="SummarizedExperiment"; version="0.1.5"; sha256="1n29sssjkhaj2rs9qd9g8mq25a63rs04f1kn9hjy67f10i5h1l1n"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
+SummarizedExperiment = derive { name="SummarizedExperiment"; version="0.3.2"; sha256="0k7dmly8g1qhpqx4qv376ixkwvx073ydc5xqi29s81mwp5fq08zi"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
 Sushi = derive { name="Sushi"; version="1.6.1"; sha256="0g1fk0xrn584l49r73crj0bc5z2y6rdzyf54d221r7k119njp3dw"; depends=[biomaRt zoo]; };
 SwimR = derive { name="SwimR"; version="1.7.0"; sha256="07kh24m9d1q3swj3srjybj6lq68s89750fbvlg449px4aq23yrq0"; depends=[gplots heatmap_plus R2HTML signal]; };
 TCC = derive { name="TCC"; version="1.9.0"; sha256="1bihqfvrq3sjs38m2a60swxqcxmgabb1lmsnfrb669imiqc7ramj"; depends=[baySeq DESeq DESeq2 edgeR ROC samr]; };
@@ -507,13 +512,14 @@ TransView = derive { name="TransView"; version="1.13.0"; sha256="14fanxl8lqam349
 TurboNorm = derive { name="TurboNorm"; version="1.17.0"; sha256="1f2frh2xnngzpl2q2jxiild98qgnd60c0pz31aisk013nj3jdadq"; depends=[affy convert lattice limma marray]; };
 TypeInfo = derive { name="TypeInfo"; version="1.35.0"; sha256="0rxwfaqg8sg70hiq8frm4pjhs8a17n0rgjra346bsi8cm4a2vyhz"; depends=[]; };
 UNDO = derive { name="UNDO"; version="1.11.0"; sha256="173cdpp0gipwplxdf7ynxqnv8fqfkbyx7xmr5cx396zi8gpq3am4"; depends=[Biobase BiocGenerics boot MASS nnls]; };
-UniProt_ws = derive { name="UniProt.ws"; version="2.9.1"; sha256="0w5rgr5a5mmhrgvgdyxvglflz1z3yl8i8kfrhcavl1apkqv2v0p0"; depends=[AnnotationDbi BiocGenerics RCurl RSQLite]; };
-VanillaICE = derive { name="VanillaICE"; version="1.31.2"; sha256="0szd11zz5nvax9awwh1v3qdg01x7s87a2smacz96fya9acjiclhb"; depends=[Biobase BiocGenerics crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment]; };
-VariantAnnotation = derive { name="VariantAnnotation"; version="1.15.13"; sha256="1fp09wnvwh981bwysfnvak1qz0ybidz6qim73w1wg32dn2d42p5a"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; };
-VariantFiltering = derive { name="VariantFiltering"; version="1.5.14"; sha256="0r972lvyjcq0wxxnpgd9ym0b7kfjl8nyjkkci2z5gnilpq9ds5fw"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges graph Gviz IRanges RBGL Rsamtools RSQLite S4Vectors shiny VariantAnnotation XVector]; };
+UniProt_ws = derive { name="UniProt.ws"; version="2.9.2"; sha256="0pby1c7y8fxkpdd2knbv8gbxs78ry1dz8q9zqw6bakp831v5kbgw"; depends=[AnnotationDbi BiocGenerics RCurl RSQLite]; };
+VanillaICE = derive { name="VanillaICE"; version="1.31.3"; sha256="0niimjngjx8wq2fylzjdijb2za4w4ia53aqkdnjwjfl78rg2hwch"; depends=[Biobase BiocGenerics crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment]; };
+VariantAnnotation = derive { name="VariantAnnotation"; version="1.15.19"; sha256="1hqpjwrnyl5hp8vwl68v2cnf868vjf7k0vckjczdcc66wp3g9r70"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; };
+VariantFiltering = derive { name="VariantFiltering"; version="1.5.15"; sha256="1dawzsv358h3p5x7kcml17snpbypgwjl5b0aam2wrsb7qp80sqh7"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges graph Gviz IRanges RBGL Rsamtools RSQLite S4Vectors shiny VariantAnnotation XVector]; };
 VariantTools = derive { name="VariantTools"; version="1.11.0"; sha256="1yyx9l6q3v4igm2ppnrsj9c7p4p0zpkqwjyf9d7b7rqvrk9yjyrv"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges gmapR IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; };
 Vega = derive { name="Vega"; version="1.17.0"; sha256="1c39112czlw9hgh9gmkwxhhz9kwki48k8lsfmy3hkzxqpxx61h01"; depends=[]; };
 VegaMC = derive { name="VegaMC"; version="3.7.0"; sha256="046wly5sn4vwk3h4bcick8q5dpjrfjq393rqjl8y4v24iqynlyqd"; depends=[Biobase biomaRt genoset]; };
+XBSeq = derive { name="XBSeq"; version="0.99.6"; sha256="1j8hwy2wi4vmc1nnc5xij578w445vqj0v6ngz06rlbdi5kb9k7ls"; depends=[Biobase BiocGenerics DESeq2 ggplot2 locfit matrixStats pracma]; };
 XDE = derive { name="XDE"; version="2.15.0"; sha256="17i8zxb6q4wpsa8lymcnilmr39ip1a54h6rqyl3m7qa8xwb0gv50"; depends=[Biobase BiocGenerics genefilter gtools MergeMaid mvtnorm]; };
 XVector = derive { name="XVector"; version="0.9.1"; sha256="0l5l45i7sx1j51s3wkab207qwbk77i8iazd26isf0yp3rsb84a4c"; depends=[BiocGenerics IRanges S4Vectors]; };
 a4 = derive { name="a4"; version="1.17.0"; sha256="0pn0gm4xkngz72i92h58d0xbpcx04938x4vm0mqsilrjapchripj"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; };
@@ -525,7 +531,7 @@ a4Reporting = derive { name="a4Reporting"; version="1.17.0"; sha256="1fpdkw048gv
 aCGH = derive { name="aCGH"; version="1.47.0"; sha256="095arlryay4gdr6kva7vf9lcby60pyx5bs4vcx586zgwskzpb2ln"; depends=[Biobase cluster multtest survival]; };
 acde = derive { name="acde"; version="0.99.5"; sha256="1bbsfr7a2sivb6dpn06hwj0i95wdlfxzba4a36pakx7nzn6nv76p"; depends=[boot]; };
 adSplit = derive { name="adSplit"; version="1.39.0"; sha256="1jprbqwhksyp9jf05r5dbfzgn30xm16shqsf8yi9b3nr7z2swvwm"; depends=[AnnotationDbi Biobase cluster multtest]; };
-affxparser = derive { name="affxparser"; version="1.41.4"; sha256="11l1d74qvsaknnfa4wwp1jb0v17hwbz5yc8fnvg5qqmdwnblrdjc"; depends=[]; };
+affxparser = derive { name="affxparser"; version="1.41.5"; sha256="0naiv8z07zr1xjnmimx17awnsb9dryiz4w9jx17whrjwdpddx1p5"; depends=[]; };
 affy = derive { name="affy"; version="1.47.1"; sha256="1c9ggyqhj65mj0nq9xsqfmzp4a5705qj67swjpk5bmqajxr390a3"; depends=[affyio Biobase BiocGenerics BiocInstaller preprocessCore zlibbioc]; };
 affyContam = derive { name="affyContam"; version="1.27.0"; sha256="1hd9kchhdjcnkxlf6kcc59jb5a9v67671shvzprraa1lg4800j5x"; depends=[affy Biobase]; };
 affyILM = derive { name="affyILM"; version="1.21.0"; sha256="1gvagg83p4vxp6q72s7camcg5lhxdfy7rmm3a2p2n29267xvcz5x"; depends=[affxparser affy Biobase gcrma]; };
@@ -546,26 +552,26 @@ annmap = derive { name="annmap"; version="1.11.0"; sha256="0s0ifbwra3zczw9h0nqcs
 annotate = derive { name="annotate"; version="1.47.0"; sha256="06nrzkl9g26rrnqvakwkn2yinvgka02a5iivhi9kgjk4g5plcmkw"; depends=[AnnotationDbi Biobase BiocGenerics DBI XML xtable]; };
 annotationTools = derive { name="annotationTools"; version="1.43.0"; sha256="1dqs8f4p1ks03q0lfwm3hs116ahks39hk17knkqs492zcqr83qay"; depends=[Biobase]; };
 anota = derive { name="anota"; version="1.17.0"; sha256="0grdmpdg03wqjs6rk558nvl8vvdi6my0jv06f3h364pk44hrijdn"; depends=[multtest qvalue]; };
-antiProfiles = derive { name="antiProfiles"; version="1.9.0"; sha256="0jyrwk7h3qrka950yqhblavf40yjbyarimrf8d7zbq1kd3licfbf"; depends=[matrixStats]; };
+antiProfiles = derive { name="antiProfiles"; version="1.9.1"; sha256="07gzl7wsvv3x7in7n1fwq4cm8bqhlrxwq6ra1k2556z9z8ad7y33"; depends=[locfit matrixStats]; };
 apComplex = derive { name="apComplex"; version="2.35.0"; sha256="0h9vvz62fbnqqw2qz4kpcr0s40yj7swy0plkdaq51q04p41z016r"; depends=[graph RBGL Rgraphviz]; };
-aroma_light = derive { name="aroma.light"; version="2.5.1"; sha256="0d48c2860gg2qpmqx5i0lzh2n8chb4jdq78f169vlynx49ix3kq7"; depends=[matrixStats R_methodsS3 R_oo R_utils]; };
+aroma_light = derive { name="aroma.light"; version="2.5.2"; sha256="1dw3b06fq0da6ji13x42iqwwidx2ajg8q75svsd5y98dly8jniib"; depends=[matrixStats R_methodsS3 R_oo R_utils]; };
 arrayMvout = derive { name="arrayMvout"; version="1.27.0"; sha256="1czqsd34d8rb9h4vwp2m6ficvi41gbdgrilgbl0fb01vlp79qq0k"; depends=[affy affyContam Biobase lumi mdqc parody simpleaffy]; };
 arrayQuality = derive { name="arrayQuality"; version="1.47.0"; sha256="0f3wvvb1a78hzlxansjfh065vbyh2qk9vz3jna6294zc7k4r7wfb"; depends=[gridBase hexbin limma marray RColorBrewer]; };
 arrayQualityMetrics = derive { name="arrayQualityMetrics"; version="3.25.0"; sha256="0h90j2fj87bvwj1cjy7qq5mnfy4jabqa8ijq23gp3p51qwyh84zr"; depends=[affy affyPLM beadarray Biobase Cairo genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG vsn XML]; };
 attract = derive { name="attract"; version="1.21.0"; sha256="0kl2kgxvm9ix2lwcwilmzcjhxbhx99afn6g6608aq26649q3k2sz"; depends=[AnnotationDbi Biobase cluster GOstats limma]; };
-ballgown = derive { name="ballgown"; version="2.1.0"; sha256="168bpcawi5g6vhwg16585qd6g1pp3kd4baldcd1yk9bkccxaj8xx"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; };
+ballgown = derive { name="ballgown"; version="2.1.1"; sha256="0nb9xhcvdl9zpfix3rsr0dlm7f7smiabbzfiw50psw9mg8wki0dn"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; };
 bamsignals = derive { name="bamsignals"; version="1.1.0"; sha256="1ga4swlqmjg4xnmkk16h0qjh3dpz7n0pra2233j4cz78cn8zvj3p"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; };
 baySeq = derive { name="baySeq"; version="2.3.0"; sha256="1l0is5dcwip7babll7mpsahhj69v1j1d7caq64ak6qhb477pmak5"; depends=[abind GenomicRanges perm]; };
-beadarray = derive { name="beadarray"; version="2.19.0"; sha256="0izc7i65j60k20a86hblkfq6vq2n855vi8qrn42p3gx27s28a20v"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 illuminaio IRanges limma reshape2]; };
+beadarray = derive { name="beadarray"; version="2.19.1"; sha256="0al50lli8ckbr8cs38r6xr5v4rldf6xy7iwl5hbs5avxnibk3s8k"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 illuminaio IRanges limma reshape2]; };
 beadarraySNP = derive { name="beadarraySNP"; version="1.35.0"; sha256="0g6ba4iynfgrm647d5vx6wk9pijg62bdvvz1afz9dimqvjlwybhc"; depends=[Biobase quantsmooth]; };
 betr = derive { name="betr"; version="1.25.0"; sha256="0jd7r069jlfp5fj51xw8k6jpxq5kb364xi9331l06hwijp3msrk6"; depends=[Biobase limma mvtnorm]; };
 bgafun = derive { name="bgafun"; version="1.31.0"; sha256="18wk42h1i06j3swlsac9vnkc7riimk7qap59lygji1p3zvy1nkpx"; depends=[ade4 made4 seqinr]; };
 bgx = derive { name="bgx"; version="1.35.0"; sha256="1cawfanrxq82b24ny050hv4p607k2zhfxllgl8j1j9qm9n4yk4yk"; depends=[affy Biobase gcrma]; };
 bigmemoryExtras = derive { name="bigmemoryExtras"; version="1.13.2"; sha256="0qmrpm4bir0si5xd5v8ih6wnwfprwp4q9hcxbylf1721v9m9wpwv"; depends=[bigmemory Biobase]; };
 bioDist = derive { name="bioDist"; version="1.41.0"; sha256="14a18ky9x36fa8yx3kry23c0vfazxy0lg0j2zkdnr1irngc9wnw5"; depends=[Biobase KernSmooth]; };
-bioassayR = derive { name="bioassayR"; version="1.7.3"; sha256="1m6b2l0y7acpwpb6jjmmhsxdjrrhqnas7c8a2xq50x88l9ks4v68"; depends=[BiocGenerics DBI Matrix rjson RSQLite XML]; };
+bioassayR = derive { name="bioassayR"; version="1.7.7"; sha256="1pflygamq0l0pdps4ay3rl4f8c1njrb55lnl0p2z7mgpj6dbgvf8"; depends=[BiocGenerics DBI Matrix rjson RSQLite XML]; };
 biocGraph = derive { name="biocGraph"; version="1.31.0"; sha256="069n4867pkygrsgfjp6arnnmcvlij03r1a2kbs9jgnpx4knck09i"; depends=[BiocGenerics geneplotter graph Rgraphviz]; };
-biocViews = derive { name="biocViews"; version="1.37.7"; sha256="0d7gwbb9x23gr2h0pl72hzsm2jfj7s3dzbl66gmk6dc0bs7ibw42"; depends=[Biobase graph knitr RBGL RCurl RUnit XML]; };
+biocViews = derive { name="biocViews"; version="1.37.10"; sha256="1wa9avvgmfvl44l7gfsg7ivbsylixh413ckc5p8xryax6scb2kzy"; depends=[Biobase graph knitr RBGL RCurl RUnit XML]; };
 biomaRt = derive { name="biomaRt"; version="2.25.1"; sha256="1dk55qrfxyzgnjk90qy6mfgw04fpwfy4jkhwbmnpnky826mg7bwb"; depends=[AnnotationDbi RCurl XML]; };
 biomvRCNS = derive { name="biomvRCNS"; version="1.9.1"; sha256="0ni7ncip0vx1ipyrgd2kkasw6cmxbr2ha2dsqb0bizyyf2981rnh"; depends=[GenomicRanges Gviz IRanges mvtnorm]; };
 biosvd = derive { name="biosvd"; version="2.5.0"; sha256="0xnc3vpbj5p14w2fwql8vpz9lyvivq3kjmwsr62abn418ampa941"; depends=[Biobase BiocGenerics NMF]; };
@@ -574,7 +580,7 @@ birta = derive { name="birta"; version="1.13.0"; sha256="01lrwg4naks85gcrlg3sk3p
 birte = derive { name="birte"; version="1.3.0"; sha256="0azkl9x2hk826sdpw96ls868jf83yf1v79inyjg7xsilal2slqgf"; depends=[Biobase limma MASS nem Rcpp RcppArmadillo ridge]; };
 blima = derive { name="blima"; version="1.3.0"; sha256="1i7njg1lw76717irmfbpy9pmv8hy7nzyini2wm6625cafizp5xq8"; depends=[beadarray Biobase BiocGenerics]; };
 bridge = derive { name="bridge"; version="1.33.0"; sha256="06iz67amv80az14s8yim25jfsgbxhxbfifbqazsc78ip9gd7lfyv"; depends=[rama]; };
-bsseq = derive { name="bsseq"; version="1.5.3"; sha256="1rdblq7xh5hbghr66iamnpc24yiqrnqfn7pr835m6wag6waxdc3i"; depends=[Biobase BiocGenerics data_table GenomeInfoDb GenomicRanges gtools IRanges locfit matrixStats S4Vectors scales SummarizedExperiment]; };
+bsseq = derive { name="bsseq"; version="1.5.4"; sha256="1hr9h4h099506id4xvh6xm9x40dv5hsiyz8rzj4dxxkq7095h9d1"; depends=[Biobase BiocGenerics data_table GenomeInfoDb GenomicRanges gtools IRanges locfit matrixStats S4Vectors scales SummarizedExperiment]; };
 bumphunter = derive { name="bumphunter"; version="1.9.1"; sha256="0phq9dhrj8fa253a64vwfp75j85vp9142g5gmfy1g1n861xy8r26"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; };
 caOmicsV = derive { name="caOmicsV"; version="0.99.2"; sha256="0y96f64m0liv53vbby866v1ga5nml1506pp6ff4ax7dbg0niiwwn"; depends=[bc3net igraph]; };
 canceR = derive { name="canceR"; version="1.1.2"; sha256="07wikalgmf3vw2dzmri1ia80hfman53mynsk40y549qn8hjija1k"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase GSEAlm phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; };
@@ -599,19 +605,19 @@ cleaver = derive { name="cleaver"; version="1.7.0"; sha256="14vbdagy61imql6z2qaz
 clippda = derive { name="clippda"; version="1.19.0"; sha256="1gd5b2n2qa9bv1n93vcdz8lg8kmn1lv923i3gzq8pcy7fbz7m5cs"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; };
 clipper = derive { name="clipper"; version="1.9.0"; sha256="0py5hdbf8wypw5r9r2d7b3239b83lyrybcvksrmiklv7snw9c2qx"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; };
 clonotypeR = derive { name="clonotypeR"; version="1.7.0"; sha256="1pwwjgln7r7035fdqqfb69fgql91cxfablbwid2m5xkdrwzpb57s"; depends=[]; };
-clst = derive { name="clst"; version="1.17.0"; sha256="0wsn5ins5hz2xq866wh71b7jk4six5cy3hq5ff2a04n20asaiq4i"; depends=[lattice ROC]; };
-clstutils = derive { name="clstutils"; version="1.17.0"; sha256="0bnqmmi5j0iy1zjxlj4b621d9llww4b2wvrq1vcqjm5wfrn7a372"; depends=[ape clst lattice rjson RSQLite]; };
-clusterProfiler = derive { name="clusterProfiler"; version="2.3.3"; sha256="1hsqfl6dp5671y3sr0qxr01fra1b6y44a7jnc94mqdfabsm9a9vx"; depends=[AnnotationDbi DOSE ggplot2 GOSemSim KEGGREST magrittr plyr qvalue topGO]; };
+clst = derive { name="clst"; version="1.17.1"; sha256="08gqxcjchzywvc67nfjmr2i1xxm71i1j00qxdq3zs6p9y4n65qa0"; depends=[lattice ROC]; };
+clstutils = derive { name="clstutils"; version="1.17.1"; sha256="04gwj8mlbqd5l2nas146vk0vzad0z1y4225g935h9baspcmdh3f8"; depends=[ape clst lattice rjson RSQLite]; };
+clusterProfiler = derive { name="clusterProfiler"; version="2.3.6"; sha256="1hfknmad6wix5ciwcfjn80s0y78966gfkifhxa6wxpkddmdhklqw"; depends=[AnnotationDbi DOSE ggplot2 GOSemSim KEGGREST magrittr plyr qvalue topGO]; };
 clusterStab = derive { name="clusterStab"; version="1.41.0"; sha256="0sgj2k70fc3r3s19vxcx95z8s3a42yshl78swxp0qp55kidbhvdp"; depends=[Biobase]; };
 cn_farms = derive { name="cn.farms"; version="1.17.0"; sha256="09xasmanimx3mzis786iwy2nvxqa5rzvrvrz1hpsiyh5y77yrbnb"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; };
-cn_mops = derive { name="cn.mops"; version="1.15.0"; sha256="11yds13b65hnhaiqckphcl7hn9z85qv7jpwrp4knscl9y8bs3s78"; depends=[Biobase BiocGenerics GenomicRanges IRanges Rsamtools]; };
+cn_mops = derive { name="cn.mops"; version="1.15.1"; sha256="03gr4i1vpyg6h3yyqrdjq1z1dzq9jzdazcrv9045v652qf4jbshr"; depends=[Biobase BiocGenerics GenomicRanges IRanges Rsamtools]; };
 cnvGSA = derive { name="cnvGSA"; version="1.13.0"; sha256="1sswh1xwimki8ys08l2h95ajpnm5gr0bscvwilhjw4g2a0y7nibr"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; };
 coGPS = derive { name="coGPS"; version="1.13.0"; sha256="160cf9ijn5crvhwbqldix1n36jrmn51085sr4whgm765si57wwb4"; depends=[]; };
 coMET = derive { name="coMET"; version="1.1.0"; sha256="01baf156p0ldqhczrin2lsf4jir7158b0db5732jddnl5ayghsi3"; depends=[biomaRt colortools GenomicRanges ggbio ggplot2 gridExtra Gviz hash IRanges psych rtracklayer S4Vectors trackViewer]; };
 coRNAi = derive { name="coRNAi"; version="1.19.0"; sha256="1vidwyq8rnkbi0pfbh3mk8m3qj8acwqn7q6jm35gahy4y3p0nq7x"; depends=[cellHTS2 gplots lattice limma locfit MASS]; };
 cobindR = derive { name="cobindR"; version="1.7.1"; sha256="0mya51pynfdxfap3paylinqg10fpir7flsz1bng0sk34y15jnxbz"; depends=[BiocGenerics biomaRt Biostrings BSgenome gmp gplots IRanges mclust rtfbs seqinr yaml]; };
-codelink = derive { name="codelink"; version="1.37.0"; sha256="10s8x9j034j9vl7hv9w8ws4kihmw632b177ckiq0gsy2k63iampk"; depends=[annotate Biobase BiocGenerics limma]; };
-cogena = derive { name="cogena"; version="1.1.2"; sha256="0qjcjh65hbllmqzjnmr4vwgn7scs6lfb7g4pxka4w3r2ca444a0v"; depends=[amap Biobase biwt class cluster corrplot devtools doParallel fastcluster foreach ggplot2 gplots kohonen mclust reshape2]; };
+codelink = derive { name="codelink"; version="1.37.4"; sha256="0rn2cbjgb7f9yypdrvk5ahgpghd3pn45pb183rs9fdywivys9a0v"; depends=[annotate Biobase BiocGenerics limma]; };
+cogena = derive { name="cogena"; version="1.1.3"; sha256="074knrfvnhf4fp98dypwzjsp9z15lj7xlgm1wfmnijcwrwf5566p"; depends=[amap Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots igraph kohonen mclust reshape2 STRINGdb]; };
 compEpiTools = derive { name="compEpiTools"; version="1.3.4"; sha256="0y12sn2dh0x2y7nghkh6dm98b4ilg41694shw3m0fcgaz22c30kp"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; };
 compcodeR = derive { name="compcodeR"; version="1.5.3"; sha256="0208sxff40mjizr47zf6yf87irnnjm0gizdk9h5frbizdxl2i9nn"; depends=[caTools edgeR gdata ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS modeest ROCR sm stringr vioplot]; };
 conumee = derive { name="conumee"; version="1.1.0"; sha256="1sxl5m7yfqbzg76n06y1jcv0v75y7wf3ad66zw8v004nz84diaix"; depends=[DNAcopy GenomeInfoDb GenomicRanges IRanges minfi rtracklayer]; };
@@ -622,7 +628,7 @@ cosmiq = derive { name="cosmiq"; version="1.3.0"; sha256="1868sxwlmaqas3w3nrw4bv
 cpvSNP = derive { name="cpvSNP"; version="1.1.0"; sha256="066y409zfz0bway990ygck5lf0vzl6whh212v4rpis1l9bzfv434"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; };
 cqn = derive { name="cqn"; version="1.15.1"; sha256="1g1ip7lxs82qq0qbhnx90hxmjiypc76p1sgx7yvj5nmp6wp1m5xy"; depends=[mclust nor1mix preprocessCore quantreg]; };
 crlmm = derive { name="crlmm"; version="1.27.0"; sha256="16i3ijqhwp6c2dshk8r7idrjwga3sm1qcafqz9gl4q6b04s5jvym"; depends=[affyio Biobase BiocGenerics ellipse ff foreach illuminaio lattice matrixStats mvtnorm oligoClasses preprocessCore RcppEigen SNPchip VGAM]; };
-csaw = derive { name="csaw"; version="1.3.7"; sha256="0bislfi25l4m5rviccp8nx5ilw9804h4dfxc928a8mxhc8piqgzx"; depends=[AnnotationDbi edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges limma Rsamtools S4Vectors SummarizedExperiment]; };
+csaw = derive { name="csaw"; version="1.3.9"; sha256="10ad0nflzy5ygq7rcn5swpdhxd4rr4y65759pvhji17scsinhswp"; depends=[AnnotationDbi edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges limma Rsamtools S4Vectors SummarizedExperiment]; };
 ctc = derive { name="ctc"; version="1.43.0"; sha256="139rxdvyvv3wvlc5q3581y5hkjkd5smxvb606mlxjb8lww4qmcj8"; depends=[amap]; };
 cummeRbund = derive { name="cummeRbund"; version="2.11.1"; sha256="0nd1a9wi2qvvdhfvkb18ql82bfzhz6fivc7wdfv90mibrd7ypb2a"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer]; };
 customProDB = derive { name="customProDB"; version="1.9.4"; sha256="0ws620i6s9p477zfns0m6qpzzhrsivjziv2gv3gmy19dhfh0ln08"; depends=[AnnotationDbi biomaRt Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer stringr VariantAnnotation]; };
@@ -630,35 +636,37 @@ cycle = derive { name="cycle"; version="1.23.0"; sha256="1fpn41xgnvn77m2bga3j70h
 cytofkit = derive { name="cytofkit"; version="1.1.1"; sha256="0kzy6ylijyypsii5vl77r0wl2s2rhnvj98qbiy96ziijfjmjmfcc"; depends=[Biobase e1071 flowCore ggplot2 gplots reshape Rtsne vegan]; };
 daMA = derive { name="daMA"; version="1.41.0"; sha256="0jfp6kxzys0w8vv8fr5shki79rimiagylvkz5avg2idvzgs2q1w8"; depends=[MASS]; };
 dagLogo = derive { name="dagLogo"; version="1.7.1"; sha256="1mqxhdwiaq9szg5krhxndr1wgl77cgxxxq271a5n53srkbfh77s4"; depends=[biomaRt Biostrings grImport motifStack pheatmap]; };
-ddCt = derive { name="ddCt"; version="1.24.1"; sha256="0am65cwrhy0xijxfg1709rwvdjammdfz4y2g7cyd83d7chfaznxa"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; };
+ddCt = derive { name="ddCt"; version="1.24.2"; sha256="06cg2q8sg2685z7salbfyq2xb1mya3avgjrdmi6nw88rr8pxz0w7"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; };
 ddgraph = derive { name="ddgraph"; version="1.13.0"; sha256="1krdxmcjrhbw5gdrg68m41m1mhb5q0ijmqhxbvvxzqm3wyh8v2g1"; depends=[bnlearn graph gtools MASS pcalg plotrix RColorBrewer Rcpp]; };
 deepSNV = derive { name="deepSNV"; version="1.15.3"; sha256="1sg4swpna7h4lmpzmqg1x4lqmyx1xq0fckz43gpvpk5s8li6j62h"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; };
 deltaGseg = derive { name="deltaGseg"; version="1.9.0"; sha256="0y8fw4gxmhsr5xrbg1k0s8207mhj6dmlbbmny2dn66c1qlg2bh24"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; };
-derfinder = derive { name="derfinder"; version="1.3.2"; sha256="11syvmgfw7sdl9p5sl0b0q9kkk37xdqil8qz70l0p9m9j1z385sq"; depends=[AnnotationDbi BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; };
-derfinderHelper = derive { name="derfinderHelper"; version="1.3.0"; sha256="0hgj1adh82w2b1gdw6zh8hxij4n5a0bsild66cpb0i8cny8a3ayj"; depends=[IRanges Matrix S4Vectors]; };
-derfinderPlot = derive { name="derfinderPlot"; version="1.3.2"; sha256="1fhgq1nr4qxv6l1qf1g92gw6c9h47i92ybxcr9m88kqp53y6flj4"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 scales]; };
+derfinder = derive { name="derfinder"; version="1.3.3"; sha256="11npavkr27f3c48bp40vgn9klgmpqs2w17gl96qn5g1y2gyvrhk5"; depends=[AnnotationDbi BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; };
+derfinderHelper = derive { name="derfinderHelper"; version="1.3.1"; sha256="03kijh42x1v4ix4gxs1729rifwckaz9npcrd9b3j6xsizx97b4cr"; depends=[IRanges Matrix S4Vectors]; };
+derfinderPlot = derive { name="derfinderPlot"; version="1.3.4"; sha256="1f7x609sknmbn8gsxq75073vfr0qd0k9j7gfi0fxvgnm5f4lkizx"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 scales]; };
 dexus = derive { name="dexus"; version="1.9.0"; sha256="1xnjs6gmzkdj1snwakq73bz8ypnxzzxh8ki9wv0ljfbfwv1j7z53"; depends=[BiocGenerics]; };
 diffGeneAnalysis = derive { name="diffGeneAnalysis"; version="1.51.0"; sha256="1k5as63cd87nnigc0yzaxvhskpnbr7l1ym2bqc57zsm3bwh8xxwb"; depends=[minpack_lm]; };
-diffHic = derive { name="diffHic"; version="1.1.7"; sha256="1h6qlvk7bbdfi0lg86kbd4milp3imgkq79w73gf1am4knpplks1g"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges IRanges limma locfit rhdf5 Rsamtools S4Vectors]; };
+diffHic = derive { name="diffHic"; version="1.1.9"; sha256="0azagkb87v2lxmb5bvjqc9bz8pqnn1a9j3p5r4v8izpqwq23hf75"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges IRanges limma locfit rhdf5 Rsamtools S4Vectors]; };
 diggit = derive { name="diggit"; version="1.1.1"; sha256="0c3zy1d9bzb6asa4clgq738h7dj6md55gclwa244qyx857b58rqv"; depends=[Biobase ks viper]; };
 dks = derive { name="dks"; version="1.15.0"; sha256="1d66jfca6q8ni5vz5zh7fmxwh3y0yvl2p7gal7w55py6wvyssnl3"; depends=[cubature]; };
 domainsignatures = derive { name="domainsignatures"; version="1.29.0"; sha256="1wkypbm5ldwx8y2n16fajf450pwv6zipjdk0176a5rqihaflz80l"; depends=[AnnotationDbi biomaRt prada]; };
 dualKS = derive { name="dualKS"; version="1.29.0"; sha256="1a2wb137x98nmdm8dvnl4msl89mlyvm8f1kqzr6jhdj4wjv2hrg1"; depends=[affy Biobase]; };
 dyebias = derive { name="dyebias"; version="1.27.0"; sha256="095qcnri2g19m363ipdi31xgn20b51mbfv5mgkk21m6fww1npc92"; depends=[Biobase marray]; };
-easyRNASeq = derive { name="easyRNASeq"; version="2.5.2"; sha256="142chhn3p8c22vm9mky2mx32s6d09by99fmrck87nglg0w8l2n9j"; depends=[Biobase BiocGenerics biomaRt Biostrings DESeq edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD Rsamtools S4Vectors ShortRead SummarizedExperiment]; };
+easyRNASeq = derive { name="easyRNASeq"; version="2.5.5"; sha256="0g2n3ayl06bn8khf5pail119i1611nq71vvqfkdh0v30nj9rsbw2"; depends=[Biobase BiocGenerics BiocParallel biomaRt Biostrings DESeq edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD Rsamtools S4Vectors ShortRead SummarizedExperiment]; };
 ecolitk = derive { name="ecolitk"; version="1.41.0"; sha256="0jga35q98bidqjlqynq0cack4gwsm3hw34vgns67v37krjs4hn9f"; depends=[Biobase]; };
 edge = derive { name="edge"; version="2.1.0"; sha256="1xxz8qyagrfr92ldaxlgb8dfpm6nx3lyk6fa4dl0m8yvlr6lw2fa"; depends=[Biobase MASS qvalue snm sva]; };
 edgeR = derive { name="edgeR"; version="3.11.2"; sha256="0df181xjga322phjinlffl0j2mg61pq4p8h3sxx3xz100c6xrahr"; depends=[limma]; };
 eiR = derive { name="eiR"; version="1.9.1"; sha256="01wkz9lc6gi1a98q02c6zyzfsnkk52px60xg3lawp2419dvj2ww3"; depends=[BH BiocGenerics ChemmineR DBI digest RCurl RUnit snow snowfall]; };
 eisa = derive { name="eisa"; version="1.21.0"; sha256="03366q5qj4wdfm4d9lwysmgz3bgwc53zynw2cmsj7w3yg6dj63km"; depends=[AnnotationDbi Biobase BiocGenerics Category DBI genefilter isa2]; };
 ensemblVEP = derive { name="ensemblVEP"; version="1.9.2"; sha256="10xjxafm97jnk7dfi0j1ahyd6hp45r5rpfr206fbiipcq3ha2p9h"; depends=[BiocGenerics Biostrings GenomicRanges VariantAnnotation]; };
-ensembldb = derive { name="ensembldb"; version="1.1.3"; sha256="1vp4bb3i5jw8kmxz1784wxwh2i9m344xhssfv5w4i2k9lx2anqrs"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics DBI GenomeInfoDb GenomicFeatures GenomicRanges Rsamtools RSQLite rtracklayer S4Vectors]; };
-epigenomix = derive { name="epigenomix"; version="1.9.1"; sha256="0jr0ly6sd818yhcpqk685y7fb4q8dd80w18qpwpypgf4ysymv36y"; depends=[beadarray Biobase BiocGenerics GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; };
-epivizr = derive { name="epivizr"; version="1.7.7"; sha256="00hjvpg6vr0kd1nhyr3dfjqyxy8jfgfkv0lainj48w7lr9ld7y9w"; depends=[Biobase GenomeInfoDb GenomicFeatures GenomicRanges httpuv mime OrganismDbi R6 rjson rtracklayer S4Vectors SummarizedExperiment]; };
-erccdashboard = derive { name="erccdashboard"; version="1.3.0"; sha256="06jvrlp0sfnkrcmyach1q0ry4pzyv2frzg4c0swr193vxv4mx14w"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr QuasiSeq qvalue reshape2 ROCR scales stringr]; };
+ensembldb = derive { name="ensembldb"; version="1.1.5"; sha256="1q32pcg07lgzzavcgx5843ljchklgbscw0qgifrs6d1hidbldjvq"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics DBI GenomeInfoDb GenomicFeatures GenomicRanges Rsamtools RSQLite rtracklayer S4Vectors]; };
+epigenomix = derive { name="epigenomix"; version="1.9.2"; sha256="0l7pa2nyllf7imapbxqavyg3h0ba3wc1bhrhz7a7bc8rr8qyq0w1"; depends=[beadarray Biobase BiocGenerics GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; };
+epivizr = derive { name="epivizr"; version="1.7.8"; sha256="01z80dbahjbf60d71hiqai5h5i546hvl2j737b4xjca9017g2wsg"; depends=[Biobase GenomeInfoDb GenomicFeatures GenomicRanges httpuv mime OrganismDbi R6 rjson rtracklayer S4Vectors SummarizedExperiment]; };
+erccdashboard = derive { name="erccdashboard"; version="1.3.1"; sha256="10ya8gzd9z3b7kwm9yf7v1cbxpqi1r7ghxwy1sg6b646gf3g580v"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr QuasiSeq qvalue reshape2 ROCR scales stringr]; };
+erma = derive { name="erma"; version="0.1.2"; sha256="046m88bjfkv8xkmz8il6l0zbp0wcr7n6wvsv2lavcyl09qnjghs0"; depends=[BiocGenerics GenomicFiles GenomicRanges ggplot2 rtracklayer S4Vectors]; };
 exomeCopy = derive { name="exomeCopy"; version="1.15.0"; sha256="1047k3whc8pjcrvb10dmykbc3c7ah4fgzsiqxw7asp4ksiqpj5ii"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; };
-exomePeak = derive { name="exomePeak"; version="1.9.0"; sha256="05bdwp8msi9i0hi505pwm4lxa8m0syrws934418sgfhfldlh5sip"; depends=[GenomicFeatures Rsamtools rtracklayer]; };
+exomePeak = derive { name="exomePeak"; version="1.9.1"; sha256="1lvzr8zsa61vj5qhd4yh9n8vmfw759b8gbpp6q9yxz1py1ky16y6"; depends=[GenomicAlignments GenomicFeatures Rsamtools rtracklayer]; };
 explorase = derive { name="explorase"; version="1.33.0"; sha256="0405q21ivvchmb37jksv46kwxgbmyiavznizn39asv6wrsvw62az"; depends=[limma rggobi RGtk2]; };
+fCI = derive { name="fCI"; version="0.99.10"; sha256="1gknc8pqznxkgdgc403s59xl6x9s8cdb5iql0q88kk8jcqc2fgyl"; depends=[FNN gtools psych rgl VennDiagram zoo]; };
 fabia = derive { name="fabia"; version="2.15.0"; sha256="1631f6q30cxzaw7vqjacr44hwzrjbvk0sw3v41zagpbqbbr11swx"; depends=[Biobase]; };
 facopy = derive { name="facopy"; version="1.3.0"; sha256="0nm7jds5c4p471qyzv61byl61frwnf71kkvcdrc876168bd6s9y3"; depends=[annotate cgdsr coin data_table DOSE FactoMineR ggplot2 GOstats graphite gridExtra igraph IRanges MASS nnet reshape2 Rgraphviz scales]; };
 factDesign = derive { name="factDesign"; version="1.45.0"; sha256="08d7ma718s8rdbmk00jdbwn9d1g431iaff7hc4ra421drl95yql1"; depends=[Biobase]; };
@@ -668,7 +676,7 @@ fastseg = derive { name="fastseg"; version="1.15.0"; sha256="12a308lr292nisf0k0w
 fdrame = derive { name="fdrame"; version="1.41.0"; sha256="1zmspa2mm7scv5lx83171hdn48y9vify58jcr6nxw15nj4lqbmsd"; depends=[]; };
 ffpe = derive { name="ffpe"; version="1.13.0"; sha256="0444g47cg6ci1lflmz84vjms0p918iaz65cm6whxx4z3pfjc55ls"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; };
 flagme = derive { name="flagme"; version="1.25.0"; sha256="0jj8rba2ggimwm709m2c78rpccvp9q8hx83c026pgmrryjv8qbzc"; depends=[CAMERA gplots MASS SparseM xcms]; };
-flipflop = derive { name="flipflop"; version="1.7.2"; sha256="0clwqz14lxg9m4jasjwksvs0afhv9rna2p8h91rgip5d3nhmjsp5"; depends=[GenomicRanges IRanges Matrix]; };
+flipflop = derive { name="flipflop"; version="1.7.3"; sha256="0731qxr479y1acarxd16m0bdy3q0qwgbyrlvp20dvyqs4b5qfj56"; depends=[GenomicRanges IRanges Matrix]; };
 flowBeads = derive { name="flowBeads"; version="1.7.0"; sha256="1knzfj14hwggvc41bba2chrjnl709bh2wxwv268mw18crc1gs140"; depends=[Biobase flowCore knitr rrcov xtable]; };
 flowBin = derive { name="flowBin"; version="1.5.0"; sha256="1728qzxpssh44ayk5bgjwdwzb98xalzciq7pzlcwg1yqgyxz81xv"; depends=[BiocGenerics class flowCore flowFP limma snow]; };
 flowCHIC = derive { name="flowCHIC"; version="1.3.0"; sha256="1g6kkmcja3am6dawdkmhyz9pl9xqivnp95zqxh8vd3a4la0ysazb"; depends=[EBImage flowCore ggplot2 hexbin vegan]; };
@@ -682,7 +690,7 @@ flowFP = derive { name="flowFP"; version="1.27.0"; sha256="15n57slfn0z4vzqhk38mf
 flowFit = derive { name="flowFit"; version="1.7.0"; sha256="079ygak8ysjh44l3gmvlc89x4argw15mlq380j77n19d3wqai8r9"; depends=[flowCore flowViz gplots kza minpack_lm]; };
 flowMap = derive { name="flowMap"; version="1.7.0"; sha256="030dv51xwskrc97kkm72wxbfsq1qj4fy9nknvxaydn3y1r2wakcs"; depends=[abind ade4 doParallel Matrix reshape2 scales]; };
 flowMatch = derive { name="flowMatch"; version="1.5.0"; sha256="1b81aik86m4y8n8khz7kxy2ibky7i06s9jzm4pydh41ypv6h0wv9"; depends=[Biobase flowCore Rcpp]; };
-flowMeans = derive { name="flowMeans"; version="1.23.0"; sha256="0y7dkfz0wjgmyjvsvqcqb9m59xq8bzd8bcp06dd6pgvb33aqlqr4"; depends=[Biobase feature flowCore rrcov]; };
+flowMeans = derive { name="flowMeans"; version="1.28.0"; sha256="038flcv69xn1yiflzl336xfjm93ca6ksgx55aj01inrnf6ks2696"; depends=[Biobase feature flowCore rrcov]; };
 flowMerge = derive { name="flowMerge"; version="2.17.0"; sha256="1sc7xqp4vkgc84by4vmbj0iy0vsrwadglwxbziigjai0ijsgrvfn"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; };
 flowPeaks = derive { name="flowPeaks"; version="1.11.0"; sha256="0ib9mgfq8lmakw2g0hj0dc75ifllpf5s9yfpkq3p5f6qqa8gncqw"; depends=[]; };
 flowPlots = derive { name="flowPlots"; version="1.17.0"; sha256="1y4g2kjdha6qn79cyb9mxkkj33wd2jndrpnpd1p0x1pvnjlyxhas"; depends=[]; };
@@ -694,7 +702,7 @@ flowType = derive { name="flowType"; version="2.7.0"; sha256="0zrwf7h62jd5xgs0kq
 flowUtils = derive { name="flowUtils"; version="1.33.0"; sha256="0r7l8fbi3p1y7ql60czlqhxx4l0fzxv50phwkr5w85jxxldk2pjm"; depends=[Biobase corpcor flowCore flowViz graph RUnit XML]; };
 flowVS = derive { name="flowVS"; version="1.1.0"; sha256="0g1zmcr1wd3xccx2z1akwk177innzrngmxc5r4hjanl37l0skrpq"; depends=[flowCore flowStats flowViz]; };
 flowViz = derive { name="flowViz"; version="1.33.2"; sha256="11qbpf0yw1gjzgw3pb7mnqfvwd60nms4cwrwag8h36a5whfd158c"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; };
-flowWorkspace = derive { name="flowWorkspace"; version="3.15.6"; sha256="111a5kvcz3hyw7269fg6b0885g63f8r02dkzfidfcq2pg4n2sa8w"; depends=[BH Biobase BiocGenerics data_table flowCore flowViz graph gridExtra lattice latticeExtra ncdfFlow plyr RBGL RColorBrewer Rcpp Rgraphviz stringr XML]; };
+flowWorkspace = derive { name="flowWorkspace"; version="3.15.12"; sha256="1fw5xg93x92acg2vimp6ks9sxqkqc4vbkghvj4shagnck2zjs0dw"; depends=[BH Biobase BiocGenerics data_table dplyr flowCore flowViz graph gridExtra lattice latticeExtra ncdfFlow plyr RBGL RColorBrewer Rcpp Rgraphviz stringr XML]; };
 flowcatchR = derive { name="flowcatchR"; version="1.3.0"; sha256="0zgbnfh3sq6s8y81al379lrif67w5xffc6n3fd5y8bp2wmdqmx8b"; depends=[abind BiocParallel colorRamps EBImage rgl]; };
 fmcsR = derive { name="fmcsR"; version="1.11.4"; sha256="1ah1gyrhcyv4kqxi4n8yj14mgjh6v9l820k5hzb7fwbw74kh2pa5"; depends=[BiocGenerics ChemmineR RUnit]; };
 focalCall = derive { name="focalCall"; version="1.3.0"; sha256="1g3vk72xnzy2vsjjq7dnmmxiy29qg2bqij1iim9psb2zd6w387r5"; depends=[CGHcall]; };
@@ -710,7 +718,7 @@ gaggle = derive { name="gaggle"; version="1.37.0"; sha256="1429xffj08m3dgfp6z34n
 gaia = derive { name="gaia"; version="2.13.0"; sha256="10vpz16plzi651aj1f5h3iwz6nzrrdnl9sgx3sgv5wmks2haqij4"; depends=[]; };
 gaucho = derive { name="gaucho"; version="1.5.0"; sha256="0kl8fw1n6dkqmrjp0xri3w2fhx25llrjag7j50m2xh371zfw9chc"; depends=[GA graph heatmap_plus png Rgraphviz]; };
 gcrma = derive { name="gcrma"; version="2.41.0"; sha256="03ncgd26hmj4l0mnnif1cf5qg99ir66d0mafx7wamrr930m17v8x"; depends=[affy affyio Biobase BiocInstaller Biostrings XVector]; };
-gdsfmt = derive { name="gdsfmt"; version="1.5.1"; sha256="04pp9lw0548243k6almy4ckwv7sd805b7kkp87dq3z087h7287s7"; depends=[]; };
+gdsfmt = derive { name="gdsfmt"; version="1.5.6"; sha256="0xncblhsfzwzxmki0mir6khpjb4d5sjc452br8jq0hp9khl9j937"; depends=[]; };
 geNetClassifier = derive { name="geNetClassifier"; version="1.9.2"; sha256="04k1j2hqbs75k250i8b17bb8b84mij0hyb3yk1jl1368mpn5vmhc"; depends=[Biobase e1071 EBarrays minet]; };
 geecc = derive { name="geecc"; version="1.3.0"; sha256="0s955yg31papyny42nnqq711hawk5nn3dqgsf24ldz93vjiif9dr"; depends=[gplots hypergea MASS]; };
 genArise = derive { name="genArise"; version="1.45.0"; sha256="07xyy6wa22sa0ziqvy1dvpmpq11j56aw70kvj834da003yvabmg1"; depends=[locfit tkrplot xtable]; };
@@ -720,8 +728,8 @@ genefilter = derive { name="genefilter"; version="1.51.0"; sha256="0zrav2zw7v67i
 genefu = derive { name="genefu"; version="1.19.0"; sha256="05rzq0dy4v7z57zqdg9v2csj3ncv2n76igbz2a9nvjpmqrgfcqlc"; depends=[amap biomaRt mclust survcomp]; };
 geneplotter = derive { name="geneplotter"; version="1.47.0"; sha256="03vl60rhhfh8imp0ihx83gq9r64gdnh2gjdm7pzi4yc03afqgaw8"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; };
 genoCN = derive { name="genoCN"; version="1.21.0"; sha256="10q16kch3gn6phx1zk3aii87f4liy5l6mp0kvjf29x6aam11l7c7"; depends=[]; };
-genomation = derive { name="genomation"; version="1.1.4"; sha256="1217xm5rqngag4r2r95z7wxwmdlassghwkxqpljqnangix4c0h96"; depends=[GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges plyr readr reshape2 Rsamtools rtracklayer]; };
-genomeIntervals = derive { name="genomeIntervals"; version="1.25.0"; sha256="1dy71hdqw02kv5rqa80w4bfbn247hj6fqqsc12qimk3l60z38rpr"; depends=[BiocGenerics intervals]; };
+genomation = derive { name="genomation"; version="1.1.5"; sha256="0x4pgs7g46giv6z92hqa0fgq3fbw5p2jm5h8qzbwsvir3y7fnf79"; depends=[GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges plyr readr reshape2 Rsamtools rtracklayer]; };
+genomeIntervals = derive { name="genomeIntervals"; version="1.25.2"; sha256="145xg7pjihfg6qmjfmswf33hkxsnq8ml02x6s6y90giyxlmjqisk"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; };
 genomes = derive { name="genomes"; version="2.15.0"; sha256="1a172fz97b6xg4w91dcjbdr9kx0grzf71qn2j7zlyz52dcqppybb"; depends=[Biostrings GenomicRanges IRanges RCurl XML]; };
 genoset = derive { name="genoset"; version="1.23.2"; sha256="0j23ym7v47fv2f2j25hfc4xh1113614ixdd1accx9gindbqf72cl"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
 gespeR = derive { name="gespeR"; version="1.1.0"; sha256="0hp2pw4z5kgj4av339v7r43is082c47ms422pwwa5f2pljijz2z6"; depends=[Biobase biomaRt cellHTS2 doParallel foreach ggplot2 glmnet Matrix reshape2]; };
@@ -736,17 +744,17 @@ goseq = derive { name="goseq"; version="1.21.1"; sha256="175xg4qyy2iq9vmxsvd120q
 gpls = derive { name="gpls"; version="1.41.0"; sha256="050db8ag8wpngfkw686r9vjvdgbpz0slrdnmkb0vcm5ijzm172b2"; depends=[]; };
 gprege = derive { name="gprege"; version="1.13.0"; sha256="0z27521mjn5ipjq8wi3fbh2qw4k1q694l8268f8lypr9f357i1q4"; depends=[gptk]; };
 graph = derive { name="graph"; version="1.47.2"; sha256="0db15kd5qf993qdbr7dl2wbw6bgyg3kiqvd1iziqdq6d2vvbpzbj"; depends=[BiocGenerics]; };
-graphite = derive { name="graphite"; version="1.15.0"; sha256="1nzyrc3cwy35m7ijr5pjanvw868yw2d7sl9h3ns8w70af8ih6z14"; depends=[AnnotationDbi BiocGenerics graph]; };
+graphite = derive { name="graphite"; version="1.15.1"; sha256="1q3ybshd9yxivs1b5vj659c45qa8bf7r1dy3idg8g7glh9f2bgnl"; depends=[AnnotationDbi BiocGenerics graph]; };
 groHMM = derive { name="groHMM"; version="1.3.0"; sha256="0kx574xs0k51wwkvm6rbrrgr76ziwkkyqhiy076yzfsfkm3d1jvf"; depends=[GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; };
-gtrellis = derive { name="gtrellis"; version="1.1.0"; sha256="0cr4p22h0xh18pbr1jnz9dr6nv1q5a2bnx4nq5pz9jnn70lg7384"; depends=[circlize GetoptLong]; };
-gwascat = derive { name="gwascat"; version="2.1.3"; sha256="0wjl53zfrn6adwlfrqxj3nqndg753pi03dsm7xxjv7x2rkx1z1k8"; depends=[AnnotationHub BiocGenerics Biostrings GenomeInfoDb GenomicRanges gQTLstats Gviz IRanges Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; };
+gtrellis = derive { name="gtrellis"; version="1.1.1"; sha256="17jflcq97a3a7k735klj6pphn6ixyshggwi0n7b45jgkqi9j5s08"; depends=[circlize GetoptLong]; };
+gwascat = derive { name="gwascat"; version="2.1.4"; sha256="13hvh6rvlh13n9dxx9g1q68qz4mxsvv4sh0kc1931b3vz2mfs0m0"; depends=[AnnotationHub BiocGenerics Biostrings GenomeInfoDb GenomicRanges gQTLstats Gviz IRanges Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; };
 h5vc = derive { name="h5vc"; version="2.3.0"; sha256="1cl00k13x03sm60gfkxmaf6ba9kw4186cnik08zn446fipxqypla"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges reshape rhdf5 Rsamtools S4Vectors]; };
 hapFabia = derive { name="hapFabia"; version="1.11.0"; sha256="1jbj1bxqmvldpbbyq6d854srvzsr14jva1711zn4387b407knz7w"; depends=[Biobase fabia]; };
 hiAnnotator = derive { name="hiAnnotator"; version="1.3.2"; sha256="104d6wp331dvsdk5p9l7m70xr9jrwx0nzlrapi95c0p1nr3wr7bl"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; };
 hiReadsProcessor = derive { name="hiReadsProcessor"; version="1.3.0"; sha256="16gcjaiw8j82y5wzcbhh3yjym8xi4dqsf30i64ah6rb30i3bk716"; depends=[BiocGenerics BiocParallel Biostrings GenomicAlignments GenomicRanges hiAnnotator plyr rSFFreader sonicLength xlsx]; };
-hierGWAS = derive { name="hierGWAS"; version="0.99.2"; sha256="1i3ykpslp79y1v156bja971z3g3v1yb7bb2w26gv1p1kd8f57s6d"; depends=[fastcluster fmsb glmnet hlr]; };
+hierGWAS = derive { name="hierGWAS"; version="0.99.2"; sha256="1i3ykpslp79y1v156bja971z3g3v1yb7bb2w26gv1p1kd8f57s6d"; depends=[fastcluster fmsb glmnet]; };
 hopach = derive { name="hopach"; version="2.29.0"; sha256="08hfq74s3a4q94awhw6fiwlfnnv3rhkfpz56jbcyp6bi6y1rrp9d"; depends=[Biobase BiocGenerics cluster]; };
-hpar = derive { name="hpar"; version="1.11.0"; sha256="025hdmb70h2zf4g06spfdm09ni3i4qc21c2hp0mjdp3b2y2f9g9r"; depends=[]; };
+hpar = derive { name="hpar"; version="1.11.1"; sha256="1a00li932y6bgv9a9avpbyxm7h6fxjfgj3gazf0kh1zc5w0r2r1g"; depends=[]; };
 htSeqTools = derive { name="htSeqTools"; version="1.15.1"; sha256="0pv6csw7bgknjm0q42hrf3x22bx3xs0xm9hq9i46plwglq6c8kvn"; depends=[Biobase BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges MASS]; };
 hyperdraw = derive { name="hyperdraw"; version="1.21.0"; sha256="0w1rcaw5fysj257c8ybcvmrdayvkcmfl670ysg2wcp8nrgv6z7vg"; depends=[graph hypergraph Rgraphviz]; };
 hypergraph = derive { name="hypergraph"; version="1.41.0"; sha256="06fvmda8x81bv5bn21pmvpfx9ni01l23q1ph9rh3qj803mwa0d72"; depends=[graph]; };
@@ -766,7 +774,7 @@ impute = derive { name="impute"; version="1.43.0"; sha256="1wp02zd2vgpkalz830kah
 inSilicoDb = derive { name="inSilicoDb"; version="2.5.0"; sha256="1w5irx042z8if0pnvw9ra4a0hm0m1nbc2s9l2j59ww9l2qhj8hiq"; depends=[Biobase RCurl rjson]; };
 inSilicoMerging = derive { name="inSilicoMerging"; version="1.13.0"; sha256="0zaqwachxn3anbjyn0akv0n2djg08475cdxz7c44ja635r1f6y1j"; depends=[Biobase]; };
 intansv = derive { name="intansv"; version="1.9.0"; sha256="0vb5hls1yyw0x0ff2xcjmxplg0gar9g9xvs1bqw96bf9akcr12r9"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; };
-interactiveDisplay = derive { name="interactiveDisplay"; version="1.7.1"; sha256="0xqghsy7s7m2xkngsqjzxrfvs7jy2bqprvx4qm2a8d24q392abs0"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; };
+interactiveDisplay = derive { name="interactiveDisplay"; version="1.7.2"; sha256="1ql4qr5m1xsn3z57p2ndfc4b0zmxgjj0d3gb937ikfljm43jkwyk"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; };
 interactiveDisplayBase = derive { name="interactiveDisplayBase"; version="1.7.0"; sha256="0032ljfx6pj0c11imfhxsxvrcn3gwyb6j29xl8xv48x8z44r0vas"; depends=[BiocGenerics shiny]; };
 inveRsion = derive { name="inveRsion"; version="1.17.0"; sha256="1km1h75dh5q505x1ddlhvyqxy4c10wvlviiz2l8sv3g3m9mbd26h"; depends=[haplo_stats]; };
 iontree = derive { name="iontree"; version="1.15.0"; sha256="0frq4f357n5w08nwz3m7s0hv858kgcnlvxb4907yrg1b11zpfvmm"; depends=[rJava RSQLite XML]; };
@@ -779,14 +787,14 @@ kebabs = derive { name="kebabs"; version="1.3.3"; sha256="10pnr5fd2ni4w69qp30q81
 keggorthology = derive { name="keggorthology"; version="2.21.0"; sha256="1d3dz61llgmdnyqxqwv03pacfs97lzynzpjpmn7grf7bbpybjk2q"; depends=[AnnotationDbi DBI graph]; };
 lapmix = derive { name="lapmix"; version="1.35.0"; sha256="1sps41l210h782bry6n8h55ghnlqn7s5dx0bx2805y5izz01linm"; depends=[Biobase]; };
 les = derive { name="les"; version="1.19.0"; sha256="1b3zcvflwyybrh9pf33a0fn5qz6918sszjf0n666iqd3hh7zph8z"; depends=[boot fdrtool gplots RColorBrewer]; };
-limma = derive { name="limma"; version="3.25.9"; sha256="19kzyja25bchvcnbl8g2xfzi1rypja44312g94qssiyanlw1i2bp"; depends=[]; };
+limma = derive { name="limma"; version="3.25.12"; sha256="1gl13qnbj4w2bzdxf1ml603r1ccyq0wv1ynlrgb8j9sa7z228ri9"; depends=[]; };
 limmaGUI = derive { name="limmaGUI"; version="1.45.0"; sha256="05pqzb5nq3paddq2zw80gvdaf8rvynga8zs24rwzjpz3ylakqngr"; depends=[AnnotationDbi BiocInstaller gcrma limma R2HTML tkrplot xtable]; };
 lmdme = derive { name="lmdme"; version="1.11.0"; sha256="0j41rfvbhz31vniax7njnslxd94lws4jjfv3hc2s1ihxnj41dcma"; depends=[limma pls]; };
 logicFS = derive { name="logicFS"; version="1.39.0"; sha256="1sz4bxsg76437j42i6cpbqvj5a35q7dwhya4yh1gmknqjrrcrv56"; depends=[LogicReg mcbiopi]; };
 logitT = derive { name="logitT"; version="1.27.0"; sha256="13gglwkvwrc5xr44ynz10qzyksry0wamk9mjlsfb18c2ncbnyypq"; depends=[affy]; };
 lol = derive { name="lol"; version="1.17.1"; sha256="0adj2bg8akb3z0w3wqj6bdlypf9c587k5c2npx0l21hgy4qv7p8k"; depends=[Matrix penalized]; };
-lpNet = derive { name="lpNet"; version="2.1.1"; sha256="15v3mpxrm1qq3hnwwnahziafpy83b35i69qyggdvzszwg1cpn5vi"; depends=[lpSolve nem]; };
-lumi = derive { name="lumi"; version="2.21.1"; sha256="16cg8zsfvw4fc51zr27ymp7a0qc59y0cvp2j7bsfw6ip0avmgkgk"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; };
+lpNet = derive { name="lpNet"; version="2.1.2"; sha256="0qy2ardh00gf3xkhqphvmdsnsxa4pjrdpcxpjs53nw68bcsbgy9g"; depends=[lpSolve nem]; };
+lumi = derive { name="lumi"; version="2.21.2"; sha256="0nfkzf11lnpvyqng8ns6nf23qkap04fir8cbqngnzm6yddfk33dq"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; };
 mAPKL = derive { name="mAPKL"; version="1.1.0"; sha256="1knjvwd0z4i70py0dqcngz56j78ylhcxsw8dyxj80ns5jzsdppbx"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene]; };
 mBPCR = derive { name="mBPCR"; version="1.23.0"; sha256="0c0idj213l8gwxkh9sb03dr4jhlbwvkpghldccbjrqnk4jqs4zpp"; depends=[Biobase oligoClasses SNPchip]; };
 mQTL_NMR = derive { name="mQTL.NMR"; version="1.3.0"; sha256="05q3p6pxi5x89z3zyrvdv5p2lzwr3as3zwcg8k0zm70liyczqcbx"; depends=[GenABEL MASS outliers qtl]; };
@@ -819,16 +827,16 @@ metaseqR = derive { name="metaseqR"; version="1.9.0"; sha256="0p8bpnjm73jkng2xry
 methVisual = derive { name="methVisual"; version="1.21.0"; sha256="18kin1ibcc4ilfh59qgb0zilhvhvs0a1gmbg0lbvj2r0kbsk1ryy"; depends=[Biostrings ca gridBase gsubfn IRanges plotrix sqldf]; };
 methyAnalysis = derive { name="methyAnalysis"; version="1.11.0"; sha256="0ka0svxvb76j0xkdx4pbwf2cyplihh45mb953csrapyh5r6hxwkn"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges genoset Gviz IRanges lumi methylumi rtracklayer S4Vectors VariantAnnotation]; };
 methylMnM = derive { name="methylMnM"; version="1.7.0"; sha256="08y13kkmafn2h55wwkgs1mpskb4i2wpxzzgjdr9gb3ns06qc9799"; depends=[edgeR statmod]; };
-methylPipe = derive { name="methylPipe"; version="1.3.3"; sha256="1skds6ac2s2grb3s5ay0b6j91qmpag8cmqqh0plnqjvh5zdsi733"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; };
-methylumi = derive { name="methylumi"; version="2.15.1"; sha256="02bgqja3zzd3ps8a2r6k9whdvnzi4h44vjmrjgqljmmr40pspqqw"; depends=[annotate AnnotationDbi Biobase BiocGenerics genefilter GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; };
+methylPipe = derive { name="methylPipe"; version="1.3.4"; sha256="17y9xsvl6wgm7kn8g35h3zh7bcqhy7qp2lia6dzx609i04a9br9f"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; };
+methylumi = derive { name="methylumi"; version="2.15.2"; sha256="174hikk5flwylifv7n8n67aps4np06klw240bdzfr347r8yrvikp"; depends=[annotate AnnotationDbi Biobase BiocGenerics genefilter GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; };
 mgsa = derive { name="mgsa"; version="1.17.0"; sha256="1nic4bgk3g3j2l6vr3i3msmid2bz0n7bq8f8zq26n45sr37wb4wq"; depends=[gplots]; };
 miRNApath = derive { name="miRNApath"; version="1.29.0"; sha256="07r37gzn0y5cp4awj2i638i2cn019rnp7b4hnaqi3gc71sdzb25c"; depends=[]; };
 miRNAtap = derive { name="miRNAtap"; version="1.3.0"; sha256="0hmnhbbai04wp8hxrpgq04czfx2c49aihq7iiz86x9hzlj6xhgn6"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; };
 microRNA = derive { name="microRNA"; version="1.27.0"; sha256="1akq1yxc03v7jmpypmr8a9lx5h2nfdjp1y0433lyffbd49wia2gm"; depends=[Biostrings]; };
 minet = derive { name="minet"; version="3.27.0"; sha256="1wnn3nlpa0ymk465ax2s65i3w9xplhwssvng9qs7p3v2z72p9nqp"; depends=[infotheo]; };
-minfi = derive { name="minfi"; version="1.15.7"; sha256="09v8flkn0ja1q9glzfa5bsaflvx7w240w38fp59dgknz4xr1zp3r"; depends=[beanplot Biobase BiocGenerics Biostrings bumphunter genefilter GenomeInfoDb GenomicRanges GEOquery illuminaio IRanges lattice limma MASS matrixStats mclust mixOmics nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; };
+minfi = derive { name="minfi"; version="1.15.9"; sha256="1q21b57iw8lbzbjq96qmlmccijz0apr9clasrz4nbmbgyn97gba2"; depends=[beanplot Biobase BiocGenerics Biostrings bumphunter genefilter GenomeInfoDb GenomicRanges GEOquery illuminaio IRanges lattice limma MASS matrixStats mclust mixOmics nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; };
 mirIntegrator = derive { name="mirIntegrator"; version="0.99.5"; sha256="0r8l1lgf9rdxnr0dvc8r05ahjf3q0r4syy9mzx4p3f04s0c78q3h"; depends=[AnnotationDbi ggplot2 graph Rgraphviz ROntoTools]; };
-missMethyl = derive { name="missMethyl"; version="1.3.1"; sha256="07l7jnw5ixlhhphrxhalkh50swc8jr4pfkgvzf33hiid4g9jkqsk"; depends=[limma methylumi minfi ruv statmod stringr]; };
+missMethyl = derive { name="missMethyl"; version="1.3.2"; sha256="05xk70z813jgwz9darqwh0f9ybycq9krig486b3751dd0xnjgmcq"; depends=[limma methylumi minfi ruv statmod stringr]; };
 mitoODE = derive { name="mitoODE"; version="1.7.0"; sha256="182ifqh1g1yz8rbsxdqgk4hzlz3dwy0d03iklbg39cxy6qhgxqg4"; depends=[KernSmooth MASS minpack_lm]; };
 mmnet = derive { name="mmnet"; version="1.7.0"; sha256="0za8a3j2fzyi15hd7l3ccw5qy3lyl7vihbcbixaw2kb81hmpphsa"; depends=[Biobase biom flexmix ggplot2 igraph KEGGREST Matrix plyr RCurl reshape2 RJSONIO stringr XML]; };
 mogsa = derive { name="mogsa"; version="1.1.3"; sha256="0rzqlm0c4skjgic334nfd2s7p0xk86mv1zbwjk036nwf5lnmdd0i"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; };
@@ -841,11 +849,11 @@ msmsEDA = derive { name="msmsEDA"; version="1.7.0"; sha256="1hywj0vvrqq1zg62gr1r
 msmsTests = derive { name="msmsTests"; version="1.7.0"; sha256="1qvi91shpy02irppq6g6lq43sp3rk2j7n1nfnm2p9767rdhbj13b"; depends=[edgeR msmsEDA MSnbase qvalue]; };
 mtbls2 = derive { name="mtbls2"; version="0.99.8"; sha256="0x5slfyn6gq5bhvpi820g93q2xzs8hb3s5yw4inpra0wpdmnvmkz"; depends=[]; };
 multiscan = derive { name="multiscan"; version="1.29.0"; sha256="0rp1nc8vjr8b0v9bcwrnsvdfklan0zc2cilrmwz1ikz0k5gnc0sq"; depends=[Biobase]; };
-multtest = derive { name="multtest"; version="2.25.1"; sha256="07ywm87prs1lyndwdsccswfhfz28ahasalwhn95vdkk50r7d3drf"; depends=[Biobase BiocGenerics MASS survival]; };
+multtest = derive { name="multtest"; version="2.25.2"; sha256="1gby3am0rp62lsijhbr8yx8y457yhrv2ghdb41kl53r59mw8ba4z"; depends=[Biobase BiocGenerics MASS survival]; };
 muscle = derive { name="muscle"; version="3.11.0"; sha256="1s3apdcd0qj08bswn7smj7b93yv9qar7wrzyfkp5z3m16jgz979x"; depends=[Biostrings]; };
 mvGST = derive { name="mvGST"; version="1.3.0"; sha256="1chskyx9hgymxg57p6y98rw743lapssx18axvl0r9f2zsmmfz9bn"; depends=[annotate AnnotationDbi GOstats gProfileR graph Rgraphviz stringr topGO]; };
-mygene = derive { name="mygene"; version="1.4.0"; sha256="1f1nqf2h679z6j9pshc393qygdygs3s4spz2n7iwr56aqkbnccf6"; depends=[GenomicFeatures Hmisc httr jsonlite S4Vectors sqldf]; };
-mzID = derive { name="mzID"; version="1.7.0"; sha256="0gkkyxb7zk0c8ynddxxv7bym2lzpn8yn1ww6xf9bp9ax1zc021wk"; depends=[doParallel foreach iterators plyr XML]; };
+mygene = derive { name="mygene"; version="1.5.1"; sha256="0f1ck375fqbz3ydjjg9qd9av8jbpc840nv3j83qic8g3r2pck8ij"; depends=[GenomicFeatures Hmisc httr jsonlite S4Vectors sqldf]; };
+mzID = derive { name="mzID"; version="1.7.1"; sha256="1pp0zfffz91g16y1kr81mbham64g00mm3q539ykj5az34g5q1fcm"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; };
 mzR = derive { name="mzR"; version="2.3.1"; sha256="19piyqgdxpi777nd4860d6mp0g4zzcf3wf7q7ilm99jqav9lfrn8"; depends=[Biobase BiocGenerics ProtGenerics Rcpp zlibbioc]; };
 ncdfFlow = derive { name="ncdfFlow"; version="2.15.2"; sha256="0s65c26r6q8di73iwpkrx4g3d9dy6v18vna7yy7di5vsgy0phr9l"; depends=[BH Biobase flowCore flowViz Rcpp RcppArmadillo zlibbioc]; };
 neaGUI = derive { name="neaGUI"; version="1.7.0"; sha256="198b0vrr5qp66z4sccwy6rh8sjxpw3qjkdryygg1baxq91ra76p1"; depends=[hwriter]; };
@@ -861,14 +869,14 @@ npGSEA = derive { name="npGSEA"; version="1.5.1"; sha256="0yh0cj6sj4r8sqv8xszpzw
 nucleR = derive { name="nucleR"; version="2.1.0"; sha256="0w9hmrahbk14gijv1ngps70m5f9lijbqr1lgpdbrjcqn7ff96yrq"; depends=[Biobase BiocGenerics GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; };
 nudge = derive { name="nudge"; version="1.35.0"; sha256="1135k3nz8613vrib7fxmn669f31h5k1szy0r20qwmji28806arrk"; depends=[]; };
 occugene = derive { name="occugene"; version="1.29.0"; sha256="1vlm93r8xxp4dl8yv3hcg618vc5s7wbn7kcw4qpk8kyqaqcjqw2r"; depends=[]; };
-oligo = derive { name="oligo"; version="1.33.0"; sha256="0110j0lv1n1m81z3lvyqb5y0zzjda34i5xb5rm0n1s641f5cw82v"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; };
+oligo = derive { name="oligo"; version="1.33.1"; sha256="1vi1jy6nb34sg4hhqwirddg1rgm6rhf3mx1fcjq8blfx9mz6nvzb"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; };
 oligoClasses = derive { name="oligoClasses"; version="1.31.1"; sha256="0likyfm4xq6s34l9pj7n3my04zrfvrhrcwd1ydbg7jpss2piy4lm"; depends=[affyio Biobase BiocGenerics BiocInstaller Biostrings ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; };
 omicade4 = derive { name="omicade4"; version="1.9.3"; sha256="00dr419qd563d75srypc02j6m5v281995mrh0r6fylz5bmi9bbks"; depends=[ade4 made4]; };
 oneChannelGUI = derive { name="oneChannelGUI"; version="1.35.0"; sha256="1diclgl4zkzzyz705cyqx983bw4zqw03rx7fn9515w0ifl0bk1r4"; depends=[affylmGUI Biobase Biostrings chimera IRanges Rsamtools siggenes tkrplot tkWidgets]; };
 ontoCAT = derive { name="ontoCAT"; version="1.21.0"; sha256="10d0a0fxg2h9gf6d1jbilxxg8irbqb1k526689qkdn2zh0qjvv04"; depends=[rJava]; };
-openCyto = derive { name="openCyto"; version="1.7.0"; sha256="11hhgxfwl6z7s6dzvr9bs3px21mwwv0b203snv6xgzan4wh11iyw"; depends=[Biobase clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; };
-oposSOM = derive { name="oposSOM"; version="1.5.1"; sha256="055ya0xvld0c7sl0s9cz7zmpw3ayqbskbya730cskzw5nz104lpg"; depends=[ape Biobase biomaRt fastICA fdrtool igraph KernSmooth pixmap scatterplot3d som]; };
-pRoloc = derive { name="pRoloc"; version="1.9.2"; sha256="1q9xaxz8if6ihs5a3ihbk2ayil1fxs8s34ij7gw7sv8hy6pvpm9s"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class e1071 FNN ggplot2 gtools kernlab knitr lattice MASS mclust MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; };
+openCyto = derive { name="openCyto"; version="1.7.2"; sha256="1x92yam7zdmsf6x0xqydwz70qmh3gzzi64mbiwrihr8abcjmhjhd"; depends=[Biobase clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; };
+oposSOM = derive { name="oposSOM"; version="1.5.2"; sha256="0zvclv05sfgk0mq169igaqhqmx2hqj3iwrxrjgryy276xjywhxcr"; depends=[ape Biobase biomaRt fastICA fdrtool igraph KernSmooth pixmap scatterplot3d som]; };
+pRoloc = derive { name="pRoloc"; version="1.9.3"; sha256="09pi362w1vfcx6fsr6bbsjqq9wq93dzhw0myavxsj11g3pnqh66n"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class e1071 FNN ggplot2 gtools kernlab knitr lattice MASS mclust MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; };
 pRolocGUI = derive { name="pRolocGUI"; version="1.3.0"; sha256="1k7r8fhj4fqizk1w76mfcdd9sj3y7vxiq3kzfrkbk674gl1jsgmq"; depends=[MSnbase pRoloc shiny]; };
 paircompviz = derive { name="paircompviz"; version="1.7.0"; sha256="0sf80ji20q6kaqw2747an9b51xxwhl55yj5y7q6j68gif1ndkzl4"; depends=[Rgraphviz]; };
 pandaR = derive { name="pandaR"; version="1.1.0"; sha256="03aa0s1mifq5hyg4xshbjqz9javphgb11135zvfg8cqdq34dzg4m"; depends=[]; };
@@ -900,7 +908,7 @@ plier = derive { name="plier"; version="1.39.0"; sha256="0ws919mrm8q719ssmxsxb4m
 plrs = derive { name="plrs"; version="1.9.0"; sha256="1lwnzbq2f75zh191g8zjljajq1qypvi2abzjsq5vfyqr3jnzpah8"; depends=[Biobase BiocGenerics CGHbase ic_infer marray quadprog Rcsdp]; };
 plw = derive { name="plw"; version="1.29.0"; sha256="0rc31452gnzxxz5rwg932i680xx8azdvailn4id6fnkr5xqr1d5a"; depends=[affy MASS]; };
 pmm = derive { name="pmm"; version="1.1.0"; sha256="05vix8j0rpvnyfkdb043d24vrbpdvkjmb8cqpqbg0knja178c8cg"; depends=[lme4]; };
-podkat = derive { name="podkat"; version="1.1.2"; sha256="1jqb55mnys66grhkx9d5yzf4c6x1vb0g0arfibv7ayzlsgw1cwxx"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rsamtools]; };
+podkat = derive { name="podkat"; version="1.1.3"; sha256="0q2in4lbd1y421gn0758kv54i5c92hxlhi14pr70n2jbk2izqf4d"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rsamtools]; };
 polyester = derive { name="polyester"; version="1.5.0"; sha256="1qpnabv5c7wi1qw8lp3nvnv4dass7g6chz6blyg3k572p0zhzm47"; depends=[Biostrings IRanges limma logspline S4Vectors]; };
 ppiStats = derive { name="ppiStats"; version="1.35.0"; sha256="10c3lnipwnpg0j938c1hxz1qgysc4n56lmsw7n6cra57zkr0whxj"; depends=[Biobase Category graph lattice RColorBrewer ScISI]; };
 prada = derive { name="prada"; version="1.45.0"; sha256="140fv2yrgdf9ab26k14n0l6yd03vidi5y3dn4d1ybkyc66rx8xpa"; depends=[Biobase BiocGenerics MASS RColorBrewer rrcov]; };
@@ -915,7 +923,7 @@ proteoQC = derive { name="proteoQC"; version="1.5.0"; sha256="1khhy7y1w8pyccc3x1
 puma = derive { name="puma"; version="3.11.0"; sha256="1dgi08p70fifsa42gj4jd1651d8laq03fa52qvicsmwkjxxyd83w"; depends=[affy affyio Biobase mclust oligo]; };
 pvac = derive { name="pvac"; version="1.17.0"; sha256="0r9p96lp15883xix9gbr36pcjy7zg8yniag257mps58xagld0162"; depends=[affy Biobase]; };
 pvca = derive { name="pvca"; version="1.9.0"; sha256="1xi72iwarx3784l5hjf7vmwindsz4fbah5g9y2a2fllr5mjh421b"; depends=[Biobase lme4 Matrix vsn]; };
-pwOmics = derive { name="pwOmics"; version="1.1.7"; sha256="1750jxrdb801ipzkr8y2zkgr79bzxxzsnyvcj4jamifljv49gz5c"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots igraph rBiopaxParser STRINGdb]; };
+pwOmics = derive { name="pwOmics"; version="1.1.8"; sha256="0nayswisdia4p4vxnzf5zgcgpld53rfcb3v7yrxyak4adp0d3lqd"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots igraph rBiopaxParser STRINGdb]; };
 qcmetrics = derive { name="qcmetrics"; version="1.7.0"; sha256="1qrhl7w131yzkvck9ifqf966lmh8f9y9xlmrg2g3dgh29vgww54b"; depends=[Biobase knitr Nozzle_R1 pander S4Vectors xtable]; };
 qpcrNorm = derive { name="qpcrNorm"; version="1.27.0"; sha256="0lmk9ksfrrw8zvhq20kg3kv0aqr8wx342nmw7zxvjv7l8z3d33sf"; depends=[affy Biobase limma]; };
 qpgraph = derive { name="qpgraph"; version="2.3.3"; sha256="1ykijxsg8yc3d1k9ip0p0zqrv75l9ps6q7h1naqw9sjhk6nqwf0g"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; };
@@ -933,7 +941,7 @@ rMAT = derive { name="rMAT"; version="3.19.0"; sha256="0nhmf1hbiqwzb9035405f8asn
 rRDP = derive { name="rRDP"; version="1.3.0"; sha256="0q373nfs4ynjnmq9rp0c0ficnnylwb2gf1j0bzlnxcd2cwz215zv"; depends=[Biostrings]; };
 rSFFreader = derive { name="rSFFreader"; version="0.17.1"; sha256="105qlrjq4777k4ps2h7gmr2ywix9skrylhg4ds3dw0pi6n9a4w8n"; depends=[Biostrings IRanges S4Vectors ShortRead XVector]; };
 rTANDEM = derive { name="rTANDEM"; version="1.9.0"; sha256="08r73kv83w8rfglbqf2zvczj4yix7sfhvrz93wk22nry04jfgccr"; depends=[data_table Rcpp XML]; };
-rTRM = derive { name="rTRM"; version="1.7.0"; sha256="0lqzxcgz36dsvqlx218cc9h785vw3czxsq93z388adraw7i0r55x"; depends=[AnnotationDbi igraph RSQLite]; };
+rTRM = derive { name="rTRM"; version="1.7.1"; sha256="06p38i0hif1kjsy4xa88jhfl5giprq8gfa15zh1yv1qdqhaf1v1m"; depends=[AnnotationDbi DBI igraph RSQLite]; };
 rTRMui = derive { name="rTRMui"; version="1.7.0"; sha256="132cm40hxhb4apdidifbw90jyxhlz0dqxgqsr6awv8q6dy9jpfw4"; depends=[MotifDb rTRM shiny]; };
 rain = derive { name="rain"; version="1.3.0"; sha256="0ak8wbhsglnylzy1jzh9hb2yxqjzmspvj98x10vf3qmgbqc30i4y"; depends=[gmp multtest]; };
 rama = derive { name="rama"; version="1.43.0"; sha256="1siqzb0b9j51b06aijz85xn6c9v4dqvcw7scmrlfpf18dihqaig1"; depends=[]; };
@@ -941,27 +949,28 @@ randPack = derive { name="randPack"; version="1.15.0"; sha256="0m9729h3fia15rcgx
 rbsurv = derive { name="rbsurv"; version="2.27.0"; sha256="1v97vrralg445zn8s3km7vmhlxhkv8bdwcj90fyvd6kfk7gm4xc7"; depends=[Biobase survival]; };
 rcellminer = derive { name="rcellminer"; version="1.1.1"; sha256="04ddqp6kxsdhanp7xfifhcvm8hirb915wl15m2qzwx5xy4l97vry"; depends=[Biobase fingerprint gplots rcdk shiny stringr]; };
 reb = derive { name="reb"; version="1.47.0"; sha256="1lxl4mzfz9b7hmq4fd7bsplxmknb8a3ffwdpddik3wry8rpqzmsd"; depends=[Biobase idiogram]; };
-regionReport = derive { name="regionReport"; version="1.3.4"; sha256="0n5l83izk4xr59f1npp1rwhghn4g19yy8wn2h7q2pb4hwdqa3sfd"; depends=[bumphunter derfinder derfinderPlot devtools GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges knitcitations knitr knitrBootstrap mgcv RColorBrewer rmarkdown whisker]; };
+regionReport = derive { name="regionReport"; version="1.3.8"; sha256="0gpifx0x2khqacmmxpxps09scdqfm4n0fns2jx0v54iabhswgafj"; depends=[bumphunter derfinder derfinderPlot devtools GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges knitcitations knitr knitrBootstrap mgcv RColorBrewer rmarkdown whisker]; };
 regioneR = derive { name="regioneR"; version="1.1.1"; sha256="1wylrkqiv5lc9rw3mc1by88ckx437jwhlgyg5kasvpry003rm72c"; depends=[BSgenome GenomicRanges memoise rtracklayer]; };
 rfPred = derive { name="rfPred"; version="1.7.0"; sha256="0k1z7bqdjmm668kipz8c74kd9k1vw2pcjbirxdi88clrclz3i47y"; depends=[data_table GenomicRanges IRanges Rsamtools]; };
 rgsepd = derive { name="rgsepd"; version="1.1.0"; sha256="1rvzlzh43j3sj2vrhmg13hl4wq3bg9hml3xq2dpx28lapynywm41"; depends=[AnnotationDbi biomaRt DESeq2 GenomicRanges goseq gplots hash]; };
-rhdf5 = derive { name="rhdf5"; version="2.13.1"; sha256="01ldm91wq6klcs2djpy95m5gvspql2b35q51ba9p5017h3brvrqm"; depends=[zlibbioc]; };
+rhdf5 = derive { name="rhdf5"; version="2.13.4"; sha256="0vby0cpsc22jrq37p3sxj6f3q0l238d28lx0p558mh8nks9fkai1"; depends=[zlibbioc]; };
 riboSeqR = derive { name="riboSeqR"; version="1.3.0"; sha256="0jlh5q1hkxkfvy496hlbwfkl17k36n304yiyz9f0azq5kv7jz1y2"; depends=[abind GenomicRanges]; };
 rnaSeqMap = derive { name="rnaSeqMap"; version="2.27.0"; sha256="1638vikgizcgg4bpfm61ak98smwy74dk5hyx73qjbisd49zvy5nk"; depends=[Biobase DBI DESeq edgeR GenomicAlignments GenomicRanges IRanges Rsamtools]; };
-roar = derive { name="roar"; version="1.5.1"; sha256="1r4m95lw27rrdzfxi52llx50i3vm7k7br198k573ycmm6p941fwk"; depends=[GenomicAlignments GenomicRanges rtracklayer S4Vectors SummarizedExperiment]; };
-rols = derive { name="rols"; version="1.11.2"; sha256="0mzw65knb7y41zamvnx2j3pl10b48y6xb4ajc7297dgf23v8bxms"; depends=[Biobase XML]; };
-rpx = derive { name="rpx"; version="1.5.0"; sha256="1348x8jzc0bjxhyzi5yjrhx0v8jxd3x7slidjzi924aqbnn7shs0"; depends=[RCurl XML]; };
+rnaseqcomp = derive { name="rnaseqcomp"; version="0.99.3"; sha256="0gyz91ayyr1834hr6jg1bnjiiiw4k75j3kn5pfmw9q8v9vg2fcsj"; depends=[RColorBrewer]; };
+roar = derive { name="roar"; version="1.5.2"; sha256="0g0ylr49dvnbyb1kwj20hrh3y3x49n4rbdvg7mpdg1byrygcli3c"; depends=[GenomicAlignments GenomicRanges rtracklayer S4Vectors SummarizedExperiment]; };
+rols = derive { name="rols"; version="1.11.6"; sha256="0wgzvwfq677dkqzzcq071xbh6v47vkcrzw66ch1vg348pcj58z0f"; depends=[Biobase XML]; };
+rpx = derive { name="rpx"; version="1.5.1"; sha256="048qldpx4zsp55jkr8g8vljiyidm9kzv4p1vwh1983y38qbz882v"; depends=[RCurl XML]; };
 rqubic = derive { name="rqubic"; version="1.15.0"; sha256="19n613m7x48wkrfrhnd0ab9018m5dd7rf08qjbgphakwycssfgcw"; depends=[biclust Biobase BiocGenerics]; };
 rsbml = derive { name="rsbml"; version="2.27.0"; sha256="10qmv5gpgqffnr5wqh7zik0l2d1cg0c0m3xak4r4bqmsd1y4dw01"; depends=[BiocGenerics graph]; };
-rtracklayer = derive { name="rtracklayer"; version="1.29.10"; sha256="04p3hpxf5jnyfjh5pign7r4k47pzl9m0g84cq93p8cb2jgywc97a"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl Rsamtools S4Vectors XML XVector zlibbioc]; };
+rtracklayer = derive { name="rtracklayer"; version="1.29.12"; sha256="0gz3284d5cy3n0hr5w7x86lraryfi2jdg1yzj2jg6cq0hgga40c1"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl Rsamtools S4Vectors XML XVector zlibbioc]; };
 sRAP = derive { name="sRAP"; version="1.9.0"; sha256="0rvnq41gns4ccr6gnfw0xbbi2c2wjl14qh0yr7wj7s4yrxzqr866"; depends=[gplots pls qvalue ROCR WriteXLS]; };
 sSeq = derive { name="sSeq"; version="1.7.0"; sha256="0wcw77cz47wklwsrwwimwryqmyc0lrd9mk2aawk0vx1zkqci1yca"; depends=[caTools RColorBrewer]; };
 safe = derive { name="safe"; version="3.9.0"; sha256="0x1gdzpgrm4m2m64h6y5rayp64j6ckxlr081d3w46zvfb935294a"; depends=[AnnotationDbi Biobase SparseM]; };
-sagenhaft = derive { name="sagenhaft"; version="1.39.0"; sha256="1jr4pi4qz5sapigx5lwrvaw2cjbm03hpisc0kf20id8q8sg4wqqw"; depends=[SparseM]; };
+sagenhaft = derive { name="sagenhaft"; version="1.39.1"; sha256="15aimbx6wn4il0jp12df1q2j7rfrifk84gk3khl6qkzwjd4k58c6"; depends=[SparseM]; };
 sangerseqR = derive { name="sangerseqR"; version="1.5.0"; sha256="0wiqaqzn6n63k1389nqj35k5wn93bq7c99gayblwjrhks0y9fll0"; depends=[Biostrings shiny]; };
 sapFinder = derive { name="sapFinder"; version="1.7.0"; sha256="1xg3scw5ijm1z2l4ha4ik52s97vr10plr9ifs9rdk2l6vh8na6kh"; depends=[pheatmap Rcpp rTANDEM]; };
 saps = derive { name="saps"; version="2.1.0"; sha256="0r6525n8ksxaa5dcvs9419bca1v369251psvwphfsdnfa4xg2n14"; depends=[piano reshape2 survcomp survival]; };
-savR = derive { name="savR"; version="1.7.3"; sha256="0jm5fc4zf4iqdq2qzzigal5r69mllzdx578ixxb9c3hxi55161mc"; depends=[ggplot2 gridExtra reshape2 scales XML]; };
+savR = derive { name="savR"; version="1.7.4"; sha256="1v0rzrh27yl0fx5gcwb04yq2vln3ngisg59614qmmdppc36qf5k6"; depends=[ggplot2 gridExtra reshape2 scales XML]; };
 scsR = derive { name="scsR"; version="1.5.0"; sha256="1n9clp1ldspxbrv4chihv1xhw2fmys13p884cmn037xhwv5b7j3r"; depends=[BiocGenerics Biostrings ggplot2 hash IRanges plyr RColorBrewer sqldf STRINGdb]; };
 segmentSeq = derive { name="segmentSeq"; version="2.3.1"; sha256="005b9a7rhhhcpkac8xyvl9lbzgwjbfpqr49wyn0i9j99v9zw1lfv"; depends=[baySeq GenomicRanges IRanges S4Vectors ShortRead]; };
 seq2pathway = derive { name="seq2pathway"; version="1.1.2"; sha256="1ghanxmfs99h8w2fxn6im3ml7brhhx131k7djbvsm695lvxgqm7a"; depends=[biomaRt GenomicRanges GSA nnet WGCNA]; };
@@ -970,7 +979,7 @@ seqLogo = derive { name="seqLogo"; version="1.35.0"; sha256="1fwg6v536kqgmmjfk3c
 seqPattern = derive { name="seqPattern"; version="1.1.1"; sha256="0lshbskj928c2n7gi6kf22id6rarmbby5ffrlxir0zihh7g7yfxz"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; };
 seqTools = derive { name="seqTools"; version="1.3.0"; sha256="17n8mz93jx7ggf6w3hm92r9mb224w2spwsyr85amny6x8xrxr7k7"; depends=[zlibbioc]; };
 seqbias = derive { name="seqbias"; version="1.17.0"; sha256="02zlj9nmwhjjmbfw499pf1szpair7ahbijvf6ci30z2g805l1qsk"; depends=[Biostrings GenomicRanges Rsamtools zlibbioc]; };
-seqplots = derive { name="seqplots"; version="1.5.1"; sha256="0xwhrln6bmsfv4rrnnr8mih2dvchxxv7kxdj9mwmwrnsh9ghk4qr"; depends=[Biostrings BSgenome Cairo class DBI digest DT fields GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges jsonlite kohonen plotrix reshape2 RSQLite rtracklayer S4Vectors shiny]; };
+seqplots = derive { name="seqplots"; version="1.6.0"; sha256="1mxllx6v87mk2vm5za97dhyfbwxdmmg1ly39vzacavldlc7hqkgc"; depends=[Biostrings BSgenome Cairo class DBI digest DT fields GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges jsonlite kohonen plotrix reshape2 RSQLite rtracklayer S4Vectors shiny]; };
 shinyMethyl = derive { name="shinyMethyl"; version="1.3.0"; sha256="03wfpaprrg6czkik0xxwq7hkwgdqm3z7frl6vpcq333chnv3nl5z"; depends=[BiocGenerics matrixStats minfi RColorBrewer shiny]; };
 shinyTANDEM = derive { name="shinyTANDEM"; version="1.7.0"; sha256="18fl4kjwhbxnnhifa9kxz6j73pri0kfw08mgrryzdpqbd2p7x70y"; depends=[mixtools rTANDEM shiny xtable]; };
 sigPathway = derive { name="sigPathway"; version="1.37.0"; sha256="1gkkpgibj3snpzs33c4k09b7q029s3jjch7slx7ljaqhdzldbpw4"; depends=[]; };
@@ -985,8 +994,8 @@ sizepower = derive { name="sizepower"; version="1.39.0"; sha256="1xw2r7m2hlg9r5i
 skewr = derive { name="skewr"; version="1.1.0"; sha256="1dd7vn4d7zffvmy1ic139qc5rp647wyw4jqlyy6kc2vil0w8368q"; depends=[IRanges methylumi minfi mixsmsn RColorBrewer wateRmelon]; };
 snapCGH = derive { name="snapCGH"; version="1.39.0"; sha256="11xdijl28mn7znjdv1qgj5z5hhf7xnnpg79pnxr5kj17b06w5509"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; };
 snm = derive { name="snm"; version="1.17.0"; sha256="0ckn29nymlml8ldxqq5la1h3bwm2h2c2zcr2sjs5plxl2fga4a0l"; depends=[corpcor lme4]; };
-snpStats = derive { name="snpStats"; version="1.19.0"; sha256="0m42vqjsqh2bjkn5vd5hm4q5r0pi9znxi2qzxxh0c9iai8wjjsca"; depends=[BiocGenerics Matrix survival zlibbioc]; };
-soGGi = derive { name="soGGi"; version="1.1.1"; sha256="17kq195xgsfq5fxvkyfxhkx1rcx4wp0115043snmxhp0vfpp36qv"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
+snpStats = derive { name="snpStats"; version="1.19.1"; sha256="1i4v737mrjjp8b24mihiv53ifgjcs7gaf9c4h2ling6gpasf39z8"; depends=[BiocGenerics Matrix survival zlibbioc]; };
+soGGi = derive { name="soGGi"; version="1.1.2"; sha256="0vqsdlnbdimz1y2q37ycddc3ifykbr9d0hsg47kqh5wjzgsrl4h7"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
 spade = derive { name="spade"; version="1.17.0"; sha256="02ba8ybgcldjmfsxywb0q7drm5nyhg6i72brvbrcgsq2ni0b7cpf"; depends=[Biobase flowCore igraph Rclusterpp]; };
 specL = derive { name="specL"; version="1.3.3"; sha256="17067na171pn55w7znyhrn9bcibjpk7spvdw5l6gzrr5slh49qg8"; depends=[DBI protViz Rcpp RSQLite seqinr]; };
 spikeLI = derive { name="spikeLI"; version="2.29.0"; sha256="1f7in8zcbdz9i1cqdhvdcjl6g71vhz9hgd8whc0x9nf12qa87l7p"; depends=[]; };
@@ -1007,7 +1016,7 @@ survcomp = derive { name="survcomp"; version="1.19.0"; sha256="1czy90l49f0c31kh9
 sva = derive { name="sva"; version="3.15.0"; sha256="0bskn3famgz24kjaz4lrrm94vw07g5d2103h9gh5qzhajdsc2d03"; depends=[genefilter mgcv]; };
 switchBox = derive { name="switchBox"; version="1.3.0"; sha256="0bnb1wqxl3rv8w5rm0jw3x22yy8q27j11hpqnd792fvsz8ssr5h1"; depends=[]; };
 synapter = derive { name="synapter"; version="1.11.0"; sha256="05gv788mx1bzizr07cg5cw98i4xm3qdh8hpys4xvr06as7q65h2g"; depends=[Biobase BiocParallel Biostrings cleaver hwriter knitr lattice MSnbase multtest qvalue RColorBrewer]; };
-systemPipeR = derive { name="systemPipeR"; version="1.3.4"; sha256="16sn8svmxz9yfhhdl3kwq3hgk80rmirz2g4c8z8i9dib3i8i3sia"; depends=[annotate BatchJobs BiocGenerics Biostrings DESeq2 edgeR GenomicRanges ggplot2 GOstats limma pheatmap rjson Rsamtools ShortRead SummarizedExperiment VariantAnnotation]; };
+systemPipeR = derive { name="systemPipeR"; version="1.3.11"; sha256="1ssxavb1dwfma6dvd6jp4vnh4xz1nns0d14ccrrslssnch8knn3g"; depends=[annotate BatchJobs BiocGenerics Biostrings DESeq2 edgeR GenomicRanges ggplot2 GOstats limma pheatmap rjson Rsamtools ShortRead SummarizedExperiment VariantAnnotation]; };
 tRanslatome = derive { name="tRanslatome"; version="1.7.0"; sha256="1pcr1ghwkmkpsbkqh85yninvgb2za2vdsnax5bjkdj60wfj0d5bc"; depends=[anota Biobase DESeq edgeR GOSemSim gplots Heatplus limma plotrix RankProd samr sigPathway topGO]; };
 ternarynet = derive { name="ternarynet"; version="1.13.0"; sha256="13pnzzlfzgkvqn323xhjvbaqzrk2fjq440ff9hjf09a53g14q7li"; depends=[igraph]; };
 tigre = derive { name="tigre"; version="1.23.0"; sha256="177phidn72rcghb4mqfcr2wbfx5pz2vdw6jh7ahnki7s5q6fkldl"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; };
@@ -1015,9 +1024,9 @@ tilingArray = derive { name="tilingArray"; version="1.47.0"; sha256="1l7ldbzzjxa
 timecourse = derive { name="timecourse"; version="1.41.0"; sha256="1jpbjh4dg71zyhy8vghzqvmkg17aw7azdbhn101j8rdfsf90i8mx"; depends=[Biobase limma marray MASS]; };
 tkWidgets = derive { name="tkWidgets"; version="1.47.0"; sha256="08vhxl7bdhnx0vk8pkm4bxjy9jvg42wy8nhlp04fyjkylfs5d58r"; depends=[DynDoc widgetTools]; };
 topGO = derive { name="topGO"; version="2.21.0"; sha256="0hhglb4zqbjwqywn37h3klz7qgkypl2zmv1afibxjn70xc6wxq46"; depends=[AnnotationDbi Biobase BiocGenerics graph lattice SparseM]; };
-trackViewer = derive { name="trackViewer"; version="1.5.1"; sha256="16xjh6k1v1pp29g2x2n8ywaapf7wgj2l4klmmspa3f8gkzlmxgwz"; depends=[GenomicAlignments GenomicFeatures GenomicRanges Gviz gWidgetstcltk pbapply Rsamtools rtracklayer scales]; };
+trackViewer = derive { name="trackViewer"; version="1.5.2"; sha256="0kr6mkim32khr5zqm7wzrv03g9fvn4imxr0b7h8jl7sl896hv5ks"; depends=[GenomicAlignments GenomicFeatures GenomicRanges Gviz gWidgetstcltk pbapply Rsamtools rtracklayer scales]; };
 tracktables = derive { name="tracktables"; version="1.3.0"; sha256="125z9b0rjvrrbg91bdzqrf3rrw0aajivpyxd1m9k1gcs6jmsaaj3"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; };
-triform = derive { name="triform"; version="1.11.2"; sha256="11vsg3ki9dyl8vpi1q1p0cilhnvz076lk55w6ld4k53sp2h3q0r4"; depends=[BiocGenerics IRanges yaml]; };
+triform = derive { name="triform"; version="1.11.3"; sha256="0j8arzd9zbd37kzz1ndr6ljzz21h7bi33p0iqzy83l5ifidd4kaj"; depends=[BiocGenerics IRanges yaml]; };
 trigger = derive { name="trigger"; version="1.15.0"; sha256="1gsvp2rvry8pg9wfl9rggjfjxd0dcq3lrfkygfsl4jqcwnankpvc"; depends=[corpcor qtl qvalue sva]; };
 trio = derive { name="trio"; version="3.7.1"; sha256="1g3q1pvqq2kp1vck9c7sj000inw5b7q0wvd14yr8096mm6ax8zka"; depends=[]; };
 triplex = derive { name="triplex"; version="1.9.0"; sha256="0a7pyazg2vmk8229x6lvvxcvplj07drqrlvn9cra5ckqhflm3san"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; };
@@ -1027,7 +1036,7 @@ twilight = derive { name="twilight"; version="1.45.0"; sha256="0dzgapk34jzxhdadr
 unifiedWMWqPCR = derive { name="unifiedWMWqPCR"; version="1.5.0"; sha256="055yvgwqjh91cf8d2hsacnbzq2z9c911cy3qd206azqlr6qyjiip"; depends=[BiocGenerics HTqPCR]; };
 vbmp = derive { name="vbmp"; version="1.37.0"; sha256="1i4akvqrwj1r0ahi4vjxl7q780sa5bryj3rd2c5wg0ifd5l95h6s"; depends=[]; };
 viper = derive { name="viper"; version="1.5.1"; sha256="0494601adg93i5gwam73x4x3m7vfg25xly6v2gj4aclaq9v6fpyf"; depends=[Biobase e1071 KernSmooth mixtools]; };
-vsn = derive { name="vsn"; version="3.37.1"; sha256="0qya4csz1vhvshnzrml6d9fbxqrdp2ckh4f38izcbj53y3hhilf9"; depends=[affy Biobase lattice limma]; };
+vsn = derive { name="vsn"; version="3.37.3"; sha256="09mzv7l5j20sx14m63q9ycpacrh2zayywiyckglfgndpc8v9wp08"; depends=[affy Biobase ggplot2 hexbin lattice limma]; };
 vtpnet = derive { name="vtpnet"; version="0.9.0"; sha256="0gbs4pdwy88pjwsn3r2yspnfscz127awhlwym6g1lk8sxkb4mjxc"; depends=[doParallel foreach GenomicRanges graph gwascat]; };
 wateRmelon = derive { name="wateRmelon"; version="1.9.0"; sha256="1lgadzv28j5qqqqsrjzakxmyj1q9j0hps3waa2nn9r7dq4cvallh"; depends=[limma lumi matrixStats methylumi ROC]; };
 wavClusteR = derive { name="wavClusteR"; version="2.3.1"; sha256="0cfh1jiyzs1fijp8p3f4vysvrm7xhrriqdyjrms81pldka4kfv6y"; depends=[Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer seqinr stringr wmtsa]; };
diff --git a/pkgs/development/r-modules/cran-packages.nix b/pkgs/development/r-modules/cran-packages.nix
index 7ccca09742b6..2f62ede96cfd 100644
--- a/pkgs/development/r-modules/cran-packages.nix
+++ b/pkgs/development/r-modules/cran-packages.nix
@@ -5,10 +5,8 @@
 
 { self, derive }: with self; {
 A3 = derive { name="A3"; version="0.9.2"; sha256="01s7znhph2mr3snpscci3y7nbcisa6kg6hy7im3742r6ah0z3jv7"; depends=[pbapply xtable]; };
-ABCExtremes = derive { name="ABCExtremes"; version="1.0"; sha256="032bc9a6cxy4war95n8v4vaax3q96k2wryjbcipi3z55b2l8hdny"; depends=[combinat SpatialExtremes]; };
 ABCanalysis = derive { name="ABCanalysis"; version="1.0.2"; sha256="1lgf9nhh5a8m4m48l6gd3d3avjqcplp40jzpb7d7y5vgj8cj1bw6"; depends=[Hmisc plotrix]; };
 ABCoptim = derive { name="ABCoptim"; version="0.13.11"; sha256="1j2pbfl5g9x71gq9f7vg6wznsds8sn8dj3q2h5fhjcv58di3gjhl"; depends=[]; };
-ABCp2 = derive { name="ABCp2"; version="1.1"; sha256="0s0lbwlc8nycm7b8vx0v01f8dmy91r1zqcj9zgrlj7dnpg4cpkml"; depends=[MASS]; };
 ACCLMA = derive { name="ACCLMA"; version="1.0"; sha256="1na27sp18fq12gp6vxgqw1ffsz2yi1d8xvrxbrzx5g1kqxrayy0v"; depends=[]; };
 ACD = derive { name="ACD"; version="1.5.3"; sha256="1a67bi3hklq8nlc50r0qnyr4k7m9kpvijy8sqqpm54by5hsysfd6"; depends=[]; };
 ACNE = derive { name="ACNE"; version="0.8.0"; sha256="0ps38lljzm2aszqf8fhh74zbdxh46kypmybkw5w7xaf9nv5kcq8g"; depends=[aroma_affymetrix aroma_core MASS matrixStats R_filesets R_methodsS3 R_oo R_utils]; };
@@ -20,7 +18,8 @@ ADPclust = derive { name="ADPclust"; version="0.6.3"; sha256="0lr4zkjhqr9azqxnxp
 AER = derive { name="AER"; version="1.2-4"; sha256="0cfhnh6ijwvbywk6falfq852jgx969v35j2l1q3cghwj9yggapbh"; depends=[car Formula lmtest sandwich survival zoo]; };
 AFLPsim = derive { name="AFLPsim"; version="0.3-4"; sha256="0xqp1d3cn8rcrsx0yipqh0k4xynv446acxpcammbflsz01xsgx9v"; depends=[adegenet introgress]; };
 AGD = derive { name="AGD"; version="0.35"; sha256="1dk8m3zqvapwhz0677d3b2cbrin14p9adn5annzgjrxgw7ms4mg0"; depends=[gamlss gamlss_dist]; };
-AGSDest = derive { name="AGSDest"; version="2.2"; sha256="00kf786i72bc4a80qswq1iazwqi709pxvzadgfih511plgir6ik2"; depends=[ldbounds]; };
+AGSDest = derive { name="AGSDest"; version="2.3"; sha256="1g8z7ba70zs4i8cb48iwf4iy1q1l76cpiixiac8fixjf1c7a9hxz"; depends=[ldbounds]; };
+AHR = derive { name="AHR"; version="1.2"; sha256="150bj83158l1rks2zcw534py2crbxjgiw54sb0rzvgxwbyh8yz5g"; depends=[etm MASS Rcpp RcppArmadillo survival]; };
 AICcmodavg = derive { name="AICcmodavg"; version="2.0-3"; sha256="1a9jbf3vd77hsf98smjgqchhkc9z8qqp12c1mflln3l0pxx0vk8q"; depends=[lattice MASS Matrix nlme unmarked VGAM xtable]; };
 AID = derive { name="AID"; version="1.5"; sha256="0fpgq2ahl0mdj0sb0p39z2ksslsiwm3hma8d09jmggi3yjbrgqq7"; depends=[MASS nortest tseries]; };
 AIM = derive { name="AIM"; version="1.01"; sha256="11lkfilxk265a7jkc1wq5xlgxa56xhg302f1q9xb7gmjnzdigb21"; depends=[survival]; };
@@ -41,13 +40,13 @@ ARPobservation = derive { name="ARPobservation"; version="1.1"; sha256="1cdhn11j
 ARTIVA = derive { name="ARTIVA"; version="1.2.3"; sha256="1jdvsslc8parz7wibcv51fx62brl2mc6i482hz43j1npsms2z1hl"; depends=[gplots igraph MASS]; };
 ARTP = derive { name="ARTP"; version="2.0.4"; sha256="1f6ay9lyaqsc33b0larb8v6imp5adaycya84wif2sg32rv4gx3yl"; depends=[]; };
 ARTool = derive { name="ARTool"; version="0.9.5"; sha256="1wfan4v3498libqgjdgn4l4ihf1khp3smj0lmyxd7vb4iaawlzci"; depends=[car lme4 pbkrtest plyr]; };
-ASMap = derive { name="ASMap"; version="0.4-1"; sha256="0nslmzhf99vl1zkp702xgcrd36xvis45yb5b0hx0mvf4dfv233lm"; depends=[fields gtools lattice qtl]; };
+ASMap = derive { name="ASMap"; version="0.4-4"; sha256="0fgycpnb2qr1j37f7avg75nij4b6h8bsmfl574cjqs6gmchkwfi0"; depends=[fields gtools lattice qtl]; };
 ASPBay = derive { name="ASPBay"; version="1.2"; sha256="0b1qpyvmj7z10ixrmdxp42bj9s72c1l9rihzmv9p58f12a5aznjz"; depends=[hexbin Rcpp RcppArmadillo]; };
 ATE = derive { name="ATE"; version="0.2.0"; sha256="1i46ivb7q61kq11z9v1rlnwad914nsdjcz9bagqx17vjk160mc0a"; depends=[]; };
 ATmet = derive { name="ATmet"; version="1.2"; sha256="047ibxxf5si45zw22zy8a1kpj36q0pd3bsmxwvn0dhf4h65ah0zz"; depends=[DiceDesign lhs metRology msm sensitivity]; };
 AUC = derive { name="AUC"; version="0.3.0"; sha256="0ripcib2qz0m7rgr1kiz68nx8f6p408l1ww7j78ljqik7p3g41g7"; depends=[]; };
 AUCRF = derive { name="AUCRF"; version="1.1"; sha256="00d7jcg2dyvf7sc9w7vxxd85m7nsbcmfqsavrv236vxfpfc9yn7i"; depends=[randomForest]; };
-AcceptanceSampling = derive { name="AcceptanceSampling"; version="1.0-3"; sha256="1camxmvz8prkvpf3d3rc07bnfphakwdlickqlr4sgzrs4k27rr4f"; depends=[]; };
+AcceptanceSampling = derive { name="AcceptanceSampling"; version="1.0-4"; sha256="0nvbh4cx0vcsqzs7j6vs6pc6yxb4i0fbjfajdnq6fvnv12m9sz41"; depends=[]; };
 Actigraphy = derive { name="Actigraphy"; version="1.2"; sha256="02xxmzjqym46q0fzddmy29i8la9knrna3b46y8849nmbpqvmp3qn"; depends=[fda lattice SDMTools]; };
 ActuDistns = derive { name="ActuDistns"; version="3.0"; sha256="04rff9czcgac80clpv32a1dl0jbyvfsa7wqxyywgk99w672x50i2"; depends=[actuar hypergeo reliaR]; };
 AdMit = derive { name="AdMit"; version="2.0.1"; sha256="0bqzq2pf5449qyr8ff5d3sq0lbsph29ppv6zzf1rbjz06sc5d6ff"; depends=[mvtnorm]; };
@@ -80,6 +79,7 @@ ArfimaMLM = derive { name="ArfimaMLM"; version="1.3"; sha256="0s5igf703zzvagsbdx
 ArgumentCheck = derive { name="ArgumentCheck"; version="0.9.0"; sha256="1gyc6bx6sfp7k8cp43l6fic4rfn729h6kl5zqs3ypf4425s7jm3f"; depends=[]; };
 ArrayBin = derive { name="ArrayBin"; version="0.2"; sha256="0jlhcv2d7pmqi32w71nz063ri1yj4i4isr3msnw7ckzvi9r42jwm"; depends=[SAGx]; };
 AssetPricing = derive { name="AssetPricing"; version="1.0-0"; sha256="12v8hmmknkp472x406zgzwjp7x8sc90byc3s3dvmwd5qhryxkkix"; depends=[deSolve polynom]; };
+AssocTests = derive { name="AssocTests"; version="0.0-2"; sha256="1sba4b3rrk3ki95z0xs8aj8pcikczn7c66m00ziivsdi8iy10gzg"; depends=[cluster combinat fExtremes mvtnorm]; };
 AssotesteR = derive { name="AssotesteR"; version="0.1-10"; sha256="0aysilg79vprcyjirqz6c5s1ry1ia92xik3l38qrw1gf3vfli9cw"; depends=[mvtnorm]; };
 AsynchLong = derive { name="AsynchLong"; version="1.0"; sha256="097d0zvzjkz3v32qhxdir0xv7kbjkhzy6q5k54w8l4fa2632j3mk"; depends=[]; };
 AtelieR = derive { name="AtelieR"; version="0.24"; sha256="0yialpmbsbx70gvps4r58xg9wvqcril8j8yd61lkkmz4b3195zai"; depends=[cairoDevice gWidgetsRGtk2 partitions proto]; };
@@ -94,7 +94,7 @@ BAMMtools = derive { name="BAMMtools"; version="2.0.5"; sha256="1xrhif8872w5rwib
 BANFF = derive { name="BANFF"; version="0.3"; sha256="0z7hwplp12m8sypkndjkjkmanbh67h47k8j9wm60qg6nnyqry9np"; depends=[coda doParallel DPpackage foreach igraph mclust network pscl tmvtnorm]; };
 BANOVA = derive { name="BANOVA"; version="0.2"; sha256="1zgn9wxh4c89rris58hhj5fh37mmy8wjvligr02id7a1pcw177m3"; depends=[coda rjags runjags]; };
 BASIX = derive { name="BASIX"; version="1.1"; sha256="18dkvv1iwskfnlpl6xridcgqpalbbpm2616mvc3hfrc0b26v01id"; depends=[]; };
-BAT = derive { name="BAT"; version="1.3.0"; sha256="0a8l3hzlgxyp604dg20qm9hvxl97dyh1lm0hj85p6s6nz0qwi8jy"; depends=[nls2 spatstat vegan]; };
+BAT = derive { name="BAT"; version="1.3.1"; sha256="16zc1pzx9x8xiqwm2c8zm6n6ry1hkc5dy9s4630as7f1cprq0k5v"; depends=[nls2 spatstat vegan]; };
 BAYSTAR = derive { name="BAYSTAR"; version="0.2-9"; sha256="0crillww1f1jvhjw639sf09lpc3wpzd69milah143gk9zlrkhmz2"; depends=[coda mvtnorm]; };
 BB = derive { name="BB"; version="2014.10-1"; sha256="1lig3vxhyxy8cnic5bczms8pajmdvwr2ijad1rkdndpglving7x0"; depends=[quadprog]; };
 BBEST = derive { name="BBEST"; version="0.1-4"; sha256="0yqsz97lljlydhphiy0fb7vwbqxpjzn5v0v665c39dlprxv3jg3b"; depends=[DEoptim ggplot2 reshape2 shiny wmtsa]; };
@@ -106,38 +106,38 @@ BCBCSF = derive { name="BCBCSF"; version="1.0-0"; sha256="1ag8wz8a9vh1x4jgppimgc
 BCDating = derive { name="BCDating"; version="0.9.7"; sha256="0z3a95sc481p0n33mhg7qlsf1jynbm1vbfds0n03bsjrwvqkzpb2"; depends=[]; };
 BCE = derive { name="BCE"; version="2.1"; sha256="0dqp08pbq7r88yhvlwgzzk9dcdln7awlliy5mfq18j5jhiy7axiz"; depends=[FME limSolve Matrix]; };
 BCEA = derive { name="BCEA"; version="2.1-1"; sha256="1j2zb2icv5b6kwgbjzvidbzvciag89227ina6qcb2m4g6spyxcrm"; depends=[]; };
+BCEE = derive { name="BCEE"; version="1.0"; sha256="0c1fj263qfmg0vba2xf9bkchymcp8zjkwyjysgkkrdflxc4qskdi"; depends=[BMA]; };
 BCEs0 = derive { name="BCEs0"; version="1.1"; sha256="0q63bkmk0kk9p5d3xb0f5srzfrbr743isyw4v2h9ch5yyxizcizb"; depends=[]; };
 BCRA = derive { name="BCRA"; version="1.0"; sha256="1bbxh1kf35h31c4k565kk6grdhp5pnn8vr3nr6vnp32dp4pc05zh"; depends=[]; };
 BDgraph = derive { name="BDgraph"; version="2.19"; sha256="1z1ah2d5mjdfqgi00p2jlslhfd256ksijg3nk307594k2c8psqfp"; depends=[igraph Matrix]; };
 BEANSP = derive { name="BEANSP"; version="1.0"; sha256="0xcb81pk3iidb3dz9l4hm6cwx8hrbg5qz0sfi59yx2f7nsazr4xk"; depends=[]; };
 BEDASSLE = derive { name="BEDASSLE"; version="1.5"; sha256="1bz3lr0waly9vj9adwhmgs3lq7zjdkcbvm3y9rnn72qlrwmv5fbn"; depends=[emdbook MASS matrixcalc]; };
 BEQI2 = derive { name="BEQI2"; version="2.0-0"; sha256="19q29kkwww5hziffkm2yx7n4cpfcsyh0z4mljdcnjkwfp732sjig"; depends=[jsonlite knitr markdown plyr reshape2 xtable]; };
-BEST = derive { name="BEST"; version="0.2.2"; sha256="160lvrd0zjm1lr8llra6lyz3qsmqhn3bpdlmwingwfimbpb754rz"; depends=[coda rjags]; };
+BEST = derive { name="BEST"; version="0.3.0"; sha256="0sl681ax77nv9a87dhr58yis4x4r7s0m3mywxid1z876zdglsxsp"; depends=[coda jagsUI]; };
 BGLR = derive { name="BGLR"; version="1.0.4"; sha256="1bvk8iifvrcvnb0f1k3v9xxajljsz79ck95191p8alnda64cz0zf"; depends=[]; };
 BGPhazard = derive { name="BGPhazard"; version="1.2.2"; sha256="1v89pjigrjkin9vsf6sa0qhwxvn1a3dy2gqwq3sd9v6y0hrld6ng"; depends=[survival]; };
 BGSIMD = derive { name="BGSIMD"; version="1.0"; sha256="0xkr56z8l72wps7faqi5pna1nzalc3qj09jvd3v9zy8s7zf5r7w4"; depends=[]; };
 BH = derive { name="BH"; version="1.58.0-1"; sha256="17rnwyw9ib2pvm60iixzkbz7ff4fslpifp1nlx4czp42hy67kqpf"; depends=[]; };
-BHH2 = derive { name="BHH2"; version="2012.04-0"; sha256="10ixvjpkqamlddrndpnw5gsdm4gdhp693jdvc0f774ngmf32rbaa"; depends=[]; };
-BHMSMAfMRI = derive { name="BHMSMAfMRI"; version="1.0"; sha256="0j5ivknsr441clgm0b95f2rz4pr29ixvw3dgsi8nb0ffh52dgz7q"; depends=[AnalyzeFMRI fmri wavethresh]; };
+BHH2 = derive { name="BHH2"; version="2015.06.25"; sha256="19c8qjfvg4f3zlrqvrsdmc776f81ghv8w0l3bnbpdbyz7fivc1qw"; depends=[]; };
 BIFIEsurvey = derive { name="BIFIEsurvey"; version="1.2-6"; sha256="1fin5dr1xxr617i4ysfx39gaw6ygbcm4h7j1l38kqnfz18hn6xsq"; depends=[miceadds mitools Rcpp RcppArmadillo TAM]; };
 BIGDAWG = derive { name="BIGDAWG"; version="1.1"; sha256="0rgk2w7d8qq2dahfmiv81v1ydm1by6nabjzjb6iabfk0b8bnwqy2"; depends=[haplo_stats XML]; };
 BIOM_utils = derive { name="BIOM.utils"; version="0.9"; sha256="0xckhdvf15a62awfk9rjyqbi6rm7p4awxz7vg2m7bqiqzdll80p7"; depends=[]; };
 BIPOD = derive { name="BIPOD"; version="0.2.1"; sha256="04r58gzk3hldbn115j9ik4bclzz5xb2i3x6b90m2w9sq7ymn3zg1"; depends=[Rcpp RcppArmadillo]; };
 BLCOP = derive { name="BLCOP"; version="0.3.1"; sha256="1qfkljw5b1k4b5jd08hw6dsmvgr7vg3kjyib5s13q0mkxvclasym"; depends=[fBasics fMultivar fPortfolio MASS quadprog RUnit timeSeries]; };
 BLR = derive { name="BLR"; version="1.4"; sha256="0wy3c8nnzkdhwb5s1ygdid47hpdx72ryim36mnicrydy0msjivja"; depends=[SuppDists]; };
-BMA = derive { name="BMA"; version="3.18.1"; sha256="0ppcjjcrjrs18lp55hrs0ad7x052v57wd0zdfmvyydlsjbgnsx1p"; depends=[inline leaps robustbase survival]; };
+BMA = derive { name="BMA"; version="3.18.4"; sha256="1lqcvr6p0y2b3n099j6rqvg5sz9i185qh9fcmm83p7czdjwn9yg9"; depends=[inline leaps robustbase rrcov survival]; };
 BMN = derive { name="BMN"; version="1.02"; sha256="12gyq01cn6a9ixqgki1ihx5jrp2gw6jdj7q210rb12xlvj3p6x7w"; depends=[]; };
 BMS = derive { name="BMS"; version="0.3.3"; sha256="1yj9vi8jvhkwpcjkclf0zbah0dayridklpj65ay6r18fyf4crnd2"; depends=[]; };
 BMhyd = derive { name="BMhyd"; version="1.2-2"; sha256="09gb1pq9y3gq9avpaqrlxdsm9iqsxpbnr0bg2mw1vkhc0d5z8zv7"; depends=[corpcor numDeriv]; };
 BNDataGenerator = derive { name="BNDataGenerator"; version="1.0"; sha256="17zi83jhpn9ygavkpr9haffvd4622sca18jzzxxxmfq0ilrj201g"; depends=[]; };
 BNPTSclust = derive { name="BNPTSclust"; version="1.1"; sha256="1zmxwg6zn3nqqm1sw2n4pvq47mv7ygb4lf1c6yhn3xaf1rqmf26s"; depends=[MASS mvtnorm]; };
 BNPdensity = derive { name="BNPdensity"; version="2015.5"; sha256="0jgdc9dayc57y77bb2yjcn1pb5ahrvbrsmyjkhyl4365sn5njzl8"; depends=[]; };
-BNSP = derive { name="BNSP"; version="1.0.3"; sha256="1q7nxl1lx57dzb5yfpb0966ylyl15x22y9r78r6pxrprrbsnv931"; depends=[]; };
+BNSP = derive { name="BNSP"; version="1.0.5"; sha256="0iyrmrpnx32akcfvd43jh74457l56n5n4pnlyqi9v3cjp4n95fds"; depends=[]; };
 BOG = derive { name="BOG"; version="2.0"; sha256="0lz5af813b67hfl4hzcydn58sjhgn5706n2h44g488bks928k940"; depends=[DIME hash]; };
 BOIN = derive { name="BOIN"; version="1.1"; sha256="1ffr6w9ml0mkffgg1vds8fmf8ww7rs375pxk2dqv9nlb9061m97r"; depends=[]; };
 BRugs = derive { name="BRugs"; version="0.8-4"; sha256="0bd5m4nfj25bhjy0d96kna50h5a5a2mdxrl21c1kvxmiwxcx4wrs"; depends=[coda]; };
 BSDA = derive { name="BSDA"; version="1.01"; sha256="06mgmwwh56bj27wdya8ln9mr3v5gb6fcca7v9s256k64i19z12yi"; depends=[e1071 lattice]; };
-BSGS = derive { name="BSGS"; version="1.0"; sha256="11r7bx9ax84iv3gam02p1hg174ni3d3gv6yj64n0gp2gaj438hv7"; depends=[MASS plyr pscl]; };
+BSGS = derive { name="BSGS"; version="2.0"; sha256="08m8g4zbsp55msqbic4f17lcry07mdn0f5a61zdcy2msn2ihzzf9"; depends=[batchmeans MASS plyr pscl]; };
 BSGW = derive { name="BSGW"; version="0.9"; sha256="0df5d0d0kfvwavxbxra36jjs9044q1szq1xm37dvh4wfvvv6igmb"; depends=[survival]; };
 BSSasymp = derive { name="BSSasymp"; version="1.1-0"; sha256="0z3abgvbpmwgzb6b6r5ys3msy97lfdg81p8d19c83aaa6hrngggn"; depends=[fICA JADE]; };
 BSagri = derive { name="BSagri"; version="0.1-8"; sha256="148pr4lkgdi4bwc9lavgj356nh240iazz28xklq14rw4gzhmz2k4"; depends=[boot gamlss MCPAN mratios multcomp mvtnorm]; };
@@ -148,6 +148,7 @@ BVS = derive { name="BVS"; version="4.12.1"; sha256="111g61bpwh80v6gy44q087swcrn
 BaBooN = derive { name="BaBooN"; version="0.2-0"; sha256="145q2kabjks2ql3m48sfjis5y35l8rcqnr5s176viv9yhfafn351"; depends=[coda Hmisc MASS nnet Rcpp RcppArmadillo]; };
 BaM = derive { name="BaM"; version="0.99"; sha256="1q04va2s876ydlmaalx63r520pfx1qzpjg6hbnl9pvn86b5grnf4"; depends=[bayesm coda foreign MASS mice nnet survival]; };
 BaSTA = derive { name="BaSTA"; version="1.9.3"; sha256="1jfki5lnsvd6fjrld2qp179lyzli61pi2308lkkl1h6vgp11zp2v"; depends=[msm]; };
+Bagidis = derive { name="Bagidis"; version="1.0"; sha256="1prdbkc0qgzkkrkhp43pjyg35q9ivngk8wa4a7khlnfsj21jaraf"; depends=[abind]; };
 BalancedSampling = derive { name="BalancedSampling"; version="1.4"; sha256="0l8jxszd0j27kb58xrn7lvf52mhifqjd1w42cp4kdiax8c6s7421"; depends=[Rcpp]; };
 BatchExperiments = derive { name="BatchExperiments"; version="1.4.1"; sha256="0fg7p0q6avc0kcwcd3z4q3akrr2mkrx2yf9zcd6hhz22l3x4aphz"; depends=[BatchJobs BBmisc checkmate DBI plyr RSQLite]; };
 BatchJobs = derive { name="BatchJobs"; version="1.6"; sha256="1kb99024jih5bycc226bl4jyvbbl1sg72q3m2wnlshl7s8p6vva0"; depends=[BBmisc brew checkmate DBI digest fail RSQLite sendmailR stringr]; };
@@ -157,7 +158,6 @@ BayHaz = derive { name="BayHaz"; version="0.1-3"; sha256="08ilghlkgyma5758yw7mdg
 BaySIC = derive { name="BaySIC"; version="1.0"; sha256="023ji6q1nvksmhp3ny8ad39xxccc0a1rv9iaiaagwavgzzc0pjd9"; depends=[fields poibin rjags]; };
 BayesBridge = derive { name="BayesBridge"; version="0.6"; sha256="1j03m465pwq0lhbrfvddjglrzs6px7bc89yvfzj776amm7myqd0l"; depends=[]; };
 BayesCR = derive { name="BayesCR"; version="2.0"; sha256="0cafind5vz81ryw1c7324hyfc6922fsxmjnvddb4mrhis54id2r4"; depends=[mnormt mvtnorm Rlab rootSolve truncdist]; };
-BayesComm = derive { name="BayesComm"; version="0.1-0"; sha256="17hnq4z451g2j3p73awllihhwsdy3grh6ki3qy9bkr064wvzbvcj"; depends=[coda Rcpp RcppArmadillo]; };
 BayesDA = derive { name="BayesDA"; version="2012.04-1"; sha256="0fp27cmhw8dsxr4mc1flm6qh907476kph8ch2889g9p31xm1psjc"; depends=[]; };
 BayesFactor = derive { name="BayesFactor"; version="0.9.11-1"; sha256="0vq656q38vlf0ba8g23psk8as1y48y6s8yrvqrppbjx5d9wlm9wv"; depends=[coda gtools Matrix MatrixModels mvtnorm pbapply Rcpp RcppEigen stringr]; };
 BayesGESM = derive { name="BayesGESM"; version="1.4"; sha256="0qw2byb48f67461m1k8a1rqh6a0c3zq1rc4ni9xzxv8dih4wkq0f"; depends=[Formula GIGrvg normalp]; };
@@ -181,7 +181,7 @@ BaylorEdPsych = derive { name="BaylorEdPsych"; version="0.5"; sha256="1kq6nvzdqw
 BcDiag = derive { name="BcDiag"; version="1.0.8"; sha256="1x9rkr96dgxp88z9qaw72ikcdmdlxnj8vjn3bfv0q27sfyxwb3a5"; depends=[fabia]; };
 Bchron = derive { name="Bchron"; version="4.1.1"; sha256="0dnfz7xpmbygyarh9ai9x3xfsqiizi0zhnxm8bmkvqyb8h7zpghb"; depends=[coda ellipse hdrcde inline MASS mclust]; };
 Bclim = derive { name="Bclim"; version="2.3.1"; sha256="160c9v83bpik73yjj45lr8sdgl8v4ymlkqw424ncc3lficyhvfjg"; depends=[hdrcde MASS mclust statmod]; };
-Benchmarking = derive { name="Benchmarking"; version="0.24"; sha256="18gx8cwip1c03p37apyr9z89p117bz439vfgx91gxbbg1scc8bfp"; depends=[lpSolveAPI ucminf]; };
+Benchmarking = derive { name="Benchmarking"; version="0.26"; sha256="00w7a16lhra6rjylyj26q67mvgbc3wa27a2wmiwjz5yh7wdnh193"; depends=[lpSolveAPI ucminf]; };
 BenfordTests = derive { name="BenfordTests"; version="1.1.1"; sha256="12xzc4gq4h7p18ypbkybrzjj2qh71rgd7nzznij36yv7n6h21mlw"; depends=[]; };
 Bergm = derive { name="Bergm"; version="3.0.1"; sha256="1ngxqpagf8snnwdm82bg8yxbf1zpzd99g32fhw9l4gjx77kpkhl2"; depends=[coda ergm mvtnorm network]; };
 BerlinData = derive { name="BerlinData"; version="1.0.1"; sha256="1shhx4pisi139sc0siawa7gp9psfgxm58qijg5m65nihv7spki75"; depends=[rjson stringr XML]; };
@@ -200,7 +200,7 @@ BioGeoBEARS = derive { name="BioGeoBEARS"; version="0.2.1"; sha256="0wyddc5ma47l
 BioMark = derive { name="BioMark"; version="0.4.2"; sha256="17r4q2migmdk2vqfbr69q07cgdzwpjgs3ijmnm42srs5d3brw8cr"; depends=[glmnet MASS pls st]; };
 BioPhysConnectoR = derive { name="BioPhysConnectoR"; version="1.6-10"; sha256="1cc22knlvbvwsrz2a7syk2ampm1ljc44ykv5wf0szhnh75pxg13l"; depends=[matrixcalc snow]; };
 BioStatR = derive { name="BioStatR"; version="2.0.0"; sha256="1k3z337lj8r06xgrqgi5h67hhkz2s5hggj6dhcciq26i1nzafsw6"; depends=[ggplot2]; };
-Biodem = derive { name="Biodem"; version="0.3"; sha256="0wfyypr46awki2nrvhcjwacmaxrr2wvhdv9hddnf10msssflvshc"; depends=[]; };
+Biodem = derive { name="Biodem"; version="0.4"; sha256="0k0p4s21089wg3r3pvyy9cxsdf4ijdl598gmxynbzvwpr670qnsh"; depends=[]; };
 BiodiversityR = derive { name="BiodiversityR"; version="2.5-2"; sha256="0l23nlibv7wjmkv1jnssaab3iwm2i5wrkzjji2x9rr5131aj82gn"; depends=[Rcmdr vegan]; };
 Biograph = derive { name="Biograph"; version="2.0.4"; sha256="1mik5yvbi28xnyzha8p3xjaa064x29wgn18yx766wha7djxxr353"; depends=[Epi etm ggplot2 lubridate msm mstate mvna plyr reshape survival]; };
 BivarP = derive { name="BivarP"; version="1.0"; sha256="08f7sphylaj3kximy1avaf29hxj2n800adsnssh01p9bcxnzb2i4"; depends=[copula dfoptim survival]; };
@@ -218,20 +218,18 @@ BoomSpikeSlab = derive { name="BoomSpikeSlab"; version="0.5.2"; sha256="0n7kf0nk
 BootPR = derive { name="BootPR"; version="0.60"; sha256="03zw7hz4gyhp6iq3sb03pc5k2fhvrpkspzi22zks25s1l7mq51bi"; depends=[]; };
 Boruta = derive { name="Boruta"; version="4.0.0"; sha256="1r7bl4ab6swhks9cijhqn9gdhp2vjfhwb65fi5rzz0yvzxx97xi8"; depends=[randomForest rFerns]; };
 BradleyTerry2 = derive { name="BradleyTerry2"; version="1.0-6"; sha256="1080q7fw4yfl2y0jh3w2xz342i5yhhhavq40i3902bsmjj8g531d"; depends=[brglm gtools lme4]; };
-BrailleR = derive { name="BrailleR"; version="0.20"; sha256="1cfg5jfhal77n1pmwcj0awhnprqw6bha7q7z3s2m3q4g1ar49shv"; depends=[gridGraphics gridSVG knitr moments nortest rmarkdown xtable]; };
+BrailleR = derive { name="BrailleR"; version="0.22.0"; sha256="13bwy6mcmh57iznm600r34mz757i9dy6f2nb3a2jw1xvk5zsnasz"; depends=[devtools extrafont gridGraphics gridSVG knitr moments nortest rmarkdown xtable]; };
 Brobdingnag = derive { name="Brobdingnag"; version="1.2-4"; sha256="1saxa492f32f511vw0ys55z3kgyzhswxkylw9k9ccl87zgbszf3a"; depends=[]; };
-Brq = derive { name="Brq"; version="1.0"; sha256="0m01qw0mh9za1gx1vkbyvwny4k5fvmvs9dbp0504q8jqfqf4l1vj"; depends=[quantreg truncnorm]; };
 BsMD = derive { name="BsMD"; version="2013.0718"; sha256="1yvazqlbmm221r7nkhrhi309gkk6vx7ji5xlvf07klya2zg20gcj"; depends=[]; };
 BurStFin = derive { name="BurStFin"; version="1.02"; sha256="16w2s0bg73swdps9r0i8lwvf1najiqyx7w7f91xrsfhmnqkkjzka"; depends=[]; };
 BurStMisc = derive { name="BurStMisc"; version="1.00"; sha256="0718a1p7iiqkfhhmnzxggc6hd8sm847n1qh7rfbdl8b0k0bgvnj0"; depends=[]; };
 C50 = derive { name="C50"; version="0.1.0-24"; sha256="17ay0rbm2cg2s27mh09xg0knk7idx6f761sc849m41vsc6pfhzk1"; depends=[partykit]; };
 CADFtest = derive { name="CADFtest"; version="0.3-2"; sha256="00nsnzgjwkif7mbrw7msswjxhi9aysjdx3qg3i4mdmj1rmp7c4dc"; depends=[dynlm sandwich tseries urca]; };
 CALIBERrfimpute = derive { name="CALIBERrfimpute"; version="0.1-6"; sha256="036nwnday098mawc9qlgl3jjjcdjnja1immg6xkq27hvv2xfbz82"; depends=[mice mvtnorm randomForest]; };
-CALINE3 = derive { name="CALINE3"; version="1.0-2"; sha256="07w1kb7wqdi1qslpvpmqcmq6da4h7sgwv3aih4brdprym61c3rkm"; depends=[]; };
 CAM = derive { name="CAM"; version="1.0"; sha256="07mmrz6j8cm6zgaw2zcxgkxb7abd651kb80526r271snjgvpr5bl"; depends=[glmnet Matrix mboost mgcv]; };
 CAMAN = derive { name="CAMAN"; version="0.72"; sha256="10qikirv73d03ssg3sb6w3ih92ms5726b5lqw3x7r5rpbl9179rh"; depends=[mvtnorm sp]; };
-CARBayes = derive { name="CARBayes"; version="4.1"; sha256="0g4b44p3ybb92wrm42ws8yrrdzmxk454w6a3w20fbhfc2zprjilz"; depends=[CARBayesdata coda MASS Rcpp sp spam truncdist]; };
-CARBayesST = derive { name="CARBayesST"; version="1.1"; sha256="03vp6qajag0ak4lcn0ddyxri3ndiwsc4yxi6ym5lr2v6kv674wl6"; depends=[coda Rcpp spam truncdist]; };
+CARBayes = derive { name="CARBayes"; version="4.2"; sha256="1abb2yp5gvgn99dlsfj2cads5d0rjdznf8kghrhr21y3j9kk0aid"; depends=[CARBayesdata coda MASS Rcpp sp spam spdep truncdist]; };
+CARBayesST = derive { name="CARBayesST"; version="2.0"; sha256="1m2alay8iryqgkshdjb7dr30qh2672248anq1srnsydhy3llrhms"; depends=[coda MASS Rcpp spam truncdist]; };
 CARBayesdata = derive { name="CARBayesdata"; version="1.0"; sha256="19dhgkqpdcq1y866arb3qm7wbl348w66yl85kwajkmqgplx2pvaq"; depends=[shapefiles sp]; };
 CARE1 = derive { name="CARE1"; version="1.1.0"; sha256="1zwl4zv60mrzlzfgd7n37jjlr0j918a8ji36n94s5xw8wwipiznw"; depends=[]; };
 CARLIT = derive { name="CARLIT"; version="1.0"; sha256="04kpjfps4ydf8fj75isqp16g1asdsyf8nszhbfkpw1zxkrmiksyp"; depends=[]; };
@@ -247,7 +245,7 @@ CCTpack = derive { name="CCTpack"; version="1.4"; sha256="09s2ysqsz158lrah44rwvs
 CCpop = derive { name="CCpop"; version="1.0"; sha256="10kgw3b98r0kn74w89znq6skgk8b3ldil6yb0hn5rlcf6lazjzca"; depends=[nloptr]; };
 CDFt = derive { name="CDFt"; version="1.0.1"; sha256="0sc8ga48l3vvqfjq3ak5j1y27hgr5dw61wp0w5jpwzjz22jzqbap"; depends=[]; };
 CDLasso = derive { name="CDLasso"; version="1.1"; sha256="0n699y18ia2yqpk78mszgggy7jz5dybwsi2y56kdyblddcmz1yv7"; depends=[]; };
-CDM = derive { name="CDM"; version="4.3-0"; sha256="0xryd4l0fqa2m39zcgd6jyi6shlqxc98qgwdpg38csqmbpny4bvm"; depends=[lattice MASS mvtnorm plyr polycor psych Rcpp RcppArmadillo sfsmisc]; };
+CDM = derive { name="CDM"; version="4.4-1"; sha256="0m75h7q60bzn66hrv9w2s21w7yp1qphylrfv8323srnj2q4yqi93"; depends=[lattice MASS mvtnorm plyr polycor psych Rcpp RcppArmadillo sfsmisc]; };
 CDNmoney = derive { name="CDNmoney"; version="2012.4-2"; sha256="1isbvfq0lygs75y1hn3klqms8q7g1xbkcr8fgj75h1c99d4khvm6"; depends=[]; };
 CDVine = derive { name="CDVine"; version="1.2"; sha256="1qfjbzdfz2dydkfw3b0jjma4csn62177j5sgzh6rszf0nifsi97g"; depends=[igraph MASS mvtnorm]; };
 CEC = derive { name="CEC"; version="0.9.3"; sha256="05cgd281p0hxkni4nqb0d4l71aah3f3s6jxdnzgw8lqxaxz4194i"; depends=[]; };
@@ -264,7 +262,6 @@ CIFsmry = derive { name="CIFsmry"; version="1.0.1"; sha256="118vyiiy4iqn86n9xf84
 CINID = derive { name="CINID"; version="1.2"; sha256="0pkgzi2j0045p10kjvnq8f4j1agzrqfw0czvvfrzj9yjfpj8xc99"; depends=[]; };
 CINOEDV = derive { name="CINOEDV"; version="2.0"; sha256="0fjpxahc55zd972p3hlw9fk4dq8hpq715xff8p98kfh29dvw9mnz"; depends=[ggplot2 igraph R_matlab reshape2]; };
 CITAN = derive { name="CITAN"; version="2014.12-1"; sha256="0hiccsg49zgcdm5iwj2vzyqhwyfw6h5fd2gasy6hlakjp102mvy2"; depends=[agop DBI hash RGtk2 RSQLite stringi]; };
-CLAG = derive { name="CLAG"; version="2.18.1"; sha256="0y8m6m01vw3rxwrmxvwhpiy6dd2snr0lhb026l1494y43hhqi3wy"; depends=[]; };
 CLME = derive { name="CLME"; version="2.0-2"; sha256="11krgxn3fvbwknmiz2jyidpbb0svf4frvk99spd7i53m615sai91"; depends=[isotone lme4 MASS prettyR shiny stringr]; };
 CLSOCP = derive { name="CLSOCP"; version="1.0"; sha256="0rkwq9rl2ph4h5zwb2i3yphjyzxmh6b6k23a8gcczycx6xdq4yhw"; depends=[Matrix]; };
 CMC = derive { name="CMC"; version="1.0"; sha256="1r9a5k79fyw01yiwxq02327hpn4l1v2lp0958jj9217wxmhn3pr5"; depends=[]; };
@@ -278,7 +275,6 @@ CNprep = derive { name="CNprep"; version="2.0"; sha256="08dpjikx3ldqzw2kwb12q0kb
 COBRA = derive { name="COBRA"; version="0.99.4"; sha256="1r1cw12d7c148pcgcg08bfsr1q1s736kfpyyss6b4d7ny7wgmqy4"; depends=[]; };
 COMMUNAL = derive { name="COMMUNAL"; version="1.0"; sha256="0smza4q0gnhskyq3fxcrs2hq3lxkyp5xf3zd6zi92962lg6s3w3n"; depends=[cluster clValid fpc rgl]; };
 COMPoissonReg = derive { name="COMPoissonReg"; version="0.3.4"; sha256="1mf2q7phc2bn700yp7i2i6ccj6lrvh8b2dmibqihh76a85j1ycrq"; depends=[]; };
-COP = derive { name="COP"; version="1.0-2"; sha256="1gynknplvx97hjhi7adsgq9r9lqismch1q1pqvgmz0x1wkg4jj40"; depends=[dr MASS]; };
 COPASutils = derive { name="COPASutils"; version="0.1.6"; sha256="0vi7x14ma3i4gabdb04byr4ba0209lklj3d5ql2f2vaxyb4a1hj9"; depends=[dplyr ggplot2 kernlab knitr reshape2 stringr]; };
 CORE = derive { name="CORE"; version="3.0"; sha256="0wq9i7nscnzqiqz6zh6hglm7924261bw169q3x6l9i6jgqhvn32d"; depends=[]; };
 CORElearn = derive { name="CORElearn"; version="0.9.46"; sha256="1jwc3sqkbhhmn67x44iyqzvpjsnbrwhgq6yam6h6gf086nv0lmic"; depends=[cluster rpart]; };
@@ -316,7 +312,7 @@ CfEstimateQuantiles = derive { name="CfEstimateQuantiles"; version="1.0"; sha256
 ChainLadder = derive { name="ChainLadder"; version="0.2.0"; sha256="03gwavmimh4isrc6gpn72m52sqx1aj0prshzsb0531g45qxmvw9x"; depends=[actuar Hmisc lattice MASS Matrix reshape2 statmod systemfit tweedie]; };
 ChargeTransport = derive { name="ChargeTransport"; version="1.0.2"; sha256="0mq06ckp3yyj5g1z2sla79fiqdk2nlbclm618frhqcgmq93h0vha"; depends=[]; };
 CheckDigit = derive { name="CheckDigit"; version="0.1-1"; sha256="0091q9f77a0n701n668zaghi6b2k3n2jlb1y91nghijkv32a7d0j"; depends=[]; };
-ChemoSpec = derive { name="ChemoSpec"; version="4.0.1"; sha256="08z85g0r38xh57h3f4hdcg8wlaklpqmxvjla1562f3lxbqm1r9k1"; depends=[plyr rgl]; };
+ChemoSpec = derive { name="ChemoSpec"; version="4.0.6"; sha256="0zhqx6b1zp2vlp003rsaj7ayxa0zrk1kmm5xq3q10rkl6xnk0wid"; depends=[plyr rgl]; };
 ChemometricsWithR = derive { name="ChemometricsWithR"; version="0.1.8"; sha256="084da2hx6agryw7bv6img10pqmsdz2mpihbrj6j081lammrik4fj"; depends=[ChemometricsWithRData MASS pls]; };
 ChemometricsWithRData = derive { name="ChemometricsWithRData"; version="0.1.3"; sha256="14l1y4md8hxq8gvip5vgg07vcr0d9yyhm5ckhzk8zwprdabn9a10"; depends=[]; };
 ChoiceModelR = derive { name="ChoiceModelR"; version="1.2"; sha256="0dkp3354gvrn44010s8fjbmkpgn1hpl4xbfs5xslql8sk8rw0n2c"; depends=[]; };
@@ -330,6 +326,7 @@ Claddis = derive { name="Claddis"; version="0.1"; sha256="1dxsz62x856lpapw5xpvvr
 ClickClust = derive { name="ClickClust"; version="1.1.4"; sha256="17r8jzhzwqa5h04bxdcyv31jhk6c709sx5m1z53jh3yf9zmkilvi"; depends=[]; };
 ClimClass = derive { name="ClimClass"; version="1.0"; sha256="07jl8vwqyyj4q2hav8qbg69yjs73s3kbms5bd9hqs1y938rrp2l5"; depends=[geosphere ggplot2 reshape2]; };
 ClueR = derive { name="ClueR"; version="1.0"; sha256="1ak8pgbzm5xrk7pjnkbiqdwyvvyvrm6k6h50ycc86w3zy7fnqhds"; depends=[e1071]; };
+ClustGeo = derive { name="ClustGeo"; version="1.0"; sha256="0n7i6lwc86cizpn5ibd6k9i41w8fcbh1cdxqm7w52z024w0z40jh"; depends=[FactoMineR plyr rCarto]; };
 ClustMMDD = derive { name="ClustMMDD"; version="1.0.1"; sha256="0pzascdiadhvx4xjxa6kjw5kkmj3izphz2f86jnimyn5fid7cl02"; depends=[Rcpp]; };
 ClustOfVar = derive { name="ClustOfVar"; version="0.8"; sha256="17y8q2g4yjxs2jl1s8n5svxi021nlm0phs1g5hcnfxzpadq84wbs"; depends=[]; };
 ClustVarLV = derive { name="ClustVarLV"; version="1.4.0"; sha256="1dm4vyfq4mf9y2ha32fhirqyss4yjk5zxrb9i3fx4i8kbaw6160z"; depends=[Rcpp]; };
@@ -337,7 +334,7 @@ CoClust = derive { name="CoClust"; version="0.3-1"; sha256="00i0dghd35s91kkkxj1y
 CoImp = derive { name="CoImp"; version="0.2-3"; sha256="04n0drx98hi8hmlb5xwl87ylv03j1ld04vp9d8s5sphvm9bbx690"; depends=[copula gtools locfit nnet]; };
 CoinMinD = derive { name="CoinMinD"; version="1.1"; sha256="0invnbj5589wbs0k2w5aq9qak7axc3s0g9nw85c48lnl0v95s91i"; depends=[MCMCpack]; };
 CollocInfer = derive { name="CollocInfer"; version="1.0.1"; sha256="0wfk3qw28msz3wqm5xmivjgi18kqv1s6w76vh71zq777d6a7al6i"; depends=[deSolve fda MASS Matrix spam]; };
-ColorPalette = derive { name="ColorPalette"; version="1.0-0"; sha256="0mh1fjcl80fc5prrypl42aqj1svzs6600n250a5sah276bd0zzk9"; depends=[]; };
+ColorPalette = derive { name="ColorPalette"; version="1.0-1"; sha256="1dsj5njikx3qm2lnamqqg4qgwwyr11fwx9s5sdi7dkfx3nmf6dac"; depends=[]; };
 CombMSC = derive { name="CombMSC"; version="1.4.2"; sha256="1wkawxisn9alpwrymja8dla8n25z2fhai3l2xhin0b914y2kai09"; depends=[]; };
 CombinS = derive { name="CombinS"; version="1.1"; sha256="18wanir5vqk5i65hd6gr2za1xd26yfa0c3c029dbxsrsczwmb9xi"; depends=[]; };
 CombinePValue = derive { name="CombinePValue"; version="1.0"; sha256="0mlngyz2nq7s39javnnjbb5db93c5sg9daw2szng83mbyfza4hv2"; depends=[]; };
@@ -349,9 +346,12 @@ Comp2ROC = derive { name="Comp2ROC"; version="1.1"; sha256="0vhpw6k9barcx5fl3kw3
 CompGLM = derive { name="CompGLM"; version="1.0"; sha256="04bjal92r0m7is5ygqpd0mdz3fb3pwcr7rc3mbxg9sg57nff3kf5"; depends=[Rcpp]; };
 CompLognormal = derive { name="CompLognormal"; version="3.0"; sha256="1dhgr9l713l2n889bpa47lbg2qab0fz0r15qa928c0b9nz688ddm"; depends=[numDeriv]; };
 CompQuadForm = derive { name="CompQuadForm"; version="1.4.1"; sha256="1kv4bdkwidkjw0hgn2krv42p9v1a03p47g0p03lja3flhfbmiifj"; depends=[]; };
+CompR = derive { name="CompR"; version="1.0"; sha256="1k4q0yanvhdh3ksia7d42lxky19yci5vxhmi6h716g9sxzfsjk6b"; depends=[MASS]; };
 CompRandFld = derive { name="CompRandFld"; version="1.0.3-4"; sha256="1a3j5j50fz3f8vkvdmfccv5hn00spk08xanadqxpdy8pn925gqqb"; depends=[]; };
+CompareCausalNetworks = derive { name="CompareCausalNetworks"; version="0.1.1"; sha256="1j3yrgyv7vlgwi50w62q8dpk1zpvrwk9vn0ka0ry6524s9zs0r03"; depends=[Matrix]; };
 CompareTests = derive { name="CompareTests"; version="1.0"; sha256="098axl20jid35pqvgiwk6h91waafigwks6n5f4pg7xxx1fifks4f"; depends=[]; };
 Compind = derive { name="Compind"; version="1.0"; sha256="13gfsbjaciign8cswsibdj9a4rwj5afwrk4g1x4fyihfhnm4qx7m"; depends=[Benchmarking boot GPArotation Hmisc lpSolve MASS nonparaeff psych]; };
+ComplexAnalysis = derive { name="ComplexAnalysis"; version="1.0"; sha256="1yk0r3iwxirjsksnpwpnrgq4yhni6in9kgxxrs7v51l35zn78kji"; depends=[]; };
 Compounding = derive { name="Compounding"; version="1.0.2"; sha256="1xlb3ylwjv70850agir0mx79kcvs43h0n1sm22zcny3509s2r7lf"; depends=[hypergeo]; };
 ConConPiWiFun = derive { name="ConConPiWiFun"; version="0.4.4"; sha256="1dq9nlg04xs2n9g62y4gbl8ay4vsa25d7d7dra7q8zq6a561hzz5"; depends=[Rcpp]; };
 ConSpline = derive { name="ConSpline"; version="1.0"; sha256="04zwnnp8rmzacfl9skd1lybqwxja0527h4xwcx5ki2z8c0zvvpi8"; depends=[coneproj]; };
@@ -365,6 +365,7 @@ Copula_Markov = derive { name="Copula.Markov"; version="1.0"; sha256="028rmpihyz
 CopulaREMADA = derive { name="CopulaREMADA"; version="0.9"; sha256="0fhd4g8157rmkda5dygvnvb50f8dz31wlg1x432g9ra8fw7bdq01"; depends=[matlab statmod tensor]; };
 CopulaRegression = derive { name="CopulaRegression"; version="0.1-5"; sha256="0dd1n7b23yww36718khi6a5kgy8qjpkrh0k433c265653mf1siq8"; depends=[MASS VineCopula]; };
 CopyDetect = derive { name="CopyDetect"; version="1.1"; sha256="0h9bf7ay5yr6dwk7q28b6xxfzy6smljkq6qwjkzfscy5hnmwxkpa"; depends=[irtoys]; };
+CopyNumber450kCancer = derive { name="CopyNumber450kCancer"; version="1.0.3"; sha256="1rraqp2hi6sa4j4lci1zbvr1q8rm6vrlqwjn81qqc57h4an07540"; depends=[]; };
 CorReg = derive { name="CorReg"; version="1.0.5"; sha256="1b7l17i33bqvdzgqw5vc73fnpdgqbr01456qgmxls80ji8qjiv9x"; depends=[corrplot elasticnet lars MASS Matrix mclust mvtnorm Rcpp RcppEigen ridge Rmixmod rpart]; };
 CorrBin = derive { name="CorrBin"; version="1.5"; sha256="1kg8kms76z127j2vmf7v162n0sh2jqylw4i7c35x5sig4q22m9gy"; depends=[boot combinat dirmult geepack mvtnorm]; };
 CorrMixed = derive { name="CorrMixed"; version="0.1-11"; sha256="18n70yx6yysvcn3wsf1zmnp4z2hs3783mr1n0pjp2ph5yd9xk4mg"; depends=[nlme psych]; };
@@ -394,7 +395,6 @@ DALY = derive { name="DALY"; version="1.4.0"; sha256="1gx4q24149q1ipsrinswrm37z1
 DAMOCLES = derive { name="DAMOCLES"; version="1.1"; sha256="07z8mynhqnk1zcvm84w09xzkiy2dfxwhmnpi6gaddr3p0waql4gj"; depends=[ape caper deSolve expm geiger matrixStats picante]; };
 DAMisc = derive { name="DAMisc"; version="1.3"; sha256="0d6fkg0c5a2jx1khv013lmahx5clyzab9w2dsi5zwxnf0jz5m8fc"; depends=[car effects gdata lattice MASS nnet pscl sm xtable]; };
 DATforDCEMRI = derive { name="DATforDCEMRI"; version="0.55"; sha256="0v26a1gi8l21ga5nqcnyfaa7gc8zxq6wk95b96ajgpdybb0l9s53"; depends=[akima lattice locfit matlab R_methodsS3 R_oo xtable]; };
-DBFTest = derive { name="DBFTest"; version="1.0"; sha256="0h83ic16z0lg7grjh4jbrxf672qchqv4zzypm2b1mhmzl01jn1wg"; depends=[]; };
 DBGSA = derive { name="DBGSA"; version="1.2"; sha256="04zqh9y3nqcdzs5jn8aaq5idy9zl450ikvl788xs860wlg692qv2"; depends=[fdrtool]; };
 DBI = derive { name="DBI"; version="0.3.1"; sha256="0xj5baxwnhl23rd5nskhjvranrwrc68f3xlyrklglipi41bm69hw"; depends=[]; };
 DBKGrad = derive { name="DBKGrad"; version="1.6"; sha256="0207zx0v1x3zhfbs0h1ssxc1b683k111f90k8ybhknb147104knr"; depends=[lattice minpack_lm SDD TSA]; };
@@ -427,7 +427,7 @@ DOvalidation = derive { name="DOvalidation"; version="0.1.0"; sha256="0vm4sxbchk
 DPpackage = derive { name="DPpackage"; version="1.1-6"; sha256="01qdl6cp6wkddl9fwwpxwvyhb7lpjxis6wnbm2s288y2n9wi4j24"; depends=[MASS nlme survival]; };
 DPw = derive { name="DPw"; version="1.1.3"; sha256="1cw9qig5z2nfp2b3k4ng5hpar9izd3d6jihj93mkc0rqcli2wzp1"; depends=[fOptions]; };
 DSBayes = derive { name="DSBayes"; version="1.1"; sha256="0iv4l11dww45qg8x6xcf82f9rcz8bcb9w1mj7c7ha9glv5sfb25v"; depends=[BB]; };
-DSL = derive { name="DSL"; version="0.1-5"; sha256="0k320cmim9mvi5cmr6964h9i2jbskh76xws3p6zsfakk63ndg3rr"; depends=[]; };
+DSL = derive { name="DSL"; version="0.1-6"; sha256="0fmqxladifqqcs4mpb8a1az74fyb4gb8l2y5gzqaad3dbiz82qih"; depends=[]; };
 DSpat = derive { name="DSpat"; version="0.1.6"; sha256="1v6dahrp8q7fx0yrwgh6lk3ll2l8lzy146r28vkhz08ab8hiw431"; depends=[mgcv RandomFields rgeos sp spatstat]; };
 DSsim = derive { name="DSsim"; version="1.0.3"; sha256="01kkpzs0prcq43y4nmyaw39bgjabr99xxs2hn3fmb4ka46xj0bfb"; depends=[mgcv mrds shapefiles splancs]; };
 DStree = derive { name="DStree"; version="1.0"; sha256="14wba25ylmsyrndh007kl377dv4r34wr1555yxl6kyxrs4yg3jir"; depends=[Ecdat pec Rcpp rpart rpart_plot survival]; };
@@ -453,7 +453,7 @@ DeducerPlugInScaling = derive { name="DeducerPlugInScaling"; version="0.1-0"; sh
 DeducerSpatial = derive { name="DeducerSpatial"; version="0.7"; sha256="0133qk3yjcifyha7c4pqr5s0hmbci72bzgil2r0sxjmrljs3q727"; depends=[Deducer Hmisc JavaGD maptools OpenStreetMap rgdal scales sp UScensus2010]; };
 DeducerSurvival = derive { name="DeducerSurvival"; version="0.1-0"; sha256="03qk3y4pibvrxbnxbm5rlksw807dvbilip1jbpn1r7k02ibzq676"; depends=[Deducer]; };
 DeducerText = derive { name="DeducerText"; version="0.1-2"; sha256="0if2p9j74wa5rva4iv0i8iax22grl9j7lqcqzqlywjgqwnlzxa05"; depends=[Deducer RColorBrewer SnowballC tm wordcloud]; };
-Delaporte = derive { name="Delaporte"; version="2.2-2"; sha256="1smx8vbi1kvfij00aq0fzj03sxagnzn9vfws0f5973bp3q72x86q"; depends=[Rcpp]; };
+Delaporte = derive { name="Delaporte"; version="2.2-3"; sha256="0iw9y4582rf736jpllw3lc24cqa4q07q9432xdxp4cl5qwgkk40l"; depends=[Rcpp]; };
 Demerelate = derive { name="Demerelate"; version="0.8-1"; sha256="1qngwlzzpd2cmij5ldrmhcn12s9yxd0rargc5vzvkrwcqpkgylkn"; depends=[Formula fts mlogit sfsmisc vegan]; };
 DendSer = derive { name="DendSer"; version="1.0.1"; sha256="0id6pqx54zjg5bcc7qbxiigx3wyic771xn9n0hbm7yhybz6p3gz9"; depends=[gclus seriation]; };
 Density_T_HoldOut = derive { name="Density.T.HoldOut"; version="2.00"; sha256="0kh5nns1kqyiqqfsgvxhx774i2mf4gcim8fp5jjyq577x4679r31"; depends=[histogram]; };
@@ -478,7 +478,7 @@ Disake = derive { name="Disake"; version="1.5"; sha256="1fw45fmnir6h34jw8917mhyz
 DiscML = derive { name="DiscML"; version="1.0.1"; sha256="0qkh0yak1kmzxxx0cqb47zgrj8v2s1d5danpibwwg43j138sb73l"; depends=[ape]; };
 DiscreteInverseWeibull = derive { name="DiscreteInverseWeibull"; version="1.0.1"; sha256="0w0s2fixpcmcwids35xx91hll9rf9qbi7155sp90dxd3vr8c939v"; depends=[Rsolnp]; };
 DiscreteLaplace = derive { name="DiscreteLaplace"; version="1.0"; sha256="1mwqvlhgswqp697zjl6yjzqbgazycwwz6dfdvx8s72hdmnlqqr9r"; depends=[]; };
-DiscreteWeibull = derive { name="DiscreteWeibull"; version="1.0"; sha256="0v8za4arqarf20jrw38dzcjxdwfdpn0ss7p5yxbwhylnj7qz207w"; depends=[Rsolnp]; };
+DiscreteWeibull = derive { name="DiscreteWeibull"; version="1.0.1"; sha256="09v34lwaahx0d30zxb4b3r84ryllz1fsmbp5wfr341b5flp20wvg"; depends=[Rsolnp]; };
 DiscriMiner = derive { name="DiscriMiner"; version="0.1-29"; sha256="1ii8aa4dwfk991qdnpmkva20wvs5fqcna9030c799ybf11qpdass"; depends=[]; };
 Distance = derive { name="Distance"; version="0.9.3"; sha256="054z9pi8m8gjpax3s2hajvaik4yvfpy8qc4gmpl9bqncrk594pbv"; depends=[mrds]; };
 DistatisR = derive { name="DistatisR"; version="1.0"; sha256="1il00v26q68h5dd5c9lm2jblgn8hs6n0457r13mlw6r7pcj0158j"; depends=[car prettyGraphs]; };
@@ -499,14 +499,14 @@ DynClust = derive { name="DynClust"; version="3.13"; sha256="020zl2yljp47r03rcbz
 DynNom = derive { name="DynNom"; version="1.0.1"; sha256="0gdy3kqj63khm74cdjhfmlnd06ard97h1598rkqwm7c3cng7b98c"; depends=[compare ggplot2 shiny stargazer]; };
 DynTxRegime = derive { name="DynTxRegime"; version="2.1"; sha256="0dxf16zpj6cyx7afbvr4w4d76w4vshbvvkkqla68dbav0yvy7z7i"; depends=[modelObj]; };
 DynamicDistribution = derive { name="DynamicDistribution"; version="1.1"; sha256="1s78hpj2pxjs4vixin1i816qjbn3wk7b8rd2zdjp4d4rbxifcqf5"; depends=[]; };
-EBEN = derive { name="EBEN"; version="1.1.1"; sha256="12nh96avcx4rrbmlr1q046i5ymrsnqvf0ra5ynh58akajfx7wy49"; depends=[]; };
+EBEN = derive { name="EBEN"; version="4.1"; sha256="0xin08w8ay3m31a2alnjdgqzw7nwzjfb19pv5n2j0diar73ds4c5"; depends=[]; };
 EBMAforecast = derive { name="EBMAforecast"; version="0.42"; sha256="161l6jxbzli2g5lcmlp74z320rsvsi80pxk1vc1ypa1hgwz3q80x"; depends=[abind ensembleBMA Hmisc plyr separationplot]; };
 EBS = derive { name="EBS"; version="3.0"; sha256="0nrqglbfr7wagd4xrk5jx0kficjgvk7wqwzqrbs589dkll24sn5b"; depends=[MASS]; };
 EBglmnet = derive { name="EBglmnet"; version="3.6"; sha256="0qjwk5y9bghidha4i937nc0kl1jz4d8g2br6ij8651lf2byj9s1a"; depends=[]; };
 EDISON = derive { name="EDISON"; version="1.1"; sha256="09xw4p4hwj8djq143wfdcqhr2mhwynj4ixj3ma7crhqidgal169p"; depends=[corpcor MASS]; };
 EDR = derive { name="EDR"; version="0.6-5.1"; sha256="10ldygd1ymc4s9gqhhnpipggsiv4rwbgajvdk4mykkg3zmz7cbpm"; depends=[]; };
 EFDR = derive { name="EFDR"; version="0.1.1"; sha256="0jgznwrd40g9xmvhrd7b441g79x41ppfdn6vbsbzc0k5ym1wzb1p"; depends=[doParallel dplyr foreach gstat Matrix sp tidyr waveslim]; };
-EGRET = derive { name="EGRET"; version="2.2.0"; sha256="1a3bvmshmxrnaijl9pklfia0ab94rzn22ywjh9gwn268qai52zjy"; depends=[dataRetrieval fields lubridate survival]; };
+EGRET = derive { name="EGRET"; version="2.3.0"; sha256="07b2wxdciybvm3l579vibdprcxvzl2ym25xba7wlxmrbx37ndx5z"; depends=[dataRetrieval fields lubridate survival]; };
 EIAdata = derive { name="EIAdata"; version="0.0.3"; sha256="12jgw3vi2fminwa4lszczdr4j4svn2k024462sgj1sn07a4a4z2s"; depends=[plyr XML xts zoo]; };
 EILA = derive { name="EILA"; version="0.1-2"; sha256="0wxl9k4fa0f7jadw3lvn97iwy7n2d02m8wvm9slnhr2n8r8sx3hb"; depends=[class quantreg]; };
 EL = derive { name="EL"; version="1.0"; sha256="13r7vjy2608h8jph8kwy69rnkg98b2v69117nrl728r3ayc46a18"; depends=[]; };
@@ -517,7 +517,6 @@ EMC = derive { name="EMC"; version="1.3"; sha256="0sdpxf229z3j67mr9s7z4adzvvphgv
 EMCC = derive { name="EMCC"; version="1.2"; sha256="1qff8yvw7iqdsrqkvwb7m14xh7gcnjcrf8gw00g4j6aq0h0cgk2z"; depends=[EMC MASS mclust]; };
 EMCluster = derive { name="EMCluster"; version="0.2-4"; sha256="0m5cl5mrg6q0ixfpjj1jwd7l5hcldc33lr7n6xgy7p9nlr52mimz"; depends=[MASS]; };
 EMD = derive { name="EMD"; version="1.5.7"; sha256="0m2g7akg9h964d6qr1mj20h9pcb2fcmala3skhl0qpy8qz01w5ck"; depends=[fields locfit]; };
-EMJumpDiffusion = derive { name="EMJumpDiffusion"; version="1.4.1"; sha256="10lw6717yq9vlywn5ilsl0d99fpx3zvc87vf7s0zxswhs81h7x1w"; depends=[]; };
 EMMAgeo = derive { name="EMMAgeo"; version="0.9.1"; sha256="1rxbb666gh9g35m4jqa6y1zjp82s62ha6n92fkjvkk9wm25w6imr"; depends=[GPArotation limSolve shape]; };
 EMMIXcontrasts = derive { name="EMMIXcontrasts"; version="1.0.0"; sha256="1q7bwf7kkpraj38lz5s1lhhghp7a5lzyj5b9x8024g6rh2qlwp7v"; depends=[]; };
 EMMIXskew = derive { name="EMMIXskew"; version="1.0.1"; sha256="16jkq0a9k1gf6gia8r65nwa2lh8zny4jmnq51g2rcqm44s5ylqbh"; depends=[KernSmooth lattice mvtnorm]; };
@@ -547,7 +546,7 @@ EasyStrata = derive { name="EasyStrata"; version="8.6"; sha256="0agmap9lmqbpfw8i
 EbayesThresh = derive { name="EbayesThresh"; version="1.3.2"; sha256="0n7cr917jrvmgwfqki7shvz9g9zpmbz9z8hm5ax7s8nnfzphrh4g"; depends=[]; };
 Ecdat = derive { name="Ecdat"; version="0.2-7"; sha256="1z9mxx3mvn3vi5drxlzss7gs7vpzg7shinl529bx4jpxqpci90jy"; depends=[Ecfun]; };
 Ecfun = derive { name="Ecfun"; version="0.1-4"; sha256="0h3351pcahrn578lz1pcb7h3chmh0vmwbn9iqll98vibck847gai"; depends=[fda gdata jpeg MASS RCurl stringi TeachingDemos tis XML]; };
-EcoGenetics = derive { name="EcoGenetics"; version="1.2.0"; sha256="090vcbl8gl23335rga1126w6jqvql62kk9wxlfpjz4q11czgdclq"; depends=[adegenet ggplot2 hierfstat party raster rgdal rkt SoDA sp vegan]; };
+EcoGenetics = derive { name="EcoGenetics"; version="1.2.0-1"; sha256="08wa9w8ib0bp386bs6vlfzbdbcxjf8pz97mlfml3dl15092g13x3"; depends=[adegenet ggplot2 party raster rgdal rkt SoDA sp]; };
 EcoHydRology = derive { name="EcoHydRology"; version="0.4.12"; sha256="03dzdw79s0cnnd7mv6wfxw374yf66dlcmj10xh6sh5i352697xp1"; depends=[DEoptim operators topmodel XML]; };
 EcoSimR = derive { name="EcoSimR"; version="0.1.0"; sha256="13ni3vdfahqjyb9xrv7fmnbj5m5n3jwfh1bl9r0bvhi5w72kb7rj"; depends=[MASS]; };
 EcoTroph = derive { name="EcoTroph"; version="1.6"; sha256="0zi6g0ra107s47r32mm9h6r1wll3avi0mpjmhcr0nj9y48nv14w3"; depends=[XML]; };
@@ -555,9 +554,9 @@ EcoVirtual = derive { name="EcoVirtual"; version="0.1"; sha256="1c815kxljk4qhw0z
 EditImputeCont = derive { name="EditImputeCont"; version="1.0.0"; sha256="1ghrax514hm8zymmaifwbls4wpic8qqzlf83p615k3d96p4lb304"; depends=[editrules Rcpp]; };
 EffectLiteR = derive { name="EffectLiteR"; version="0.3-3"; sha256="14v5samvkzpiy0gq6lq1vs5jqi084sq1if2sih0lk57qxz2647qh"; depends=[car foreign ggplot2 lavaan lavaan_survey nnet shiny survey]; };
 EffectStars = derive { name="EffectStars"; version="1.5"; sha256="0j2jxxxpcsrsjzszz4mfk3892ain3qkswa1dkpsmfsk4zs06g0s4"; depends=[VGAM]; };
-EffectTreat = derive { name="EffectTreat"; version="0.1-11"; sha256="1ps3jac3wc1v325maf4vx9jkirxbc1dfflr218xbzbgrj0zx9diz"; depends=[]; };
+EffectTreat = derive { name="EffectTreat"; version="0.2"; sha256="0az4ajqq98adxrr1wj8pkv16f2g4gg3dikizvp7qa1amcnpahjx3"; depends=[]; };
 EffectsRelBaseline = derive { name="EffectsRelBaseline"; version="0.5"; sha256="1dsnakcrgmlx44599ii92wvhxbxrh0hij59709wsskx1x1152zvh"; depends=[]; };
-ElemStatLearn = derive { name="ElemStatLearn"; version="2012.04-0"; sha256="107x2mybadqgw03j3yq8ibq3ljs4fpx90chvsirpylqhv77wsabl"; depends=[]; };
+ElemStatLearn = derive { name="ElemStatLearn"; version="2015.6.26"; sha256="0r8d0fm4yx7iawcsikksd7i01kbyqz3xkdls74f3ngkvj4iq1rqc"; depends=[]; };
 EloRating = derive { name="EloRating"; version="0.43"; sha256="0gzpi4qjiqn0lzjwy37pkz6fg7dkp2hv2dfqgzfk32wsj0bswgab"; depends=[zoo]; };
 ElstonStewart = derive { name="ElstonStewart"; version="1.1"; sha256="1y2g4x3fhi78c2406bk8r8c3x9zhx8ya3qlbnypdm65j0minixsn"; depends=[digest kinship2]; };
 EnQuireR = derive { name="EnQuireR"; version="0.10"; sha256="00kyclcr8da79lwpqa1vzkwn6pgf197h2biackwgphb0byhi8ssx"; depends=[FactoMineR MASS Rcmdr SensoMineR]; };
@@ -572,16 +571,17 @@ EnvNicheR = derive { name="EnvNicheR"; version="1.0"; sha256="1vw21gsdrx8gkf1rf8
 EnvStats = derive { name="EnvStats"; version="2.0.1"; sha256="1z909p56dlhr00a5ir55sn5ny51h1wwi85as6arv3cn8c0zqyi74"; depends=[MASS]; };
 EnviroStat = derive { name="EnviroStat"; version="0.4-2"; sha256="0ckax6vkx0vwczn21nm1dr8skvpm59xs3dgsa5bs54a3xhn5z9hs"; depends=[MASS]; };
 Epi = derive { name="Epi"; version="1.1.67"; sha256="12wbzv21whjnzlyqacgqmsgrjbkgj2495y9fwvav5mr21yfrjds3"; depends=[]; };
-EpiContactTrace = derive { name="EpiContactTrace"; version="0.8.8"; sha256="1vlr2xxnyq1i6ky39g8j3pf3m5775bmhii7vpskb0x7nnq161yzb"; depends=[plyr R2HTML Rcpp]; };
+EpiBayes = derive { name="EpiBayes"; version="0.1.2"; sha256="1qfir0dl085c9ib1acsygmj7gihc4ar98k5niqdsgnmji88h17y2"; depends=[coda epiR scales shape]; };
+EpiContactTrace = derive { name="EpiContactTrace"; version="0.9.1"; sha256="10yd24xcydn03rq9kcqcxj5gn25v54ljsm9mgc206g9wf1xx0wjf"; depends=[]; };
 EpiDynamics = derive { name="EpiDynamics"; version="0.2"; sha256="1hqbfysvw2ln8z3as6lfcjlhkzccksngwh2vm25zsgy93gxw3mcc"; depends=[deSolve ggplot2 reshape2]; };
 EpiEstim = derive { name="EpiEstim"; version="1.1-2"; sha256="0r56iglhkrqvlsf3gbahd544h944fmbyn6jdc113rhjscf6dl605"; depends=[]; };
-EpiModel = derive { name="EpiModel"; version="1.1.6"; sha256="0h3bbvk9qyhc0jml2jd21dahi1v00alar67jkzpwnavvmcgd8a3s"; depends=[deSolve doParallel ergm foreach network networkDynamic RColorBrewer statnet_common tergm]; };
+EpiModel = derive { name="EpiModel"; version="1.2.0"; sha256="16vnsgar45y2gr93qzv3c33b11y5j0rys3q2k29mwb0i93f4cf9p"; depends=[deSolve doParallel ergm foreach network networkDynamic RColorBrewer tergm]; };
 Eplot = derive { name="Eplot"; version="1.0"; sha256="1glmkjjj432z9g4gi56pgvfrm5w86iplirnd5hm4s99qci2hgc64"; depends=[]; };
 EstCRM = derive { name="EstCRM"; version="1.3"; sha256="0fmnlh0pnprskq01iq3rfassyxq7fywiprvqw0xdlh8yxl3w2c9n"; depends=[Hmisc lattice]; };
 EstSimPDMP = derive { name="EstSimPDMP"; version="1.2"; sha256="05gp0gdix4d98111sky8y88p33qr5w4vffkp6mg9klggn37kdj8j"; depends=[]; };
 EvCombR = derive { name="EvCombR"; version="0.1-2"; sha256="1f5idjaza91npf64hvcnpgnr72mpb7y6kf91dp57xy9m14k7jx5g"; depends=[]; };
 EvalEst = derive { name="EvalEst"; version="2015.4-2"; sha256="1jkis39iz3zvi5yfd0arvw7bym6naq45f5cravywg8c37n9v967x"; depends=[dse setRNG tfplot tframe]; };
-Evapotranspiration = derive { name="Evapotranspiration"; version="1.5"; sha256="181s9wwil07740n79gz2ar9c1bjxy45v4fyxxkqjmdfly72la542"; depends=[zoo]; };
+Evapotranspiration = derive { name="Evapotranspiration"; version="1.6"; sha256="0z15n5vacq6aghcbcwiiyq6kc8cl6pn3ip3axxg9g7bxig2rb8fh"; depends=[zoo]; };
 EvoRAG = derive { name="EvoRAG"; version="2.0"; sha256="0gb269mpl2hbx1cqakv3qicpyrlfb4k8a3a7whhg90masbgmh8f6"; depends=[]; };
 ExPosition = derive { name="ExPosition"; version="2.8.19"; sha256="04s9kk8x6khvnryg6lqdwnyn79860dzrjk8a9jyxgzp94rgalnnz"; depends=[prettyGraphs]; };
 Exact = derive { name="Exact"; version="1.6"; sha256="0d5g5p98yrcd6v56iadsq448hl522shdqln2icmc3yfnya326as7"; depends=[]; };
@@ -595,7 +595,7 @@ ExtDist = derive { name="ExtDist"; version="0.6-3"; sha256="1vsxm578bb70wnz3mxm7
 ExtremeBounds = derive { name="ExtremeBounds"; version="0.1.5"; sha256="1fsrp2dm1bdg5p0qsi2wa8qxrlq065jlazsxzixpjsni910mrb2k"; depends=[Formula]; };
 FACTscorer = derive { name="FACTscorer"; version="0.1.0"; sha256="1gbfpm5szi6w8iyp7ywpqrmdq0wrv5axj29sj9gxjwmjfh5qgqjx"; depends=[]; };
 FADA = derive { name="FADA"; version="1.2"; sha256="1wpjqvhhgvirzcvl8r23iaw63wr8rys19mjy71mn24wg3zwnc2qz"; depends=[crossval elasticnet glmnet MASS mnormt sda sparseLDA]; };
-FAMILY = derive { name="FAMILY"; version="0.1.18"; sha256="1f1s0p721sl27b9xp2wrdyx03kv1bdin4wfknmw1k0nnc94dcnp2"; depends=[pheatmap pROC]; };
+FAMILY = derive { name="FAMILY"; version="0.1.19"; sha256="1912l2zj2cmh8yx8lkg8fpgvfddn6wbi1vrr4yx04mh73gk1s5mk"; depends=[pheatmap pROC]; };
 FAMT = derive { name="FAMT"; version="2.5"; sha256="0mn85yy9zmiklfwqjbhbhzbawwp2yqrm9pvm8jhasn9c3kw1pcp2"; depends=[impute mnormt]; };
 FAOSTAT = derive { name="FAOSTAT"; version="2.0"; sha256="06z8c964sf73ld4v9vybqjsdxskxp3ssyv0a3mpcs9la5y7n9jaz"; depends=[classInt data_table ggplot2 labeling MASS plyr RJSONIO scales]; };
 FAdist = derive { name="FAdist"; version="2.1"; sha256="1y66ymg0k6kmyq4bclwwlqkp8brkq925ajpp0jqqn39f749c2kji"; depends=[]; };
@@ -639,9 +639,9 @@ FWDselect = derive { name="FWDselect"; version="2.0"; sha256="12hhb2vysg3c9fzh56
 FacPad = derive { name="FacPad"; version="3.0"; sha256="0h7knzin0rfk25li127zwjsyz223w7nx959cs328p6b2azhgn59b"; depends=[MASS Rlab]; };
 FactMixtAnalysis = derive { name="FactMixtAnalysis"; version="1.0"; sha256="1l4wfp39b7g38vdk6jpd5zq08sjhsg0s71f662aca2rj6l3a2x3r"; depends=[MASS mvtnorm]; };
 FactoClass = derive { name="FactoClass"; version="1.1.1"; sha256="0m5108g2nhdwqqmkn04l1x0kx32ikkhcz6gki0hpj9hlzrkya5w6"; depends=[ade4 xtable]; };
-FactoMineR = derive { name="FactoMineR"; version="1.30"; sha256="16zxrr1mqv56ipkhz2m8hrhipxynphy9d104zsqbwa0k7336z2b0"; depends=[car cluster ellipse flashClust lattice leaps MASS scatterplot3d]; };
+FactoMineR = derive { name="FactoMineR"; version="1.31.3"; sha256="164pxgy9sn7irk4l31nfpmdmrw9qscwzdmvzr9nc9m36nhmajvkr"; depends=[car cluster ellipse flashClust lattice leaps MASS scatterplot3d]; };
 Factoshiny = derive { name="Factoshiny"; version="1.0.2"; sha256="0wwsv0frn2d6a5l5lr9qzqglznaigc23bq7nhcbfy1wlvsmimnr3"; depends=[FactoMineR shiny]; };
-Fahrmeir = derive { name="Fahrmeir"; version="2012.04-0"; sha256="1axx6r4g6gj1inih41i2az4y0d3jq9x1a6nyj8k7wp51z4z2nbmk"; depends=[]; };
+Fahrmeir = derive { name="Fahrmeir"; version="2015.6.25"; sha256="1ca4m3m4jip7n489yywdfvh6nlhxspg5awxi23spgfnvhrcs9k3y"; depends=[]; };
 Familias = derive { name="Familias"; version="2.2"; sha256="1nhjxn3f063gvi4jvwb8r4fap7f1zbcvb6qa30153yh31yprljls"; depends=[kinship2 paramlink]; };
 FastHCS = derive { name="FastHCS"; version="0.0.5"; sha256="02ds9syqh8wpjrqibdv3kqxcyijclm572daqrj262b4b6211v46x"; depends=[matrixStats Rcpp RcppEigen robustbase]; };
 FastImputation = derive { name="FastImputation"; version="1.2"; sha256="04bz623kcanxcl9z8zl6m7m47pk0szcjrjlgs5v1yl3jnq9m2n7g"; depends=[]; };
@@ -649,10 +649,10 @@ FastKNN = derive { name="FastKNN"; version="0.0.1"; sha256="1iz8ybzkvbyqwb00s7cp
 FastPCS = derive { name="FastPCS"; version="0.1.2"; sha256="1lqb6g65vna2p7kc2y4kc5piy3280nlxl41bdkxkng2icmq14l58"; depends=[matrixStats Rcpp RcppEigen]; };
 FastRCS = derive { name="FastRCS"; version="0.0.6"; sha256="0wjsh37jas8hcb9554ijvwj0k8dx96fjf88bzgy7nbim2byiy8p8"; depends=[matrixStats Rcpp RcppEigen]; };
 FastRWeb = derive { name="FastRWeb"; version="1.1-0"; sha256="1hiabi7ibp69n5wi5x4kwznxhc2i7dxdrqf1fm6ppv7ix0wkjs07"; depends=[Cairo]; };
-FatTailsR = derive { name="FatTailsR"; version="1.0-3"; sha256="0r9n18qlr70p6y4v1xv1lxi1lzm9qp29qy4w51chllqjn15kmv7l"; depends=[minpack_lm]; };
+FatTailsR = derive { name="FatTailsR"; version="1.2-3"; sha256="139hc8axzp0faib0lpj3f6kfwna29vsqjjwflcva8xsghakc1d4r"; depends=[minpack_lm timeSeries]; };
 FeaLect = derive { name="FeaLect"; version="1.10"; sha256="1r7rgcadrqjhxn2g2w16axygsck82fprxg7l14ai11bn4b7h4pmb"; depends=[lars rms]; };
 FeatureHashing = derive { name="FeatureHashing"; version="0.9"; sha256="1xbzmyah22kjrkd7ln1pjzwyn5w0zmhdhs9w1a3p8rjxrwmx6ssf"; depends=[BH digest magrittr Matrix Rcpp]; };
-FedData = derive { name="FedData"; version="1.1.0"; sha256="0s5blfhlizl4lv22lxjhqrwrf10mxgy2cd5z4a9xg05k419q7alr"; depends=[data_table devtools igraph raster RCurl rgdal rgeos soilDB sp]; };
+FedData = derive { name="FedData"; version="2.0.0"; sha256="1c3lfjl1rdd34f0d9gyhvyclqcb83cq1fvf5w88s8d32q6iimigx"; depends=[data_table devtools igraph raster RCurl rgdal rgeos soilDB sp]; };
 FeedbackTS = derive { name="FeedbackTS"; version="1.3.1"; sha256="1zx64wbl5pzqn69bjhshd3nayxx4wlg7n1zwv7ilh68raxfxnbbx"; depends=[geoR mapdata maps proj4 sp]; };
 FieldSim = derive { name="FieldSim"; version="3.2.1"; sha256="1snz2wja3lsgxys0mdlrjjvk5575cyd64mjipafibwcs97bva5x1"; depends=[RColorBrewer rgl]; };
 FinAsym = derive { name="FinAsym"; version="1.0"; sha256="0v15ydz4sq9djwcdcfp90mk8l951rry7h91d7asgg53mddbxjj6f"; depends=[]; };
@@ -679,14 +679,16 @@ ForwardSearch = derive { name="ForwardSearch"; version="1.0"; sha256="0yd47832pi
 FourScores = derive { name="FourScores"; version="1.0"; sha256="0d21mrl9bzsvhljv7ymiyck508smp66w9qivrb2rp0p803h9yibm"; depends=[]; };
 FrF2 = derive { name="FrF2"; version="1.7-1"; sha256="0i9hfx7n0g866imdsmalqzs8v95vx08cz97hi8311v1wc3pqsn1j"; depends=[BsMD DoE_base igraph scatterplot3d sfsmisc]; };
 FrF2_catlg128 = derive { name="FrF2.catlg128"; version="1.2-1"; sha256="0i4m5zb9dazpvmnp8wh3k51bm0vykh4gncnhdg71mfk4hzrfpdac"; depends=[FrF2]; };
+FractalParameterEstimation = derive { name="FractalParameterEstimation"; version="1.0"; sha256="12v72zn1san2kv82b9y1vd0gzd1fa800yscc63zlq8lfflz47xvz"; depends=[]; };
 Frames2 = derive { name="Frames2"; version="0.1.1"; sha256="004h3w5bfnbbxa8yczlcd8m0bc9xq91dg5ph6yql28ivibw24q1l"; depends=[sampling]; };
 FreeSortR = derive { name="FreeSortR"; version="1.1"; sha256="03z5wmr88gr6raa2cg7w4j6y5vgxr3g8b8axzhbd7jipswr5x1jf"; depends=[ellipse smacof vegan]; };
-FunChisq = derive { name="FunChisq"; version="2.0.2"; sha256="0j767iwf1hr7r532hdkrl9q2xiz997gd3rc7aca18fj743w6ras9"; depends=[BH Rcpp RcppClassic]; };
+FunChisq = derive { name="FunChisq"; version="2.1.0"; sha256="0k5b0kl64yswl5d41yiav9xnqcsqx8n6qc5p2nz5vqjs6qb7mbvd"; depends=[BH Rcpp RcppClassic]; };
 FunCluster = derive { name="FunCluster"; version="1.09"; sha256="0i73asn1w4s6ydf2ddn5wpr0mwbbxzgmaly1pslarzkx71wk03fz"; depends=[cluster Hmisc]; };
 FuncMap = derive { name="FuncMap"; version="1.0-3"; sha256="0bhx7y1n75r3jwf5mkx2i2bqfjgzxgsw58nwhfl48ldibgx7h1qs"; depends=[mvbutils]; };
 Funclustering = derive { name="Funclustering"; version="1.0.1"; sha256="0i6g98mfgdyc9hdzvviynrgqhkzicp8y6s0scqy3ifgk9h1k79dw"; depends=[fda Rcpp RcppEigen]; };
 FunctionalNetworks = derive { name="FunctionalNetworks"; version="1.0.0"; sha256="071hjgiccbrf1gxrh7niw2w1p6vgc77qvrildi59xhk53qcwzqdp"; depends=[Biobase]; };
 FusedPCA = derive { name="FusedPCA"; version="0.2"; sha256="0z4kvm6mn11fmc8w62aky2binjdcgrw4ij5vg65sb55da9s8d2kd"; depends=[genlasso]; };
+FuzzyLP = derive { name="FuzzyLP"; version="0.1-3"; sha256="1c7yynrz0vfvan9mfin2vsrkhhi3sy8c5nya7l8hja0nh1a4bzki"; depends=[FuzzyNumbers ROI ROI_plugin_glpk]; };
 FuzzyNumbers = derive { name="FuzzyNumbers"; version="0.4-1"; sha256="15i0chp43y8xfyzkjrbljmdvgjjx9w1l5ayhvavk9y85pwb147b8"; depends=[]; };
 FuzzyStatProb = derive { name="FuzzyStatProb"; version="2.0.1"; sha256="0cj6dqb5iy4gw7kkip9jvk9djf6dx20078kmb42br8sim1065j8m"; depends=[DEoptim FuzzyNumbers MultinomialCI]; };
 FuzzyToolkitUoN = derive { name="FuzzyToolkitUoN"; version="1.0"; sha256="104s45mmlam67vwpshhpns2mgwvmhnbj8w1918jyk2r5mqibwz06"; depends=[]; };
@@ -705,7 +707,7 @@ GAabbreviate = derive { name="GAabbreviate"; version="1.0"; sha256="0c9407i6dq7p
 GB2 = derive { name="GB2"; version="2.1"; sha256="06rcck97pdm1rsb02cy0jd9fknv0mz5jwk364gsaahdk56ddk18a"; depends=[cubature hypergeo laeken numDeriv survey]; };
 GCAI_bias = derive { name="GCAI.bias"; version="1.0"; sha256="10092mwpmfbcga0n39a0i6g8xxch8xiwg15cckipw6yxjyx0sivc"; depends=[]; };
 GCD = derive { name="GCD"; version="3.0.5"; sha256="1ami5xw5xx464pxr9y1z9bb3dvj46vx3wrbh19w4g7sk8yjvh5nl"; depends=[]; };
-GCPM = derive { name="GCPM"; version="1.1.1"; sha256="1wm7nmqj88j1pd2s1lvi6z1fizm3q3cl7vbzp88vbhpij4rnk4jl"; depends=[Rcpp RcppProgress]; };
+GCPM = derive { name="GCPM"; version="1.2"; sha256="034vsy9kjag7c3mzgswbm356cyay908dwnxj63gd93aakknm120x"; depends=[Rcpp RcppProgress]; };
 GDAdata = derive { name="GDAdata"; version="0.93"; sha256="13ks97i289rc4i7gpqrifwbj0m9rx8csjhnfg8mad10qmjwz7p8b"; depends=[]; };
 GDAtools = derive { name="GDAtools"; version="1.3"; sha256="1av29mllix0az4n85vxh1344j6jmy103hd78ibjwxalm620rp7ns"; depends=[FactoMineR]; };
 GDELTtools = derive { name="GDELTtools"; version="1.2"; sha256="1rx6kjh7kmyycqapvbizcxkcfp09qvqv7k8f25v333sxkacpz6p5"; depends=[plyr TimeWarp]; };
@@ -723,8 +725,8 @@ GGally = derive { name="GGally"; version="0.5.0"; sha256="00ix8qafi71l7vhj6268f9
 GHQp = derive { name="GHQp"; version="1.0"; sha256="0qpcpwv7rz67qhz1p5k2im02jvs7l8z9sa6ypz13hig5fzm8j9bp"; depends=[statmod]; };
 GIGrvg = derive { name="GIGrvg"; version="0.3"; sha256="014srgh79g8y9fcj979v3md9qqx9i6b6fx6lw0r0qdrg4v6bvr76"; depends=[]; };
 GISTools = derive { name="GISTools"; version="0.7-4"; sha256="06alb5d2k4qj344i9cpgm3lz9m68rkmjqfx5k2hzn7z458xjrlxs"; depends=[maptools MASS RColorBrewer rgeos sp]; };
-GLDEX = derive { name="GLDEX"; version="2.0.0.2"; sha256="16vy50jgk9b57h9f48097m17zrla6ksmi3wm4z2yadfg81sg8721"; depends=[cluster]; };
-GLDreg = derive { name="GLDreg"; version="1.0.2"; sha256="179qjcsfgzcw39gmmwlz9h608cq865kz2lvh76dwgyyn519l3y8g"; depends=[GLDEX]; };
+GLDEX = derive { name="GLDEX"; version="2.0.0.3"; sha256="0ymarfwpm7gagq6wk40n0nsmd14r19pbqbrgigk6cvb8dc2zpbfz"; depends=[cluster]; };
+GLDreg = derive { name="GLDreg"; version="1.0.3"; sha256="0d7cclmmhgaf95bw738d8hz166qsr9df33g73ihy8pla3sg5lr7q"; depends=[GLDEX]; };
 GLSME = derive { name="GLSME"; version="1.0.2"; sha256="1zdqrji8x0f3wjl8bhpbnwdfklihv3ii20iz2y2gsm53yzw7dlwq"; depends=[corpcor mvtnorm]; };
 GMCM = derive { name="GMCM"; version="1.2.1"; sha256="1s45xmbx64h3sb10py8n444jpxcgsz4pc36cz3zinfq55amf8r6r"; depends=[Rcpp RcppArmadillo]; };
 GMD = derive { name="GMD"; version="0.3.3"; sha256="0hdya8ai210wxnkfra9bzyswk3gib5fm53fs61rh0nsmg3ysdga6"; depends=[gplots]; };
@@ -737,23 +739,23 @@ GPArotation = derive { name="GPArotation"; version="2014.11-1"; sha256="15jh5qqq
 GPC = derive { name="GPC"; version="0.1"; sha256="1naqy5g6a0z65wssfic5s7cw9v0zjckk526nian3l98ci22sz0j7"; depends=[ks lars orthopolynom randtoolbox]; };
 GPCSIV = derive { name="GPCSIV"; version="0.1.0"; sha256="118l792mwd54xsi3g8afg3vc6wds8j6fyaz3mwmq04mlcyblym4l"; depends=[scatterplot3d sqldf]; };
 GPFDA = derive { name="GPFDA"; version="2.2"; sha256="1xqk03g8b8hi1vdqh6a9wml8ln0ad6lmy14z8k8c4wdc5kbzdr0b"; depends=[fda fda_usc MASS spam]; };
-GPLTR = derive { name="GPLTR"; version="1.1"; sha256="0yp4b3ddvcd6s7rjpbmszl3a0x8qq6s138jjkm135yvbgp1jk5jz"; depends=[rpart]; };
-GPareto = derive { name="GPareto"; version="1.0.0"; sha256="0mzrl4xs7f5rkx0m4lkqy1456dnsa232hprmbg3bpris1rla780b"; depends=[DiceKriging emoa KrigInv MASS pbivnorm pso randtoolbox Rcpp rgenoud]; };
+GPLTR = derive { name="GPLTR"; version="1.2"; sha256="0b4s090jlp2qpqqr0b1ifwyf2fal156y7vg9mjkw53y623ms5pix"; depends=[rpart]; };
+GPareto = derive { name="GPareto"; version="1.0.1"; sha256="0wscalc855c99yzy3q154rxvhg0xmzy4a4x37jkf8f45n8sgviif"; depends=[DiceKriging emoa KrigInv MASS pbivnorm pso randtoolbox Rcpp rgenoud]; };
 GPfit = derive { name="GPfit"; version="1.0-0"; sha256="0g0g343ncqsqh88qq9qrf4xv5n3sa980kqbvklcx534dmn6a7n2i"; depends=[lattice lhs]; };
-GPlab = derive { name="GPlab"; version="0.1.0"; sha256="05lp5hm5f9pwqcw88x2206babb8yd0nw5smsd6j555qikx8nv88i"; depends=[MASS numDeriv Rcpp testthat]; };
 GPseq = derive { name="GPseq"; version="0.5"; sha256="0k5xif44qk2ppvcyja16xshmfciq1h84l1w6d8dfkyryfajbc8ai"; depends=[]; };
 GPvam = derive { name="GPvam"; version="3.0-2"; sha256="160j0zwbcmvzvia1b5p5midf395xfv1frk2w6w3v2zpbn8h6pdz5"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; };
+GRANBase = derive { name="GRANBase"; version="1.0.12"; sha256="1qfx2zp8vjyqx9rqz23kgl1dj7kz7qkligym8r2l41nc0hinijpi"; depends=[hwriter switchr XML]; };
 GRTo = derive { name="GRTo"; version="1.2"; sha256="0x65g8a39vrb8m3hqajxi0ksmdavz0p6mlamqprkdn9p6ikf5c73"; depends=[bootstrap]; };
 GRaF = derive { name="GRaF"; version="0.1-12"; sha256="1d7mr2z49v6ch4jbzh0dj2yjy2c5p51ws38xfz233sjz475snajr"; depends=[dismo]; };
 GSA = derive { name="GSA"; version="1.03"; sha256="1h1sbpn1rrdh44w4fx2avc7x24ba40mvpd8b2x5wfrc7a294zf6z"; depends=[]; };
 GSAgm = derive { name="GSAgm"; version="1.0"; sha256="18bhk67rpss6gg1ncaj0nrz0wbfxv7kvy1cxria083vi60z0vwbb"; depends=[edgeR survival]; };
-GSE = derive { name="GSE"; version="3.1"; sha256="08xr7w6dsmgs3l8ayihadcvwy0xdzn78fllxa42sk7nfz6waadr3"; depends=[ggplot2 MASS Rcpp RcppArmadillo]; };
+GSE = derive { name="GSE"; version="3.2"; sha256="1zfvwrz4argv47dvxy18bjx19yn0qlqgy501sllxhqxvd1f7780r"; depends=[ggplot2 MASS Rcpp RcppArmadillo rrcov]; };
 GSIF = derive { name="GSIF"; version="0.4-6"; sha256="00m5djgc443678nwnmvgqv070g67pbvp1ci1x8gp7van8knjn5zq"; depends=[aqp dismo gstat plotKML plyr raster rgdal RSAGA sp]; };
-GSM = derive { name="GSM"; version="1.3.1"; sha256="1ay6znw31qnhz5k6fa0aiccr2xxmnj7v3vzrvlk6y5v5smlvybd0"; depends=[gtools]; };
+GSM = derive { name="GSM"; version="1.3.2"; sha256="04xjs9w4gaszwzxmsr7657ry2ywa9pvpwpczpvinxi8vpj347jbb"; depends=[gtools]; };
 GUIDE = derive { name="GUIDE"; version="1.0.9"; sha256="1y0y6rwv1khd9bdaz5rl9nmxiangx0jckgihg16wb6hx6kf8kzc1"; depends=[rpanel tkrplot]; };
 GUILDS = derive { name="GUILDS"; version="1.2.1"; sha256="1z90qjgrx16yk956phbifcr7jd3w59h7akzz7p6g5ymrcjzih4qf"; depends=[pracma Rcpp subplex]; };
 GUIProfiler = derive { name="GUIProfiler"; version="0.1.2"; sha256="1k56clda6xr649xfacnigi3c2s7ih1whchwcfqm7aa2d44vv3axz"; depends=[MASS Nozzle_R1]; };
-GUTS = derive { name="GUTS"; version="0.9.3"; sha256="0gyi5vlr1r35qn3gj788lh9xrb7dz03r57hxk11x8w72kv415pih"; depends=[Rcpp]; };
+GUTS = derive { name="GUTS"; version="1.0.0"; sha256="0s64swhs7wpknvycca7qj36kj910anrh9qrbpyfjl9lw8cqa2058"; depends=[Rcpp]; };
 GUniFrac = derive { name="GUniFrac"; version="1.0"; sha256="0xr68yv3h2lwn7sxy8l5p9g1z3q9hihg9jamsyl70jj9b2ic80jn"; depends=[ape vegan]; };
 GWAF = derive { name="GWAF"; version="2.2"; sha256="11lk1dy24y1d0biihy2aypdvlx569lw1pfjs51m54rhgpwzkw6yd"; depends=[coxme geepack lme4]; };
 GWASExactHW = derive { name="GWASExactHW"; version="1.01"; sha256="19qmk8h7kxmn9kzw0x4xns5p3qqz27xkqq4q6zmh4jzizd0fsl78"; depends=[]; };
@@ -768,6 +770,7 @@ Gammareg = derive { name="Gammareg"; version="1.0"; sha256="1a5wibnbd8jg0v8577n1
 GenABEL = derive { name="GenABEL"; version="1.8-0"; sha256="0sd497qvik70iwv7wc8r50rhc5wx153pm8vif738wwqqp43chks3"; depends=[GenABEL_data MASS]; };
 GenABEL_data = derive { name="GenABEL.data"; version="1.0.0"; sha256="0p66fb0gynjx3mnfvnlz45cbn6xf49gwx9mfyxf584xfcggxaa1c"; depends=[]; };
 GenBinomApps = derive { name="GenBinomApps"; version="1.0-2"; sha256="1ps1rq8cjlwh658mysdh3xbn5fihanzcwxb38xvg4031vnwv80in"; depends=[]; };
+GenCAT = derive { name="GenCAT"; version="1.0.1"; sha256="1a6jjfynngcqqacmn8lpjyvm4681n691savz768g0xq7mf4cmijw"; depends=[doParallel dplyr foreach ggplot2]; };
 GenForImp = derive { name="GenForImp"; version="1.0"; sha256="1wcvi52fclcm6kknbjh4r9bpkc2rg8nk6cddnf5j8zqbvrwf4k5x"; depends=[mvtnorm sn]; };
 GenKern = derive { name="GenKern"; version="1.2-60"; sha256="12qmd9ydizl7h178ndn25i4xscjnrssl5k7bifwv94m0wrgj4x6c"; depends=[KernSmooth]; };
 GenOrd = derive { name="GenOrd"; version="1.3.0"; sha256="07ll15fqcfvrbsd8psbvn9569hcmvghwadzb3h9qxh6pxnl9i5qd"; depends=[MASS Matrix mvtnorm]; };
@@ -794,7 +797,7 @@ GillespieSSA = derive { name="GillespieSSA"; version="0.5-4"; sha256="0bs16g8vm9
 Giza = derive { name="Giza"; version="1.0"; sha256="13nkm8mk1v7s85kmp6psvnr1v97vi0gid8rsqyq3x6046pyl5z6v"; depends=[lattice reshape]; };
 GlobalDeviance = derive { name="GlobalDeviance"; version="0.4"; sha256="0s318arq2kmn8fh0rd5hd1h9wmadr9q8yw8ramsjzvdc41bxqq1a"; depends=[snowfall]; };
 GlobalFit = derive { name="GlobalFit"; version="1.0"; sha256="0cx4jpr5yhjdqbvnswqjwx7542mnmk73dy99klwg8bsz0c36ii5k"; depends=[sybil]; };
-GlobalOptions = derive { name="GlobalOptions"; version="0.0.6"; sha256="0g10zf3hn4ns7faffqzc9xbscz9p84vcqhlg4jp9jl063ma2pvqm"; depends=[]; };
+GlobalOptions = derive { name="GlobalOptions"; version="0.0.7"; sha256="1vg948xh0ndwkspbf5qb00b28fy9ygda55m5fq8bspq9d2y3c0pc"; depends=[]; };
 Gmisc = derive { name="Gmisc"; version="1.1"; sha256="1dcnnsjxap50zfx984rxgksjcvqgbb9zxxd03186h4669slh1d0d"; depends=[abind forestplot Hmisc htmlTable knitr lattice magrittr Rcpp]; };
 GoFKernel = derive { name="GoFKernel"; version="2.0-5"; sha256="030gcj608nkalscjqs2ad73pwhk4gp5gl1lvm4mc9b39jhki0r70"; depends=[KernSmooth]; };
 GrammR = derive { name="GrammR"; version="1.0.1"; sha256="1dhq4srzxbdbym89dy4gh0c4jjfkljxdnriv4v0yh9g688my1gvn"; depends=[ape cluster GUniFrac gWidgets gWidgetsRGtk2 MASS rgl RGtk2]; };
@@ -803,7 +806,7 @@ GrapheR = derive { name="GrapheR"; version="1.9-84"; sha256="1wwks2a4vzhj1rcspiz
 GrassmannOptim = derive { name="GrassmannOptim"; version="2.0"; sha256="05r5zg4kf3xd6pp56bl8ldchdxvspxkdfd33b623hndjhn4lj2lq"; depends=[Matrix]; };
 Grid2Polygons = derive { name="Grid2Polygons"; version="0.1-5"; sha256="18hgyx8a75allldsc2ih5i1p7ajkwj2x020cfd2hp18zrc4qyp5n"; depends=[rgeos sp]; };
 GriegSmith = derive { name="GriegSmith"; version="1.0"; sha256="1a7gnaig1wvxpph7d8c37kx51dznzk0457fzf7alw95iwpyb4z7j"; depends=[spatstat]; };
-GroupSeq = derive { name="GroupSeq"; version="1.3.2"; sha256="16n06jw7f97jhafgl9sfvd163v1walhlpmai1hmhiwjvv341sp13"; depends=[]; };
+GroupSeq = derive { name="GroupSeq"; version="1.3.3"; sha256="0abb18w9jylb1nf6yc6xic6b01f8zfxsm8hsmxk4whivn17ckfp9"; depends=[]; };
 GuardianR = derive { name="GuardianR"; version="0.5"; sha256="0m5arxz4ih84zg8sf2wy2kg38adraa098gb52vwz93dzdm1dhslw"; depends=[RCurl RJSONIO]; };
 Guerry = derive { name="Guerry"; version="1.6-1"; sha256="1hpp49w2kd1npsd709cwg125pw6mrqxfv2nn3lcs1mg2r49ki2bl"; depends=[]; };
 GxM = derive { name="GxM"; version="1.1"; sha256="02rv8qb46ylk22iqn9cgh63vkyrg9a8nr1d0d3j5hqhi0wyhc41r"; depends=[minqa nlme Rcpp]; };
@@ -813,17 +816,17 @@ HAPim = derive { name="HAPim"; version="1.3"; sha256="03qy0pxazv3gdq3fck7171ixil
 HBSTM = derive { name="HBSTM"; version="1.0.1"; sha256="0bx7dxcfj46k4kqpqb39w4qkm4hvr1ka8d8rws445vkyl31kr0q6"; depends=[fBasics maps MASS]; };
 HDMD = derive { name="HDMD"; version="1.2"; sha256="0na0z08fdf47ghfl2r3fp9qg5pi99kvp7liymwxym2wglkwl4chq"; depends=[MASS psych]; };
 HDPenReg = derive { name="HDPenReg"; version="0.91"; sha256="0q63pm39ivka64f7rhad6bv0yr1b2b3241ln8gqfnal25qw31w82"; depends=[rtkpp]; };
-HDclassif = derive { name="HDclassif"; version="1.2.3"; sha256="1ss30cjq352cr3v5blpdywycfv2ik200mvj54y8qihc811mash6h"; depends=[MASS]; };
+HDclassif = derive { name="HDclassif"; version="1.3"; sha256="1b80dnaa6m4px0ijpd9yf45v8jl0b9srcmrdyar8fs7lxpc53k2l"; depends=[MASS]; };
 HDtweedie = derive { name="HDtweedie"; version="1.1"; sha256="14awd7sws0464f68f5xwnv1xvr0xflvx2z2zzcfj1csvk3af0zzj"; depends=[]; };
 HEAT = derive { name="HEAT"; version="1.2"; sha256="1qifqd06ifl0f5l44mkxapnkwhpm0b82yq6dhfw4f8yhb27wd0z2"; depends=[]; };
 HGNChelper = derive { name="HGNChelper"; version="0.3.1"; sha256="0vidw7gdvr0i4l175ic5ya8q2x2jj0v2vc7fagzrp2mcy7fn1y6a"; depends=[]; };
 HH = derive { name="HH"; version="3.1-19"; sha256="0hm8fk0wqfhkrjm3ycpxd4i8wwm9hi8ihy45a3wayp0p6lqv4rpp"; depends=[abind colorspace gridExtra Hmisc lattice latticeExtra leaps multcomp RColorBrewer reshape2 Rmpfr shiny vcd]; };
-HHG = derive { name="HHG"; version="1.4"; sha256="048jbwhrbgp1pv2j6sw234ykdn7bgpa49slwh3p5547nl2cwjysg"; depends=[]; };
+HHG = derive { name="HHG"; version="1.5"; sha256="0azgl9q3fhaxrjji63kai49jkybdyq1v0ql2jqmg98hynx6s31db"; depends=[]; };
 HI = derive { name="HI"; version="0.4"; sha256="0i7y4zcdr6wcjy43lz9h8glzpdv0pz7livr95xb1j4p8zafykday"; depends=[]; };
 HIV_LifeTables = derive { name="HIV.LifeTables"; version="0.1"; sha256="0qa5n9w5d5l1kr4827a34581q380xmpyzmmhhl300z1jwr0j94df"; depends=[]; };
 HIest = derive { name="HIest"; version="2.0"; sha256="0ik55kxhzjyg6z6072iz9nfaj7x1nvf91l1kysgvkjccr6jf3y86"; depends=[nnet]; };
 HK80 = derive { name="HK80"; version="0.0.1"; sha256="1qhknrqpspxrdxzf5kakans94db58bbhgpblvpwcyw4jrjmm0ng7"; depends=[]; };
-HLMdiag = derive { name="HLMdiag"; version="0.2.5"; sha256="1yim9m5q1m112aj7zhsw345l32bdj7lbw2mqpcxhjzv1lcknm5lq"; depends=[ggplot2 lme4 MASS Matrix plyr Rcpp RcppArmadillo reshape2]; };
+HLMdiag = derive { name="HLMdiag"; version="0.3.0"; sha256="01j50dwab59467xm2fz5yfp9rn6pxf0isphsczvwmxnyvqw45qxw"; depends=[ggplot2 MASS Matrix mgcv plyr Rcpp RcppArmadillo reshape2 RLRsim]; };
 HLSM = derive { name="HLSM"; version="0.4"; sha256="115215fiaib6ndvzb3gn80l636ddxp0dxrnph8pnh16b3b6q2jnk"; depends=[coda MASS]; };
 HMM = derive { name="HMM"; version="1.0"; sha256="0z0hcqfixx1l2a6d3lpy5hmh0n4gjgs0jnck441akpp3vh37glzw"; depends=[]; };
 HMMCont = derive { name="HMMCont"; version="1.0"; sha256="1drni4f72x83sprn65wnhw0pv1q8lfkgmxdr9h4rwv1accril85x"; depends=[]; };
@@ -842,29 +845,28 @@ HTSCluster = derive { name="HTSCluster"; version="2.0.4"; sha256="1kvq118hqxc81n
 HUM = derive { name="HUM"; version="1.0"; sha256="1bq74l88jvscmq9ihv5wn06w2wng073ybvqb2bdx2dmiqlpv6jw2"; depends=[gtools Rcpp rgl]; };
 HW_pval = derive { name="HW.pval"; version="1.0"; sha256="14nmyqw2d9cmn64789yc54fmiqanh6n1dizp7vj94h7b0jwq63yy"; depends=[]; };
 HWEBayes = derive { name="HWEBayes"; version="1.4"; sha256="1rbffx6pn031a278ps9aqxcaq8yi73s5kf60za143ysbfxv9dphw"; depends=[MCMCpack mvtnorm]; };
-HWEintrinsic = derive { name="HWEintrinsic"; version="1.2.1"; sha256="1sg5lrc6kl5rr6f5awp100qpd1679745kixasiddiggzd8fhgb7q"; depends=[]; };
+HWEintrinsic = derive { name="HWEintrinsic"; version="1.2.2"; sha256="035r5bi7m66g351cmrfmf4cj5qqm4fn5pgy3lzsp3gyp2dv0rkg5"; depends=[]; };
 HWxtest = derive { name="HWxtest"; version="1.0.5"; sha256="01pvi87g5sfglbdv38ik9f47fah3gs7d75d6kgn5xkjb6b2af9d7"; depends=[]; };
 HadoopStreaming = derive { name="HadoopStreaming"; version="0.2"; sha256="1l9msaizjvnsj1jrpghj4g057qifdgg6vbqhfxhn1fiqdqi2056q"; depends=[getopt]; };
-HandTill2001 = derive { name="HandTill2001"; version="0.2-9"; sha256="1j4ivxarm3k9sj05824lv6b03apyabpciv4mp253vv0yzjcp2bzf"; depends=[]; };
+HandTill2001 = derive { name="HandTill2001"; version="0.2-10"; sha256="02y18dwz06wba4a3d247ib2csgjpw6i67fh5np2fla00qw0f8qc9"; depends=[]; };
 Hankel = derive { name="Hankel"; version="0.0-1"; sha256="0g3b0ji8hw29k0wxxvlnbcm0z91p4vbajbrhm6cqbccjq85lg4si"; depends=[]; };
 HapEstXXR = derive { name="HapEstXXR"; version="0.1-8"; sha256="00p8pziy8q6vki7brpd57c7ckc9zw41c90h47yp9vb3ndanfqavp"; depends=[survival]; };
 Haplin = derive { name="Haplin"; version="5.5"; sha256="12wkj5x1s920xs0xzhxk0dswmwan7x20fw5sj6cx29n013h1gkam"; depends=[DatABEL GenABEL MASS mgcv snow SuppDists]; };
 HaploSim = derive { name="HaploSim"; version="1.8.4"; sha256="0794f76hc9qvjmay7c61cmzycqafljs0g0hliq9xfrw4f23gq3sa"; depends=[]; };
 HardyWeinberg = derive { name="HardyWeinberg"; version="1.5.5"; sha256="1kz12301bi2880i9ds7wvc6yb5hvrs3fr5689fm1yygkqfq8zc56"; depends=[mice]; };
 HarmonicRegression = derive { name="HarmonicRegression"; version="1.0"; sha256="0inz3l610wl0ibqjyrhfbmwmcfzcmcfhixai4lpkbfsyx93z2i4d"; depends=[]; };
-HelpersMG = derive { name="HelpersMG"; version="1.1"; sha256="0pk8bcad9dnza803cq1428qlgb74vzq0vzx2q6f2j2hwmfpn13dx"; depends=[coda]; };
+HelpersMG = derive { name="HelpersMG"; version="1.2"; sha256="1a9b7j53a8xfxc5dmm6m5f0ac2mir8yzkhg0fgah4gvbivaaz6nb"; depends=[coda]; };
 HiClimR = derive { name="HiClimR"; version="1.2.1"; sha256="12qq3w20xzw2ih15hw5pzn0h58wv8rczhb4zxcdzc7zbg6i8qas4"; depends=[]; };
 HiCseg = derive { name="HiCseg"; version="1.1"; sha256="19581k3g71wrznyqrp4hmspqyzcbcfbc48xgjlq13zmqii45hcn6"; depends=[]; };
 HiDimDA = derive { name="HiDimDA"; version="0.2-3"; sha256="0pk7hf8cnwv22p5cbpsh5wd94i1an87ddv80qycgypx4wi0v57hh"; depends=[]; };
 HiDimMaxStable = derive { name="HiDimMaxStable"; version="0.1.1"; sha256="0gscdjm48yyf8h3bn6xjbjlfc1hwbbh5j6v64c0z3d04h9q35c24"; depends=[copula maxLik mnormpow mnormt partitions VGAM]; };
 HiLMM = derive { name="HiLMM"; version="1.1"; sha256="09135cwi6kqrvzdlivm86q1dqn6cbbi6nspdm0c2s700jl49pl5z"; depends=[]; };
 HiPLARM = derive { name="HiPLARM"; version="0.1"; sha256="0af68gfmc89nn1chmqay6ix0zygcp1hmylj02i7l6rx6vb06qw6w"; depends=[Matrix]; };
-HiddenMarkov = derive { name="HiddenMarkov"; version="1.8-3"; sha256="1bgkzj9lmv0rbi5a77brw7w69k2w611jh3d851lfqnwx6gxgzkmc"; depends=[]; };
+HiddenMarkov = derive { name="HiddenMarkov"; version="1.8-4"; sha256="1w3j4dnf6ay0a17kn8zdzy38wind4pqfnwlndf9m9fj8m2scaay8"; depends=[]; };
 HierO = derive { name="HierO"; version="0.2"; sha256="1lqj5grjly4kzxl7wb192aagz2kdvpnjdan2kcg5yxwvg1xcvwv1"; depends=[bitops RCurl rneos tcltk2 XML]; };
 HighDimOut = derive { name="HighDimOut"; version="1.0.0"; sha256="0r7mazwq4fsz547d3nyavmqya7144lg3fkl5f7amrp48l9h85vx2"; depends=[DMwR FNN foreach ggplot2 plyr proxy]; };
 HistDAWass = derive { name="HistDAWass"; version="0.1.2"; sha256="16c4b9nfl6rbca7zifb2q3c5x60rmj32913hw1f79xs9ffdrnkwr"; depends=[class FactoMineR ggplot2 histogram]; };
 HistData = derive { name="HistData"; version="0.7-5"; sha256="17s64hfs7r77p0wjzpbgz9wp3gjzbly2d0v784f9m2bka8gj6xhr"; depends=[]; };
-HistogramTools = derive { name="HistogramTools"; version="0.3.1"; sha256="0cc3saly5q2kn1gr2mam7g901ddcipmlrn1m0amgrnbkakby2320"; depends=[ash Hmisc stringr]; };
 HiveR = derive { name="HiveR"; version="0.2-28"; sha256="1zz1cg7cf4yyv1bymqlyh50nzj5lgdv4clzm0l2vladcxzjvgk8c"; depends=[jpeg plyr png RColorBrewer rgl tkrgl xtable]; };
 Hmisc = derive { name="Hmisc"; version="3.16-0"; sha256="03d372bld4mikyrvmfw00ljiz6jf7szkmhrlgxs5vqk3v81kkp2f"; depends=[acepack cluster foreign Formula ggplot2 gridExtra gtable lattice latticeExtra nnet proto rpart scales survival]; };
 Holidays = derive { name="Holidays"; version="1.0-6"; sha256="031vddjf7s3pirv041y2mw694db63gjajlbczmmya8b1zp2f3vzk"; depends=[TimeWarp]; };
@@ -873,6 +875,7 @@ HotDeckImputation = derive { name="HotDeckImputation"; version="1.0.0"; sha256="
 Hotelling = derive { name="Hotelling"; version="1.0-2"; sha256="0dzsqnn4c4av23qjnmacwc78i0xg355p1xwfmgipr04ivym0mqn0"; depends=[corpcor]; };
 HyPhy = derive { name="HyPhy"; version="1.0"; sha256="0994ymv7sswbp8qw3pay34s926cflw2hq2gnchw7rknybvlsrinq"; depends=[ape R_utils]; };
 HybridMC = derive { name="HybridMC"; version="0.2"; sha256="1wgzfyk0scwq9s2sdmc91fj7r4d7zlgwgnj6mdiia8w88ja8kzqy"; depends=[coda]; };
+HydeNet = derive { name="HydeNet"; version="0.9.0"; sha256="1bb238yv1c93gdlnwjly9sncx9227n4a2qibxkdkqhprwsr241h3"; depends=[broom DiagrammeR dplyr graph gRbase magrittr nnet plyr rjags stringr]; };
 HydroMe = derive { name="HydroMe"; version="2.0"; sha256="1a1d3lay94mzwk8n22l650h3p133npdf4aj63zgrdw4760p54rqf"; depends=[minpack_lm nlme]; };
 HyperbolicDist = derive { name="HyperbolicDist"; version="0.6-2"; sha256="1wgqbx9ascyk6gw1dmvfz6hljvbh49gb9shr9qgf22qbq83waiva"; depends=[]; };
 IASD = derive { name="IASD"; version="1.0.7"; sha256="0a25sd82fxnmz3f4iaxhc69cdfb7xmh7wi79wv11sbw9cv2pl7kr"; depends=[]; };
@@ -880,12 +883,12 @@ IAT = derive { name="IAT"; version="0.2"; sha256="0byivq2298sjvpsz5z1w7r31h6z2jq
 IATscores = derive { name="IATscores"; version="0.1-2"; sha256="0grl5m4ccwaxvhg1bziy3vv5jffkvr24z268ws5m4ia20haif0dm"; depends=[dplyr nem qgraph reshape2 stringr]; };
 IBDLabels = derive { name="IBDLabels"; version="1.1"; sha256="1m9fd058yjxva6hin7i72i2nl285wfm0jkdn5xcng27yqlijyrm9"; depends=[]; };
 IBDhaploRtools = derive { name="IBDhaploRtools"; version="1.8"; sha256="1754239pdil6b383mpzyi8zb9l9hzg15dwgn5246v97g1y3mlp5r"; depends=[]; };
-IBDsim = derive { name="IBDsim"; version="0.9-4"; sha256="0cpabz7mnhsrmjrgb23zs5anjrkhwc2005b2inl6p93l47i81fps"; depends=[paramlink]; };
+IBDsim = derive { name="IBDsim"; version="0.9-5"; sha256="0mhn1byrx98892gy30dar69pp3cnfwpzkl86gzqyjcxa2d9zpc77"; depends=[paramlink]; };
 IBHM = derive { name="IBHM"; version="1.1-11"; sha256="1m0zxlybcak2v5c4spgaa39ngb2hryak4xd875jryk1dcnk9c702"; depends=[cmaes DEoptim Rcpp]; };
 IBrokers = derive { name="IBrokers"; version="0.9-12"; sha256="0mhh4kgwrncrcysvnvah6xc7fhx5ywjzn258cs9xj9kzns0jblk6"; depends=[xts zoo]; };
 IC2 = derive { name="IC2"; version="1.0-1"; sha256="03jjb62msxjxdg9l3zd1ns0d2w37hkxy5pnjgaywxw3vfk4zwfj9"; depends=[]; };
 ICAFF = derive { name="ICAFF"; version="1.0.1"; sha256="0zazx4nv81s75appg10aayks04mx6m5n9yf5hqrbxh3yj68vzxfy"; depends=[]; };
-ICC = derive { name="ICC"; version="2.2.1"; sha256="1xl8x8ddbrk8ma57mybmmv9m096wlpbas7hsmd2c6qzcrlz6i7wa"; depends=[]; };
+ICC = derive { name="ICC"; version="2.3.0"; sha256="0y8zh9715cp9bglxpygqwgigrarq37sj845lk1xl0ydwinl0a6kk"; depends=[]; };
 ICE = derive { name="ICE"; version="0.69"; sha256="04p8lakaha28mdh965w0ppyxfrz5ssi1n9xifvsbn3ihdra67rip"; depends=[KernSmooth]; };
 ICEbox = derive { name="ICEbox"; version="1.0"; sha256="1m3p0b93ksrcsp45m4gszcz01cwbfpj4ldar6l0q3c9lmyqsznx8"; depends=[sfsmisc]; };
 ICEinfer = derive { name="ICEinfer"; version="1.0-1"; sha256="0gjgr1r33w6d5ra0njh15lj46lw6v751yl8iqrdf4a5pazs7w3lm"; depends=[lattice]; };
@@ -923,7 +926,7 @@ IntLik = derive { name="IntLik"; version="1.0"; sha256="13ww5bsbf1vnpaip0w53rw99
 InterVA4 = derive { name="InterVA4"; version="1.5"; sha256="0w2klq9dara941d4xz85qrq8dcp7vpc6rrz2k9ry01rsnpdzzybh"; depends=[]; };
 Interact = derive { name="Interact"; version="1.1"; sha256="1g9zhafdpr7j410bi8p03d8x9f8m3n329x8v01yk15f65fp7pl1d"; depends=[]; };
 InteractiveIGraph = derive { name="InteractiveIGraph"; version="1.0.6.1"; sha256="0srxlp77xqq0vw2phfv7zcnqswi2i5nzkpqbpa5limqx00jd12zy"; depends=[igraph]; };
-Interatrix = derive { name="Interatrix"; version="1.0"; sha256="1lkkjckxc0fc8hg1livgzrgphqwcp53cib0r0vii5jp4zkcna595"; depends=[MASS tkrplot]; };
+Interatrix = derive { name="Interatrix"; version="1.1.1"; sha256="1ljxgiia0y8wv1rlm5brd0yvs1r7r5wyrs6nykmwrwwya4k34mpz"; depends=[MASS tkrplot]; };
 Interpol = derive { name="Interpol"; version="1.3.1"; sha256="1598lnnrcxihxysdljphqxig15fd8z7linw9byjmqypwcpk6r5jn"; depends=[]; };
 Interpol_T = derive { name="Interpol.T"; version="2.1.1"; sha256="1fbsl1ypkc65y6c0p32gpi2a2aal8jg02mclz7ri57hf4c1k09gz"; depends=[chron date]; };
 InvariantCausalPrediction = derive { name="InvariantCausalPrediction"; version="0.3-3"; sha256="00sxfgnzqikp92haqnqi4asq904dcsqqnxmz23lx7508qbfx3vhn"; depends=[glmnet mboost]; };
@@ -940,7 +943,7 @@ JASPAR = derive { name="JASPAR"; version="0.0.1"; sha256="0wiyn7cz45hwy9zkvacx28
 JBTools = derive { name="JBTools"; version="0.7.2.9"; sha256="0bynqn3daqgmi3l9asy34mfwyfjkn35k465dfqqi3xwx6cbzlg5k"; depends=[colorspace foreach gplots plotrix]; };
 JGL = derive { name="JGL"; version="2.3"; sha256="1351iq547ln06nklrgx192dqlfnn03hkwj3hrliqzfbmsls098qc"; depends=[igraph]; };
 JGR = derive { name="JGR"; version="1.7-16"; sha256="0iv659mjsv7apzpzvmq23w514h6yq50hi70ym7jrv948qrzh64pg"; depends=[iplots JavaGD rJava]; };
-JM = derive { name="JM"; version="1.3-0"; sha256="0yn33dvy9kp7xaxlqk11f86qaichdcxpmq04gpnbcs8w8cdjjz3m"; depends=[MASS nlme survival]; };
+JM = derive { name="JM"; version="1.4-0"; sha256="0s23cfr3hinsg5g786ya9yhff6ylgnki6y7sgjf9pgr8fjfcq53s"; depends=[MASS nlme survival]; };
 JMbayes = derive { name="JMbayes"; version="0.7-2"; sha256="087brgljj158my1xc0vmbjkh4hqr0509zf8j4fq1b9lj52z7rdl5"; depends=[MASS nlme survival]; };
 JMdesign = derive { name="JMdesign"; version="1.1"; sha256="0w5nzhp82g0k7j5704fif16sf95rpckd76jjz9fbd71pp2d80vlh"; depends=[]; };
 JOP = derive { name="JOP"; version="3.6"; sha256="1kpb1dy2vm4jgzd3h0qgdw53nfp2qi74hgq5l5inxx4aayncclk7"; depends=[dglm Rsolnp]; };
@@ -954,7 +957,7 @@ JointRegBC = derive { name="JointRegBC"; version="0.1.1"; sha256="0w7ygs3pvlqkkb
 Julia = derive { name="Julia"; version="1.1"; sha256="0i1n150d89pkds7qyr0xycz6h07zikb2y07d5fcpaqs4446a8prg"; depends=[]; };
 KANT = derive { name="KANT"; version="2.0"; sha256="169j72pmdkcj6hv8qgmc02aps0ppvvl1vnr1hzrb1gsf7zj7bs3y"; depends=[affy Biobase]; };
 KATforDCEMRI = derive { name="KATforDCEMRI"; version="0.740"; sha256="1k8fihd9m26k14rvc5d5x0d9xc3mh8d49hs64p55np1acqfhg2sy"; depends=[locfit matlab R_matlab]; };
-KFAS = derive { name="KFAS"; version="1.1.1"; sha256="16r86kcx5av11j1p0dad8qvcj4dszh3kvcy8zp7kaw247kjvr3pv"; depends=[]; };
+KFAS = derive { name="KFAS"; version="1.1.2"; sha256="18mv0azijcfl4gzalvrh0cavd6svjkr8mdnl9jl6bppvann4dri3"; depends=[]; };
 KFKSDS = derive { name="KFKSDS"; version="1.6"; sha256="1g11f936p554bfxlm4slxhfxki5vqkks1mrbqw4w83v2rcb50f8d"; depends=[]; };
 KMDA = derive { name="KMDA"; version="1.0"; sha256="0x4kjjdd59wvgg699vrj99wqg3s1qbkbskis1c34xv9b8bzcv94j"; depends=[]; };
 KMsurv = derive { name="KMsurv"; version="0.1-5"; sha256="0hi5vvk584rl70gbrr75w9hc775xmbxnaig0dd6hlpi4071pnqjm"; depends=[]; };
@@ -964,7 +967,7 @@ KRLS = derive { name="KRLS"; version="0.3-7"; sha256="0dx4b68xx3saqlkbpvvrhxjscl
 KappaGUI = derive { name="KappaGUI"; version="1.2"; sha256="014d3lshq3avrncd8ydjpn59zalq46v29jrlz3g76wzr96xf5ckr"; depends=[irr]; };
 KappaV = derive { name="KappaV"; version="0.3"; sha256="13mmfb8ijpgvzfj20andqb662950lp9g25k5b26r5ba65p7nhva7"; depends=[maptools PresenceAbsence rgeos sp]; };
 Kendall = derive { name="Kendall"; version="2.2"; sha256="0z2yr3x2nvdm81w2imb61hxwcbmg14kfb2bxgh3wmkmv3wfjwkwn"; depends=[boot]; };
-KernSmooth = derive { name="KernSmooth"; version="2.23-14"; sha256="1dl22pncdlrlysmny0q89yg1s6iafdh75dh31l2hjy16gzlrbhk0"; depends=[]; };
+KernSmooth = derive { name="KernSmooth"; version="2.23-15"; sha256="1xhha8kw10jv8pv8b61hb5in9qiw3r2a9kdji3qlm991s4zd4wlb"; depends=[]; };
 KernSmoothIRT = derive { name="KernSmoothIRT"; version="6.1"; sha256="1hq4sykddh9sg24qrnccii89nqxmq7hnldhn8wl6y62aj0h1nrqm"; depends=[plotrix Rcpp rgl]; };
 Kernelheaping = derive { name="Kernelheaping"; version="0.9"; sha256="0x42cv28c074zcb023plb3pw5ffrihwbl1jlwm2f4h68q84ra3a4"; depends=[evmix ks MASS plyr sparr]; };
 Kmisc = derive { name="Kmisc"; version="0.5.0"; sha256="0pbj3gf0bxkzczl6k4vgnxdss2wmsffqvcf73zjwvzvr8ibi5d95"; depends=[data_table knitr lattice markdown Rcpp]; };
@@ -997,6 +1000,7 @@ LMest = derive { name="LMest"; version="2.1"; sha256="1jbwbmamgxbbipzdpjmr7l9csy
 LOGICOIL = derive { name="LOGICOIL"; version="0.99.0"; sha256="1wgg7kigzzk5ghjn3hkjf1bb8d6mvjfmkwq64phri5jpxd742ps9"; depends=[nnet]; };
 LOST = derive { name="LOST"; version="1.1"; sha256="19ar85dykbz0jlzbhlm3pcpffj4cizc6sj3gn93qdvpxkp64jfq9"; depends=[e1071 gdata MASS miscTools pcaMethods shapes]; };
 LPCM = derive { name="LPCM"; version="0.44-8"; sha256="14627wk5azxm3y3a0qfy4qz57nxbdcasnv7djpqhk2gxf5smq19k"; depends=[]; };
+LPM = derive { name="LPM"; version="2.5"; sha256="0n9h4zicqa13p40axhdyic7067ap9vw6hcg58n6af8qb1g3xdi8w"; depends=[fracdiff MASS]; };
 LPS = derive { name="LPS"; version="1.0.10"; sha256="0gf3jmhfki01z8fm5xdx59gxvhgzqd10x2iwa8369iz9dvwbjk8j"; depends=[]; };
 LPStimeSeries = derive { name="LPStimeSeries"; version="1.0-5"; sha256="0jmcy8076w4bzfnxaq2m3s60c1wdmywkwzfyrc19wdm8idf666wh"; depends=[RColorBrewer]; };
 LPTime = derive { name="LPTime"; version="1.0-2"; sha256="08lb6884kj9pg12mzx67fdnqb86x5s6yzb72hh3nrz50awj1f8nn"; depends=[orthopolynom]; };
@@ -1006,11 +1010,11 @@ LS2Wstat = derive { name="LS2Wstat"; version="2.0-3"; sha256="0wkh1a6xbp3qg5favx
 LSAfun = derive { name="LSAfun"; version="0.4"; sha256="178lbk5f2vjcpxand15l1dlqf77zkxap22i9lid5db1bmqh9rpk9"; depends=[lsa rgl]; };
 LSC = derive { name="LSC"; version="0.1.5"; sha256="1nlnwqb24sbgvl96azh8a833ij5xknjr2wr8shs59lm2n63a3ql9"; depends=[fields gam LICORS Matrix RColorBrewer]; };
 LSD = derive { name="LSD"; version="3.0"; sha256="069p33aw6iwikp82b7b8wa77wlyjqwr4hcwvrgaxgwqdgn6jjg3k"; depends=[]; };
+LSDinterface = derive { name="LSDinterface"; version="0.2.1"; sha256="1n8ynb99avn6nlhfnl1k8yn5qywhgin67fzk7b7c4b2dd3bhjd3w"; depends=[abind]; };
 LSMonteCarlo = derive { name="LSMonteCarlo"; version="1.0"; sha256="0w5042phkba5dw92r67ppp2s4khjpw5mm701dh9dya9lhj88bz6s"; depends=[fBasics mvtnorm]; };
 LTPDvar = derive { name="LTPDvar"; version="1.2"; sha256="0r9v5g5y9n85jdcvm7zpapm73ism48m3mmybpcmgcs028h2ndv7v"; depends=[]; };
 LTR = derive { name="LTR"; version="1.0.0"; sha256="15g5hbrwhab80sarbjgwzvsn6c4fl18h014kz5fpzf0n1rijybik"; depends=[]; };
 LVMMCOR = derive { name="LVMMCOR"; version="0.01.1"; sha256="1lq4hqcg0qkywdr4a22m1fr3m97749mm6n2jzdj9i7jrf0agc1fs"; depends=[MASS nlme]; };
-LVQTools = derive { name="LVQTools"; version="1.2"; sha256="06mninrrr49xsh00gfsp0vc418r6pdvq3m6sbnj0ywdyki106mni"; depends=[]; };
 LaF = derive { name="LaF"; version="0.6.2"; sha256="180xsqilpkql8my0dimsxj1kpmb3jl19l6bz8li8m63zii4xmwmp"; depends=[Rcpp]; };
 Lahman = derive { name="Lahman"; version="3.0-1"; sha256="0w7vp3vjxhigyyqmmka4bw5v4pp5z3jzmf0krq8biwzrpx5qp86x"; depends=[]; };
 LakeMetabolizer = derive { name="LakeMetabolizer"; version="1.3.3"; sha256="06mgn5dgdw0gaw1za20cabs4bx6q5bgv0x09imxhskik76kini01"; depends=[plyr rLakeAnalyzer]; };
@@ -1020,7 +1024,7 @@ Laterality = derive { name="Laterality"; version="0.9.3"; sha256="0pl5bfbkzhgxjj
 LatticeKrig = derive { name="LatticeKrig"; version="3.4"; sha256="0qa16sxzj40nk4kmzcb7n4xxn7bqlkx7ar66qpqvh2dvcvi1d70d"; depends=[fields spam]; };
 LeLogicielR = derive { name="LeLogicielR"; version="1.2"; sha256="0h52pzrksi1mn55mnxbfi61hl7x61cnkhp450slfrk68f6kp30x6"; depends=[gdata IndependenceTests RColorBrewer xtable]; };
 LeafAngle = derive { name="LeafAngle"; version="1.2-1"; sha256="0g3i5300f3rvjz7g7z8s5n8xdcsp41gf1vnr4g36m1likddfpxlx"; depends=[]; };
-LeafArea = derive { name="LeafArea"; version="0.1.0"; sha256="0gl31iv1pqb9w352h70y4x57dgfs4v15391fyhsc221803hk2fdn"; depends=[]; };
+LeafArea = derive { name="LeafArea"; version="0.1.1"; sha256="0k085idzs2ka8pqlmii5xcmbv7wm3syicy36gc183wycibv3ii9f"; depends=[]; };
 LearnBayes = derive { name="LearnBayes"; version="2.15"; sha256="0cz2rgqy1cmdz2h1qbdvfqxmmdzmg2z1scdlxr7k385anha13ja5"; depends=[]; };
 LiblineaR = derive { name="LiblineaR"; version="1.94-2"; sha256="11q3xydd4navpfcy9yx0fld8ixb6nvnkc7qxwrhvackiy810q86i"; depends=[]; };
 LifeTables = derive { name="LifeTables"; version="0.2"; sha256="1n4mqypxm0rbi77ykpr6bpzxfxvq8mm9bmfvcqz7k3ajb78cdr0d"; depends=[mclust]; };
@@ -1029,30 +1033,30 @@ LinRegInteractive = derive { name="LinRegInteractive"; version="0.3-1"; sha256="
 LindenmayeR = derive { name="LindenmayeR"; version="0.1.4"; sha256="05aq7qmzb7a6kw24pwlg78ch17y945ggrxqn7l2rypn1vfm0br9x"; depends=[stringr]; };
 LinearizedSVR = derive { name="LinearizedSVR"; version="1.3"; sha256="0h3xmlnd5x37r5hdhcz90z5n1hsbr2ci3m939i89p1x9644i2l5g"; depends=[expectreg kernlab LiblineaR]; };
 Lmoments = derive { name="Lmoments"; version="1.1-6"; sha256="0jffnlamll5mwxrfqrb1qr8kjcn40y57kzd10kkm98vzfjcwg4y4"; depends=[]; };
+LncMod = derive { name="LncMod"; version="1.1"; sha256="08001y7s93i3k3478jqfh9zsgpq6ym1xmdmldi7s76zbfr1nknvy"; depends=[pheatmap survival]; };
 LocFDRPois = derive { name="LocFDRPois"; version="1.0.0"; sha256="0zzdp9wgwr6wn3grimghpj4vq34x37c8bqg8acfzlzih8frqal3r"; depends=[dplyr ggplot2]; };
 Lock5Data = derive { name="Lock5Data"; version="2.6"; sha256="0ckaac00ck5vyv0gv25l1zhgkm3char6ks1p4fl3vdl5gdyrc1pp"; depends=[]; };
 LogConcDEAD = derive { name="LogConcDEAD"; version="1.5-9"; sha256="135vkp70q6gn75ds43aq08y13vrsgsgykssmnhrh6545i86vmhhi"; depends=[MASS mvtnorm]; };
 LogicForest = derive { name="LogicForest"; version="2.1.0"; sha256="0zdyyi6wka0568414f1kw91rx04y76n1k11wxd4r8svb5wybjhp5"; depends=[CircStats gtools LogicReg plotrix]; };
-LogicReg = derive { name="LogicReg"; version="1.5.6"; sha256="1izsdv8vcfv7lqq6i5kzawvrdbqizp2pvf5kv198cmav0g0p4ijd"; depends=[survival]; };
-LogisticDx = derive { name="LogisticDx"; version="0.1"; sha256="1w530panmbwf4qplzzj02q9g2lfzrkawxy66ibwdd14z9bwjdclj"; depends=[car data_table gRbase multcomp pROC rms speedglm statmod]; };
+LogicReg = derive { name="LogicReg"; version="1.5.8"; sha256="0hjh4wk7dh1ryc75kipdgmkvhz15h46gr9qc5pk49286h11fbnsi"; depends=[survival]; };
+LogisticDx = derive { name="LogisticDx"; version="0.2"; sha256="0ciygvynnyajpn1glxy6mwj9vbl7iv8a8dfsi6wxjxp2rac68rig"; depends=[aod data_table pROC RColorBrewer rms speedglm statmod]; };
 LogitNet = derive { name="LogitNet"; version="0.1-1"; sha256="08xi5rpbqkc1b3qj24blv3l0r68wcqbsbjcqxiypm75f3c2irc4i"; depends=[]; };
 LogrankA = derive { name="LogrankA"; version="1.0"; sha256="005zkpzi8h03qvqlpkygrf9xv4q77klafkfxw47x04jvkhklwigb"; depends=[]; };
-LoopAnalyst = derive { name="LoopAnalyst"; version="1.2-3"; sha256="0xbiy1xa2c6acfrzh6p9pa6wrds8ipskxq0f86ia9g5zkp1rjk2j"; depends=[nlme]; };
+LoopAnalyst = derive { name="LoopAnalyst"; version="1.2-4"; sha256="02p46agsdbvw6dpgzahq9hfmy184jrkwa1hhnrcbrsmm54n3m2bx"; depends=[nlme]; };
 LowRankQP = derive { name="LowRankQP"; version="1.0.2"; sha256="0is7v4cy4w1g3wn4wa32iqv4awd1nwvfcb71b3yk5wj59lpm8gs3"; depends=[]; };
 Luminescence = derive { name="Luminescence"; version="0.4.4"; sha256="0b7a55aqishi6jwxlpkbakfr38brjd4c61n4mcbsg6nwg7qiz1v7"; depends=[bbmle data_table matrixStats minpack_lm raster Rcpp rgl shape XML zoo]; };
 M3 = derive { name="M3"; version="0.3"; sha256="1l40alk166lshckqp72k5zmsgm7s5mgyzxlp11l64mgncjwkw2r3"; depends=[mapdata maps ncdf4 rgdal]; };
-MADAM = derive { name="MADAM"; version="1.2.2"; sha256="09w5liqa3mpkbyvkwlabcgyg2b4316qpzq7pbpl0wxl74bsh76vq"; depends=[]; };
 MAINT_Data = derive { name="MAINT.Data"; version="0.4"; sha256="0338q1yh7b0mbnmh3rbli8vq0fzxyx4qxx0143p615ahsf68jw1c"; depends=[]; };
 MALDIquant = derive { name="MALDIquant"; version="1.12"; sha256="1grlqplcz41xdr3wlmn246xs3vk8y6qqq0n92srv2crlr8fw2yg2"; depends=[]; };
 MALDIquantForeign = derive { name="MALDIquantForeign"; version="0.9"; sha256="0bs6frqz462hrad16kjvbmq2s66bv3kpriav4hdz5a4klra389gl"; depends=[base64enc digest downloader MALDIquant readBrukerFlexData readMzXmlData XML]; };
 MAMA = derive { name="MAMA"; version="2.2.1"; sha256="1dcyfir6jv28jzvphiqrjns3jh2zg2201iwcvjzbmddl2isk9h0i"; depends=[genefilter GeneMeta gtools MergeMaid metaArray metaMA multtest xtable]; };
-MAMS = derive { name="MAMS"; version="0.4"; sha256="0v4sa8cyjdkg7lrznl7jv8xqm6qf67jf946fd6ymbd0wpd7gxrgp"; depends=[mvtnorm]; };
+MAMS = derive { name="MAMS"; version="0.5"; sha256="0wi21d6cskf6hmlf6sygixhwr70n6qx232dc1wm36ljpk18v6rmh"; depends=[mvtnorm]; };
 MAMSE = derive { name="MAMSE"; version="0.1-3"; sha256="06q6raqbyi9zwg3wzaygqmfs3di55fh4bln3vscdw95kma4hz9km"; depends=[]; };
 MAPA = derive { name="MAPA"; version="1.9"; sha256="1i143x2l6fq4vl8l8cagai580yqv446pdw4gw5qzxp85hgvm8bvg"; depends=[forecast]; };
 MAPLES = derive { name="MAPLES"; version="1.0"; sha256="0hzsh7z1k7qazpxjqbm9842zgdpl51irg7yfd119a7b2sd3a8li9"; depends=[mgcv]; };
 MAR1 = derive { name="MAR1"; version="1.0"; sha256="1r6j890icl5h3m2876sakmwr3c65513xnsj68sy0y0q7xj3a039l"; depends=[bestglm leaps]; };
 MARSS = derive { name="MARSS"; version="3.9"; sha256="0vn8axzz0nqdcl3w00waghz68z8pvfm764w11kxxigvjpw2plj31"; depends=[KFAS mvtnorm nlme]; };
-MASS = derive { name="MASS"; version="7.3-40"; sha256="05mmbhswp5dqjd2c6v9w1z1710sm46d53j3prq8maj6bc9qr634y"; depends=[]; };
+MASS = derive { name="MASS"; version="7.3-42"; sha256="10gv2i0i0ap3yrca53fwx9afl7zri1xfbwncnxi1p58zrwjs54lx"; depends=[]; };
 MASSTIMATE = derive { name="MASSTIMATE"; version="1.2"; sha256="1j9l8b5d518ag9ivzr1z4dd2m23y2ia1wdshx1krmshn8xsd6lwp"; depends=[]; };
 MAT = derive { name="MAT"; version="2.2"; sha256="093axw2zp4i3f6s9621zwibcxrracp77xrc0q5q0m4yv3m35x908"; depends=[Rcpp RcppArmadillo]; };
 MATA = derive { name="MATA"; version="0.3"; sha256="006mnc4wqh9vdigfzrzx4csgczi0idvlwb6r23w5mmsfbn0ysdm5"; depends=[]; };
@@ -1092,20 +1096,18 @@ MEMSS = derive { name="MEMSS"; version="0.9-2"; sha256="0wyw8yjs4miwgwdfcnfbzvkx
 MESS = derive { name="MESS"; version="0.3-2"; sha256="0x518awi2mxjh3vq69n1jv4d4dxjxhqfx1py48dijgd6w674d3q8"; depends=[geepack glmnet kinship2 Matrix mvtnorm]; };
 MExPosition = derive { name="MExPosition"; version="2.0.3"; sha256="1l27wp0psfvlkk79fhb8ypf8awardjljg1f37yj42friy9pdfksz"; depends=[ExPosition prettyGraphs]; };
 MF = derive { name="MF"; version="4.3.2"; sha256="1arnhyqf1cjvngygcpqk2g4d52949rhkjmclbaskyxcrvp62qln0"; depends=[]; };
-MFDA = derive { name="MFDA"; version="1.1-4"; sha256="0zf21al8ivmsxlf1i7kc01w0jx3s6650a034cdynz7axnxx28ncx"; depends=[gss mvtnorm]; };
 MFHD = derive { name="MFHD"; version="0.0.1"; sha256="0gb8y297y1x03wy46530psmlawyv4z5dydilk36qcmadlk1wx02k"; depends=[deldir depth depthTools fda_usc matrixStats]; };
-MGL = derive { name="MGL"; version="1.1"; sha256="17xkrq0wzq1gfa6k1lgf34l4ibwjk6j9rnig3l403zpykmf2ffs6"; depends=[]; };
 MGRASTer = derive { name="MGRASTer"; version="0.9"; sha256="0jmf2900r56v60981sabflkhid3yrqd9xd7crb56vgfl1qkva9zp"; depends=[]; };
 MGSDA = derive { name="MGSDA"; version="1.1"; sha256="09z066sfjvx7awxc86gfw066wlz6svj7nxkhlas63a7zfbkiz7hl"; depends=[glmnet MASS]; };
 MHadaptive = derive { name="MHadaptive"; version="1.1-8"; sha256="1w3bm82v8ahxrf0vqn0pznv7dqn212drinkz8y5kr1flx423l9ws"; depends=[MASS]; };
 MIICD = derive { name="MIICD"; version="2.1"; sha256="1lh3pbpxn7lbs68741ydw264qn9rap7kmcw49vnjvvzdp7hf24in"; depends=[MASS mstate survival]; };
-MIIVsem = derive { name="MIIVsem"; version="0.2"; sha256="15sv6fskhdm70vyz6y6wbxw9ghwinvqad7414qkn7lgymn5fm767"; depends=[lavaan Matrix]; };
+MIIVsem = derive { name="MIIVsem"; version="0.3"; sha256="13f5h8mw8bwdw2v47nng3w3qn697bn2jgl1p51qg50g4qn3wrbwk"; depends=[lavaan Matrix]; };
 MILC = derive { name="MILC"; version="1.0"; sha256="14xsiw5al6kixwvf3ph0dlm8s13gsbqvzb92da6ng3x4iiyb1g0w"; depends=[]; };
 MIPHENO = derive { name="MIPHENO"; version="1.2"; sha256="0hcaq66biv4izszdhqkgxgz91mgkjk1yrwq27fx07a2zmzj44sfv"; depends=[doBy gdata]; };
 MImix = derive { name="MImix"; version="1.0"; sha256="033gxr0z2xba0pgckiigblb1xa94wrfmpgv3j122cdynjch44j4r"; depends=[]; };
 MInt = derive { name="MInt"; version="1.0.1"; sha256="1nk02baainxk7z083yyajxrnadg2y1dnhr51fianibvph1pjjkl6"; depends=[glasso MASS testthat trust]; };
 MKLE = derive { name="MKLE"; version="0.05"; sha256="00hcihjn3xfkzy0lvb70hl2acjkwk6s3y7l4gprix24shnblvxzi"; depends=[]; };
-MKmisc = derive { name="MKmisc"; version="0.98"; sha256="0ng6n1x2x1bg60byhpk212pihh7hirbjr4s89lzrwj854z93bv5l"; depends=[RColorBrewer robustbase]; };
+MKmisc = derive { name="MKmisc"; version="0.99"; sha256="071vq4r3206v5bnb3cfar9g3hjgk8crqgs1ky7pzqcxyc439bdc0"; depends=[RColorBrewer robustbase]; };
 MLCIRTwithin = derive { name="MLCIRTwithin"; version="1.0"; sha256="01fp2pyiwpzsby3iwn9w9ry4nksy2llwzawrmba80s5m7mrcljbn"; depends=[limSolve MASS MultiLCIRT]; };
 MLCM = derive { name="MLCM"; version="0.4.1"; sha256="1g6lmw75qdiq0fshxr3sqwm1a3y4928chxkggnfwwxp8hqw4r6px"; depends=[]; };
 MLDS = derive { name="MLDS"; version="0.4.3"; sha256="1vql92y2dy1ba5l5xdysqzkzvkrr4bhclmjabn49c8qb2xc2rl40"; depends=[MASS]; };
@@ -1113,9 +1115,8 @@ MLEcens = derive { name="MLEcens"; version="0.1-4"; sha256="0zlmrcjraypscgs2v0w4
 MLRMPA = derive { name="MLRMPA"; version="1.0"; sha256="0gfbi70b15ivv76l3i0zlm14cq398nlny40aci3vqxxd0m2lyyx5"; depends=[ClustOfVar]; };
 MLmetrics = derive { name="MLmetrics"; version="1.0.0"; sha256="05j8hwcvfrsslib5k4w3xwkllb3rxdxazsld26zpjf3dc643ag9a"; depends=[]; };
 MM = derive { name="MM"; version="1.6-2"; sha256="1z7i8ggd54qjmlxw9ks686hqgm272lwwhgw2s00d9946rxhb3ffi"; depends=[emulator magic Oarray partitions]; };
-MM2S = derive { name="MM2S"; version="1.0.0"; sha256="0g5x375c58xsihj43dh19hx6vh87f8ppjibik5sb7lxvl1xms49c"; depends=[GSVA kknn lattice pheatmap]; };
+MM2S = derive { name="MM2S"; version="1.0.2"; sha256="03yhxr5sh3idsafa1s8y67717yyk4yspc19r0b2cjr22ca2yhv4c"; depends=[GSVA kknn lattice pheatmap]; };
 MM2Sdata = derive { name="MM2Sdata"; version="1.0.1"; sha256="1prx0gm9shizj45382qhja417y18jp6spk2hmgrzb7sbniyqs5pd"; depends=[Biobase]; };
-MMIX = derive { name="MMIX"; version="1.2"; sha256="02c74qp48ixqh5cjp2006zgg4xz4bgxxq3csyhjl219if19kmj5m"; depends=[]; };
 MMMS = derive { name="MMMS"; version="0.1"; sha256="1a71vs3k16j14zgqfd4v92dq9swrb44n9zww8na6di82nla8afck"; depends=[glmnet survival]; };
 MMS = derive { name="MMS"; version="3.00"; sha256="06909912v2hr52s8k0a0830lbmdh05dcd7k47vydhbwq3rzf3ahg"; depends=[glmnet Matrix mht]; };
 MNM = derive { name="MNM"; version="1.0-1"; sha256="0fy43jfd7wak2rfdv5hdq7zc0zsxnbz9p69g6sla0zliibafg0q6"; depends=[ellipse ICS ICSNP SpatialNP]; };
@@ -1152,26 +1153,25 @@ MUCflights = derive { name="MUCflights"; version="0.0-3"; sha256="03ksvv5nyzlqim
 MVA = derive { name="MVA"; version="1.0-5"; sha256="18x075hjqhrjwxivvrixgs6yc67il3n5p1m7v2wymcf8h2mkki91"; depends=[HSAUR2]; };
 MVB = derive { name="MVB"; version="1.1"; sha256="0an8b594rknlcz6zxjva6br8f34sgwdi2jil3xh1xzb5fa55dw0f"; depends=[Rcpp RcppArmadillo]; };
 MVN = derive { name="MVN"; version="4.0"; sha256="1ql50ch6qig7r0xnfv5f74k3vc32k04jgmvjbndgyzbacn2ibrm7"; depends=[MASS moments mvoutlier nortest plyr psych robustbase]; };
-MVR = derive { name="MVR"; version="1.20.0"; sha256="1wwzws9116ck14g6xd1svmwc9wkr8piwb24bddnzri388p8qkgb4"; depends=[statmod]; };
-MVar_pt = derive { name="MVar.pt"; version="1.1"; sha256="0jcxsf0c9klnj19j8shiadxrbh3wa7da2vywk352ylirl5vdv2yl"; depends=[]; };
-MXM = derive { name="MXM"; version="0.3.1"; sha256="06sp6hy0dparya6fcfbiyhh0h10r8ai8fmh4rq2fz0dq6prk95ic"; depends=[]; };
+MVR = derive { name="MVR"; version="1.30.1"; sha256="0rs1j2kfa43c0l0vsayrql8fchpyfrrp2hh0cq77pvhpviw4v4ga"; depends=[statmod]; };
+MVar_pt = derive { name="MVar.pt"; version="1.2"; sha256="1p3xjlykg40zz5354drz962wm9bcp9kmz8fd56pza7dlybblv9i8"; depends=[]; };
+MXM = derive { name="MXM"; version="0.4"; sha256="1hb30n31a54z1v11vmkccdq62h73divmjfv6s7d2a5371xldj73f"; depends=[Hmisc MASS ROCR survival TunePareto VGAM]; };
 MaXact = derive { name="MaXact"; version="0.2.1"; sha256="1n7af7kg54jbr09qk2a8gb9cjh25cnxzj2snscpn8sr8cmcrij0i"; depends=[mnormt]; };
-Maeswrap = derive { name="Maeswrap"; version="1.4.11"; sha256="15i36xj2bdzhly78614077s8k2z75a1gmzl2crsfgvhyyjdax8r7"; depends=[geometry lattice rgl]; };
+Maeswrap = derive { name="Maeswrap"; version="1.7"; sha256="0cnnr5zq7ax1j7dx7ira7iccqppc6qpdjghjarvdb2zj0lf69yyb"; depends=[geometry lattice rgl stringr]; };
 ManyTests = derive { name="ManyTests"; version="1.1"; sha256="11xk3j2q7w6b6ljmp7b8gni0khpmpvcvzwxypy0w8ihi2gaczsxj"; depends=[]; };
 Map2NCBI = derive { name="Map2NCBI"; version="1.0"; sha256="02cgmayrhkyji0cwr6n0f439njq29mzna7sgzkq6ml45njm9m5nh"; depends=[]; };
 MapGAM = derive { name="MapGAM"; version="0.7-5"; sha256="0bpswdi7iic7hsqrwcxwv27n4095m292nv5db6d4mj9gvp13h7i7"; depends=[gam maptools sp]; };
-MareyMap = derive { name="MareyMap"; version="1.2"; sha256="1l7s1ffl9bg1zx5nyb1r3dba188mxiaprdda3gqm2cr1f33jmr51"; depends=[tkrplot]; };
+MareyMap = derive { name="MareyMap"; version="1.3.0"; sha256="1blbz1rr0p4fljk7fz2s4x22xj6fxpvhrx0rl0bjg4mgwi2p61aq"; depends=[tkrplot]; };
 MarkowitzR = derive { name="MarkowitzR"; version="0.1502"; sha256="0srrmzr4msn04w5f6s6qs51db8jccpfj10sighsv1l7d056n2xjn"; depends=[gtools matrixcalc sandwich]; };
 MasterBayes = derive { name="MasterBayes"; version="2.52"; sha256="12ka2l4x6psij7wzbb98lwx5shgwzn5v44qfpiw1i6g236yp0mhm"; depends=[coda genetics gtools kinship2]; };
 MatchIt = derive { name="MatchIt"; version="2.4-21"; sha256="02kii2143i8zywxlf049l841b1y4hqjwkr1cnyv6b8b7y7lz2m5v"; depends=[MASS]; };
 Matching = derive { name="Matching"; version="4.8-3.4"; sha256="04m647342j4yi74ds7ddwnyrf58qdy7k3mc067k3p779qavq2ka1"; depends=[MASS]; };
 MatchingFrontier = derive { name="MatchingFrontier"; version="1.0.0"; sha256="1djlkx7ph8p60n2m191xq9i01c2by4vpmjj25mbxy5izxm5123aa"; depends=[igraph MASS segmented]; };
-Matrix = derive { name="Matrix"; version="1.2-1"; sha256="0farq1x1qhgzdwqqd4bn3g6hbv91hk5sm2v00vphf0zgj2fg2qm6"; depends=[lattice]; };
+Matrix = derive { name="Matrix"; version="1.2-2"; sha256="0f0a8rl8lx1f0f50fxfq4q37d52hd70a611vvgq3rsb39911j935"; depends=[lattice]; };
 MatrixEQTL = derive { name="MatrixEQTL"; version="2.1.1"; sha256="1bvfhzhvm1psgq51kpjcpp7bidaxcrxdigmv6abfi3jk5kyzn5ik"; depends=[]; };
 MatrixModels = derive { name="MatrixModels"; version="0.4-0"; sha256="1jcjsyha0xmz264g1haj7x8zpzjmp1m0jl39h5bf8r45hhlaxcsa"; depends=[Matrix]; };
 MaxPro = derive { name="MaxPro"; version="3.1-2"; sha256="1y2g8a8yvzb24dj0z82nzfr6ylplb9sbi2dmj7f3pb4s3yr5zm8y"; depends=[nloptr]; };
 MazamaSpatialUtils = derive { name="MazamaSpatialUtils"; version="0.2.4"; sha256="04ljjzcqfgy136wviz92gdavqzjhbai1v69nj4kg6vc6nwvkhnbx"; depends=[dplyr rgdal rgeos rvest sp stringr]; };
-McParre = derive { name="McParre"; version="1.0.1"; sha256="16bfca867drbknzc6bylg8paa8p72l23wgjpyvy4pd9z6lpgmhdy"; depends=[MASS]; };
 McSpatial = derive { name="McSpatial"; version="2.0"; sha256="18nmdzhszqcb5z9g8r9whxgsa0w3g7fk7852sgbahzyw750k95n4"; depends=[lattice locfit maptools quantreg RANN SparseM]; };
 Mcomp = derive { name="Mcomp"; version="2.05"; sha256="0wggj0h0qxjwym1vz1gk9iwnwia4lpjlk6n46l6hinsdax3g221y"; depends=[forecast tseries]; };
 MedOr = derive { name="MedOr"; version="0.1"; sha256="1rwc14s16lnzgb78ac2017hv9pss7zw7nw3y7vrvq1qx4fgiw6f8"; depends=[]; };
@@ -1183,7 +1183,7 @@ MetNorm = derive { name="MetNorm"; version="0.1"; sha256="0vfi3k0yp2dz47gwj1n1av
 MetSizeR = derive { name="MetSizeR"; version="1.1"; sha256="11hdmpvnszr6pn9ihb3zjy9miksz1fs4piry153z4dic8pjydkax"; depends=[cairoDevice gWidgets gWidgetsRGtk2 MetabolAnalyze mvtnorm]; };
 MetStaT = derive { name="MetStaT"; version="1.0"; sha256="0400gx6i8xlkm51da98ap91c3hgrkgfgxswn0plaxfry3625khkp"; depends=[abind MASS pls]; };
 MetaDE = derive { name="MetaDE"; version="1.0.5"; sha256="1ijg64bri5jn2d3d13q1gvvfyqmbh6gn0lk6dkihixf0jwvjdyqi"; depends=[Biobase combinat impute survival]; };
-MetaLandSim = derive { name="MetaLandSim"; version="0.2"; sha256="0lb058kcqpylw27hlmkxmpndsiw71g865fgapw6d599brgi91a8i"; depends=[Biobase e1071 fgui googleVis maptools raster rgeos sp spatstat spgrass6]; };
+MetaLandSim = derive { name="MetaLandSim"; version="0.3"; sha256="04pyl9p2mqf4sgsfbzc2l0hccnq6z9q1929lq24ip0g8pn2svj96"; depends=[Biobase e1071 fgui googleVis maptools raster rgeos sp spatstat spgrass6]; };
 MetaPCA = derive { name="MetaPCA"; version="0.1.4"; sha256="14g4v3hyxnds4l2q36mpz282yqg8ahgdw3b0qmj0xg17krrf5l2s"; depends=[foreach]; };
 MetaQC = derive { name="MetaQC"; version="0.1.13"; sha256="11595ggjr46z6xiwmhiyx1sydaq68l18y7mgdwxsg81g03ck9x1r"; depends=[foreach iterators proto]; };
 MetaSKAT = derive { name="MetaSKAT"; version="0.40"; sha256="1jxs32hvsw6wzci9f1rc7sw1dfyazdm2d57wcmhkggfg3hkdn1vv"; depends=[SKAT]; };
@@ -1194,7 +1194,7 @@ MethComp = derive { name="MethComp"; version="1.22.2"; sha256="0f9l36d00x054yqgb
 Methplot = derive { name="Methplot"; version="1.0"; sha256="0aaqss9zfn55qi45jffxkksnkw510npjnkygafx49vl77bkagqh5"; depends=[ggplot2 reshape]; };
 Metrics = derive { name="Metrics"; version="0.1.1"; sha256="1yqhlsmhh9sl7qngl85b7qb980s54h13wwznpakyvvwlar64yqrw"; depends=[]; };
 MfUSampler = derive { name="MfUSampler"; version="0.9.1"; sha256="0fw1jw2ljsxmvnaayn7zdrrsnbbkkb5n9nm396321p36bqkf1pk3"; depends=[ars]; };
-MiRSEA = derive { name="MiRSEA"; version="1.0"; sha256="1azabfwd83x6g3fpwdqss5b0rxj8zfmj9972bd0brk8z39wggsrr"; depends=[]; };
+MiRSEA = derive { name="MiRSEA"; version="1.1"; sha256="0jpl6ws5yx1qjzdnip9a37nmvx81az4cbsjm57x613qjpwmg6by3"; depends=[]; };
 MiST = derive { name="MiST"; version="1.0"; sha256="0gqln792gixqfh201xciaygmxbafa0wyv5gpbg9w5zkbbv44wrfk"; depends=[CompQuadForm]; };
 MicSim = derive { name="MicSim"; version="1.0.8"; sha256="0i9vyim7wfnaf1zcs1vz6yc7xkr1hzhqcccbcvg15vkzhr23f8lg"; depends=[chron rlecuyer snowfall]; };
 MicroDatosEs = derive { name="MicroDatosEs"; version="0.6.3.1"; sha256="17ka9bdic8vdr0aabmgm216zm9a8jppxll042b5ric4vzplah17d"; depends=[Hmisc memisc]; };
@@ -1206,7 +1206,7 @@ MissMech = derive { name="MissMech"; version="1.0.2"; sha256="1b7i1balfl1cqr3l4l
 MissingDataGUI = derive { name="MissingDataGUI"; version="0.2-2"; sha256="07a3y8l0r7a0f7zmp5pg2aqkf7hyk8cf562x3m8b38w96vir4vr0"; depends=[cairoDevice GGally ggplot2 gWidgetsRGtk2 reshape]; };
 MitISEM = derive { name="MitISEM"; version="1.0"; sha256="03305ds3rgr29z4idaxzsm83igiygna2sqd5vpixklngsrp8w341"; depends=[mvtnorm]; };
 MixAll = derive { name="MixAll"; version="1.0.2"; sha256="10jwiri659i2h0gkaxc41gjvff4v465syxr0nppn1qqz5910jql0"; depends=[Rcpp rtkpp]; };
-MixGHD = derive { name="MixGHD"; version="1.6"; sha256="0lmv1yspjn9m5kw0zd2sabgy33zd77p0nqfvs9cvy3ldvz35095i"; depends=[Bessel ghyp MASS mclust mixture mvtnorm numDeriv]; };
+MixGHD = derive { name="MixGHD"; version="1.7"; sha256="0cbrm5n6gsa61fpk02l3fky482vc2z9wd48hpv87pck6pd7ihqk9"; depends=[Bessel e1071 ghyp MASS mixture mvtnorm numDeriv]; };
 MixMAP = derive { name="MixMAP"; version="1.3.1"; sha256="0m6m9wi0ain7z96s6z6kmwjisfqm3al6m459y5zr2l1cdbdpxfpv"; depends=[lme4]; };
 MixSim = derive { name="MixSim"; version="1.1-1"; sha256="1a1hrsnm6zv9vag7hq8plrkjr4ak26w7k58wdkgxsjb9r6qzm1yf"; depends=[MASS]; };
 MixedTS = derive { name="MixedTS"; version="1.0.1"; sha256="0ljal2jxscwrv439blavf5gjxbi3k3jfqqmwblzfvc05dqgvdk0b"; depends=[MASS]; };
@@ -1218,23 +1218,22 @@ ModelMap = derive { name="ModelMap"; version="3.0.15"; sha256="1d7qn1p4fv94bdlr6
 Momocs = derive { name="Momocs"; version="0.2-6"; sha256="187w6xyswlg5nac6lbprcwvj63gka832n33vlj2ix810vqyxd0fk"; depends=[ade4 ape jpeg shapes sp spdep]; };
 MonetDB_R = derive { name="MonetDB.R"; version="0.9.7"; sha256="0b5agr3dl0ps7fnqw2fsgzb2ysqzvg2ymhxz3xyn08djgz6w7vkm"; depends=[DBI digest]; };
 MonoPoly = derive { name="MonoPoly"; version="0.2-8"; sha256="0lpqqpahpss4q9iddh2p4h6klsrjhg3v6h1wfb70vy0miyhqb93h"; depends=[quadprog]; };
-Morpho = derive { name="Morpho"; version="2.2"; sha256="03j121ghswr1kwq40krk3b4ycn44l9ga3bp64igknvpnqikp5qcb"; depends=[colorRamps doParallel foreach Matrix Rcpp RcppArmadillo rgl Rvcg yaImpute]; };
+Morpho = derive { name="Morpho"; version="2.3.0"; sha256="0k3qclk1sxlrq7y618wwfwq7v4g1hnikggm4vwacx1v7017kp05y"; depends=[colorRamps doParallel foreach Matrix Rcpp RcppArmadillo rgl Rvcg yaImpute]; };
 MorseGen = derive { name="MorseGen"; version="1.2"; sha256="1kq35n00ky70zmxb20g4mwx0hn8c5g1hw3csmd5n6892mbrri8s9"; depends=[]; };
 MortalitySmooth = derive { name="MortalitySmooth"; version="2.3.4"; sha256="1clx8gb8jqvxcmfgv0b8jyvh39yrmcmwr472j9g3ymm95m4hr8fq"; depends=[lattice svcm]; };
 MplusAutomation = derive { name="MplusAutomation"; version="0.6-3"; sha256="1zb4drqaswzwssky1bp69p3p8inqfdvxg2ji9bjrzf3vf0b5fl4p"; depends=[boot coda gsubfn lattice plyr texreg xtable]; };
 Mposterior = derive { name="Mposterior"; version="0.1.2"; sha256="16a7wvg41ld2bhbss480js5h12r41nl7jmc3y4jsbv1lr5py4ymy"; depends=[Rcpp RcppArmadillo]; };
 MuFiCokriging = derive { name="MuFiCokriging"; version="1.2"; sha256="09p8wdmlsf21ibqyjigwdipcin3ij0naxcd035hqgfj76v20wiyv"; depends=[DiceKriging]; };
-MuMIn = derive { name="MuMIn"; version="1.14.0"; sha256="0zwwwp7979kss5871vp6975maqm8gsc0hn75fxq90l0xcyipxvcy"; depends=[Matrix]; };
+MuMIn = derive { name="MuMIn"; version="1.15.1"; sha256="04fl6m60z7h1a4mik58f8r8s3crx53n4jhg0lg9alnzipaij1qi5"; depends=[Matrix]; };
 MultEq = derive { name="MultEq"; version="2.3"; sha256="0fshv7i97q8j7vzkxrv6f20kpqr1kp9v6pbw50g86h37l0jghj7r"; depends=[]; };
 MultNonParam = derive { name="MultNonParam"; version="1.0"; sha256="0xff81wjmyw2d38r0v3n7vv0dasg9rlrc0zrdwsmfd83zpvxqj5m"; depends=[]; };
 MultiCNVDetect = derive { name="MultiCNVDetect"; version="0.1-1"; sha256="0mfisblw3skm4y8phfg4wa0rdchl01wccarsq79hv63y78pfhh13"; depends=[]; };
 MultiLCIRT = derive { name="MultiLCIRT"; version="2.9"; sha256="0anb041nd56rrryhv5w1pb0axxsfkqas177r6yf5h5gbc4vn3758"; depends=[limSolve MASS]; };
 MultiMeta = derive { name="MultiMeta"; version="0.1"; sha256="0gj0wk39fqd21xjcah20jk16jlfrcjarspbjk5xv74c9k4p5gmak"; depends=[expm ggplot2 gtable mvtnorm reshape2]; };
 MultiOrd = derive { name="MultiOrd"; version="2.1"; sha256="12y5cg06qyaz72gk3bi5pqkd55n72rz056y9va49znlsqph09x2x"; depends=[corpcor Matrix mvtnorm psych]; };
-MultiPhen = derive { name="MultiPhen"; version="2.0.0"; sha256="05w7khzyxswlsz4sxhaakbz828zrdya1y8qcsdfc6w7wgl8qpmj9"; depends=[abind epitools gplots HardyWeinberg MASS meta RColorBrewer]; };
+MultiPhen = derive { name="MultiPhen"; version="2.0.1"; sha256="1gvsivx8qz5yl4rc4db8sg2llg8s4bgkg22aanvr01h649a08m16"; depends=[abind epitools gplots HardyWeinberg MASS meta RColorBrewer]; };
 MultiRR = derive { name="MultiRR"; version="1.0"; sha256="0m2v13cygabjbsz0fwxwh03csd3yfdpzk4yfvx8lrim9m90026hz"; depends=[lme4 MASS]; };
 MultiSV = derive { name="MultiSV"; version="0.0-67"; sha256="0924lvkx12aqjxxz8bwqdi4h9xc2acf8aynllx0m45ip5r4gh1g2"; depends=[nlme reshape]; };
-Multiclasstesting = derive { name="Multiclasstesting"; version="1.3.9"; sha256="09y3gnarqv15wgmk545qrwpjwb2ilv2b2kc74cxzcb2p1lflfjzm"; depends=[]; };
 MultinomialCI = derive { name="MultinomialCI"; version="1.0"; sha256="0ryi14d102kvxawls04hcw50n79jkcn29ill77lkfvj6nlzj8i5q"; depends=[]; };
 Myrrix = derive { name="Myrrix"; version="1.1"; sha256="15w1dic6p983g2gajbm4pws743z68y0k2hxrdwx6ppnzn9rk07rs"; depends=[Myrrixjars rJava]; };
 Myrrixjars = derive { name="Myrrixjars"; version="1.0-1"; sha256="0dy82l0903pl4c31hbllscfmxrv3bd5my5b2kv5d3x5zq0x99df0"; depends=[rJava]; };
@@ -1244,17 +1243,18 @@ NAPPA = derive { name="NAPPA"; version="2.0.1"; sha256="0nn4wgl8bs7sy7v56xfif7i9
 NB = derive { name="NB"; version="0.9"; sha256="1gh42z7lp6g09fsfmikxqzyvqp2874cx3a6vr96w43jfwmgi2diq"; depends=[]; };
 NBDdirichlet = derive { name="NBDdirichlet"; version="1.01"; sha256="07j9pcha6clrji8p4iw466hscgs6w43q0f7278xykqcdnk39gkyv"; depends=[]; };
 NBPSeq = derive { name="NBPSeq"; version="0.3.0"; sha256="0l4ylxhs2k9ww21jjqs67fygk92avdchhx2y1ixzl7yr2yh1y9by"; depends=[qvalue]; };
+NCA = derive { name="NCA"; version="1.0"; sha256="0qi047xvazgzzzjdsdgd6blnj30rsqimkld8was0l5568s1qgpn1"; depends=[Benchmarking gplots quantreg sfa yaml]; };
 NCmisc = derive { name="NCmisc"; version="1.1.4"; sha256="0hbrad72lzp0vi0j9lvpmvdih7vijqghqng1f0hjd8fg8hjvcflg"; depends=[dplyr proftools]; };
 NEff = derive { name="NEff"; version="1.1"; sha256="16ys1fi28kbzg3am9vz1c5pc9x0ac47pl6za04h63lspk99yplzk"; depends=[bit msm]; };
-NHANES = derive { name="NHANES"; version="2.0"; sha256="0bdsccr1g2vnisllnmj2z4sma5hdp2iqm1fpr0kmbv1dnkpmxd41"; depends=[]; };
+NHANES = derive { name="NHANES"; version="2.1.0"; sha256="0aphv3rakfcfrv2km1xyxpj1bxiazy6gwrvs7lyhxmq468fk4c9a"; depends=[]; };
 NHEMOtree = derive { name="NHEMOtree"; version="1.0"; sha256="0ycprj2rz2fy6a7ps0bsr27iphmbfxi9pbvl8rcr6p8yagfb84mb"; depends=[emoa partykit rpart sets]; };
 NHMM = derive { name="NHMM"; version="3.5"; sha256="03il5y6vz5zyadydhk3qg6sd6fmsw7md9if1igyy9643mxxm1g0f"; depends=[BayesLogit MASS MCMCpack msm Rcpp]; };
 NHMSAR = derive { name="NHMSAR"; version="1.1"; sha256="1qbgxb684qwcb29x95a48r6bndqwdi1drwzimkhkb2ldm98yga3z"; depends=[caTools glasso lars SIS ucminf]; };
 NHPoisson = derive { name="NHPoisson"; version="3.1"; sha256="1gr682kxgw227yqw9w0iw9lrijsz5iszhnfk0mdhi6m1w9s28kcn"; depends=[car]; };
 NISTnls = derive { name="NISTnls"; version="0.9-13"; sha256="03a1c8a5dr5l5x4wbclnsh3vmx3dy7migfdzdx7d7p3s7hj3ibif"; depends=[]; };
 NISTunits = derive { name="NISTunits"; version="1.0.0"; sha256="156rk3wams52lw3inf55s9v7mi5x29mmb41p8kvryimnzgi904ca"; depends=[]; };
-NLP = derive { name="NLP"; version="0.1-7"; sha256="1r7m6mq7i6xcf2qxzwvwx129fq89gx6f8kxqn76iw5a5nfarq87w"; depends=[]; };
-NLPutils = derive { name="NLPutils"; version="0.0-2"; sha256="1ny1q4b4pd1pl6d3lgv9zfkrw5wjd6pvhwlahj82fr1z3nq46bwb"; depends=[NLP qdap SnowballC]; };
+NLP = derive { name="NLP"; version="0.1-8"; sha256="0vzb4rlr30ncqk2whl2apryab8nladm14p9awwg7mp5r4safs2ys"; depends=[]; };
+NLPutils = derive { name="NLPutils"; version="0.0-3"; sha256="1j6y9z8d4ms6lxrz9wq9ydvsnkf4ca5qps8yxmglx81i152aq216"; depends=[NLP qdap SnowballC]; };
 NLRoot = derive { name="NLRoot"; version="1.0"; sha256="1x8mcdgqqrhyykr12bv4hl4wbh1zw2qgpnd2yrm68kb92iy95rh4"; depends=[]; };
 NMF = derive { name="NMF"; version="0.20.6"; sha256="0mmh9bz0zjwd8h9jplz4rq3g94npaqj8s4px51vcv47csssd9k6z"; depends=[cluster colorspace digest doParallel foreach ggplot2 gridBase pkgmaker RColorBrewer registry reshape2 rngtools stringr]; };
 NMFN = derive { name="NMFN"; version="2.0"; sha256="0n5fxqwyvy4c1lr0glilcz1nmwqdc9krkqgqh3nlyv23djby9np5"; depends=[]; };
@@ -1289,7 +1289,7 @@ NetSim = derive { name="NetSim"; version="0.9"; sha256="07h4qwz64k8zj8c2mx23cbnh
 NeuralNetTools = derive { name="NeuralNetTools"; version="1.3.1"; sha256="0nk2rs1rfv1lp99kfmqfcwgli92pljzrf4dgxp5q3icgpyf88kqv"; depends=[ggplot2 neuralnet nnet reshape2 RSNNS scales]; };
 Newdistns = derive { name="Newdistns"; version="2.0"; sha256="1jgv9jl6pvsjgjsbjvmjg8qwjx4gsmp4kd27pbqxldp0qp0q9mjf"; depends=[AdequacyModel]; };
 NightDay = derive { name="NightDay"; version="1.0.1"; sha256="0vkpr2jwhgghiiiaiglaj1b9pz25fcsl628c9nsp9zyl67982wz1"; depends=[maps]; };
-Nippon = derive { name="Nippon"; version="0.5.3"; sha256="02m591aljlaxn95k7sl8gfsviv4ywqv9mrkjf6g19kfrc9pbgjqg"; depends=[maptools]; };
+Nippon = derive { name="Nippon"; version="0.6.1"; sha256="0fby543cxlzyd0vpv4xjiqi1hxrrcdxm2rafq3w3crkfid4qm95g"; depends=[maptools sp]; };
 NlsyLinks = derive { name="NlsyLinks"; version="1.302"; sha256="0m1qvrpdfwql4jdk3nbn80llq83wavimifw630gnazwmkgkcncai"; depends=[lavaan]; };
 NominalLogisticBiplot = derive { name="NominalLogisticBiplot"; version="0.2"; sha256="0m9442d9i78x57gdwyl3ckwp1m6j27cam774zkb358dw5nmwxbmz"; depends=[gmodels MASS mirt]; };
 NonpModelCheck = derive { name="NonpModelCheck"; version="1.0"; sha256="0mgbyp651jfqyfavpv12i9kwqf0cpk2mzh9m0b5k4n759710qv8f"; depends=[dr MASS]; };
@@ -1306,7 +1306,6 @@ OLScurve = derive { name="OLScurve"; version="0.2.0"; sha256="1zqapfwgwy9rxnbhml
 ONETr = derive { name="ONETr"; version="1.0.2"; sha256="1b0djffn4bx6drq5j87s15dwvnjmvraxs52y4dr6micvd9hifa9a"; depends=[RCurl XML]; };
 OOmisc = derive { name="OOmisc"; version="1.2"; sha256="09vaxn5czsgn6wpr27lka40kzd76jzqgqxavf26ms3m9kkdf83g4"; depends=[]; };
 OPDOE = derive { name="OPDOE"; version="1.0-9"; sha256="0pf8rv5wydc8pl4x57g7bk2swjabaxdgijgsigjy5wihfcb48654"; depends=[crossdes gmp mvtnorm nlme orthopolynom polynom]; };
-OPE = derive { name="OPE"; version="0.7"; sha256="0ld3pr94ii1pmfk99qfwgria6ki2iz2hwmn7pj3cjwprv8jkcjji"; depends=[]; };
 OPI = derive { name="OPI"; version="2.1"; sha256="1pzw5b4gwf1q98547cgq7b363fn72ll0zlvcahy56wc1ci5ny3dd"; depends=[]; };
 ORCI = derive { name="ORCI"; version="1.1"; sha256="0xy5lvz2scz06fphjyhqbdhp4bizmv87a8xykp9dbgx8b4ssnqgz"; depends=[BiasedUrn BlakerCI PropCIs]; };
 ORCME = derive { name="ORCME"; version="2.0.1"; sha256="0wr4z19alyp2cvlpg4bs8sni6nrwnhk11bbr00ycqym39alr2wjw"; depends=[Iso]; };
@@ -1315,12 +1314,14 @@ ORIClust = derive { name="ORIClust"; version="1.0-1"; sha256="1biddddyls2zsg71w4
 ORMDR = derive { name="ORMDR"; version="1.3-2"; sha256="0y7b2aja3zvsd6lm7jal9pabcfxv16r2wh0kyzjkdfanvvgk3wmm"; depends=[]; };
 OUwie = derive { name="OUwie"; version="1.45"; sha256="1g1315g015pcnd7g8k0vngjg7f842nq8ixhmqnj64by4vsafliva"; depends=[ape corpcor lattice nloptr numDeriv phangorn phytools]; };
 Oarray = derive { name="Oarray"; version="1.4-5"; sha256="1w66vqxvqyrp2h6acnbg3xy7cp6j2dgvzmqqk564kvivbn40vyy4"; depends=[]; };
+OasisR = derive { name="OasisR"; version="1.0.0"; sha256="0anw1ncbjjmlnhigcfwm9zqmp4ah5cfbmmm3588k95xxp6xq9vmv"; depends=[rgdal rgeos spdep]; };
 OceanView = derive { name="OceanView"; version="1.0.3"; sha256="0k281r358xg599n3h4avwbhnhgcfdawf36p8k3sxwv29292npkzv"; depends=[plot3D plot3Drgl rgl shape]; };
 Ohmage = derive { name="Ohmage"; version="2.11-4"; sha256="14pga59ikiywyl6xnfd2d8sy323vyn88q9sf101bcwp0s0qczwzg"; depends=[RCurl RJSONIO]; };
 OjaNP = derive { name="OjaNP"; version="0.9-8"; sha256="010l75irgj7nl8yq6crp8d00zjgpv9wg2maw99cj0frhqxvqzbfz"; depends=[ICS ICSNP]; };
 OligoSpecificitySystem = derive { name="OligoSpecificitySystem"; version="1.3"; sha256="17mspf1ph2ybv046zckykfdcbrsiz40hrs6ib5mpwkfnrvsp1w7l"; depends=[tkrplot]; };
 OmicKriging = derive { name="OmicKriging"; version="1.3"; sha256="1fj131684faj75jdipmsvb8s684x72is6zz79hwb5wszklk00ind"; depends=[doParallel irlba ROCR]; };
 Oncotree = derive { name="Oncotree"; version="0.3.3"; sha256="147rc9ci66lxbb91ys2ig40sgmldi15p604yysrd4ccbxpbk2zwf"; depends=[boot]; };
+OneArmPhaseTwoStudy = derive { name="OneArmPhaseTwoStudy"; version="0.1.3"; sha256="1jhvd5k99yg2n0g1m09wvbjmjynzxg3aafzsp0r00yf7bra3c6q7"; depends=[Rcpp]; };
 OneTwoSamples = derive { name="OneTwoSamples"; version="1.0-3"; sha256="0019rc2f4jmbm6sinkvalvjqwi822x78aiin88kg8qbbb5ml8l89"; depends=[]; };
 OpasnetUtils = derive { name="OpasnetUtils"; version="1.2.0"; sha256="1ckagq14w9923a4x7pk9mfzqcfayi00apwd2kvqzgd0s6355r1q7"; depends=[digest ggplot2 httpRequest plyr RCurl reshape2 rgdal rjson sp triangle xtable]; };
 OpenCL = derive { name="OpenCL"; version="0.1-3"; sha256="0f7vis0jcp0nh808xbzc73vj7kdcjb0qqzzsh3gvgamzbjfslch8"; depends=[]; };
@@ -1332,7 +1333,7 @@ OptHedging = derive { name="OptHedging"; version="1.0"; sha256="0g7qaf5abvbcqv2h
 OptInterim = derive { name="OptInterim"; version="3.0.1"; sha256="1ks24yv5jjhlvscwjppad27iass59da1mls99hlif0li9mvkbvyk"; depends=[clinfun mvtnorm]; };
 OptimalCutpoints = derive { name="OptimalCutpoints"; version="1.1-3"; sha256="1vrbx62080r9sgk9ipjvdrqvikp4gwidp5gi5j92hspk7cp10amg"; depends=[]; };
 OptionPricing = derive { name="OptionPricing"; version="0.1"; sha256="0j98h3fn29xfv7xyp7av459v56chw99pnvmsbqvrv4g77p60f5q2"; depends=[]; };
-OrdFacReg = derive { name="OrdFacReg"; version="1.0.5"; sha256="1if6ghagj2196pc73ankfrcms0snlpibgfca1c6lhj96m1waahg2"; depends=[eha MASS survival]; };
+OrdFacReg = derive { name="OrdFacReg"; version="1.0.6"; sha256="16mavsmp6d8rfmimmp5ynwyzir0gycpg8rhd8cwanlrndyclqlpv"; depends=[eha MASS survival]; };
 OrdLogReg = derive { name="OrdLogReg"; version="1.1"; sha256="18s75pmz1g3yac2rfl41kj8sfflq298qkijnvqlybgxpq98ickxx"; depends=[LogicReg]; };
 OrdMonReg = derive { name="OrdMonReg"; version="1.0.3"; sha256="1xca8pvvq79j484l2rmn4nva8ncx8z51g5diljikck231y8qjqaz"; depends=[]; };
 OrdNor = derive { name="OrdNor"; version="1.0"; sha256="1n6c0d4r1w3n016lzk2i5yyvawk9pgmsbzymbbyq7gx8a80iv32h"; depends=[corpcor GenOrd Matrix mvtnorm]; };
@@ -1371,7 +1372,6 @@ PDQutils = derive { name="PDQutils"; version="0.1.2"; sha256="1782nnw5mag4impfs0
 PDSCE = derive { name="PDSCE"; version="1.2"; sha256="17lc6d8ly6jbvjijpzg45dvqrzrh5s1sp415nycazgpbg9ypwr2h"; depends=[]; };
 PEIP = derive { name="PEIP"; version="2.0-1"; sha256="0zfvp3ngc4320sh6r6y746zxigr2wqgaqasnlkv3hxhzpzxq08lj"; depends=[bvls Matrix pracma RSEIS]; };
 PEMM = derive { name="PEMM"; version="1.0"; sha256="18dd9hsbdrnhrrff7gpdqrw2jv44j8lg0v3lkcdpbd4pppcaq84h"; depends=[]; };
-PERregress = derive { name="PERregress"; version="1.0-8"; sha256="1rhridhfgvrz14h61psfyr5ll13fvxj4b9fwrnlnc6lyqi01wjlc"; depends=[]; };
 PET = derive { name="PET"; version="0.4.9"; sha256="1ijg6mfh3xrc1gjh6a4nq64psk9yh16yc8nfp7c9837xbjigqq7f"; depends=[adimpro]; };
 PF = derive { name="PF"; version="9.5"; sha256="1y99brdabj78s5kxyv0136s40kaaj3zya9lk4qd0kqk83z2gdawp"; depends=[gdata RColorBrewer xtable]; };
 PGICA = derive { name="PGICA"; version="1.0"; sha256="0qxa5hw2s3mndjvk8lb82pcbyj1kbdclx4j4xa8jq0lcj180abi9"; depends=[fastICA]; };
@@ -1381,12 +1381,10 @@ PHENIX = derive { name="PHENIX"; version="1.2"; sha256="0fnrx2xf6q9ng9pwfxbbbzvc
 PHYLOGR = derive { name="PHYLOGR"; version="1.0.8"; sha256="17lmjfbwf8j68zzzhdvppyjacdsmy4zmcfj0pcjsw5j6m361hvh6"; depends=[]; };
 PHeval = derive { name="PHeval"; version="0.5.2"; sha256="1q0cyq7b8d42jgiw7ra9vjdjw1zcxpyg6wgb3zgygkmd744ifggp"; depends=[survival]; };
 PIGE = derive { name="PIGE"; version="0.9"; sha256="1x8ml25mm69dvlszm9p2ycph92nxcsgd52ydj7ha0dwrrpcv2law"; depends=[ARTP snowfall survival xtable]; };
-PIGShift = derive { name="PIGShift"; version="1.0.0"; sha256="15cgpi7j5cs4aqdq5cy7535x8ar916d9hd109kc01njrwxp1xr96"; depends=[ape mvtnorm]; };
 PIPS = derive { name="PIPS"; version="1.0.1"; sha256="1c5v3s6xys9p1q32k6mpsffhi9gwsq951rh12hs76dmak862yspc"; depends=[]; };
 PK = derive { name="PK"; version="1.3-2"; sha256="0162ri9wlm9inryljal48av8yxb326na94kckkigsrklfxb3wkp2"; depends=[]; };
 PKI = derive { name="PKI"; version="0.1-1"; sha256="1m4q43yq8ddig15k0j9yg9hq4yz3yplqp68zl3p9g2shkam60p6w"; depends=[base64enc]; };
 PKPDmodels = derive { name="PKPDmodels"; version="0.3.2"; sha256="1h893civ77ahbgjnc6kq3l7rszmqmx9dlxwavldigpq3r79vd86k"; depends=[]; };
-PKfit = derive { name="PKfit"; version="1.2.5"; sha256="0kym2dwb4f53xmf8dq94jz0zmpaiv8pl956j1bs3h9nhhzlaj83y"; depends=[deSolve minpack_lm optimx]; };
 PKgraph = derive { name="PKgraph"; version="1.7"; sha256="0g36cdv5cblqx69j48irxjc5nlw2cl3p714mlsblnd3362z1brwn"; depends=[cairoDevice ggplot2 gWidgetsRGtk2 lattice proto rggobi RGtk2]; };
 PKreport = derive { name="PKreport"; version="1.5"; sha256="16hss9migbxpnw5f9gcw1nlvb81iyji00ylx5wd6kdwhz0ids9wj"; depends=[ggplot2 lattice]; };
 PLIS = derive { name="PLIS"; version="1.1"; sha256="0b81s7677wglqvv1b5lx8k2iaks09kz0wrl07245a7j2pk9nxv7p"; depends=[]; };
@@ -1397,7 +1395,7 @@ PMA = derive { name="PMA"; version="1.0.9"; sha256="11qwgw4sgzl3xhrm468bsza83h3m
 PMCMR = derive { name="PMCMR"; version="1.1"; sha256="0f3882rjyxlcr183qa9y22bxh8nqp307v065aiy61ii0kizj9f70"; depends=[]; };
 PP = derive { name="PP"; version="0.5.3"; sha256="17y1v2536n7ap0kvllwkmndmdjf4wgwl171c053ph45krv37mscf"; depends=[Rcpp]; };
 PPtree = derive { name="PPtree"; version="2.3.0"; sha256="002qjdx52r2h90wzrf2r3kz8fv3nwx08qbp909whn6r4pbdl532v"; depends=[MASS penalizedLDA]; };
-PPtreeViz = derive { name="PPtreeViz"; version="1.0.3"; sha256="0m0nw6kh8ybgdih2d10b8q8q0wknrbppad8nq8jmq85sm0xrrysj"; depends=[ggplot2 gridExtra Rcpp RcppArmadillo reshape2]; };
+PPtreeViz = derive { name="PPtreeViz"; version="1.1.0"; sha256="0rdic7xdb5brxkhdrfcr7mdzxz1a02kjjkln7vwxnqxrhicx6pwz"; depends=[ggplot2 gridExtra Rcpp RcppArmadillo reshape2]; };
 PRISMA = derive { name="PRISMA"; version="0.2-5"; sha256="06z4z1rbsk5a8kpbs6ymm0m02i8dwbmv783c3l2pn4q3pf6ncmd5"; depends=[ggplot2 gplots Matrix]; };
 PROFANCY = derive { name="PROFANCY"; version="1.0"; sha256="11a0fpsv1hy0djv36x2i2hv2j50ryy0x7g7nn7vv76m1sl6q6r4b"; depends=[igraph lattice Matrix]; };
 PROTOLIDAR = derive { name="PROTOLIDAR"; version="0.1"; sha256="0bz3071b0wlcvh40vl3dyiiixk5avsj6kjjnvlvx264i5g08rij4"; depends=[]; };
@@ -1413,7 +1411,7 @@ PTAk = derive { name="PTAk"; version="1.2-9"; sha256="1wbjak8dp53601z39kkpa4ysm2
 PTE = derive { name="PTE"; version="1.0"; sha256="10if2hh69yysi2y82m7is74hmzw2xpxijgb8bhy1d4g9n9lqidfs"; depends=[doParallel]; };
 PVAClone = derive { name="PVAClone"; version="0.1-2"; sha256="0afl2il5wdcwzpyhjkgq8iz16q1086c3ndr4cjlyspgbss9h5l24"; depends=[dclone dcmle]; };
 PVR = derive { name="PVR"; version="0.2.1"; sha256="1p87pj9g0qlc8ja6xdj2amny9pbkaqb34x2y9nkl1nj1pkwjq2s5"; depends=[ape splancs]; };
-Pade = derive { name="Pade"; version="0.1-2"; sha256="144wzwh5wy9hmxd4ng6k601ppvdbqn6hrx210kj266dlapwyg8l2"; depends=[]; };
+Pade = derive { name="Pade"; version="0.1-3"; sha256="0jysdk55gnxa3x0j9v7r7qqqim0wfjph1v3amn08xf5wh5fd68yi"; depends=[]; };
 PairViz = derive { name="PairViz"; version="1.2.1"; sha256="0mjp5p6n5azbhrm2hvb9xyqjfhd49pw9ia8k70749yc96ws1qqc7"; depends=[graph gtools TSP]; };
 PairedData = derive { name="PairedData"; version="1.0.1"; sha256="025h5wjsh9c78bg6gmg6p6kvv2s6d5x7fzn3mp42mlybq0ry78p0"; depends=[ggplot2 gld lattice MASS mvtnorm]; };
 Paneldata = derive { name="Paneldata"; version="1.0"; sha256="00hk340x5d4mnpl3k0hy1nypgj55as2j7y2pgzfk3fpn3zls5zib"; depends=[]; };
@@ -1457,14 +1455,14 @@ PolynomF = derive { name="PolynomF"; version="0.94"; sha256="006ds50ivq91v2jyhgp
 Pomic = derive { name="Pomic"; version="1.0.2"; sha256="1i3zsz7gc4n4vid3yi3srrv04qk1678wqyyw303pfibiyfd4m80q"; depends=[]; };
 PopED = derive { name="PopED"; version="0.2.0"; sha256="00qbwabzjb4ns9y9a4gg73zxpx02xcycbm19bdk9z1mv06fkg9dj"; depends=[codetools dplyr ggplot2 MASS mvtnorm nlme]; };
 PopGenKit = derive { name="PopGenKit"; version="1.0"; sha256="0l4mbm0cyppgvcw2cbimrv29aiciyj00k8wfwcj5zr8sh7fgfhs4"; depends=[]; };
-PopGenReport = derive { name="PopGenReport"; version="2.1"; sha256="040h7cvnh1xqlbsyg1lkfiz88421myr47r63v466bxidwb17bqg2"; depends=[ade4 adegenet calibrate dismo gap gdistance genetics GGally ggplot2 knitr lattice mmod pegas plyr R_utils raster reshape rgdal RgoogleMaps sp vegan xtable]; };
+PopGenReport = derive { name="PopGenReport"; version="2.2"; sha256="0chpfgxpjbp0ci1h2q60gsbwdbqw14wa3pd7y6la3bz7pmsdbnwf"; depends=[ade4 adegenet calibrate data_table dismo gap gdistance genetics GGally ggplot2 knitr lattice mmod pegas plyr R_utils raster reshape rgdal RgoogleMaps sp vegan xtable]; };
 PopGenome = derive { name="PopGenome"; version="2.1.6"; sha256="1wk5k5f80l7k6haiaikhgaqn67q5n7gm632i3yz3frj1ph7bwjb7"; depends=[ff]; };
-PopVar = derive { name="PopVar"; version="1.1"; sha256="1125yynxdg13r84wzbm2h50yqhw1if0zrkaqlcjvmavymmx0vln2"; depends=[BGLR qtl rrBLUP]; };
+PopVar = derive { name="PopVar"; version="1.2.1"; sha256="09az5wa0zai6axhvrljqdjn74nb7jikqwjqy8f570qxb6jbgfgay"; depends=[BGLR qtl rrBLUP]; };
 PortRisk = derive { name="PortRisk"; version="1.0"; sha256="0vyzvi56lmdlhxpbxcxcfqa8271jv2l45w7x1kzzwl6q0wm4bjln"; depends=[zoo]; };
 PortfolioAnalytics = derive { name="PortfolioAnalytics"; version="1.0.3636"; sha256="0xva3ff8lz05f1jvx8hgn8rpgr658fjhf3xyh9ga1r7dii13ld50"; depends=[foreach PerformanceAnalytics xts zoo]; };
 PottsUtils = derive { name="PottsUtils"; version="0.3-2"; sha256="05ds0a7jq63zxr3jh66a0df0idzhis76qv6inydsjk2majadj3zv"; depends=[miscF]; };
 PoweR = derive { name="PoweR"; version="1.0.4"; sha256="00y0dvrsbvz8mr8mdw7fk17s5dfgm0f641qg96039y6g3hk2rn77"; depends=[Rcpp RcppArmadillo]; };
-Power2Stage = derive { name="Power2Stage"; version="0.3-1"; sha256="0a5llzbhl6s71bh21ka2x50pjissl9gg7f5sskailzcmi60yz2zk"; depends=[PowerTOST]; };
+Power2Stage = derive { name="Power2Stage"; version="0.4-1"; sha256="0g2gvi890hv497h7344j0rnf16k375nlbmxq9v4vh65wkb2bp140"; depends=[PowerTOST]; };
 PowerTOST = derive { name="PowerTOST"; version="1.2-07"; sha256="0d8nbha0jwkz4phiddpfm32kf8hjrkck05y3w60f40110j9f8yy7"; depends=[mvtnorm]; };
 PracTools = derive { name="PracTools"; version="0.2"; sha256="1njnm0rk2z9p3p8wsj881mddqhpayh56gyyis4cwb5b6pc344s9p"; depends=[]; };
 PredictABEL = derive { name="PredictABEL"; version="1.2-2"; sha256="08c7j2in1wlas6nmy44s08cq86h5fizqbhsnq312dllqdzmb2h9s"; depends=[epitools Hmisc PBSmodelling ROCR]; };
@@ -1482,7 +1480,7 @@ PropCIs = derive { name="PropCIs"; version="0.2-5"; sha256="0wnc5h4390w4rglr7gjh
 PropClust = derive { name="PropClust"; version="1.4-2"; sha256="13ac895i7ljayyqcjjmwvwar6wf1j0qssazcb5nlz8rw155qwavs"; depends=[dynamicTreeCut flashClust]; };
 PropScrRand = derive { name="PropScrRand"; version="1.1"; sha256="0cj62dzg4zm8d1g8h7qmviiwm93cwplppbi0p674fmmf1wy84v9s"; depends=[]; };
 PsumtSim = derive { name="PsumtSim"; version="0.4"; sha256="0079kb1bgsxs4cwmn33rbbk2jgq39rdjfgz9k9hc64iyzz0i6na3"; depends=[boot EffectsRelBaseline]; };
-PtProcess = derive { name="PtProcess"; version="3.3-9"; sha256="1pgxi6085l6wwcn354rm8zkrm7nvjmyad6627fh5561y9ksws08k"; depends=[]; };
+PtProcess = derive { name="PtProcess"; version="3.3-10"; sha256="175gdyvj1l1d3vm00p0z4sn1ggaf3hly383ngzx2l029nsrxz0zf"; depends=[]; };
 PubBias = derive { name="PubBias"; version="1.0"; sha256="0dr5dhfx57knrs05pbx9ngg4k2937n8gjzsgd0jfqd8dfxhy051k"; depends=[R_utils rmeta]; };
 PubMedWordcloud = derive { name="PubMedWordcloud"; version="0.3.2"; sha256="1xn4ygpvj6pm548yj5kjh2l8n59p2caihfpbkykvbkzgf7hq8p00"; depends=[RColorBrewer RCurl stringr tm wordcloud XML]; };
 PurBayes = derive { name="PurBayes"; version="1.3"; sha256="0nbm4cyrwfbwwbjbjkylr86cshaqbvbif6dkp4fag8kbcgyyx5qh"; depends=[rjags]; };
@@ -1534,7 +1532,7 @@ R330 = derive { name="R330"; version="1.0"; sha256="01sprsg7kph62abhymm8zfqr9bd6
 R4CDISC = derive { name="R4CDISC"; version="0.3"; sha256="0443mzkhsbrvsl7vawfpabsdqbqr9yjyyhsw1y07yncy55ylc2v5"; depends=[XML]; };
 R4CouchDB = derive { name="R4CouchDB"; version="0.7.1"; sha256="08s999m1kfjzabng41d5fpkag7nrdbricnw7m4jvj1ssqfnil2hj"; depends=[bitops RCurl RJSONIO]; };
 R4dfp = derive { name="R4dfp"; version="0.2-4"; sha256="02crzjphlq4hi2crh9lh8l0acmc1rgb3wr1x8sn56cwhq4xzqzcb"; depends=[]; };
-R6 = derive { name="R6"; version="2.0.1"; sha256="0ngm3hl0q3aj067q6q0iqh729z8jx3ydvasj1jw9qrr7bzjh1jn5"; depends=[]; };
+R6 = derive { name="R6"; version="2.1.0"; sha256="0vszmwpc32h3gd5jxr47v338nci69cj30wf0b6hkmwznq34hwdfc"; depends=[]; };
 RAD = derive { name="RAD"; version="0.3"; sha256="0nmgsaykxavq2bskq5x0jvsxzsf4w2gqc0z80a59376li4vs9lpj"; depends=[MASS mvtnorm]; };
 RADami = derive { name="RADami"; version="1.0-3"; sha256="0rg07dsh2rlldajcj0gq5sgsl1i3qa28bsrmq88xcljg5hnr4iqn"; depends=[ape Biostrings geiger phangorn]; };
 RAM = derive { name="RAM"; version="1.2.1"; sha256="11ymhx0nk113cy068s52hjj38y8glv8nh24yljqqvr1fd9fmy64g"; depends=[ade4 ape data_table FD ggmap ggplot2 gplots gridExtra Hmisc labdsv lattice MASS permute phangorn phytools plyr RColorBrewer reshape reshape2 RgoogleMaps scales vegan VennDiagram]; };
@@ -1550,6 +1548,7 @@ RAppArmor = derive { name="RAppArmor"; version="1.0.1"; sha256="06j7ghmzw2rrlk8n
 RArcInfo = derive { name="RArcInfo"; version="0.4-12"; sha256="1j1c27g2gmnxwslff4l0zivi48qxvpshmi7s9wd21cf5id0y4za4"; depends=[RColorBrewer]; };
 RAtmosphere = derive { name="RAtmosphere"; version="1.1"; sha256="0mk43bq28hlrjwaycsxca458k8xf00q58czgc17d8yx3kz17a5i0"; depends=[]; };
 RBPcurve = derive { name="RBPcurve"; version="1.0-20"; sha256="1fk2zj16xj8n9jnydzd60crdfsigqd6xs2hq572b9r65ldiikv3z"; depends=[BBmisc checkmate mlr shape TeachingDemos]; };
+RBitly = derive { name="RBitly"; version="0.6.1"; sha256="0lwwx9la3dhjy4r14kn8lgz85wwnk59ammn7jh45z2nyk7zflkdr"; depends=[httr jsonlite stringr]; };
 RCA = derive { name="RCA"; version="1.4.5"; sha256="0s200s28a6gh3dggad52dgqnf0k2jsfrqv1hbg8w2529v4s3dc5i"; depends=[igraph]; };
 RCALI = derive { name="RCALI"; version="0.2-15"; sha256="0w9807dyjghqy1rnv2c0k4kdjlwxzg5fk5r3rsqrmzjj4r8x9g9w"; depends=[splancs]; };
 RCEIM = derive { name="RCEIM"; version="0.2"; sha256="0l3lfx3zqxf310rhvjkn977xchxzi7cbzij3ks0nqlx55x5ica9w"; depends=[]; };
@@ -1561,7 +1560,7 @@ RClimMAWGEN = derive { name="RClimMAWGEN"; version="1.1"; sha256="0icy560llfd10m
 RColorBrewer = derive { name="RColorBrewer"; version="1.1-2"; sha256="1pfcl8z1pnsssfaaz9dvdckyfnnc6rcq56dhislbf571hhg7isgk"; depends=[]; };
 RConics = derive { name="RConics"; version="1.0"; sha256="1lwr7hi1102gm8fi9k5ra24s0rjmnkccihhqn3byckqx6y8kq7ds"; depends=[]; };
 RCryptsy = derive { name="RCryptsy"; version="0.2"; sha256="1sm6l2jbaxia53dqivii5g7pqbczvjk53c2v2vz65qz1qnrmrybj"; depends=[RCurl RJSONIO]; };
-RCurl = derive { name="RCurl"; version="1.95-4.6"; sha256="145li081kqa07w3bzb5zaad6jkr3zr0hcpkjwar76ybrvc4jyi4s"; depends=[bitops]; };
+RCurl = derive { name="RCurl"; version="1.95-4.7"; sha256="1qsxffqcb3lg3zkq6l1l78bm52szlk4d2y2bnmxn4lg0i4yxfx48"; depends=[bitops]; };
 RDIDQ = derive { name="RDIDQ"; version="1.0"; sha256="09gincmxv20srh4h82ld1ifwncaibic9b30i56zhy0w35353pxm2"; depends=[]; };
 RDML = derive { name="RDML"; version="0.8-4"; sha256="0zrzi81rlxz8hrpz19g7v470fh930n5y6brn6mjq52shn0ap742m"; depends=[assertthat dplyr plyr R6 XML]; };
 RDS = derive { name="RDS"; version="0.7-2"; sha256="143pb13wg0ms9zaiilb3ylqj6r6bcy4iqbq19j57z33i1q6ll51c"; depends=[ggplot2 gridExtra igraph reshape2 scales]; };
@@ -1599,7 +1598,6 @@ RGtk2Extras = derive { name="RGtk2Extras"; version="0.6.1"; sha256="19gjz2bk9dix
 RH2 = derive { name="RH2"; version="0.2.3"; sha256="1qbxy600fc8k2xl70liggdgg03ga6a8yad001banqzdmh508wcxl"; depends=[chron rJava RJDBC]; };
 RHRV = derive { name="RHRV"; version="4.0"; sha256="16xmmmw8gsqalbqf59xwpkd2bkfwxrdx8bwdn875bizx7mn0bql7"; depends=[nonlinearTseries tkrplot waveslim]; };
 RHT = derive { name="RHT"; version="1.0"; sha256="1gxf8nhj3y92h8al7l3fxa45wc568kb3cykrbdjlsy2zjacf7fcc"; depends=[]; };
-RHive = derive { name="RHive"; version="2.0-0.2"; sha256="0a1saqqwh6zvz264jkkd6c9abxpsg1j4yfivb5h773i76pzhvqc3"; depends=[rJava]; };
 RI2by2 = derive { name="RI2by2"; version="1.2"; sha256="0387ncq1nhpz8521nwsjybsdpncm56nrwkz68apgihmrbjlmp6m7"; depends=[gtools]; };
 RIFS = derive { name="RIFS"; version="0.1-5"; sha256="0705dhirh7bhy2yf3b1mpk3m7lggg4pwy640lvaspwaxkd6zac5w"; depends=[]; };
 RIGHT = derive { name="RIGHT"; version="0.2.0"; sha256="1mwm7l5l2hj67j03d895rx1181hax31a0nn3nq7rjcgpbljd2gjx"; depends=[ggplot2 plyr rjson shiny]; };
@@ -1644,7 +1642,7 @@ ROCR = derive { name="ROCR"; version="1.0-7"; sha256="1jay8cm7lgq56i967vm5c2hgax
 ROCS = derive { name="ROCS"; version="1.2"; sha256="1liph11p5dwvm1z5vq7ph5pizzqrm6ami94cq6y5kvm2qyv0jfah"; depends=[rgl]; };
 ROCt = derive { name="ROCt"; version="0.8"; sha256="1k0571gq7igg56qxwf9ibk28v763ji0w9183gs6qp95lpbyp5zwr"; depends=[date relsurv survival]; };
 ROCwoGS = derive { name="ROCwoGS"; version="1.0"; sha256="029nramxwhzqim315g1vkg1zsszzkic28w6ahwg9n7bk9d08adzk"; depends=[]; };
-RODBC = derive { name="RODBC"; version="1.3-11"; sha256="1j6qv7w4klgwzdx9jf6h4l1x1idn3rka70ql37pbnzga1h5dr9yy"; depends=[]; };
+RODBC = derive { name="RODBC"; version="1.3-12"; sha256="042m7bwjhlzpq2hgzsq0zy4ri3s8ngw3w4qrqh1ag7fprpn55flj"; depends=[]; };
 RODBCext = derive { name="RODBCext"; version="0.2.3"; sha256="0j0774gpnd72mw3x9qv7shiwrk0s5rk8hf0wjq4iy42wwbvql7l6"; depends=[RODBC]; };
 RODM = derive { name="RODM"; version="1.1"; sha256="0cyi2y3lsw77gqxmawla5jlm4vnhsagh3ykdgb6izxslc4j2fszx"; depends=[RODBC]; };
 ROI = derive { name="ROI"; version="0.1-0"; sha256="01za8cxjf721m2lxnw352k8g32pglmllk50l7b8yhjwc49k8rl66"; depends=[registry slam]; };
@@ -1663,6 +1661,7 @@ RPEnsemble = derive { name="RPEnsemble"; version="0.2"; sha256="1kbgpbk7gma0vhl0
 RPMG = derive { name="RPMG"; version="2.1-7"; sha256="1nkmnqrys65vg377mys6qzpbwfh43adgy76c6jfdg336nf8qx2wd"; depends=[]; };
 RPMM = derive { name="RPMM"; version="1.20"; sha256="09rwrcd8jz0nii1vx0n3b4daidiq0kp0vf88bvi84y4i06743il7"; depends=[cluster]; };
 RPPairwiseDesign = derive { name="RPPairwiseDesign"; version="1.0"; sha256="0k2vh698rhs5a0b5vhyvrnnwqnagdzs591zx6hn9vbmm8rm4y1dm"; depends=[]; };
+RPPanalyzer = derive { name="RPPanalyzer"; version="1.4.1"; sha256="1i9fcypi33qi7lz6rs1i5mvnbfma15jw6n5is03zdd1cjgrnss8r"; depends=[Biobase gam ggplot2 gplots Hmisc lattice limma quantreg]; };
 RPostgreSQL = derive { name="RPostgreSQL"; version="0.4"; sha256="0gpmbpiaiqvjzyl84l2l8v2jnz3h41v8jl99sp1qvvyrjrickra2"; depends=[DBI]; };
 RProtoBuf = derive { name="RProtoBuf"; version="0.4.2"; sha256="0ph6sdw0gys70sjlfimgvjk19rbj4v6p7wk05nar6wh8mabpvb63"; depends=[Rcpp RCurl]; };
 RPublica = derive { name="RPublica"; version="0.1.2"; sha256="1fawjkwfxx3z370132vsjjs3ls316gzxzlxp8b4vzrshx1p7vp3q"; depends=[httr jsonlite RCurl]; };
@@ -1670,7 +1669,7 @@ RPushbullet = derive { name="RPushbullet"; version="0.2.0"; sha256="1h9yvw9kw7df
 RQDA = derive { name="RQDA"; version="0.2-7"; sha256="05h2f5sk0a14bhzqng5xp87li24b6n11p5lcxf9xpy7sbmh5ig6g"; depends=[DBI gWidgets gWidgetsRGtk2 igraph RGtk2 RSQLite]; };
 RQuantLib = derive { name="RQuantLib"; version="0.4.0"; sha256="1p2hd7wa5yi5ian2akb70pjr4glfni4dvwgglyg5pqmmm2j45k2d"; depends=[Rcpp]; };
 RRF = derive { name="RRF"; version="1.6"; sha256="1gp224mracrz53vnxwfvd7bln18v8x7w130wslhfgcdl0n4f2d28"; depends=[]; };
-RRTCS = derive { name="RRTCS"; version="0.0.1"; sha256="05ws5n2ajisdh4gfzmilvkz6jvvbl6fiwkcjzwm8bll2rhl916z4"; depends=[sampling samplingVarEst]; };
+RRTCS = derive { name="RRTCS"; version="0.0.2"; sha256="0lwc0girdsrni6qv0z7bggqhlwlny4amgkayd8s3cdh3m006dn95"; depends=[sampling samplingVarEst]; };
 RRreg = derive { name="RRreg"; version="0.3.0"; sha256="0pip05wk76h436mvcsddhn2p25ihms3yf1lb23k7ygpx6jx4mdn3"; depends=[doParallel foreach]; };
 RSA = derive { name="RSA"; version="0.9.8"; sha256="1pqblhimhj79ss8js0nf8w24ga2kdmgw64rh496iib36g27asn8n"; depends=[aplpack ggplot2 lattice lavaan plyr RColorBrewer tkrplot]; };
 RSADBE = derive { name="RSADBE"; version="1.0"; sha256="1nzpm88rrzavk0n8iflsx8r3s1xcry15n80zqdw6jijjycz10w1q"; depends=[]; };
@@ -1750,7 +1749,7 @@ RcmdrPlugin_BCA = derive { name="RcmdrPlugin.BCA"; version="0.9-8"; sha256="0xki
 RcmdrPlugin_DoE = derive { name="RcmdrPlugin.DoE"; version="0.12-3"; sha256="1iifn71kjjgcp7dfz2pjq57mgbv4rrznrl3b3k9gdc2dva1z9zvc"; depends=[DoE_base DoE_wrapper FrF2 Rcmdr RcmdrMisc relimp]; };
 RcmdrPlugin_EACSPIR = derive { name="RcmdrPlugin.EACSPIR"; version="0.2-2"; sha256="10r6rb0fwlilcnqxa38zh7yxc54x1a0by5x4f6gzdn9zs7aj5l1r"; depends=[abind ez nortest R2HTML Rcmdr RcmdrMisc reshape]; };
 RcmdrPlugin_EBM = derive { name="RcmdrPlugin.EBM"; version="1.0-8"; sha256="0lkj869xdacvnma0qq20fqdsq59jqka2fv5h78f99lybzcb95i11"; depends=[abind epiR Rcmdr]; };
-RcmdrPlugin_EZR = derive { name="RcmdrPlugin.EZR"; version="1.28"; sha256="0by00cnfs0yciy1azqvmcbkbf6r8mr2451xjqqxfd4jwmhg3nrxl"; depends=[Rcmdr]; };
+RcmdrPlugin_EZR = derive { name="RcmdrPlugin.EZR"; version="1.29"; sha256="0ffhvh4542jr7slqr9rb118lfqgd58srcpi2p6y32xmk8s26idnx"; depends=[Rcmdr]; };
 RcmdrPlugin_EcoVirtual = derive { name="RcmdrPlugin.EcoVirtual"; version="0.1"; sha256="00yk09c1d1frwpfq12zvhg4gnc3p63r61abnil623jpr6wh4b2x8"; depends=[EcoVirtual Rcmdr]; };
 RcmdrPlugin_FactoMineR = derive { name="RcmdrPlugin.FactoMineR"; version="1.5-0"; sha256="1hfnn12l3jljqpczpxz4m9ywbmw5rc1c8dpfl4cabrxnh6ymnk1a"; depends=[FactoMineR Rcmdr]; };
 RcmdrPlugin_HH = derive { name="RcmdrPlugin.HH"; version="1.1-43"; sha256="0bn94wcrzvcrzhixh8kyg5gkax762mskhm2wvdfz1sm3n6fc7281"; depends=[HH lattice mgcv Rcmdr]; };
@@ -1759,7 +1758,7 @@ RcmdrPlugin_KMggplot2 = derive { name="RcmdrPlugin.KMggplot2"; version="0.2-0";
 RcmdrPlugin_MA = derive { name="RcmdrPlugin.MA"; version="0.0-2"; sha256="1zivlc0r2mkxpx23ba76njmb2wnnjijysvza4f24dg4l47d0sr2p"; depends=[MAd metafor Rcmdr]; };
 RcmdrPlugin_MPAStats = derive { name="RcmdrPlugin.MPAStats"; version="1.1.5"; sha256="0km6yglhn0128kk1xm2mnrkr2lkv3r9zndhlv7h1dkd16aph3vm3"; depends=[ordinal Rcmdr]; };
 RcmdrPlugin_NMBU = derive { name="RcmdrPlugin.NMBU"; version="1.8.0.4"; sha256="1qxx685wd974dc2zj7myg0jlxz5s63lkjfycc66f3mcj1qk5j4k6"; depends=[MASS mixlm pls Rcmdr xtable]; };
-RcmdrPlugin_RMTCJags = derive { name="RcmdrPlugin.RMTCJags"; version="1.0"; sha256="0fwzr27pk7p82wj1xbajva1ips15jdfgwxzf7815bcm7x7w9xr8v"; depends=[coda igraph Rcmdr rjags rmeta runjags]; };
+RcmdrPlugin_RMTCJags = derive { name="RcmdrPlugin.RMTCJags"; version="1.0-1"; sha256="1hk8gmv74mngcx2pjgv1zkdh2csixxgd4yqz38bdn1l2zf243czq"; depends=[coda igraph Rcmdr rmeta runjags]; };
 RcmdrPlugin_ROC = derive { name="RcmdrPlugin.ROC"; version="1.0-18"; sha256="0alwsvwry4k65ps00zvdqky9rh663bbfaw15lhwydbgcpqdkn2n6"; depends=[pROC Rcmdr ResourceSelection ROCR]; };
 RcmdrPlugin_SCDA = derive { name="RcmdrPlugin.SCDA"; version="1.1"; sha256="0pd765ndh8d7hy6spds3r4pi09i0ak4b1ygwczp6yr2zcs1aikbc"; depends=[Rcmdr SCMA SCRT SCVA]; };
 RcmdrPlugin_SLC = derive { name="RcmdrPlugin.SLC"; version="0.2"; sha256="1nwpzmgfla1y05dxf81w0wmvvmvcq5jn5k8phlq30920ia7ybs8g"; depends=[Rcmdr SLC]; };
@@ -1799,12 +1798,12 @@ RcppDL = derive { name="RcppDL"; version="0.0.5"; sha256="1gii00bna6k9byaax7gsx4
 RcppEigen = derive { name="RcppEigen"; version="0.3.2.4.0"; sha256="1p6lfylj0mh059pxbp198r8nci8f89h0gb11x2pi0jgg7cqbxgh6"; depends=[Matrix Rcpp]; };
 RcppExamples = derive { name="RcppExamples"; version="0.1.6"; sha256="1jnqh9nii5nncsah0lrkls8dqqcka9fnbvfg8ikl4cqjri17rpbv"; depends=[Rcpp]; };
 RcppFaddeeva = derive { name="RcppFaddeeva"; version="0.1.0"; sha256="1rah18sdfmbcxy83i7vc9scrwyr34kn9xljkv9pa31js68gn2jrl"; depends=[knitr Rcpp]; };
-RcppGSL = derive { name="RcppGSL"; version="0.2.4"; sha256="1nw1984siwxvihp68g7khr2c4a4nwyb4ll04r5302kksz4nh7mpi"; depends=[Rcpp]; };
+RcppGSL = derive { name="RcppGSL"; version="0.2.5"; sha256="16zvqgn4hkijsg5fxvzm6hq200w8z4189aag10zciw81ka4isqv5"; depends=[Rcpp]; };
 RcppMLPACK = derive { name="RcppMLPACK"; version="1.0.10-2"; sha256="1hdvdk6ni2iganmldarklv635yzgzja36zcpflh5w45c5y3ysqvj"; depends=[BH Rcpp RcppArmadillo]; };
 RcppOctave = derive { name="RcppOctave"; version="0.14.5"; sha256="0dplc2x9fq2jfzfbcxdd45pmiimapqb3xhyjkzd4k6q8xmqjw95p"; depends=[digest pkgmaker Rcpp stringr]; };
 RcppParallel = derive { name="RcppParallel"; version="4.3.14"; sha256="04kch598fqxkclv7ys8s9mqsd9wbzjqk1yjc66drzyycjc8jl9qi"; depends=[]; };
 RcppProgress = derive { name="RcppProgress"; version="0.2.1"; sha256="1dah99679hs6pcaazxyc52xpx5wawk95r2bpx9fx0i33fqs1s4ng"; depends=[Rcpp]; };
-RcppRedis = derive { name="RcppRedis"; version="0.1.3"; sha256="0xpldiny2n121dp7vpj9l3bjvjhbfkdim5cassvvj2wms9q4jvh5"; depends=[RApiSerialize Rcpp]; };
+RcppRedis = derive { name="RcppRedis"; version="0.1.4"; sha256="00cv6yicv247bbx617i4k4hfkl5kiv5q2ky84w3sk3g3f0wnp9np"; depends=[RApiSerialize Rcpp]; };
 RcppRoll = derive { name="RcppRoll"; version="0.2.2"; sha256="19xzvxym8zbighndygkq4imfwc0abh4hqyq3qrr8aakyd096iisi"; depends=[Rcpp]; };
 RcppSMC = derive { name="RcppSMC"; version="0.1.4"; sha256="1gcqffb6rkw029cpzv7bzsxaq0a5b032zjvriw6yjzyrpi944ip7"; depends=[Rcpp]; };
 RcppStreams = derive { name="RcppStreams"; version="0.1.0"; sha256="0pb9ri2jajfh7643wx730bkmpvjvvmip682ynm2yn6x6brjll6jf"; depends=[BH Rcpp]; };
@@ -1822,7 +1821,7 @@ ReacTran = derive { name="ReacTran"; version="1.4.2"; sha256="1yc0k3wgg4yb6cqmjk
 RealVAMS = derive { name="RealVAMS"; version="0.3-1"; sha256="04d4sc3lhlklx1y016rmh3x27m8caxlp53qn2ks5wz52w26pfdhn"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; };
 RecordLinkage = derive { name="RecordLinkage"; version="0.4-8"; sha256="0wjjrgmz7m11hhsw7dcg3745255xckdgrqp3xlqkyh2kzbyr9rp4"; depends=[ada data_table DBI e1071 evd ff ffbase ipred nnet rpart RSQLite xtable]; };
 Records = derive { name="Records"; version="1.0"; sha256="08y1g2m6bdrvv4rpkhd5v2lh7vprxy9bcx9ahp1f7p062bn2lwji"; depends=[]; };
-RedditExtractoR = derive { name="RedditExtractoR"; version="1.0.0"; sha256="197zqivkk00ch6vgh9cdqwjwj6gjfbzrvc0cpra1zk8b3h4qx5na"; depends=[RJSONIO]; };
+RedditExtractoR = derive { name="RedditExtractoR"; version="1.1.1"; sha256="00y9m55isnhx8bl82nc2rpll4aijkcrxqgkayqpp2yxy4rj6klfj"; depends=[RJSONIO]; };
 RefFreeEWAS = derive { name="RefFreeEWAS"; version="1.3"; sha256="1cb1q2nki0d18ia4cmi1sp7qih9hv7g1jk1kyp7vya5gp572z3cd"; depends=[isva]; };
 RefManageR = derive { name="RefManageR"; version="0.8.63"; sha256="17gmdyaqg8swfhpa1n8h1rj7aamrgdcprf56vx643ivhih8kgdj4"; depends=[bibtex lubridate plyr RCurl RJSONIO stringr XML]; };
 RegClust = derive { name="RegClust"; version="1.0"; sha256="1d9w74phw4fgafglc18j7dpmln96fvxnf1kdc9zddgj90p8yfx63"; depends=[]; };
@@ -1830,8 +1829,8 @@ RegressionFactory = derive { name="RegressionFactory"; version="0.7.1"; sha256="
 RelValAnalysis = derive { name="RelValAnalysis"; version="1.0"; sha256="1jl1gfj44gfkmc1yp6g5wwn4miydwpvxwrg76rnkv9454zrc5pvp"; depends=[zoo]; };
 Reliability = derive { name="Reliability"; version="0.0-2"; sha256="12zsicgbjqih3grbs62pw37x8wlkmnyc7g0yz6bqnfb4ym2yb7fg"; depends=[]; };
 ReliabilityTheory = derive { name="ReliabilityTheory"; version="0.1.4"; sha256="1faab4z3rp0xqc0s0rrkw4kxgyc332xz3sjaz1wd4p6kiydds2hi"; depends=[actuar combinat FRACTION HI igraph mcmc PhaseType sfsmisc]; };
-Renext = derive { name="Renext"; version="2.1-10"; sha256="1c18v9xya73j8qnqvkb4fc7bfvzxnw904z5n9n9rgch70nrccqfn"; depends=[evd numDeriv]; };
-RenextGUI = derive { name="RenextGUI"; version="1.0-2"; sha256="0ghs8bwb6qdyvhghxvdy51cibylgm7bdbzgqsn1nbxam39yhvfv9"; depends=[gWidgets gWidgetstcltk Renext]; };
+Renext = derive { name="Renext"; version="3.0-0"; sha256="0byjr9jf2wmcg9adcxfky544icj6fclyscjj2l93ynwpcs9lmjan"; depends=[evd numDeriv]; };
+RenextGUI = derive { name="RenextGUI"; version="1.3-0"; sha256="0ydq57k5va1l10dxyh4hvk3r6d0wncqx9ncj5bkc5691lamqjmj4"; depends=[gWidgets gWidgetstcltk Renext]; };
 Reol = derive { name="Reol"; version="1.55"; sha256="0147x3fvafc47zd2chgv3b40k480pcjpji8vm1d741i1p6ml448p"; depends=[ape RCurl XML]; };
 ReorderCluster = derive { name="ReorderCluster"; version="1.0"; sha256="0ss750frzvj0bm1w7zblmcsjpszhnbffwlkaw31sm003lbx9hy58"; depends=[gplots Rcpp]; };
 RepeatedHighDim = derive { name="RepeatedHighDim"; version="2.0.0"; sha256="1n9w4jb25pm0mmsahlfhkp9jmhgp5b21l1g85gm2wbxqkjsg7g0g"; depends=[MASS nlme]; };
@@ -1842,10 +1841,9 @@ ResourceSelection = derive { name="ResourceSelection"; version="0.2-4"; sha256="
 RevEcoR = derive { name="RevEcoR"; version="0.99.2"; sha256="100sman51vvwg5xkypmksyyjqdb6g858z29vn7x4kvly8ncw4hfd"; depends=[gtools igraph magrittr Matrix plyr stringr XML]; };
 Rfacebook = derive { name="Rfacebook"; version="0.5"; sha256="0cl4s815i4yxp805j8nhqmva31imbd1xp3yxgi53qwjhagh4i57a"; depends=[httpuv httr rjson]; };
 Rfit = derive { name="Rfit"; version="0.21"; sha256="129z5ivwfxbh3rfwk98jnm6ibq5z9z3r9mhy9gv61jfr4ig78dcn"; depends=[quantreg]; };
-Rglpk = derive { name="Rglpk"; version="0.6-0"; sha256="0g0s63skabr0yqk5s9p66p77z8v3pr3hbnirbgdddlvkpphi08xx"; depends=[slam]; };
+Rglpk = derive { name="Rglpk"; version="0.6-1"; sha256="011l60571zs6h8wmv4r834dg24knyjxhnmxc7yrld3y2qrhcl714"; depends=[slam]; };
 RgoogleMaps = derive { name="RgoogleMaps"; version="1.2.0.7"; sha256="04k7h8hgxvgsccdiysbblplwjvn8m7g8h3anzdlxmmjaamd8l9lw"; depends=[png RJSONIO]; };
-Rhh = derive { name="Rhh"; version="1.0.2"; sha256="0blxim8yrb0qnbkc1z2q24q6ryakggq2zhaa223swla99ahmsny3"; depends=[]; };
-Rhpc = derive { name="Rhpc"; version="0.15-147"; sha256="1cb60vsvv6vj0sa1p9p05d16xi446qqckjzbiz0lmiy7k43nyccm"; depends=[]; };
+Rhpc = derive { name="Rhpc"; version="0.15-176"; sha256="0amnr1x1zvh5y2cblx4wjw5y5wm1815x4rm7w03f0ri9qdk5i8ax"; depends=[]; };
 RhpcBLASctl = derive { name="RhpcBLASctl"; version="0.15-148"; sha256="1carylfz9gafradbdyg7fz2bypr7n72fbm8vhyiinmp0k4s5ipvc"; depends=[]; };
 RidgeFusion = derive { name="RidgeFusion"; version="1.0-3"; sha256="10llmrsfpcqrkcbw7zj44kvfy7ywn9rk49n7zplilz8h94zzcmjv"; depends=[mvtnorm]; };
 Ridit = derive { name="Ridit"; version="1.1"; sha256="02cni6hzf1bsns7vi8vklnhc0pfb5vwqhjnnfnjnnaxpzpsbvdfn"; depends=[]; };
@@ -1854,7 +1852,7 @@ Rivivc = derive { name="Rivivc"; version="0.9"; sha256="0gl3040pp9nqm4g2ympnx80z
 Rjpstatdb = derive { name="Rjpstatdb"; version="0.1"; sha256="0iwgsp3mblp7bsx88wfpqn09y1xrkingfkm3z9jsi2bwrnrjc2iv"; depends=[RCurl XML]; };
 Rlab = derive { name="Rlab"; version="2.15.1"; sha256="1pb0pj84i1s4ckdmcglqxa8brhjha4y4rfm9x0na15n7d9lzi9ag"; depends=[]; };
 Rlabkey = derive { name="Rlabkey"; version="2.1.127"; sha256="1bacl4ax9bgn27180hgh6gr4y0bwl3q4y18mc0cyb06yagzci5d9"; depends=[RCurl rjson]; };
-Rlibeemd = derive { name="Rlibeemd"; version="1.3.2"; sha256="0db6x2cry011ymmfy1pxgdyjdn6l93d8wmixp59r51yij2s775xq"; depends=[Rcpp]; };
+Rlibeemd = derive { name="Rlibeemd"; version="1.3.5"; sha256="1z691hfasq0iy9zq14xj5rb7na2gxppdaq8mczhxs8ql0fmsz4lf"; depends=[Rcpp]; };
 Rlinkedin = derive { name="Rlinkedin"; version="0.1"; sha256="0w30zv4a842vckk4yqsh8hhkdz2gy650a0x29aacp77p9y79g9yn"; depends=[httpuv httr XML]; };
 Rmalschains = derive { name="Rmalschains"; version="0.2-2"; sha256="1ki3igj78sk4kk1cvbzrgzjdvw6kbdb7dmqglh6ws2nmr5b6a7fx"; depends=[Rcpp]; };
 Rmisc = derive { name="Rmisc"; version="1.5"; sha256="1ijjhfy3v91fspid77rrkc5dkcb2lav37wc3f4k5lwrn24wzy5y8"; depends=[lattice plyr]; };
@@ -1895,7 +1893,7 @@ Rsolnp = derive { name="Rsolnp"; version="1.15"; sha256="10w9gd1l62r638sh00fbgcp
 Rsomoclu = derive { name="Rsomoclu"; version="1.4.1"; sha256="0yr0nsm2b7wg1x57db9zclqnqqbmhyax9vgw13ynqirq2ysxxsg6"; depends=[Rcpp]; };
 Rssa = derive { name="Rssa"; version="0.13"; sha256="1prcivlwxky4h33ybky7n3wpn4vj1wm898ifsrhs1j9ywla1m2zf"; depends=[forecast lattice svd]; };
 Rsundials = derive { name="Rsundials"; version="1.6"; sha256="0vrvxsznbclgls4jljc59lyli6cw9k1a3wapfrs6xbkqi8865iif"; depends=[]; };
-Rsymphony = derive { name="Rsymphony"; version="0.1-20"; sha256="10l3z9b51c8xsdfnscwn6g868xn84pfw3dlyj3vrsw3vs7qbi0gl"; depends=[]; };
+Rsymphony = derive { name="Rsymphony"; version="0.1-21"; sha256="0wjj1wlh45fhgbzfqh0rdxrahc68w1gkvzx6kx46m6ww7k6l3pqb"; depends=[]; };
 Rtsne = derive { name="Rtsne"; version="0.10"; sha256="14270gg0fp3imq9rafqj56ld56kzby7yyf5rg9z0wlimm7s72hy5"; depends=[Rcpp]; };
 Rttf2pt1 = derive { name="Rttf2pt1"; version="1.3.3"; sha256="16bnhrg86rzi4g4zf235m1g8amyhcwxpw0wgcxynfiinm2fl4y1n"; depends=[]; };
 Rtts = derive { name="Rtts"; version="0.3.1"; sha256="1zgrkj4y7267d1n8iw1q3pgf2lmmklkslf5211kl7v788zxqr9c5"; depends=[RCurl]; };
@@ -1903,7 +1901,7 @@ Ruchardet = derive { name="Ruchardet"; version="0.0-3"; sha256="0dgldi6fgp949c34
 Runiversal = derive { name="Runiversal"; version="1.0.2"; sha256="0667mspsjydmxi848c6wsf14gz72bmdj9b3lilma92b7fhqnv7ai"; depends=[]; };
 Runuran = derive { name="Runuran"; version="0.21.0"; sha256="1p33z9h2zj6fx42rlq6yajd6lwvzy4a1a5gs67dz5k1zbza8avw0"; depends=[]; };
 RunuranGUI = derive { name="RunuranGUI"; version="0.1"; sha256="0wm91mzgd01qjinj94fr53m0gkxjvx7yjhmwbkrxsjn6mjklq72l"; depends=[cairoDevice gWidgets gWidgetsRGtk2 Runuran rvgtest]; };
-Rvcg = derive { name="Rvcg"; version="0.11"; sha256="0id732zhncy6x47qdbyddcm3f8l1r4j53ya4qj3zcf81q15dadw0"; depends=[Rcpp RcppEigen]; };
+Rvcg = derive { name="Rvcg"; version="0.12.2"; sha256="15lj2ba9fwzbqzwwl7wpzij1n983qxmql2fwxjcapkl76hl68kp9"; depends=[Rcpp RcppEigen]; };
 Rvmmin = derive { name="Rvmmin"; version="2013-11.12"; sha256="1ljzydvizbbv0jv5lbfinypkixfy7zsvplisb866f8w45amd152a"; depends=[optextras]; };
 Rwave = derive { name="Rwave"; version="2.4"; sha256="1ynj6higx0j6iv033lx8h3i9hlg5b53nl2gv6fwjny4ygm8b1mjm"; depends=[]; };
 Rwinsteps = derive { name="Rwinsteps"; version="1.0-1"; sha256="0kzngkan9vydibnr3xm4pyz4v6kz0r4h19f0ngqpri07fkhdsxzd"; depends=[]; };
@@ -1937,7 +1935,6 @@ SDD = derive { name="SDD"; version="1.2"; sha256="0wzgm1hgjv5s00bpd7j387qbvn5zvy
 SDDE = derive { name="SDDE"; version="1.0.0"; sha256="1vd96w6qjy7ak85gj1c255fb0ifaffp79k6swqnvskvkq2cc524m"; depends=[doParallel foreach igraph iterators]; };
 SDMTools = derive { name="SDMTools"; version="1.1-221"; sha256="1kacrpamshv7wz83yn45sfbw4m9c44xrrngzcklnwx8gcxx2knm6"; depends=[R_utils]; };
 SDaA = derive { name="SDaA"; version="0.1-3"; sha256="0z10ba4s9r850fjhnrirj2jgnfj931vwzi3kw9502r5k7941lsx0"; depends=[]; };
-SE_IGE = derive { name="SE.IGE"; version="1.0"; sha256="0gx3kdsdl3rjms6fxabxz51z84r9mcy4934l2g43ifrxbyphnias"; depends=[]; };
 SEAsic = derive { name="SEAsic"; version="0.1"; sha256="1mg01sag6n1qldjvmvbasac86s7sbhi4k99kdkav2hdh6n9jg467"; depends=[]; };
 SECP = derive { name="SECP"; version="0.1-4"; sha256="0a4j0ggrbs0jzcph70hc4f5alln4kdn2mrkp3jbh321a6494kwl1"; depends=[SPSL]; };
 SEER2R = derive { name="SEER2R"; version="1.0"; sha256="0lk0kkp8sv3nl19zwqd7449mmjxsj3pqpzdmqf70qf8xh2pqyvzd"; depends=[]; };
@@ -1951,6 +1948,7 @@ SGCS = derive { name="SGCS"; version="2.3"; sha256="1c917g03s50mp96lqhkjagsd2cq9
 SGL = derive { name="SGL"; version="1.1"; sha256="1wc430jqn3li102zpfmyyavfbab7x7ww9p89clxsndyigrrbjdr7"; depends=[]; };
 SGP = derive { name="SGP"; version="1.2-0.0"; sha256="0v4ljhvfrvl6izprcrw8w36474fjz0v1kpcsg0sx32359amd3zxz"; depends=[Cairo colorspace data_table doParallel foreach gridBase iterators jsonlite plyr quantreg reshape2 RSQLite sn]; };
 SGPdata = derive { name="SGPdata"; version="8.0-0.0"; sha256="0g25s2wcj47394fm16maygafnynizma3mgb3r65b5p9c27swk4v8"; depends=[]; };
+SHELF = derive { name="SHELF"; version="1.0.1"; sha256="0nk63nrj0x1nlbwy885wmsipjcvhs8vqldlc33j4j8k49bkih7sz"; depends=[shiny]; };
 SHIP = derive { name="SHIP"; version="1.0.2"; sha256="0b83cclibdz1r7sz968nmca4najwgps9wrdlsh4gxrl7fq40k4ln"; depends=[]; };
 SID = derive { name="SID"; version="1.0"; sha256="1446zy4rqbw0lpyhnhyd06dzv238dxpdxgmsk34hqv7g3j7q5h1w"; depends=[igraph Matrix pcalg RBGL]; };
 SII = derive { name="SII"; version="1.0.3"; sha256="1k9mvz6g25qs351c0vx7n5h77kb6k833jrcww14ni59yc9jgvsyg"; depends=[]; };
@@ -1973,7 +1971,6 @@ SMPracticals = derive { name="SMPracticals"; version="1.4-2"; sha256="0apmkmsv2f
 SMR = derive { name="SMR"; version="2.0.1"; sha256="0qy56fmismcjklpf29ic2gi1g8ajdjpxsl0akb9cqzyisyf641ia"; depends=[]; };
 SMVar = derive { name="SMVar"; version="1.3.3"; sha256="17wr4lixy3p32gr4jq02d7zsr88yrbddjsvynzdsdrwbxf4mwqhp"; depends=[]; };
 SNFtool = derive { name="SNFtool"; version="2.2"; sha256="1d84ybsi91mr3ma4jzmr9606hg1q00yg0dn50vkjnyda50igcb1c"; depends=[heatmap_plus]; };
-SNPMClust = derive { name="SNPMClust"; version="1.0"; sha256="1vyag8axrl888qhjsbv7g84hzfsnvxh5ccdcdriamy50c2chkji8"; depends=[MASS mclust]; };
 SNPassoc = derive { name="SNPassoc"; version="1.9-2"; sha256="113byj8zbg6xyxb1qzm76sqfyk3fap0sd90691zzm1x2pbfnb3mh"; depends=[haplo_stats mvtnorm survival]; };
 SNPmaxsel = derive { name="SNPmaxsel"; version="1.0-3"; sha256="0pjvixwqzjd3jwccc8yqq9c76afvbmfq0z1w0cwyj8bblrjpx13z"; depends=[combinat mvtnorm]; };
 SNPtools = derive { name="SNPtools"; version="1.1"; sha256="0l29kiqz4048x7amxx1qzkaw2xnd6lpdsdp5nq3rck9amx2hw64a"; depends=[Biostrings GenomicRanges IRanges Rsamtools]; };
@@ -1994,7 +1991,6 @@ SPECIES = derive { name="SPECIES"; version="1.0"; sha256="0p45llf2wjr467bqr4pblj
 SPEI = derive { name="SPEI"; version="1.6"; sha256="0mbz4nydnzwypfbi1d9fjy09x6133q096qbfrc913dbidzkvfpqv"; depends=[lmomco]; };
 SPIAssay = derive { name="SPIAssay"; version="1.0.0"; sha256="1rwa2iicwdm7z8khlnly0ybrqiisw420anr2pcdd5chxa48h8apg"; depends=[]; };
 SPIn = derive { name="SPIn"; version="1.1"; sha256="109xxrg7bsmmfd6ik85kxrw2qclxbh5ipsh5mmrdl4hki3hnyp2s"; depends=[quadprog]; };
-SPMS = derive { name="SPMS"; version="2.0"; sha256="150kb4gjiksp3kc7p9j5zqc4955rq4fb27as71z89h23mkswz5r5"; depends=[Matrix]; };
 SPODT = derive { name="SPODT"; version="0.9-1"; sha256="01yq429a4s63855bwpn2mqjj2k3cz4187kfpi7n7qqdpdvmxz109"; depends=[rgdal sp tree]; };
 SPOT = derive { name="SPOT"; version="1.0.5543"; sha256="0y8rj0wxy8sdk7si9k11i4pb96vp1q78h48ihs4r7d383zykk827"; depends=[AlgDesign emoa MASS mco randomForest rgl rpart rsm twiddler]; };
 SPREDA = derive { name="SPREDA"; version="1.0"; sha256="1dyqsra899fd1nbk1b7vkw8gs455c6pbcvzw84q9iri77186xqhv"; depends=[nlme survival]; };
@@ -2004,14 +2000,15 @@ SPmlficmcm = derive { name="SPmlficmcm"; version="1.3"; sha256="0igybzc6fx6yd8xq
 SQDA = derive { name="SQDA"; version="1.0"; sha256="0nfimk625wb64010r5r7hzr64jfwgc6rbn13wvrpn0jgayji87h6"; depends=[limma mvtnorm PDSCE]; };
 SQN = derive { name="SQN"; version="1.0.5"; sha256="0kb8kf6g482zqdp4avwvhs3pqghfny757dbzfl1abaigmvwvx4qj"; depends=[mclust nor1mix]; };
 SQUAREM = derive { name="SQUAREM"; version="2014.8-1"; sha256="17fn37da4zslbfq5h4f3dfwyw1dxj5y2rgly3vjl2c4k5bnwxxqw"; depends=[]; };
-SRCS = derive { name="SRCS"; version="1.0"; sha256="0aha9fqdigvsx8dvck4y2yb8c7v58rivz50z0xwi0bhwzdddx52f"; depends=[]; };
+SRCS = derive { name="SRCS"; version="1.1"; sha256="13zf3cqs53w68f9zc1fkb9ql84rvzn7g1hbykqrbvss8hjaq8x1r"; depends=[]; };
 SRRS = derive { name="SRRS"; version="0.1.1"; sha256="0jv545a97q4pyl89lmhn3y0jhdzyq033mvx144x8lcgx59s7cyi3"; depends=[gtools tcltk2]; };
-SSDforR = derive { name="SSDforR"; version="1.4.9"; sha256="1ka6zy77ml4kccfqjszvijh9dvlhzcp7fhsd2zsirsn6sdz0wrp0"; depends=[MASS psych TSA TTR]; };
+SSDforR = derive { name="SSDforR"; version="1.4.10"; sha256="1i9k8ga1dkkds2bbczhsyxhlmq9pj1zbv6lwxchx5wrcbsq54yxi"; depends=[MASS psych TSA TTR]; };
 SSN = derive { name="SSN"; version="1.1.5"; sha256="1iymq6zzs3zfbjkz7h2ss8djdzvw2b3n68qazvw8vnrnkq3iyzry"; depends=[BH igraph lattice maptools MASS RSQLite sp]; };
 SSrat = derive { name="SSrat"; version="1.0"; sha256="1qpsdfdngsgxx3mqgn4avl65w4v5v4jwsh1nnxzfn9iqi9mg4bhi"; depends=[plyr sna]; };
 SSsimple = derive { name="SSsimple"; version="0.6.4"; sha256="0p7d4hx7mhn5myq8ajcij6hhg79rjxigk5v8z93yfdw4gjcb5wad"; depends=[mvtnorm]; };
 STAR = derive { name="STAR"; version="0.3-7"; sha256="1g78j4iyh78li1jaa3zz5qv4p41cg0imhmvbfakd34l32ppih4ll"; depends=[codetools gss mgcv R2HTML survival]; };
 STEPCAM = derive { name="STEPCAM"; version="1.0"; sha256="0lgikdj0mghz5hjm3rlrnnddjhvf9cmm0hwklbdyl3h816gq1jci"; depends=[FD gtools MASS vcd]; };
+STMedianPolish = derive { name="STMedianPolish"; version="0.1"; sha256="1mysmigksrgkgzz7cng5vn8i7q4marq144dpwww30lisw2jgraiq"; depends=[maptools reshape2 sp spacetime zoo]; };
 STPGA = derive { name="STPGA"; version="1.0"; sha256="1kqxzjrxf194n006dr3h5kprb4l7qy8bgm2n6251p0sswpvr70j1"; depends=[]; };
 SUE = derive { name="SUE"; version="1.0"; sha256="0akv724s84v2zixvwywj1ydfnfvcjnaabv6gm0601nsrh6ij1mi6"; depends=[]; };
 SVMMaj = derive { name="SVMMaj"; version="0.2-2"; sha256="01njc7drq01r3364081dv9gn37vrql52zbrb60gd559f3jshqx3m"; depends=[kernlab MASS]; };
@@ -2023,7 +2020,7 @@ Sabermetrics = derive { name="Sabermetrics"; version="1.0"; sha256="1x35h1ffy6jn
 Sample_Size = derive { name="Sample.Size"; version="1.0"; sha256="1vfnb2gg3rax4sxd81xqznfvh300nv45nn7zjsyrdjyg1n3ym7nw"; depends=[]; };
 SampleSizeMeans = derive { name="SampleSizeMeans"; version="1.1"; sha256="1wbc46n8b8wbcxl21blbzs5728dr8r0l8d3jpzbha8pcav0xrh1m"; depends=[]; };
 SampleSizeProportions = derive { name="SampleSizeProportions"; version="1.0"; sha256="0mvkvx3nni0l8ys68sq3h2zlbjvksdcdzxqlf03k0ca5bbcmdf9l"; depends=[]; };
-SamplerCompare = derive { name="SamplerCompare"; version="1.2.6"; sha256="1n94fp6frawlbxcnvi0v6lhgs3yyc47lj1r46y3jg6zb9z3va3fa"; depends=[mvtnorm]; };
+SamplerCompare = derive { name="SamplerCompare"; version="1.2.7"; sha256="149ipraps9dngmvpy5w5q9a1zgnwqblhawrk6184g52ij33jv4ji"; depends=[mvtnorm]; };
 SamplingStrata = derive { name="SamplingStrata"; version="1.0-3"; sha256="16nrcv5hbbvn4rgckzagi84i7h49bd878mnpknlzmzr5ykzywsay"; depends=[]; };
 Scale = derive { name="Scale"; version="1.0.4"; sha256="1fa3840kji34qpbw6mxfavk8wq0vq0vx2w6ya71idbkxnvwc3y06"; depends=[Hmisc MASS psych]; };
 SciViews = derive { name="SciViews"; version="0.9-5"; sha256="199waafpn0ndg7szwfhw2jlgcx1f0pv7j0vix2vzz60knwm698xb"; depends=[ellipse MASS]; };
@@ -2043,16 +2040,16 @@ SemiMarkov = derive { name="SemiMarkov"; version="1.4.1"; sha256="048hmbcmhqkvqw
 SemiPar = derive { name="SemiPar"; version="1.0-4.1"; sha256="05gnk4s0d6276rmnyyv6gy1wpkji3sw563n8l7hmi9qqa19ij22w"; depends=[cluster MASS nlme]; };
 SemiParBIVProbit = derive { name="SemiParBIVProbit"; version="3.4"; sha256="038k5vvgrk20n2cbji8qrp9nkg0ck5dcbxnd7wc5hy1l780g4k5g"; depends=[magic mgcv survey trust VGAM VineCopula]; };
 SemiParSampleSel = derive { name="SemiParSampleSel"; version="1.2"; sha256="1k9xmby8hy4k0qn7pjj0rypxj4iqb206ixv92bz7ga0q8zd0nxbr"; depends=[copula gamlss_dist magic Matrix mgcv mvtnorm trust VGAM]; };
-SenSrivastava = derive { name="SenSrivastava"; version="2012-04-0"; sha256="0ki0kl18cj8lkad6q48piyvslkirs8y5rnfa8bvgjxsisxg2ahhp"; depends=[]; };
+SenSrivastava = derive { name="SenSrivastava"; version="2015.6.25"; sha256="0r4p6wafnfww07kq19lfcs96ncfi0qrl8n9ncp441ri9ajwj54qk"; depends=[]; };
 SensitivityCaseControl = derive { name="SensitivityCaseControl"; version="2.1"; sha256="00jqzqx7g0av9lw13is723gph486gb8ga0wgcmmzpmb24s5nya9z"; depends=[]; };
 SensoMineR = derive { name="SensoMineR"; version="1.20"; sha256="1qw97cixndg2h29bbpssl0rqag3w8im4nm9964lr7r012y5wdqhx"; depends=[cluster FactoMineR KernSmooth]; };
 SensusR = derive { name="SensusR"; version="1.0"; sha256="1b5yrb3iiijr7x0r4ga5dlx6yqqk4bvmh1377655s6c7j36sn1xd"; depends=[jsonlite lubridate plyr rworldmap sp]; };
 SeqFeatR = derive { name="SeqFeatR"; version="0.1.7"; sha256="195pkpk9sh99v01mk827axsynwaccygx19i1x0h0ma7bsqlmw1qc"; depends=[ape Biostrings calibrate ggplot2 phangorn plotrix plyr qvalue tcltk2 widgetTools]; };
 SeqGrapheR = derive { name="SeqGrapheR"; version="0.4.8.3"; sha256="03plwa3sc1pg34p1szbz3d0z8y53w7iqm7qn9q6fj72rsnk5spxc"; depends=[Biostrings cairoDevice gWidgets gWidgetsRGtk2 igraph rggobi]; };
-Sequential = derive { name="Sequential"; version="2.0"; sha256="0dndy4a1waxgwj43gq1zb6cqwvrafcr729hhr7qckw5crcmm0iph"; depends=[]; };
+Sequential = derive { name="Sequential"; version="2.0.1"; sha256="11z7d02j97589s5csq5vzsfal3vip5klhm1q8h8pizqjv32i1lv5"; depends=[]; };
 SetMethods = derive { name="SetMethods"; version="1.0"; sha256="0zizvrzyk01w4ncazvifmjm4h5zrpsf6n68n11sc8f5kzny9ia48"; depends=[betareg lattice]; };
 ShapeSelectForest = derive { name="ShapeSelectForest"; version="1.0"; sha256="0jy40aql33xwl4s7y2s3wb6yig4vr6ly6fhz7hn2d59b8428p04q"; depends=[coneproj raster rgdal]; };
-SharpeR = derive { name="SharpeR"; version="0.1501"; sha256="138faypgrfph48wvz600l20ypqzxdir4q43bl9s7vndysya3vsnl"; depends=[matrixcalc]; };
+SharpeR = derive { name="SharpeR"; version="1.0.0"; sha256="107nk8ipqx4mzfhlv5b6k6vx60zi9rmvzk8qaxqic170p4ppcl2z"; depends=[matrixcalc sadists]; };
 ShrinkCovMat = derive { name="ShrinkCovMat"; version="1.1.0"; sha256="1v2rr97wz5521cjy41j5vdqq29xd7696pc1rzw4angsfjrq3fnh4"; depends=[]; };
 SiZer = derive { name="SiZer"; version="0.1-4"; sha256="0kiwvxrfa2b49r2iab5v2aysc2yzk5ck3h41f2hr0vq5pdnz0qy5"; depends=[boot]; };
 SightabilityModel = derive { name="SightabilityModel"; version="1.3"; sha256="0rgv5735y07yyv5y9c3flzha97ykn34ysmzy6as1z94hqfr4w746"; depends=[]; };
@@ -2080,7 +2077,8 @@ SnowballC = derive { name="SnowballC"; version="0.5.1"; sha256="0kbg33hy6m2hv9js
 SoDA = derive { name="SoDA"; version="1.0-6"; sha256="0sh2dan4ga2k14rirnkvgzsvbksx1k4ika5gkf5cy247rjkqnpj0"; depends=[]; };
 SocialMediaMineR = derive { name="SocialMediaMineR"; version="0.1"; sha256="113nyjncl5yi61hz8i7k60b3f0f9a5vyrd3s72nbmc44cnvr8fci"; depends=[httr jsonlite RCurl]; };
 SocialNetworks = derive { name="SocialNetworks"; version="1.1"; sha256="0d868xka6d35i17r28cvm0ya971xk6y1kycsfff0279w27cjd9x0"; depends=[Rcpp]; };
-SocialPosition = derive { name="SocialPosition"; version="1.0"; sha256="0aqx6raskybxwavl7366klhagclq0zlklr5sd0l9h6cz530h3azq"; depends=[]; };
+SocialPosition = derive { name="SocialPosition"; version="1.0.1"; sha256="1rrrjlq6czzhzipvkisbq024ca22v2vzx7wa4ddr9j7hnyyzzpic"; depends=[]; };
+Sofi = derive { name="Sofi"; version="0.0.26"; sha256="0jcnwy308h8qdswapdqpphdx5757a4a6bmrdmyzh0ny52a4w07n1"; depends=[foreign sampling shiny]; };
 SoftClustering = derive { name="SoftClustering"; version="1.1502"; sha256="1pgg9mjpfw55m3ny726vx5wl8gwsdkrxv8xzgmy3aqdlwzhh4bwz"; depends=[]; };
 SoilR = derive { name="SoilR"; version="1.1-23"; sha256="1cryypgnbck5hvkc2izrd8r10q2b97f2p1s46x4dk8p099gck5wg"; depends=[deSolve RUnit]; };
 SortableHTMLTables = derive { name="SortableHTMLTables"; version="0.1-3"; sha256="1jgrqsm0cj8qlk0s4qn3b83w96mgpp5gmhgcg9q2glc72v8c4ljh"; depends=[brew testthat]; };
@@ -2104,7 +2102,7 @@ SpherWave = derive { name="SpherWave"; version="1.2.2"; sha256="1wd9pql97m1zl0ax
 SphericalCubature = derive { name="SphericalCubature"; version="1.0.1"; sha256="0j592zvs07yc6amahlxgdw0k1vqr89gvcq22vcwzkx62igvlf6pv"; depends=[cubature]; };
 SphericalK = derive { name="SphericalK"; version="1.1"; sha256="18h1k0gy65jvzfpsda0ifv3nn3pvzx5ifllxbwh0my6w75c4biqn"; depends=[]; };
 SportsAnalytics = derive { name="SportsAnalytics"; version="0.2"; sha256="1vb080ak1mfvr6d0q9i3r8hd547ba80bavjdcri0gclqqcjf1ach"; depends=[]; };
-StAMPP = derive { name="StAMPP"; version="1.3"; sha256="1igf6arp7glihkv60zc7c0zwfqaf5kcm2d1xr856fj194zxww9ad"; depends=[adegenet doParallel foreach pegas]; };
+StAMPP = derive { name="StAMPP"; version="1.4"; sha256="0rmp5l50dkkldq9xc1abhdxjhbwlqk3i3g0d8w3xissidnz5n31b"; depends=[adegenet doParallel foreach pegas]; };
 StMoMo = derive { name="StMoMo"; version="0.2.0"; sha256="1pddlwf3kns9fzmqddfak6bir0mc1i4bv9cswj5pbhpavsd08r1c"; depends=[fanplot fields forecast gnm MASS reshape2 rootSolve]; };
 StMoSim = derive { name="StMoSim"; version="3.0"; sha256="18mdgpn0x6338zzvc7nwccz6ypqmlpv7pzcy5fwx5y2wfkmdp4rm"; depends=[Rcpp RcppParallel]; };
 StableEstim = derive { name="StableEstim"; version="2.0"; sha256="080khfix88j4656hmdy9l0xpbk9zzw7z7d7f6yvwsbalk3ag18i5"; depends=[fBasics MASS Matrix numDeriv stabledist testthat xtable]; };
@@ -2113,7 +2111,7 @@ StanHeaders = derive { name="StanHeaders"; version="2.6.0-10"; sha256="0bw11myc1
 StandardizeText = derive { name="StandardizeText"; version="1.0"; sha256="0s267k2b109pcdiyd26gm4ag5afikrnnb55d3cs6g2fvzp744hfp"; depends=[]; };
 Stat2Data = derive { name="Stat2Data"; version="1.6"; sha256="0pk68ffc6ffpddfpf9wi8ch39h6k3r80kldld3z5pnql18rc8nvx"; depends=[]; };
 StatDA = derive { name="StatDA"; version="1.6.9"; sha256="01bjygis14b3yfsfkjbvy0zlhjxysjf46cfcw8p4a4lwik3qp03b"; depends=[cluster e1071 geoR MASS MBA mgcv rgl robustbase sgeostat xtable]; };
-StatDataML = derive { name="StatDataML"; version="1.0-25"; sha256="05s9kbrjl2wsfccgav34b02m06q62r3iyjd0ndr6xcqlw9x2w2ya"; depends=[XML]; };
+StatDataML = derive { name="StatDataML"; version="1.0-26"; sha256="1lcckapbhqdbg6alnhm2yls66lnkxnxamdlzx6pbfqv1dhsy36gf"; depends=[XML]; };
 StatMatch = derive { name="StatMatch"; version="1.2.3"; sha256="10y9xaclxrw65v3k9qwdm7lvvf1kxpssc9nx0f15m8xkw5hhm7pa"; depends=[clue lpSolve proxy RANN survey]; };
 StatMeasures = derive { name="StatMeasures"; version="1.0"; sha256="1bnbz803xx8kqhy1cx545b35si6f10za0mp5z82qfvd4kv9a9izz"; depends=[data_table]; };
 StatMethRank = derive { name="StatMethRank"; version="1.0"; sha256="0mcvwn1f3hylvyg46vigc5wnvhhig5v01ag3y9rap32v85f308zh"; depends=[MASS pmr rjags]; };
@@ -2136,7 +2134,6 @@ SuppDists = derive { name="SuppDists"; version="1.1-9.1"; sha256="1jqsv1lzjblc7s
 Surrogate = derive { name="Surrogate"; version="0.1-61"; sha256="0jifjns0v22risy783a0s71v6sn165wn7w6a47sb7dsdimrvnn9d"; depends=[lattice latticeExtra lme4 MASS msm nlme rgl]; };
 SurvCorr = derive { name="SurvCorr"; version="1.0"; sha256="01rqdl503q1qnkn49iqnsjzis6azdsfi6s2hjky5k2zd6c9g18k5"; depends=[fields survival]; };
 SurvLong = derive { name="SurvLong"; version="1.0"; sha256="000ywg0sdk9kailiy7ckhq4mkaawl9hh88w6apj5khgpxsyj8aw3"; depends=[]; };
-SurvRegCensCov = derive { name="SurvRegCensCov"; version="1.3"; sha256="1sl17x984ww07aakz6dambn5kznw4hvj4b8ahy2r4mr6wf2dpg5a"; depends=[numDeriv survival]; };
 Survgini = derive { name="Survgini"; version="1.0"; sha256="1gxkdv2j1njbgnwb52vyhz7p2lrcg3hp6sry3kyhp4wkvf6gnhxi"; depends=[survival]; };
 SvyNom = derive { name="SvyNom"; version="1.1"; sha256="1jym2x6nd9a3y7nk5hflqpy54gs67y4sqqspkvkalf5l2cc64did"; depends=[Hmisc rms survey survival]; };
 SweaveListingUtils = derive { name="SweaveListingUtils"; version="0.6.2"; sha256="0n15gkiil9rlb0dhnkfimhcs09av35b7qx79iba7bx3y7spvzaqy"; depends=[startupmsg]; };
@@ -2145,7 +2142,7 @@ SyNet = derive { name="SyNet"; version="2.0"; sha256="0mb9dscddkvmkf7l3bbcy4dlfm
 SynchWave = derive { name="SynchWave"; version="1.1.1"; sha256="127hllvig8kcs9gr2q14crswzhacv6v2s4zrgj50qdyprj14is18"; depends=[fields]; };
 SynergizeR = derive { name="SynergizeR"; version="0.2"; sha256="0z32ylrjjvp8kr6lghhg57yq1laf9r0h8l3adysvis8bbpz2q2sj"; depends=[RCurl RJSONIO]; };
 Synth = derive { name="Synth"; version="1.1-5"; sha256="1cfvh91nz6skjk8jv04fhwv3ga9kcsfgq3mdy8lx75jkx16zr0pk"; depends=[kernlab optimx]; };
-TAM = derive { name="TAM"; version="1.7-1"; sha256="1zsgdilxh7j7ay74a5id7iwm0mz3vf1rcgw7fvclic1ndwwj68z3"; depends=[CDM GPArotation lattice lavaan MASS mirt msm mvtnorm plyr psych Rcpp RcppArmadillo sfsmisc tensor WrightMap]; };
+TAM = derive { name="TAM"; version="1.9-0"; sha256="0ysl77dk2fxzm5x7910sgpc9ajlijrlmja6sq8xac52qbmj9ggd9"; depends=[CDM GPArotation lattice lavaan MASS msm mvtnorm plyr psych Rcpp RcppArmadillo sfsmisc tensor WrightMap]; };
 TANOVA = derive { name="TANOVA"; version="1.0.0"; sha256="0c2mrahchwagisrkjl5l1s0mv0ny80kngq8dz0fjj9lwxwqwvwa5"; depends=[MASS]; };
 TAQMNGR = derive { name="TAQMNGR"; version="2015.2-1"; sha256="0j7qb15xy4g4ff0cmyjyz4lsalaxxf6zdwbq49j3y80ld0pvwhbk"; depends=[Rcpp]; };
 TBEST = derive { name="TBEST"; version="5.0"; sha256="15piy507vv8x59xgga17splxszy0vm87qjbfgxycvba633jishsa"; depends=[fdrtool signal]; };
@@ -2160,7 +2157,7 @@ TED = derive { name="TED"; version="1.1.1"; sha256="0nb2arx7c1m8ymnkmj3jwbcw23vh
 TEEReg = derive { name="TEEReg"; version="1.0"; sha256="1xpr4m8yamifjx7njb7dyqv51rsbjym9c5avflf69r9sazf3n503"; depends=[]; };
 TEQR = derive { name="TEQR"; version="5.0-0"; sha256="04r26qzps7nnvs4s2xpvjf6q456wa29alhsds07xvyqhi972xhs6"; depends=[]; };
 TERAplusB = derive { name="TERAplusB"; version="1.0"; sha256="0mshx615awcf2arm39mgw2gzgpyn7a3f767484g7z4nqqlikwpgc"; depends=[]; };
-TESS = derive { name="TESS"; version="1.2.1"; sha256="15wrbbhrzj66j0z6xhnbf560qg0dzm1yqfbpmx070n3lsa2rdyij"; depends=[ape coda deSolve]; };
+TESS = derive { name="TESS"; version="2.0.0"; sha256="0zsycanxp8fxy1kb9jj38si8w41iasvilbpy20smnnbq6dl46ci4"; depends=[ape coda deSolve Rcpp]; };
 TExPosition = derive { name="TExPosition"; version="2.6.10"; sha256="12rgijlclaipwjjiyng7nwilzixdy6lsvncigcg0vjydhgk97jn1"; depends=[ExPosition prettyGraphs]; };
 TFDEA = derive { name="TFDEA"; version="0.9.8.3"; sha256="0qg4nhlqqj7hc8lg732zz8klbbp3yksnq8q8n4ml3jz8gadrpyj7"; depends=[lpSolveAPI]; };
 TFMPvalue = derive { name="TFMPvalue"; version="0.0.5"; sha256="13bfcwfiyl61cv2ma23fcmv2cvbsyzdbg2pl6l6zg39l6scxf9na"; depends=[Rcpp]; };
@@ -2175,13 +2172,14 @@ TPmsm = derive { name="TPmsm"; version="1.2.0"; sha256="1670b9g6sqlg5xk76x77cph1
 TR8 = derive { name="TR8"; version="0.9.13"; sha256="07wrqwa5gf1l1y3b07mganr5xkzxdzrh6lrv7gf01m9b7bsz564m"; depends=[gdata gWidgets gWidgetstcltk plyr rappdirs RCurl taxize XML]; };
 TRAMPR = derive { name="TRAMPR"; version="1.0-7"; sha256="135ylhijhpdxpznfdbdzwfsvy8bhw1yx28c3520a3lyrqvinpawg"; depends=[]; };
 TRD = derive { name="TRD"; version="1.0"; sha256="1xj3ns9phiz4i70ky2p1q1cr3h6iq2i3dywnap6gqaq0fqmiq2fh"; depends=[Rlab]; };
-TROM = derive { name="TROM"; version="1.0"; sha256="1pr5n6bgjrn60f95395p2x8c2h1q3sx6a7448m0xi0a51wa016xp"; depends=[AnnotationDbi gplots gtools lattice openxlsx RColorBrewer topGO]; };
+TROM = derive { name="TROM"; version="1.1"; sha256="090m6l9x3q203mb6c454ign82zwcxk2appx0z3kr7bqrap245s7n"; depends=[AnnotationDbi gplots gtools lattice openxlsx RColorBrewer topGO]; };
 TRSbook = derive { name="TRSbook"; version="1.0.1"; sha256="1w2yl5pchw2vn9l3qnm1ra9mjy946i5xsxh5n5xdvrcj2kak50x5"; depends=[gdata IndependenceTests RColorBrewer xtable]; };
 TSA = derive { name="TSA"; version="1.01"; sha256="0cm97hwxm6vfgy9mc3kgwq6dnmn86p8a4avnfjbai048qnwrn6hx"; depends=[leaps locfit mgcv tseries]; };
 TSEN = derive { name="TSEN"; version="1.0"; sha256="1pn313g2ylbjc37rqcakd797vffnh7v0rgg1xl5wjyvcgmm5mxix"; depends=[ncdf]; };
 TSHRC = derive { name="TSHRC"; version="0.1-3"; sha256="18ygg7bqwg1pdqi52l1lf33gcd277895rlf5853yzh7ln2ivssmi"; depends=[]; };
+TSMining = derive { name="TSMining"; version="1.0"; sha256="1n32acagffiw31pr485ly3phx33zw7vj009bvw4lbqpixa1pszj2"; depends=[foreach ggplot2 plyr reshape2]; };
 TSMySQL = derive { name="TSMySQL"; version="2015.4-1"; sha256="1gdda7li320ba9qfxfl5c4cwl2ln5jdbvid98cryj175g0nbmx7b"; depends=[DBI RMySQL tframe TSdbi TSsql]; };
-TSP = derive { name="TSP"; version="1.1-1"; sha256="0wwzmkgfy55dba9jl3mpbyqciia71px0x0s6708k8kz9vr03m2zs"; depends=[foreach]; };
+TSP = derive { name="TSP"; version="1.1-2"; sha256="1y8vyc0lb5vlqs971zdkil6f78z13cpnzaxw9cqxn6j2a9ji7m0d"; depends=[foreach]; };
 TSPostgreSQL = derive { name="TSPostgreSQL"; version="2015.4-1"; sha256="11201zpbrva6gwc9hg8pynadrps6d8pb3syzba9nyjpv2ck6x3ry"; depends=[DBI RPostgreSQL tframe tframePlus TSdbi TSsql]; };
 TSPred = derive { name="TSPred"; version="2.0"; sha256="0p4msk12n8jc1ss8p7m15rxd0ip7v83c5p78v26nk5dz21a4xprp"; depends=[forecast]; };
 TSSQLite = derive { name="TSSQLite"; version="2015.4-1"; sha256="10z8s967wmapkb56hh2brb5bafgqr8flwh0sr72yqqv0ca2d06sc"; depends=[DBI RSQLite tframe tframePlus TSdbi TSsql]; };
@@ -2211,7 +2209,7 @@ TcGSA = derive { name="TcGSA"; version="0.9.8"; sha256="19gp3pj4p2svrfyviccvv13q
 TeachNet = derive { name="TeachNet"; version="0.7"; sha256="1p39bsf846r7zwz4lrrv2bpyx9yrkqzrnacajwrz3jjqj6qpp6cn"; depends=[]; };
 TeachingDemos = derive { name="TeachingDemos"; version="2.9"; sha256="160xch4812darv77qk2xjblm6nfnna5x2rxy335bwdsdjzcx4x9m"; depends=[]; };
 TeachingSampling = derive { name="TeachingSampling"; version="3.2.2"; sha256="07c1wx7hl246kvj9ah55kdjpag8a9zbzh3jy0680w5nnv8vzsxxs"; depends=[]; };
-TestScorer = derive { name="TestScorer"; version="1.7"; sha256="1rzpy4aa61l21qx2qxrmk16cxrvbygacxk4rkm766769aq2jqa09"; depends=[]; };
+TestScorer = derive { name="TestScorer"; version="1.7.1"; sha256="0zfabkgpwgrr41x033j065hdf1vc2sg4bj9yqfdc6g1pq9kxdmd4"; depends=[]; };
 TestSurvRec = derive { name="TestSurvRec"; version="1.2.1"; sha256="05f5gc8hvz09hx015jzis6ikki9c1brdq7l7a9bxm9bqbcc9f2f9"; depends=[boot survrec]; };
 Thermimage = derive { name="Thermimage"; version="1.0.1"; sha256="16wpmwqfqjghhp4g5wpmgzf0ii2aa0gawcq74rfn4frfizzdy0ad"; depends=[]; };
 Thinknum = derive { name="Thinknum"; version="1.3.0"; sha256="0j48vgr4wsc2chm95aprq0xm0dk720xk5zmiijxasg92sfp0va6n"; depends=[RCurl RJSONIO]; };
@@ -2230,6 +2228,7 @@ TopKLists = derive { name="TopKLists"; version="1.0.3"; sha256="0687nxsddmlgyz3k
 TraMineR = derive { name="TraMineR"; version="1.8-9"; sha256="0qawgjifz6w7gb06j9q5kbvhf8pn17922mvmgwzva5mykvqfmdic"; depends=[boot RColorBrewer]; };
 TraMineRextras = derive { name="TraMineRextras"; version="0.2.3"; sha256="0b6xh1xhmigjfj9cbk4gdpi1d131cq9ikwgdblcwwrmnrhcjgld6"; depends=[cluster combinat RColorBrewer survival TraMineR]; };
 TrackReconstruction = derive { name="TrackReconstruction"; version="1.1"; sha256="1f2l3nshb6qrhyczw5rxqqzmsjxf0rvv3y78j8d9lv1nnd9kxzq5"; depends=[fields RColorBrewer]; };
+Traitspace = derive { name="Traitspace"; version="1.0"; sha256="1pxyc5brlhsi0bhgr6nmd80kvrb032iwsshdqamicm48jyxn06xb"; depends=[mclust permute]; };
 TreatmentSelection = derive { name="TreatmentSelection"; version="1.1.2"; sha256="1mvrb72yz51gmwqlfg5gsjbi65lqk5j24agddw1br53ymdvjgzq4"; depends=[ggplot2]; };
 TreePar = derive { name="TreePar"; version="3.3"; sha256="1sm518b1b4b1p0n5979qzvi2nacxpp3znbg9n75pf2a8z8wy6p4l"; depends=[ape deSolve Matrix subplex TreeSim]; };
 TreeSim = derive { name="TreeSim"; version="2.1"; sha256="01izfzlvrak65mzwpz4bn5cansw10fvfjfvj164f5g0qghg9v84n"; depends=[ape geiger laser]; };
@@ -2264,14 +2263,16 @@ VGAM = derive { name="VGAM"; version="0.9-8"; sha256="0wizv2r1k79ifg9m0z9m2l80bs
 VGAMdata = derive { name="VGAMdata"; version="0.9-7"; sha256="0fkm90nbmj0gjzxmh54qbf90alcbaiz27rs0zc0i5jhh2cv716y6"; depends=[]; };
 VHDClassification = derive { name="VHDClassification"; version="0.3"; sha256="1ij4h3gzxb9mm9q743kc3sg2q609mnqz6mhlrbim1wcjji2b7bv4"; depends=[e1071 lattice]; };
 VIF = derive { name="VIF"; version="1.0"; sha256="0yvg6ikrcs7mhg0pavhcywrfysv7ylvnhxpc5sam86dbp69flx9x"; depends=[]; };
+VIFCP = derive { name="VIFCP"; version="1.1"; sha256="1xy9bsiz4ixsf7znlcaswcyryj8wf6r778wl11b1c33ip3ibq28x"; depends=[]; };
 VIGoR = derive { name="VIGoR"; version="1.0"; sha256="1c24s917aafqy46b3xlsw8v3afs11nd5bq83vlygpgnz1612jpga"; depends=[]; };
-VIM = derive { name="VIM"; version="4.1.0"; sha256="15nmywg8mhknvivg9bfszif2allim5vf1hjfbfyl053jphjpax26"; depends=[car colorspace data_table e1071 MASS nnet Rcpp robustbase sp vcd]; };
+VIM = derive { name="VIM"; version="4.3.0"; sha256="0gsafvrz5gbav7m728bxnjlyrg4kp418chsnpxpg4dvsgdjnw1fp"; depends=[car colorspace data_table e1071 MASS nnet Rcpp robustbase sp vcd]; };
 VIMGUI = derive { name="VIMGUI"; version="0.9.0"; sha256="195lakyik597sjkq6c5v3881p35111gzmj2r5f5nr53vi6bn4pzm"; depends=[Cairo foreign gWidgetsRGtk2 Hmisc RGtk2 survey tkrplot VIM]; };
 VLF = derive { name="VLF"; version="1.0"; sha256="1il8zhm80mc22zj16dpsy4s6s9arj21l9ik0vccyrpnlr8ws3d3l"; depends=[]; };
 VLMC = derive { name="VLMC"; version="1.4-1"; sha256="0y91cl9pv1d5s8956grdx3y4xa5l1fabrh1wl5hn11fjgyz1dcij"; depends=[MASS]; };
 VNM = derive { name="VNM"; version="4.0"; sha256="0dc2wvj8f09yrsf5lhg6djhfnkgslngs6a13g54d5q9aa4nnxm8w"; depends=[]; };
-VPdtw = derive { name="VPdtw"; version="2.1-10"; sha256="1sipiqbk766czd1jxam3bc2hfq7wsn72x51j5ssn2s2q0gvpl7m1"; depends=[]; };
+VPdtw = derive { name="VPdtw"; version="2.1-11"; sha256="0qsw5mqv36k8mcvwj1ka41z5kc05yn79wv41ai8f5412sbngihlr"; depends=[]; };
 VSURF = derive { name="VSURF"; version="1.0.0"; sha256="1hqn22k66v9zb2qr7sig0zgki9hbfr5442d7mlldnyj3m012m22j"; depends=[doParallel foreach randomForest rpart]; };
+VTrack = derive { name="VTrack"; version="1.11"; sha256="1w8zp7l60mwzppg3gqq0zv5a065y0vdrp2v0x0yl4a8jq0zlvppx"; depends=[doParallel foreach plotKML sp spacetime]; };
 VaRES = derive { name="VaRES"; version="1.0"; sha256="0gw05jiqgirhz3c8skbb07y4h44r6vi68gnd5y7ql455v0c2raza"; depends=[]; };
 VarSelLCM = derive { name="VarSelLCM"; version="1.2"; sha256="1pzcadzg1snv2nkdrbhgi6scrd70cawprncm8hs82gcl3r9dscic"; depends=[Rcpp RcppArmadillo]; };
 VarSwapPrice = derive { name="VarSwapPrice"; version="1.0"; sha256="12q2wp2cqi9q47mzbb7sc250zkjqkhs9z0h93ik0h63dv339abgj"; depends=[]; };
@@ -2288,7 +2289,7 @@ VizOR = derive { name="VizOR"; version="0.7-9"; sha256="1xw06y86nsrwpri6asrwh8kc
 Voss = derive { name="Voss"; version="0.1-4"; sha256="056izh1j26vqjhjh01fr7nwiz1l6vwr5z4fll87w99nc5wc4a467"; depends=[fields]; };
 VoxR = derive { name="VoxR"; version="0.5.1"; sha256="07lsp6lrkq0gv55m84dl9w7gz5246d9avypqnkz96n3rbbgd0w5z"; depends=[]; };
 W2CWM2C = derive { name="W2CWM2C"; version="1.0"; sha256="14q1y4vpmrx8qz5nav8bbjkxqsqk646zcwr8h7yzi7cfa85b4cxz"; depends=[wavemulcor waveslim]; };
-W3CMarkupValidator = derive { name="W3CMarkupValidator"; version="0.1-2"; sha256="162bjf8g94xxif86c6545kjvn2m06v618kna6ic2b3alyx577fww"; depends=[RCurl XML]; };
+W3CMarkupValidator = derive { name="W3CMarkupValidator"; version="0.1-4"; sha256="08697va5n59d7yyv882ya3s2qw94n7c53d8wyavpvhqq9d3n8nwi"; depends=[RCurl XML]; };
 WARN = derive { name="WARN"; version="1.1"; sha256="0rnzsc8vbm116g4cwdivmxqv1zyg4givjrrlahvbf4xl5pbryg6d"; depends=[MASS]; };
 WCE = derive { name="WCE"; version="1.0"; sha256="1kb1z67ymnz8cgwxq6m5fpqgxmmrfiwh2q3x4rhanac2sinagyn4"; depends=[plyr survival]; };
 WCQ = derive { name="WCQ"; version="0.2"; sha256="1yhkr2iazd7lh9r68xz1lh32z6r1sdnmqrjshcrm4rbwai0j3lkr"; depends=[]; };
@@ -2298,16 +2299,15 @@ WMCapacity = derive { name="WMCapacity"; version="0.9.6.6"; sha256="19x6l06srh59
 WMDB = derive { name="WMDB"; version="1.0"; sha256="10wdjy3g2qg975yf1dhy09w9b8rs3w6iszhbzqx9igfqvi8isrr1"; depends=[]; };
 WRS2 = derive { name="WRS2"; version="0.3-1"; sha256="11i9zv7p7808v3hvnhjn58yl7mwh26zhis6hh9n73dw3hn22xdng"; depends=[MASS plyr reshape]; };
 WWGbook = derive { name="WWGbook"; version="1.0.1"; sha256="0q8lnd1fp4rmz715x0lf61py3xw8wg55yq3gvswaqwy68dlqrzjc"; depends=[]; };
-WaterML = derive { name="WaterML"; version="1.0.0"; sha256="125aivc23qgarndbwxif3xmqjp4n32vyk8cb7f7a2v3y51z332j2"; depends=[httr RJSONIO XML]; };
-Watersheds = derive { name="Watersheds"; version="1.0"; sha256="11hrprl8ldbgk1j1f8z4cb327c8d94x1fc29dpacqck48gdb4wmp"; depends=[lattice maptools rgeos sp splancs]; };
+WaterML = derive { name="WaterML"; version="1.2.3"; sha256="0w9040acrvs2kqh4slkg4pcswzvsbbcpzr2cdvxzhjv6a0im7hyz"; depends=[httr RJSONIO XML]; };
 Wats = derive { name="Wats"; version="0.2-16"; sha256="1wbyyllmjsmh8wb8npzizlfn3hsvfpqp9p3b5wx3zpsavqw839wy"; depends=[colorspace ggplot2 lubridate plyr RColorBrewer testit zoo]; };
-WaveCD = derive { name="WaveCD"; version="1.0"; sha256="0gracn8lknw96nnir1m8fg5va3f45vvbiy69rxx8vibnfdg1q3l9"; depends=[lattice waveslim]; };
 WaveletComp = derive { name="WaveletComp"; version="1.0"; sha256="16ghxqjbv39pmgd52im6ilkkh0hpnaw8ns0hwkngpbr479m1grdp"; depends=[]; };
 WeightedCluster = derive { name="WeightedCluster"; version="1.2"; sha256="1d0df284fzfa34fi7b3d7f4zzm9ppyah46rj865446l5pjvl9np3"; depends=[cluster RColorBrewer TraMineR]; };
 WeightedPortTest = derive { name="WeightedPortTest"; version="1.0"; sha256="007v3w9ssiv2sds7sikpal27g6pxwxhs7bvcyw6kr0vg8gvlbi8h"; depends=[]; };
 WhatIf = derive { name="WhatIf"; version="1.5-6"; sha256="02lqvirnf24jn8b2s08z5fjmpilp2z08lww1s793n3pn783adbky"; depends=[lpSolve]; };
 WhiteStripe = derive { name="WhiteStripe"; version="1.1.1"; sha256="1naavgkvgky3lzg5vlz11g589cxr0fgiqz2waz86da1ksk4a19gw"; depends=[mgcv oro_nifti]; };
 WhopGenome = derive { name="WhopGenome"; version="0.9.2"; sha256="0nhl3qanwvyxvkrdc0wngzdx6id0yfzbf9wp170mcsyd4qh7pxzs"; depends=[]; };
+WiSEBoot = derive { name="WiSEBoot"; version="1.0.0"; sha256="1hfazm9zb2b6gzm38xlq672y1x1bqzj0mwvzinz6y65m9kb4l93g"; depends=[wavethresh]; };
 WideLM = derive { name="WideLM"; version="0.1-1"; sha256="0spxl960pgzh0cn1gkw2ayixpi982rr85qajcdqahmn9msk877h8"; depends=[Rcpp]; };
 WikidataR = derive { name="WikidataR"; version="1.0.0"; sha256="061745pz4j9gldbwy6pa5pbxmin84csqpv7r5r8lanvc0m7kgcgx"; depends=[httr jsonlite WikipediR]; };
 WikipediR = derive { name="WikipediR"; version="1.2.0"; sha256="1l9q9yg4z4j0lch9r8xr9q0f8mr0lpzf50ygmkkcvfd5sp7hirmi"; depends=[httr jsonlite]; };
@@ -2315,13 +2315,14 @@ WikipediaR = derive { name="WikipediaR"; version="1.0"; sha256="0kx966q5zn7jq1m7
 WilcoxCV = derive { name="WilcoxCV"; version="1.0-2"; sha256="1kbb7ikgnlxybmvqrbn4cd8xnqrkwipk4xd6yja1xsi39a109xzl"; depends=[]; };
 WordPools = derive { name="WordPools"; version="1.0-2"; sha256="1izs4cymf2xy1lax85rvsgsgi05ygf0ibi9gzxc96sbgvy4m78kf"; depends=[]; };
 WrightMap = derive { name="WrightMap"; version="1.1"; sha256="0dmximp549gr37ps56vz8mnlii7753dc5v0wl3s78cymjmnmyr0z"; depends=[]; };
-WriteXLS = derive { name="WriteXLS"; version="3.5.1"; sha256="0grhwwlibdpvzjlm1vc5ykl54jcz0jmg6rkhis00rjn5yqccx0in"; depends=[]; };
+WriteXLS = derive { name="WriteXLS"; version="3.6.1"; sha256="19rifwxfnmb65lf3a8nshyjnq3bn0lpkqfcwslfgjp6y8l7jx7gv"; depends=[]; };
 XBRL = derive { name="XBRL"; version="0.99.16"; sha256="1wrcm8srn185qrba7rig3fvwjz1n2ab296i0jr71vhyp9417h40q"; depends=[Rcpp]; };
 XHWE = derive { name="XHWE"; version="1.0"; sha256="1ca8y9q3623d0vn91g62nrqf3pkbcbkpclmddw5byd37sdrgsi5l"; depends=[]; };
 XLConnect = derive { name="XLConnect"; version="0.2-11"; sha256="02wxnr6h06h125dqszs8mzq4av842g445ndr59xgscxr03fyvi8p"; depends=[rJava XLConnectJars]; };
 XLConnectJars = derive { name="XLConnectJars"; version="0.2-9"; sha256="0js79297himq628cwx5cc3pcq3iv6p16bn4bpd5diyjaya4x27g3"; depends=[rJava]; };
-XML = derive { name="XML"; version="3.98-1.2"; sha256="13rhl534l0cnklxf6zb9y8ykg0k5idg9dxy0nv1vbliz6rw3dr00"; depends=[]; };
+XML = derive { name="XML"; version="3.98-1.3"; sha256="0j9ayp8a35g0227a4zd8nbmvnbfnj5w687jal6qvj4lbhi3va7sy"; depends=[]; };
 XML2R = derive { name="XML2R"; version="0.0.6"; sha256="0azfh950r2b7ck3n1vzk3mdll7zy844nx3mbk676jxnj8gg7nxk5"; depends=[plyr RCurl XML]; };
+XMRF = derive { name="XMRF"; version="1.0"; sha256="0jnyy9pcksfadznidqsbwh8nlqv3k0yppj76q8a2g0aidbdmg2cc"; depends=[glmnet igraph MASS Matrix snowfall]; };
 XNomial = derive { name="XNomial"; version="1.0.1"; sha256="134bwglqhgah7v3w6ir65dch2dwp5h4vldw521ba74l5v9b2j2h4"; depends=[]; };
 XiMpLe = derive { name="XiMpLe"; version="0.03-21"; sha256="1j387jzxh0z9dmhvc0kpjjjzf781sgrw57nwzdqwx6bn09bw509d"; depends=[]; };
 Xmisc = derive { name="Xmisc"; version="0.2.1"; sha256="11gwlcyxhz1p50m68cnqrxmisdk99v8vrsbvyr7k67f0kvsznzs1"; depends=[]; };
@@ -2339,23 +2340,24 @@ ZeligGAM = derive { name="ZeligGAM"; version="0.7-1"; sha256="1643ycx51mnlxwiarf
 ZeligMultilevel = derive { name="ZeligMultilevel"; version="0.7-1"; sha256="00zlambykds4z1c5kx3rpla1kllyp96cxwvbc5lalwdb9i48pp3s"; depends=[lme4 Zelig]; };
 aCRM = derive { name="aCRM"; version="0.1.1"; sha256="0kzp568hd9c9a9qgniia5s5gv0q5f89xfvvwpzb197gqhs3x092v"; depends=[ada dummies kernelFactory randomForest]; };
 aLFQ = derive { name="aLFQ"; version="1.3.2"; sha256="1963np2b2x7gbpgwcx0rqxd2psfdfmh72ap1y4p7f37ibjm8g45m"; depends=[caret data_table lattice plyr protiq randomForest reshape2 ROCR seqinr]; };
-aRpsDCA = derive { name="aRpsDCA"; version="1.0.0"; sha256="035888scbl5333sz25f9n6xh1zis7l2752p4nhsbs2g44q38l9h6"; depends=[]; };
+aRpsDCA = derive { name="aRpsDCA"; version="1.0.1"; sha256="1hxf3lpdcx8h9gndclppsxr8rs048mi3nysjj1z3fgbpmkqnlxgs"; depends=[]; };
 aRxiv = derive { name="aRxiv"; version="0.5.10"; sha256="1q8nblb0kfdidcj1nwxn0fap87wpkg49z0bgmwayskwv1p860wrh"; depends=[httr XML]; };
 aSPU = derive { name="aSPU"; version="1.35"; sha256="0wlp47wc75mmgh3986npqa72d4jia1jgalfvz7sq62wjsh1wkrbv"; depends=[]; };
+aTSA = derive { name="aTSA"; version="3.1.2"; sha256="1p3spas0sxj08hkb8p6k2fy64w86prlw1hbnrqnrklr0hnkg2g54"; depends=[]; };
 abbyyR = derive { name="abbyyR"; version="0.1"; sha256="03krflrjhq7yx06wacfyxzqvq0v2b17xvcyl8sfnaylrilracwjq"; depends=[httr XML]; };
 abc = derive { name="abc"; version="2.1"; sha256="0ngzaaz2y2s03fhngvwipmy4kq38xrmyddaz6a6l858rxvadrlhb"; depends=[abc_data locfit MASS nnet quantreg]; };
 abc_data = derive { name="abc.data"; version="1.0"; sha256="1bv1n68ah714ws58cf285n2s2v5vn7382lfjca4jxph57lyg8hmj"; depends=[]; };
 abcdeFBA = derive { name="abcdeFBA"; version="0.4"; sha256="1rxjripy8v6bxi25vdfjnbk24zkmf752qbl73cin6nvnqflwxkx4"; depends=[corrplot lattice rgl Rglpk]; };
 abctools = derive { name="abctools"; version="1.0.2"; sha256="1wdm42g2maab700fq2shpr1kajpj9m4c4z6k49gghrdzpk1kqxsa"; depends=[abc abind plyr]; };
-abd = derive { name="abd"; version="0.2-7"; sha256="0zkqwdcpz1v9k509vvzfbf9732v43q919hwd9yq3q0dg67d32ai7"; depends=[lattice mosaic nlme]; };
+abd = derive { name="abd"; version="0.2-8"; sha256="191gspqzdv573vaw624ri0f5cm6v4j524bjs74d4a1hn3kn6r9b7"; depends=[lattice mosaic nlme]; };
 abf2 = derive { name="abf2"; version="0.7-1"; sha256="0d65mc1w4pbiv7xaqzdlw1bfsxf25587rv597hh41vs0j0zlfpxx"; depends=[]; };
 abind = derive { name="abind"; version="1.4-3"; sha256="1km61qygl4g3f91ar15r55b13gl8dra387vhmq0igf0sij3mbhmn"; depends=[]; };
 abn = derive { name="abn"; version="0.85"; sha256="1ml4l4fiqscc1ikv0wsi73rymb9599mpnhmzlfnvv4zp3fkfm6qm"; depends=[Cairo]; };
 abundant = derive { name="abundant"; version="1.0"; sha256="0n2yvq057vq5idi7mynnp15cbsijyyipgbl4p7rqfbbgpk5hy3qb"; depends=[QUIC]; };
-acc = derive { name="acc"; version="1.0.2"; sha256="1z7hncgd43mc84v3wdcqpkp3gxsdyvh7h8s6qvgap2lp04m1j74l"; depends=[mhsmm PhysicalActivity timeDate zoo]; };
+acc = derive { name="acc"; version="1.1.1"; sha256="0q4xq5mmcwb9b86k22c1x7zl4zxqacl62w7mcqrdb03v9xmjn4h4"; depends=[mhsmm PhysicalActivity timeDate zoo]; };
 accelerometry = derive { name="accelerometry"; version="2.2.5"; sha256="00mn09j7y39sc7h5srnnfk2l73vhh6zq7rzc0vckfvs72lncmwv5"; depends=[Rcpp]; };
 accrual = derive { name="accrual"; version="1.1"; sha256="12zlv34pgmhcvisqk3x09hjpmfj91pn56pkjyj483mcf634m9ha4"; depends=[fgui SMPracticals]; };
-accrued = derive { name="accrued"; version="1.2"; sha256="0xkar6kpxf7sq36xqf6cvns2sp5qgqxqjb8hindp59gvlcd2r5a7"; depends=[]; };
+accrued = derive { name="accrued"; version="1.3"; sha256="091abkq7jwlw1gj0691qsv7ikgmn471hnkaadb8v0kxhs44mfq52"; depends=[]; };
 acepack = derive { name="acepack"; version="1.3-3.3"; sha256="13ry3vyys12iplb14jfhmkrl9g5fxg3iijiggq4s4zb5m5436b1y"; depends=[]; };
 acid = derive { name="acid"; version="1.0"; sha256="0m59xnz6435n7j3fggv274g5rap7cpr0zby3aqbaycfdfrp78d1h"; depends=[gamlss gamlss_dist Hmisc]; };
 acm4r = derive { name="acm4r"; version="1.0"; sha256="1wqzc35i1rshx0zlmas8y4qkkvy6h9r4i4apscjjv1xg2wjflzxa"; depends=[MASS]; };
@@ -2366,7 +2368,7 @@ acs = derive { name="acs"; version="1.2"; sha256="1vw4ghqcz53m3qy7hy2j7nrdinbbqj
 acss = derive { name="acss"; version="0.2-5"; sha256="0cqa60544f58l5qd7h6xmsir40b9hqnq6pqgd5hfx2j2l5n7qhmk"; depends=[acss_data zoo]; };
 acss_data = derive { name="acss.data"; version="1.0"; sha256="09kl4179ipr8bq19g89xcdi1xxs397zcx5cvgp6viy8gn687ilgv"; depends=[]; };
 activity = derive { name="activity"; version="1.0"; sha256="1y1vy3kj9n21jvbyl3s5hllfkqp3z1rnn7701c5jxhay5dbdz3p2"; depends=[circular overlap pbapply]; };
-actuar = derive { name="actuar"; version="1.1-8"; sha256="0zdw8dphpp49hr82z44az10vyawj301p8lr0cc7dk96g7xrzmlwa"; depends=[]; };
+actuar = derive { name="actuar"; version="1.1-9"; sha256="00b0gpbvm0aivcjvk91rk3c28fzd3ir8h42b1kpnrgdjrc198im4"; depends=[]; };
 ada = derive { name="ada"; version="2.0-3"; sha256="1c0nj9k628bcl4r8j0rmyp5f1igdjq6qhjxyif6575fvn2gdzmbw"; depends=[rpart]; };
 adabag = derive { name="adabag"; version="4.0"; sha256="0n4zls13f46rxqrx9qkvrifshb3cl8l6ni7zw36pm6fixbz844fk"; depends=[caret mlbench rpart]; };
 adagio = derive { name="adagio"; version="0.5.9"; sha256="1yp9w557advb7dzrdqwkffpdmhn6mk4879lrrjd0d6kv89fwz5yr"; depends=[]; };
@@ -2379,8 +2381,8 @@ additivityTests = derive { name="additivityTests"; version="1.1-4"; sha256="048d
 addreg = derive { name="addreg"; version="2.0"; sha256="1lc8p70di466i061jrbahq4hir4g5a8rns6044jjjg8v7b1y8alc"; depends=[combinat glm2]; };
 ade4 = derive { name="ade4"; version="1.7-2"; sha256="01pchn70jpz8v9l86ng34a2vgn3pv4v5iwxz5n39f685p9lkc2nn"; depends=[]; };
 ade4TkGUI = derive { name="ade4TkGUI"; version="0.2-6"; sha256="010ggsxcmljh0cdba4lcfnsd9r49pwqs6kbw88syfn2qv65hh5kq"; depends=[ade4]; };
-adegenet = derive { name="adegenet"; version="1.4-2"; sha256="13fglxy40rnwi5hsmmvwlfcvfn8dybxyy3k5qhpml8jgpbl3fsdb"; depends=[ade4 ape ggplot2 igraph MASS shiny]; };
-adegraphics = derive { name="adegraphics"; version="1.0-2"; sha256="1jhi761rhrq1k27gxfns46j67x0ajbff6mz9cwl5jkcqg2mbcg8q"; depends=[ade4 KernSmooth lattice RColorBrewer sp]; };
+adegenet = derive { name="adegenet"; version="2.0.0"; sha256="10y4l06k2g42s4vf394dx7pdsqsl0ff2w58mzap1khj90pxyrxdz"; depends=[ade4 ape boot dplyr ggplot2 igraph MASS reshape2 seqinr shiny spdep]; };
+adegraphics = derive { name="adegraphics"; version="1.0-3"; sha256="0i1qln99vdfnxjsbfq80c1c7allsw8ras7hlx7vr0dkdzcp1wy6z"; depends=[ade4 KernSmooth lattice RColorBrewer sp]; };
 adehabitat = derive { name="adehabitat"; version="1.8.17"; sha256="0cy98fd6mcbjc152vv41mnh5xj19xdfag8n950fvffbrpvpgbcpb"; depends=[ade4 shapefiles sp tkrplot]; };
 adehabitatHR = derive { name="adehabitatHR"; version="0.4.13"; sha256="140ar1naf67v996d5p0i2v07g02pf9c4c6h1pjicai5n59s7z72v"; depends=[ade4 adehabitatLT adehabitatMA deldir sp]; };
 adehabitatHS = derive { name="adehabitatHS"; version="0.3.11"; sha256="0sbhc1mvdc8pxq56plbgk0ry65chxcv3zjry4151hiv7yxpn39ri"; depends=[ade4 adehabitatHR adehabitatMA sp]; };
@@ -2391,14 +2393,14 @@ adhoc = derive { name="adhoc"; version="1.0"; sha256="193adddarjkc2kk1xncfkm919s
 adimpro = derive { name="adimpro"; version="0.7.8"; sha256="06zwdgl7g4azg2mn7p35may8hsjcvf2dz7dj86zqngjspda123s4"; depends=[]; };
 adlift = derive { name="adlift"; version="1.3-2"; sha256="0nzg16vhm5qg3xzczi3f6cynvp9ym2jsfrc4fdyxq7bwp9kry2i4"; depends=[EbayesThresh]; };
 ads = derive { name="ads"; version="1.5-2.2"; sha256="17k24dihl41jgkkglhnkj7lvvl53dgahjkb5jhfmfgk6i16c7s23"; depends=[ade4 spatstat]; };
-adwave = derive { name="adwave"; version="1.0"; sha256="10cz870n3az7brmf2658g0jrc1x39c69vw37n99m8x6wxxp6ypn8"; depends=[waveslim]; };
+adwave = derive { name="adwave"; version="1.1"; sha256="0kkwgcyxddzmrb8h1w1f4xy2cq40b86q0lxwfdhx25z3zjc4m1ni"; depends=[waveslim]; };
 aemo = derive { name="aemo"; version="0.1.0"; sha256="1iik0rrqkkx9n1qb1pvq5iwxqmvs6vnx8z80hdzb5vqq0lvi1bsx"; depends=[assertthat dplyr lubridate stringr]; };
 afex = derive { name="afex"; version="0.13-145"; sha256="0wyjgxh1rdibj21f8dbwg7f30q1z6jwwpj2dcjx2rh60axvp1dir"; depends=[car coin lme4 Matrix pbkrtest reshape2 stringr]; };
 aftgee = derive { name="aftgee"; version="1.0-0"; sha256="0gfp05r6xvn9fcysbqyzkz916axpsc2d3lb5wmb1v92z1zw3037b"; depends=[BB geepack MASS survival]; };
 agRee = derive { name="agRee"; version="0.3-1"; sha256="1gqbhv44z1r9m54fmrg0frnzsgsp13v5ppmzpv28frz9d8x7sxx6"; depends=[lme4 miscF R2jags]; };
 agop = derive { name="agop"; version="0.1-4"; sha256="1jwyl02z053rsdw9hryv1nyj9wlq310l51fghp1p0j51c159mlpx"; depends=[igraph Matrix]; };
 agricolae = derive { name="agricolae"; version="1.2-1"; sha256="1vrc1bjqcp3xk8q41bl3kvjvaj58gw19dv7vwsxn9r6r99hlb3j1"; depends=[cluster klaR MASS nlme spdep]; };
-agridat = derive { name="agridat"; version="1.11"; sha256="1bnkzacwp22dw5vppm4yz583h1dw5d93dlca9i3ba2y9dzsalx0d"; depends=[lattice reshape2]; };
+agridat = derive { name="agridat"; version="1.12"; sha256="1b3dgrp6mkfpfaywqdm22sakadhnl1vlyj1n3rq6bc2f0gf8kcrw"; depends=[lattice reshape2]; };
 agrmt = derive { name="agrmt"; version="1.39"; sha256="0qkl8wikvg635mr8v3n9svdicnb8sl4brrh7px1n5jy71h7cswd7"; depends=[]; };
 agsemisc = derive { name="agsemisc"; version="1.3-1"; sha256="1905q35jgjhghlawql43yh296kbpysp927x3hj750yshz5zayzyr"; depends=[lattice MASS]; };
 ahaz = derive { name="ahaz"; version="1.14"; sha256="1z7w5rxd5cya7kxhgxqvn72k87y33ginxra9g7j9wrfs5jgx6kvx"; depends=[Matrix survival]; };
@@ -2409,19 +2411,19 @@ alabama = derive { name="alabama"; version="2015.3-1"; sha256="0mlgk929gdismikwx
 ald = derive { name="ald"; version="1.0"; sha256="1vphmqhx6wlzsz3s94jsa4mk6wpacp93wfgpj0vp9ljfb3aplhik"; depends=[]; };
 algstat = derive { name="algstat"; version="0.0.2"; sha256="1ssdrrwnxrhx3syndqxqcaldlbnjamk3x2yiq7jgxy0qsiadmqsi"; depends=[mpoly Rcpp reshape2 stringr]; };
 allan = derive { name="allan"; version="1.01"; sha256="02bv9d5ywbq67achfjifb3i7iiaaxa8r9x3qvpri2jl1cxnlf27m"; depends=[biglm]; };
-allanvar = derive { name="allanvar"; version="1.0"; sha256="0wpywdr15gb49m9kxrpjfsxlxrm4hwm46x42k8dgc6sihfsqbm22"; depends=[gplots]; };
+allanvar = derive { name="allanvar"; version="1.1"; sha256="142wy1mf4jbp4hy756rz95w24f4j1dgf14f1n5sd09dg4w98j7xg"; depends=[gplots]; };
 alleHap = derive { name="alleHap"; version="0.7.2"; sha256="1x10grrv732a0iidr2c96vbl46553njhvvlq249jxn3y11lfq2gv"; depends=[gtools]; };
 allelematch = derive { name="allelematch"; version="2.5"; sha256="1kws6y3igq6l85cfjrck2dzcfpgr56ridbc6w071h8kjw19mlzas"; depends=[dynamicTreeCut]; };
 allelic = derive { name="allelic"; version="0.1"; sha256="0xs4kd3vqb5ph8kqc3lcqgirrdkz8b627pvnczvci2g0sr3cl18j"; depends=[]; };
 alm = derive { name="alm"; version="0.4.0"; sha256="125cl5b1sps33ipsh2pygrw79mhin1qj374lq56ny7c9rp4n9w7p"; depends=[ggplot2 httr jsonlite lubridate plyr reshape reshape2 stringr]; };
-alphaOutlier = derive { name="alphaOutlier"; version="1.0.1"; sha256="1zl80q08vcyvyakfv6cd444m6l5z14p7bv9jf8kpg4dad3d63mhz"; depends=[nleqslv quantreg Rsolnp]; };
+alphaOutlier = derive { name="alphaOutlier"; version="1.1.0"; sha256="0agca8dbypp2r08x7b4pscyz280m4l27ckkcvg1plk412v0n8dq8"; depends=[nleqslv quantreg Rsolnp]; };
 alphahull = derive { name="alphahull"; version="2.0"; sha256="1z8kbh3y5clh3hn018g0fci2psd0l36nz4a08pgg7md2bbhripbl"; depends=[ggplot2 sgeostat spatstat splancs tripack]; };
 alphashape3d = derive { name="alphashape3d"; version="1.1"; sha256="1hfxvzqgirc587vxyggxdqii90nvypzi3wddvd2zdw2h95v9kfyg"; depends=[geometry rgl]; };
 alr3 = derive { name="alr3"; version="2.0.5"; sha256="0zrrsv2kjq3cky3bhk6gp32p1qpr1i5k2lx7c1w08bql0nb1x740"; depends=[car]; };
 alr4 = derive { name="alr4"; version="1.0.5"; sha256="0m8jgc4mfni17psf8m0avf0m364vcq5k3c9x807p98ch2z5nsygv"; depends=[car effects]; };
 amap = derive { name="amap"; version="0.8-14"; sha256="1dz37z9v4zvyvqrs4xvpfv468jwvpxav60qn2w0049bw8llj6xdl"; depends=[]; };
 amei = derive { name="amei"; version="1.0-7"; sha256="0dyx6a1y5i0abwka0y89d0mpj55rm5ywb4r9c2mqmy43djp181hn"; depends=[]; };
-amen = derive { name="amen"; version="1.0"; sha256="17kaknfgi39qcg5mhkdyf6cn2l3nn9n2xzvyz1c4piy6inhmj36c"; depends=[]; };
+amen = derive { name="amen"; version="1.1"; sha256="084bl46sxn2sxslcpi9lm22k6x8cz1jld228l0iardy4vmh4cxdk"; depends=[]; };
 aml = derive { name="aml"; version="0.1-1"; sha256="09xxlxp784wlb561apns3j8f2h9pfk497cy5pk8wr4hhqqv4d3al"; depends=[lars]; };
 anacor = derive { name="anacor"; version="1.0-5"; sha256="1m2r5x5spb5nahd9cvnsxwqi0ay2kasmha21rbwj3r99jz1vxkql"; depends=[car colorspace fda rgl scatterplot3d]; };
 analogue = derive { name="analogue"; version="0.16-3"; sha256="0lv8ljf10jdrgrd59pcjdi1wvjfd0j6qb87xzfx5k8kcp9awx4h6"; depends=[brglm lattice MASS mgcv princurve vegan]; };
@@ -2465,7 +2467,7 @@ aqr = derive { name="aqr"; version="0.4"; sha256="04frgil3nbxsww66r9x0c6f308pzqr
 archdata = derive { name="archdata"; version="0.1"; sha256="1k7cpqwgvkwfz25a9db0c8g6ii6xsbhkj3c9alghhaafs7x8n47w"; depends=[]; };
 archetypes = derive { name="archetypes"; version="2.2-0"; sha256="1djzlnl1pjb0ndgpfj905kf9kpgf9yizrcvh4i1p6f043qiy0axf"; depends=[modeltools nnls]; };
 archiDART = derive { name="archiDART"; version="1.1"; sha256="1md8y3nq575y9v4gj963y92as54h6bzaysnmjirk634rravps9ja"; depends=[XML]; };
-archivist = derive { name="archivist"; version="1.3"; sha256="1did4s9afmbd4b2xcs674fyk2vz0r08vchjfar1q3ri2mfq4p7x5"; depends=[DBI digest httr lubridate RCurl RSQLite shiny]; };
+archivist = derive { name="archivist"; version="1.5"; sha256="0mcb35bllg82w0373prcai8h58gd6aj1pil90ni81zp7p1pdmcw3"; depends=[DBI digest httr lubridate RCurl RSQLite shiny]; };
 arf3DS4 = derive { name="arf3DS4"; version="2.5-10"; sha256="12cbrk57c9m7fj1x7nfmcj1vp28wj0wymsjdz8ylxhm3jblbgmxc"; depends=[corpcor]; };
 arfima = derive { name="arfima"; version="1.2-7"; sha256="00mc50hssnv7qj6dn1l3jgx8ca4vjkqirc38rv538xwjgw9mm1ms"; depends=[ltsa]; };
 argosfilter = derive { name="argosfilter"; version="0.63"; sha256="0rrc2f28hla0azw90a5gk3zj72vxhm1b6yy8ani7r78yyfhgm9ig"; depends=[]; };
@@ -2480,42 +2482,42 @@ aroma_core = derive { name="aroma.core"; version="2.13.1"; sha256="1085qh092sij4
 arqas = derive { name="arqas"; version="1.1"; sha256="1vdx9nfqkdrn6s4h90spb0g5vk7qxm5rg3mr2jkk4n67x7s5cv3x"; depends=[distr doParallel fitdistrplus foreach ggplot2 gridExtra iterators reshape]; };
 arrayhelpers = derive { name="arrayhelpers"; version="0.76-20120816"; sha256="1q80dykcbqbcigv2f9xg1brfm3835i0zvs0810q6kh682a3hpqbi"; depends=[]; };
 ars = derive { name="ars"; version="0.5"; sha256="0m63ljb6b97kmsnmh2z5phmh24d60iddgz46i6ic4rirshq7cpaz"; depends=[]; };
-arules = derive { name="arules"; version="1.1-6"; sha256="0xq0j4phwqw9cx2yzxx8xx4srnjjlv75cd463x959bycsp6fzb5r"; depends=[Matrix]; };
-arulesNBMiner = derive { name="arulesNBMiner"; version="0.1-4"; sha256="05vj7pzzh84xr6d0m16dhzr7bw50hkiyq99vl46zinak648my338"; depends=[arules rJava]; };
+arules = derive { name="arules"; version="1.1-7"; sha256="19wb85swasa3n2wg1bl6aww56294f2icqcmj0x2kjncin964blg2"; depends=[Matrix]; };
+arulesNBMiner = derive { name="arulesNBMiner"; version="0.1-5"; sha256="1q4sx6c9637kc927d0ylmrh29cmn4mv5jxxpl09yaclzfihjlk9a"; depends=[arules rJava]; };
 arulesSequences = derive { name="arulesSequences"; version="0.2-6"; sha256="1fvph6c8dy3hj0h63h85bzzzka8dx0cc0lcncz9svyahy1j4q3z0"; depends=[arules]; };
-arulesViz = derive { name="arulesViz"; version="1.0-0"; sha256="0g4bqfn8jya992r2wbi044v68mj508h52snrdcd5ijhdhw8xq9xc"; depends=[arules igraph scatterplot3d seriation vcd]; };
+arulesViz = derive { name="arulesViz"; version="1.0-2"; sha256="1lss9xlbdxpcqphczk0i0kib1px30jf2hcygrkhxk8aajnni9ar6"; depends=[arules igraph scatterplot3d seriation vcd]; };
 asVPC = derive { name="asVPC"; version="1.0.2"; sha256="07nfwr0lsfpwgfdgzcdn1svw8dnjfni5ga9q77yjd1bj0wf76ci2"; depends=[ggplot2 plyr]; };
 asbio = derive { name="asbio"; version="1.1-5"; sha256="1br9rhj6nghwx54i2hpjrsdhwg8v38s66cy8fc4pg97zypdnikpj"; depends=[deSolve lattice multcompView mvtnorm pixmap plotrix scatterplot3d tkrplot]; };
 ascii = derive { name="ascii"; version="2.1"; sha256="19dfbp7k4bjxjn8wdzhbmz7g3za6gn8vcnd5qkm4dz7gg1fg7b8p"; depends=[]; };
-ascrda = derive { name="ascrda"; version="1.15"; sha256="17anzlhcjmrk13s5gs752rsc735y5wvba6r3w1nbv0cnkpnyk8i7"; depends=[class e1071 MASS nnet pamr rda sfsmisc]; };
 asd = derive { name="asd"; version="2.0"; sha256="1nnsbh6g0bhvhp6644zf2l6frr3qnls0s7y7r0g211b5zagq20z3"; depends=[mvtnorm]; };
 ash = derive { name="ash"; version="1.0-14"; sha256="15x16ld25i160asqf4z4difa6zn2yfgl04j8y8nqb0djymdx7a1f"; depends=[]; };
 aspace = derive { name="aspace"; version="3.2"; sha256="1g51mrzb6amafky2kg2mx63g6n327f505ndhna6s488xlsr1sl49"; depends=[Hmisc shapefiles splancs]; };
 aspect = derive { name="aspect"; version="1.0-3"; sha256="12wyyr0ms8g3y96jz1x0y52dlma00j20h7hmm8m6y5p1lgk9kmcd"; depends=[]; };
-asremlPlus = derive { name="asremlPlus"; version="1.10-16"; sha256="17k1syfdsg097pawldw5mgy3a325p8k7xk99qpcivcl3pzsmw79q"; depends=[dae ggplot2]; };
-assertive = derive { name="assertive"; version="0.2-4"; sha256="0xc561fi322qd5z7ss2zi69nl3i8i56w8bksgd38fpjigg0x9fwl"; depends=[knitr]; };
-assertr = derive { name="assertr"; version="0.4.1"; sha256="1h77iisvyakccm7v1iqva04s1hn197sjcy28832cagqg89qlsg31"; depends=[dplyr]; };
+asremlPlus = derive { name="asremlPlus"; version="2.0-0"; sha256="1iag76aldb84zwfvy9m3p66ypmc8bz1b3c9yzkf9clk8rlzn53zv"; depends=[dae ggplot2]; };
+assertive = derive { name="assertive"; version="0.2-6"; sha256="1iracxm6af1lbd39zrnjziz31lvwgxi8rry82x8sjlab5l0w6lh9"; depends=[knitr]; };
+assertr = derive { name="assertr"; version="1.0.0"; sha256="0z7cgksjc0a7niar9f26f0512ln0a7cifyqcfrbhar552dnkg33i"; depends=[dplyr lazyeval MASS]; };
 assertthat = derive { name="assertthat"; version="0.1"; sha256="0dwsqajyglfscqilj843qfqn1ndbqpswa7b4l1d633qjk9d68qqk"; depends=[]; };
 assist = derive { name="assist"; version="3.1.3"; sha256="0ngnn75iid5r014fcly29zhcfpqkqq24znncc3jdanbhdmfyybyz"; depends=[lattice nlme]; };
 aster = derive { name="aster"; version="0.8-30"; sha256="0vdlimkkmd9ar5v3xrbi9gshvj980l7641brd7cqs78sqf0v71fn"; depends=[trust]; };
 aster2 = derive { name="aster2"; version="0.2-1"; sha256="1gr9hx0mhyan0jy7wsl4ccsx9ahlvhfiq0j1xnffa4m3hzazisn5"; depends=[]; };
 astro = derive { name="astro"; version="1.2"; sha256="1c7zrycgj2n8gz50m94ys1dspilds91s1b2pwaq6df1va17pznby"; depends=[MASS plotrix]; };
 astroFns = derive { name="astroFns"; version="4.1-0"; sha256="0g5q0y067xf1ah91b4lg8mr9imj0d6lgig7gbj3b69fn335k363g"; depends=[]; };
-astrochron = derive { name="astrochron"; version="0.4.2"; sha256="1wrpcngny2b4k0p3xagh5967yvvgxcsp87xcdp4raf4n1v3nk2xx"; depends=[fields IDPmisc multitaper]; };
+astrochron = derive { name="astrochron"; version="0.4.3"; sha256="09c0mhf7an5i0c7v94w2jav13ljbc9d1czn8qwcjmhqgnz54cniz"; depends=[fields IDPmisc multitaper]; };
 astrodatR = derive { name="astrodatR"; version="0.1"; sha256="00689px4znwmlp6qbj6z2a51b7ylx1yrrjpv6zjkvrwpv6lyj9fw"; depends=[]; };
 astrolibR = derive { name="astrolibR"; version="0.1"; sha256="0gkgry5aiz29grp9vdq9zgg6ss47ql08nwcmz1pfvd0g0h9h75l8"; depends=[]; };
 astsa = derive { name="astsa"; version="1.3"; sha256="01bslr6hww029097244r5l4bz4v7z46gpihw39har8h0xicl6ywk"; depends=[]; };
 asympTest = derive { name="asympTest"; version="0.1.3"; sha256="11nlkgws3y8xbz3yli55414a2rkk7367q9q5r2ssa61jaiimibhh"; depends=[]; };
-asypow = derive { name="asypow"; version="2013.9-1"; sha256="0zd42ha30kysjhd6rwxr91k1hhsimw3py2inymbpxgyq4s890whs"; depends=[]; };
+asypow = derive { name="asypow"; version="2015.6.25"; sha256="0il38djkmw5ka7czpalmhq6yycx7flpdpgbd7p5nx52rsjdv49mj"; depends=[]; };
 atmcmc = derive { name="atmcmc"; version="1.0"; sha256="05k69b5wlysz3kh0yiqvshgvr0nyz34zkvn6bjs30cwz7s9j21pn"; depends=[]; };
 atsd = derive { name="atsd"; version="1.0.8441"; sha256="1jz2bdgvk1wamrm8r9ygprhyf0z3mdk9c1pwlb4bfmwvbnqd0yqa"; depends=[httr RCurl]; };
 attribrisk = derive { name="attribrisk"; version="0.1"; sha256="1zqx53mxz2hh9jyanf3jkadgpj44jbqrk4p13fas91zvhpw9pn5s"; depends=[boot survival]; };
 audio = derive { name="audio"; version="0.1-5"; sha256="1hv4052n2r6jkzkilhkfsk4dj1xhbgk4bhba2ca9nf8ag92jkqml"; depends=[]; };
 audiolyzR = derive { name="audiolyzR"; version="0.4-9"; sha256="09jsrjy15vcn6da0kgk06ghayyrf3s853gqv8qdawg745ky2hbgi"; depends=[hexbin plotrix RJSONIO]; };
 audit = derive { name="audit"; version="0.1-1"; sha256="0hrcdcwda5c0snskrychiyfjcbnymkcl2x43bapb6inw9y8989qv"; depends=[]; };
-autoencoder = derive { name="autoencoder"; version="1.0"; sha256="18i6b2vjhlq9f82syw3k88gm9bvklv827nflgzq0xzjnzh6z5nr8"; depends=[]; };
+autoencoder = derive { name="autoencoder"; version="1.1"; sha256="0ly1aanayk28nx6yqfhl7d0zm4vg6rfjikf5ibn8zhmkrfyflj1y"; depends=[]; };
 automap = derive { name="automap"; version="1.0-14"; sha256="1190kbmp0x80x0hyifdbblb4ijq79kvrfn9rkp5k6diig4v30n0w"; depends=[gstat lattice reshape sp]; };
 autopls = derive { name="autopls"; version="1.3"; sha256="1qf5gk1vsz1p5670w7bgzh3b15wvrx1gy6ih4sivw0vj8bcjxbw9"; depends=[pls]; };
+autovarCore = derive { name="autovarCore"; version="1.0-0"; sha256="08h51bh1m3d47nprd5z7v3k3lkrixbxwinr73zd5442wskf4x82v"; depends=[Amelia jsonlite Rcpp urca vars]; };
 aws = derive { name="aws"; version="1.9-4"; sha256="11vbsg4yhnl4995m8gq5gykrlk61y3a618g2zxkc9wdf5z4xqdny"; depends=[awsMethods gsl]; };
 awsMethods = derive { name="awsMethods"; version="1.0-3"; sha256="1r6rbrlc5wbljp2x9aqhhnjblnb3gjm217x0cbmrw1pa0cf7q5jq"; depends=[]; };
 aylmer = derive { name="aylmer"; version="1.0-11"; sha256="1b6dryvfz9yp00nj8lv8j1isnshcgwn9fx41knah9pw7dn4pxkk2"; depends=[Brobdingnag]; };
@@ -2529,13 +2531,12 @@ backShift = derive { name="backShift"; version="0.1.1"; sha256="11mr2pdg63xa5yry
 backtest = derive { name="backtest"; version="0.3-2"; sha256="06q488pynxgis1m6rxc8hgscpy8vimffpi4aamviwb089sjzilnn"; depends=[lattice]; };
 bagRboostR = derive { name="bagRboostR"; version="0.0.2"; sha256="1k9w98p3ad3myzyqhcrc4rsn7196qvhnmk5ddx3fpd1rdvy2dnby"; depends=[randomForest]; };
 bamdit = derive { name="bamdit"; version="2.0"; sha256="1zqc2iwsa9p3lvqbf87yf6j24i0c5ybpizxp4gkaibg2llaskxki"; depends=[ggplot2 gridExtra R2jags rjags]; };
-bams = derive { name="bams"; version="1.6"; sha256="1pplnpilpydxf7gcs87424cajss74q8cr9pyv2biy4pkvfql0nxl"; depends=[]; };
 bandit = derive { name="bandit"; version="0.5.0"; sha256="03mv4vbn9g4mqikd9map33gmw2fl9xvb62p7gpxs1240w5r4w3fp"; depends=[boot gam]; };
 barcode = derive { name="barcode"; version="1.1"; sha256="14zh714cwgq80zspvhw88cs5b82gvz4b6yfbshj9b7x0y2961nxd"; depends=[lattice]; };
 bartMachine = derive { name="bartMachine"; version="1.2.0"; sha256="0hcz39397v2y8qgdy67i97j0z5g2qidkkf5p9ydcqp9fp5msshq7"; depends=[car missForest randomForest rJava]; };
 base64 = derive { name="base64"; version="1.1"; sha256="1wn3zj1qlgybzid4nr6hvlyqg1rp2dwfh88vxrfby2fy2ba1nl5x"; depends=[]; };
 base64enc = derive { name="base64enc"; version="0.1-2"; sha256="0d2b7vl08abssfwprfiqc0yscb1gz4xlzlwwbf7y9z19wbyxizh5"; depends=[]; };
-baseline = derive { name="baseline"; version="1.2-0"; sha256="12gjirk9jyq7lmfkp10kcli84bld9n9m6yhcj5z6y4iaq6d8hazq"; depends=[SparseM]; };
+baseline = derive { name="baseline"; version="1.2-1"; sha256="1vk0vf8p080ainhv09fjwfspqckr0123qlzb9dadqk2601bsivgy"; depends=[SparseM]; };
 basicspace = derive { name="basicspace"; version="0.15"; sha256="11aqrai26kdwszznlhrk52jr19syl549qdq3nspbxcn2mj65f5pw"; depends=[]; };
 batade = derive { name="batade"; version="0.1"; sha256="1lr0j20iydh15l6gbn471vzbwh29n58dlpv9bcx1mnsqqnsgpmal"; depends=[hwriter]; };
 batch = derive { name="batch"; version="1.1-4"; sha256="03v8a1hsjs6nfgmhdsv6fhy3af2vahc67wsk71wrvdxwslmn669q"; depends=[]; };
@@ -2550,10 +2551,9 @@ bayesPop = derive { name="bayesPop"; version="5.3-4"; sha256="1zq0vjkz4b33niwldl
 bayesQR = derive { name="bayesQR"; version="2.2"; sha256="0w5fg7hdwpgs2dg4vzcdsm60wkxgjxhcssw9jzig5qgdjdkm07nm"; depends=[]; };
 bayesSurv = derive { name="bayesSurv"; version="2.4"; sha256="014jxlx4w6lzzq9axdk8mwwlppmly0yj9i14zhmngdbr7mxh3f87"; depends=[coda smoothSurv survival]; };
 bayesTFR = derive { name="bayesTFR"; version="4.1-2"; sha256="17qv25yrprj099vx1jj46ycgxnc4ldx6qcqx42h5gz38qqzz2q4s"; depends=[coda MASS mvtnorm wpp2012]; };
-bayesclust = derive { name="bayesclust"; version="3.1"; sha256="0zxjd64nz8c6vg6jwb2xh6kbw41a2pcmlwq5cl6k2kbplqbm2jdf"; depends=[]; };
 bayescount = derive { name="bayescount"; version="0.9.99-5"; sha256="0c2b54768wn72mk297va3k244256xlsis9cd6zn6q5n1l7ispj6j"; depends=[coda rjags runjags]; };
-bayesm = derive { name="bayesm"; version="3.0-1"; sha256="06j7zm4y8is5csk9krjv2gvk8j25nd77wk208b8zk5qld7a9q4r5"; depends=[Rcpp RcppArmadillo]; };
-bayesmix = derive { name="bayesmix"; version="0.7-3"; sha256="142132aslmmm35yai4n1d2hqqkczvrnm8ln9gwxvbczmxaggnc01"; depends=[coda rjags]; };
+bayesm = derive { name="bayesm"; version="3.0-2"; sha256="014l14k8fraxjqfch2s6ydgp1mcljvj4cgrznjyz2l35fwj3rcf3"; depends=[Rcpp RcppArmadillo]; };
+bayesmix = derive { name="bayesmix"; version="0.7-4"; sha256="1qms1nnk2nq3gqr8zf2b9ri4wv8jrxv5i8s087k1rwdvya3k5r9a"; depends=[coda rjags]; };
 bayespref = derive { name="bayespref"; version="1.0"; sha256="0gwlzs7qkgmf90np7xv85d27jjqggyhfj00vpya664a2znyjb3jm"; depends=[coda lattice MASS MCMCpack RColorBrewer]; };
 bayess = derive { name="bayess"; version="1.4"; sha256="0axipk5hn2hw3g4dfh7y3xa0dxqmi8kqpbr77nl14y7ydpija6xm"; depends=[combinat gplots MASS mnormt]; };
 bayou = derive { name="bayou"; version="1.0.1"; sha256="0l342a4lsn6b18i2kyk2hr50k69bb7jcw8dlnbi96yf1i58qcdri"; depends=[ape coda denstrip fitdistrplus geiger MASS mnormt phytools Rcpp RcppArmadillo]; };
@@ -2567,11 +2567,10 @@ bcp = derive { name="bcp"; version="3.0.1"; sha256="08sa1az1ljsi00zmj3l7z8p1j5im
 bcpa = derive { name="bcpa"; version="1.1"; sha256="0rwbd39szp0ar9nli2rswhjiwil31zgl7lnwm9phd0qjv8q0ppar"; depends=[plyr Rcpp]; };
 bcpmeta = derive { name="bcpmeta"; version="1.0"; sha256="02fw1qz9cvr7pvmcng7qg7p04wxxpmvb2s8p78f52w4bf694iqhl"; depends=[mvtnorm]; };
 bcrm = derive { name="bcrm"; version="0.4.4"; sha256="0gcigc7505fsk1m70df3n0dz553adkbs8yz2bhskb4qrw4gbmvr7"; depends=[ggplot2 mvtnorm]; };
-bcrypt = derive { name="bcrypt"; version="0.1"; sha256="0myrxdayrjdx5zvsvdv1cj1cfjnsd0llrvffw7spdnmryli7wbfh"; depends=[openssl]; };
+bcrypt = derive { name="bcrypt"; version="0.2"; sha256="0f4sw1w2k1237wipfva3k9w2a678pvfz0k86jd7djslhyimb6jrq"; depends=[openssl]; };
 bcv = derive { name="bcv"; version="1.0.1"; sha256="0yqcfariw9sw0b8cpljcr7vf5rf0cwr1wbif23icchfaxk2m42gj"; depends=[]; };
 bda = derive { name="bda"; version="5.1.3"; sha256="0v2xki9a1j6y42x03a3rrm746xx4qd3ris1m0k7alh25j3ayhs3p"; depends=[]; };
 bde = derive { name="bde"; version="1.0.1"; sha256="1f25gmjfl58x4pns89abfk85yq5aad3bgq9yqpv505g5gxk62d3v"; depends=[ggplot2 shiny]; };
-bdoc = derive { name="bdoc"; version="1.2"; sha256="15d7grc0a1hakkxhgbm2gp0awggzlmsp8zf8abj5bgfih63gcmj2"; depends=[]; };
 bdpv = derive { name="bdpv"; version="1.1"; sha256="0i6wdf27243ch8pn2chqriwxjg3g72wbvzlx52mz4ahw700xjc7n"; depends=[]; };
 bdscale = derive { name="bdscale"; version="1.2"; sha256="0j2h7ainfnh78szp355didbkmcl6d5vz1di8nznjarwxncrbgc6g"; depends=[ggplot2 scales]; };
 bdsmatrix = derive { name="bdsmatrix"; version="1.3-2"; sha256="16qhfwk0r1snm9hg32qwz7hizkpwc32m723hjm23m2026gvz2nwy"; depends=[]; };
@@ -2580,7 +2579,6 @@ bdynsys = derive { name="bdynsys"; version="1.3"; sha256="07gfyp0qwq9y1cnh7lhcz7
 beadarrayFilter = derive { name="beadarrayFilter"; version="1.1.0"; sha256="044dq5irc00v2f2gjz0vb69w7q7b84lppc55ganabdv4f0dxdblc"; depends=[beadarray RColorBrewer]; };
 beadarrayMSV = derive { name="beadarrayMSV"; version="1.1.0"; sha256="0785vmjsli37hjyppk7hlqmn0b683s1apysx9dghbw4h6rgvr8n9"; depends=[Biobase geneplotter limma rggobi]; };
 beanplot = derive { name="beanplot"; version="1.2"; sha256="0wmkr704fl8kdxkjwmaxw2a2h5dwzfgsgpncnk2p2wd4768jknj9"; depends=[]; };
-bear = derive { name="bear"; version="2.6.4"; sha256="1v5rcb7aqzc7zjbbwwcy02z79crxq90mxs32k2gfvf7jzky09hpy"; depends=[gdata ggplot2 ICSNP nlme plotrix png reshape sciplot]; };
 beepr = derive { name="beepr"; version="1.2"; sha256="0w4szy3rgj1bdcanxbcb9agyw38jqp0hc7qsn7j9700vh20zqbln"; depends=[audio stringr]; };
 beeswarm = derive { name="beeswarm"; version="0.2.0"; sha256="05yhddljmls35xdffp7iikgwh3jh5s4b7w5d2gw89w7l8hr62ypz"; depends=[]; };
 benchden = derive { name="benchden"; version="1.0.5"; sha256="1cwcgcm660k8rc8cpd9sfpzz66r55b4f4hcjc0hznpml35015zla"; depends=[]; };
@@ -2608,7 +2606,7 @@ biasbetareg = derive { name="biasbetareg"; version="1.0"; sha256="1562zdin0y5mrp
 bibtex = derive { name="bibtex"; version="0.4.0"; sha256="0sy1czwjff3kdfnmlkp036qlnw8dzdl5al7izy1cc0535hsijv0d"; depends=[]; };
 biclust = derive { name="biclust"; version="1.2.0"; sha256="03vkj7zp3dl4zbv2gzv9pahcd1018lbv4ixghvv1g0fsbndrybdg"; depends=[colorspace flexclust lattice MASS]; };
 bifactorial = derive { name="bifactorial"; version="1.4.7"; sha256="187zlsqph7m63wf6wajvs6a4a08aax9hiqssgvma6cpkpisfiz4k"; depends=[lattice multcomp mvtnorm Rcpp]; };
-bigGP = derive { name="bigGP"; version="0.1-5"; sha256="0hlfylwinkwz2s8wgqf6qwxrrdx5a02ln13y4arfwwlqi1kw0s4q"; depends=[Rmpi]; };
+bigGP = derive { name="bigGP"; version="0.1-6"; sha256="0fwm06rzx1qbh16ii93x26i4v4yb50jk67k3qmzyr3gr4z9b9xhg"; depends=[Rmpi]; };
 bigRR = derive { name="bigRR"; version="1.3-10"; sha256="08m77r9br6wb9i21smaj4pwwpq3nxdirs542gnkrpakl7bvyp6s3"; depends=[DatABEL hglm]; };
 bigalgebra = derive { name="bigalgebra"; version="0.8.4"; sha256="19rv552ac0q9djc1yvpldkc0lipdf6q143m9dnndpsqs7ayqlr4g"; depends=[BH bigmemory]; };
 biganalytics = derive { name="biganalytics"; version="1.1.1"; sha256="0g45b293c1z9n2z9ab66jsy8yaiqm7bbs2d6pglzwgmmdvwy03qd"; depends=[BH bigmemory]; };
@@ -2627,7 +2625,7 @@ bild = derive { name="bild"; version="1.1-5"; sha256="03has1zi57inicahl52ja006vv
 bimetallic = derive { name="bimetallic"; version="1.0"; sha256="181qi4dr0zc7x6wziq7jdc1his20jmprfpq3hrfm56fr5n1sj8wl"; depends=[]; };
 binGroup = derive { name="binGroup"; version="1.1-0"; sha256="1sf7prg2x1ryynf1kz7jr50svmga7kjgd5pi9qm3g2hyimz8mvs4"; depends=[]; };
 binMto = derive { name="binMto"; version="0.0-6"; sha256="1h9s42wk848x15f4glhsh2iikpra64miwlia6xz5dqlzbs4vw86k"; depends=[mvtnorm]; };
-binda = derive { name="binda"; version="1.0.2"; sha256="1hfqx79pq9bn37j8rwv11wsv6d9prph26p2hqmnxilsdxr953ib2"; depends=[entropy]; };
+binda = derive { name="binda"; version="1.0.3"; sha256="15rhxnlif7agblzd09gyllkqkf5d8cc75b4vmp7grx8a6y7w47g0"; depends=[entropy]; };
 bindata = derive { name="bindata"; version="0.9-19"; sha256="15ya21fz1kvq4qsppkn9ypiqvaq8q4vszdcgcymampa7zc07z2ld"; depends=[e1071 mvtnorm]; };
 binequality = derive { name="binequality"; version="0.6.1"; sha256="18pcz5b65zk6fwh597pcbpyy0j7gkxp5swwadxvsa3cainvyd07n"; depends=[gamlss gamlss_cens gamlss_dist ineq survival]; };
 bingat = derive { name="bingat"; version="1.1"; sha256="1pb1yy1xrfvh71pg237lkmi56p8pbam60rii5i5km1i960lq0wc1"; depends=[matrixStats network]; };
@@ -2638,28 +2636,27 @@ binomTools = derive { name="binomTools"; version="1.0-1"; sha256="14594i7iapd6hy
 binomialcftp = derive { name="binomialcftp"; version="1.0"; sha256="00c7ymlxk1xnx3x1814x7bcyir7q5sy4rb82dcpzf2bdly4xa1qr"; depends=[]; };
 binomlogit = derive { name="binomlogit"; version="1.2"; sha256="1njz1g9sciwa8q6h0zd8iw45vg3i1fwcvicj5y8srpk8wqw3qp7k"; depends=[]; };
 binr = derive { name="binr"; version="1.1"; sha256="0kgk91zy7bdrhpkh9c5bi206y9hjwjwzb508i8qqmznqyxmza70r"; depends=[]; };
-binseqtest = derive { name="binseqtest"; version="1.0"; sha256="103nbi3zq9m632665iqz0z79v963ixhd5xrjfx6drwpfp4i69pbl"; depends=[clinfun]; };
+binseqtest = derive { name="binseqtest"; version="1.0.1"; sha256="0snlrwmmmwrl3fj8652rllgays737m020qc3fqv4sfp1vn6aayng"; depends=[clinfun]; };
 bio_infer = derive { name="bio.infer"; version="1.3-3"; sha256="14pdv6yk0sk6v8g9p6bazbp7mr3wmxgfi6p6dj9n77lhqlvjcgm9"; depends=[]; };
 bio3d = derive { name="bio3d"; version="2.2-2"; sha256="0sqwl27n15sbablw4mcqgf0w2k28jc59wf8yqxrmqbg8cckfsh9j"; depends=[]; };
 bioPN = derive { name="bioPN"; version="1.2.0"; sha256="0mvqgsfc7d4h6npgg728chyp5jcsf49xhnq8cgjxfzmdayr1fwr8"; depends=[]; };
 biogas = derive { name="biogas"; version="1.0.1"; sha256="0fjxfj4c4clyp4gkzm0dl5ls7pbyaxmff56dw59wswijm4na2il7"; depends=[]; };
-biogram = derive { name="biogram"; version="1.1"; sha256="04nkm972x1nzlacfjfk3i4gsqbfhrfaygmmw13hrp47j8snv8r26"; depends=[bit slam]; };
+biogram = derive { name="biogram"; version="1.2"; sha256="1kklidp1nm9jb0nvlhlhxklh4fp86plfsslp4ajnv8i4rc6h0v19"; depends=[bit entropy slam]; };
 biom = derive { name="biom"; version="0.3.12"; sha256="18fmzp2zqjk7wm39yjlln7mpw5vw01m5kmivjb26sd6725w7zlaa"; depends=[Matrix plyr RJSONIO]; };
 biomod2 = derive { name="biomod2"; version="3.1-64"; sha256="0ymqscsdp5plhnzyl256ws9namqdcdxq3w5g79ymfpymfav10h3a"; depends=[abind gbm ggplot2 MASS mda nnet pROC randomForest raster rasterVis reshape rpart sp]; };
 bionetdata = derive { name="bionetdata"; version="1.0.1"; sha256="1l362zxgcvxln47b1vc46ad6ww8ibwhqr2myxnz1dnk2a8nj7r2q"; depends=[]; };
-biopara = derive { name="biopara"; version="1.5"; sha256="1fhhs6lkm3iphlkx6wklh9sgr1mkjkka9wv2m8fnk0xw01bdsyl5"; depends=[]; };
 biorxivr = derive { name="biorxivr"; version="0.1.1"; sha256="0v2jmqpdcci3wwpcrakqcssahy3yx07s265axs14615w74dgd4kl"; depends=[XML]; };
 bios2mds = derive { name="bios2mds"; version="1.2.2"; sha256="1avzkbk91b7ifjba5zby5r2yw5mibf2wv05a4nj27gwxfwrr21cd"; depends=[amap cluster e1071 rgl scales]; };
-biosignalEMG = derive { name="biosignalEMG"; version="1.0.2"; sha256="0ywb59w3rgac59gif1jba8qi7rjdsdj7y5czj7kv8lf01vd5dl3l"; depends=[]; };
+biosignalEMG = derive { name="biosignalEMG"; version="1.0.3"; sha256="0nbr0d2hf28csv3lhl4af7hhqivwxaa1c1aj2yy1xjvnn6fd8mr3"; depends=[]; };
 biotools = derive { name="biotools"; version="2.1"; sha256="15ncx700v5ignr3gggz5zfspskzpj3kpzsy6rg2y4pnjm1vlndgj"; depends=[boot MASS rpanel tkrplot]; };
 bipartite = derive { name="bipartite"; version="2.05"; sha256="05w3ypdxy2lfygdlvg9xv88dpsf21i60rsbvvz058zwpfzr39hfh"; depends=[fields igraph MASS permute sna vegan]; };
-biplotbootGUI = derive { name="biplotbootGUI"; version="1.0"; sha256="0pgm31nhh1b78a8ciqjxw7gf3j7hh9wjc3myj29jpl92flbqmsw0"; depends=[rgl tcltk2 tkrplot vegan]; };
+biplotbootGUI = derive { name="biplotbootGUI"; version="1.1"; sha256="0k92z9iavvq5v56x2hgkmrf339xl7ns1pvpqb4ban8r1j8glzawi"; depends=[cluster dendroextras MASS rgl shapes tcltk2 tkrplot]; };
 birdring = derive { name="birdring"; version="1.2"; sha256="1jhhvdipsx3kw8n6gw6amm1vq0m83l48dkark9vvi2hpd730ca1y"; depends=[geosphere ks lazyData raster rgdal rgeos rworldmap rworldxtra sp]; };
 birk = derive { name="birk"; version="1.3.0"; sha256="02h8vh2r1ilmfgx1j3yw9jlzwshqh70nac28qzq1f5mpqll8z1sg"; depends=[]; };
 bisectr = derive { name="bisectr"; version="0.1.0"; sha256="1vjsjshvzj66qqzg32rviklqswrb00jyq6vwrywg1hpqhf4kisv7"; depends=[devtools]; };
 bisoreg = derive { name="bisoreg"; version="1.4"; sha256="1ianhk5vrzhwb9ymzvlx9701p5c4iasxyq7nhrvm815dm15rf2wf"; depends=[bootstrap coda monreg R2WinBUGS]; };
 bit = derive { name="bit"; version="1.1-12"; sha256="0a6ig6nnjzq80r2ll4hc74za3xwzbzig6wlyb4dby0knzf3iqa6f"; depends=[]; };
-bit64 = derive { name="bit64"; version="0.9-4"; sha256="1w734l5ayr7w17a3gk2kmkqwz7v5jm830kfhyqmnd15i816lnjb9"; depends=[bit]; };
+bit64 = derive { name="bit64"; version="0.9-5"; sha256="0fz5m3fhvxgwjl76maag7yn0zdw24rx34gy6v77378fajag9yllg"; depends=[bit]; };
 bitops = derive { name="bitops"; version="1.0-6"; sha256="176nr5wpnkavn5z0yy9f7d47l37ndnn2w3gv854xav8nnybi6wwv"; depends=[]; };
 bivarRIpower = derive { name="bivarRIpower"; version="1.2"; sha256="0vgi0476rwali6k8bkp317jawzq5pf04v75xmycpmadb7drnpzy0"; depends=[]; };
 biwavelet = derive { name="biwavelet"; version="0.17.10"; sha256="0rvlpqfrgajaw5bifc3103ixj2akdhpcxqhgw9fv0r1c5kv98qz0"; depends=[fields]; };
@@ -2689,13 +2686,13 @@ bmrm = derive { name="bmrm"; version="3.0"; sha256="0ix5hfsvs2vnca0l1aflynddw6z8
 bnlearn = derive { name="bnlearn"; version="3.8.1"; sha256="07lh67nw7wpjimim44zpw8h1rq4yqa2sdjcwj95bmyc25hlzv1s1"; depends=[]; };
 bnormnlr = derive { name="bnormnlr"; version="1.0"; sha256="0l2r7vqikak47nr6spdzgjzhvmkr9dc61lfnxybmajvcyy6ymqs9"; depends=[mvtnorm numDeriv]; };
 bnpmr = derive { name="bnpmr"; version="1.1"; sha256="0hvwkdbs2p2l0iw0425nca614qy3gsqfq4mifipy98yxxvgh8qgc"; depends=[]; };
-boa = derive { name="boa"; version="1.1.7-2"; sha256="1n7i0i8jq2sa1kzhbgyqzl9d53wja7fsxd7rligc8xjm0sdsb386"; depends=[]; };
+boa = derive { name="boa"; version="1.1.8-1"; sha256="15nkr24hgv1286h9b6sdhlpljnm98fi5mmpsygl76h24dayy3854"; depends=[]; };
 boilerpipeR = derive { name="boilerpipeR"; version="1.3"; sha256="0467bjqhdmi3p02fp0r7rgm00x9ry464f2hniav990qzsw8i16q6"; depends=[rJava]; };
 bold = derive { name="bold"; version="0.2.6"; sha256="15hnbspp5s293v2jykmirf9rvdgpkd71h431gizz71ssayanzp67"; depends=[assertthat httr jsonlite plyr reshape stringr XML]; };
 boolean3 = derive { name="boolean3"; version="3.1.6"; sha256="00s6ljhqy8gpwa3kxfnm500r528iml53q364bjcl4dli2x85wa9p"; depends=[lattice mvtnorm numDeriv optimx rgenoud rlecuyer]; };
 boostSeq = derive { name="boostSeq"; version="1.0"; sha256="0sikyzhn1i6f6n7jnk1kb82j0x72rj8g5cimp2qx3fxz33i0asx6"; depends=[genetics lpSolveAPI]; };
 boostr = derive { name="boostr"; version="1.0.0"; sha256="123ag8m042i1dhd4i5pqayqxbkfdj4z0kq2fyhxfy92a7550gib2"; depends=[foreach iterators stringr]; };
-boot = derive { name="boot"; version="1.3-16"; sha256="1fdp3yccsffqpm209dy11085i81cj7g36l34bb94rmd27mqiwrfi"; depends=[]; };
+boot = derive { name="boot"; version="1.3-17"; sha256="1lxjj0sbm9v21f34srrwkniiwbc59ibjh99yry9756ic55h6jyl5"; depends=[]; };
 bootES = derive { name="bootES"; version="1.01"; sha256="00y901d5cjdpzras5w6mv851h5zgp36m5ib6dazs4vqrfpqymva8"; depends=[boot]; };
 bootLR = derive { name="bootLR"; version="0.9"; sha256="0p4hq8nfdd8jw8r8dmlb6va4g7jjnkbsah69hissa9lqawbj9pi7"; depends=[boot]; };
 bootRes = derive { name="bootRes"; version="1.2.3"; sha256="0bb7w6wyp9wjrrdcyd3wh44f5sgdj07p5sz5anhdnm97rn1ib6dz"; depends=[]; };
@@ -2713,12 +2710,11 @@ boussinesq = derive { name="boussinesq"; version="1.0.3"; sha256="1j1jarc3j5rby1
 boxplotdbl = derive { name="boxplotdbl"; version="1.2.2"; sha256="01bvp6vjnlhc4lndxwd705bzlsh7zq0i9v66mxszrcz6v8hb9rwi"; depends=[]; };
 boxr = derive { name="boxr"; version="0.2.6"; sha256="1b7xvblw2a1p8sr1gxrak404d43haa4kk7blnyir1pql8dcw24jd"; depends=[assertthat digest dplyr httpuv httr jsonlite stringr]; };
 bpca = derive { name="bpca"; version="1.2-2"; sha256="05ldz6b2s379mymj8jzvia9x6gj047gwsxvnv3zj9x8b1hvndnd6"; depends=[rgl scatterplot3d]; };
-bpcp = derive { name="bpcp"; version="1.2.5"; sha256="0dzsj0xhvn7jc8nb54191hwpw4sm7g13af5y3sgp9bhvcym8p31q"; depends=[]; };
+bpcp = derive { name="bpcp"; version="1.2.6"; sha256="0yn1d2sjl53b1c4g6b91v8j8d0rymcn25547zi4c7rafz4ips1gl"; depends=[]; };
 bpkde = derive { name="bpkde"; version="1.0-7"; sha256="1ls6rwmbgb2vzsjn34r87ab8rnz3ls61g6f4x3jpglbk0j91f0h8"; depends=[]; };
 bqtl = derive { name="bqtl"; version="1.0-30"; sha256="1v1p3wvqm5hmwpnjqaz8vlpzm036gpzpxsvy7m0v4x7nc5vrq7g6"; depends=[]; };
 brainR = derive { name="brainR"; version="1.2"; sha256="1515v6kk73p4s3vrnkpkilfxfyqrf7b762sq6j364ygsyfybvh2z"; depends=[misc3d oro_nifti rgl]; };
 brainwaver = derive { name="brainwaver"; version="1.6"; sha256="0r79dpd9bbbn34rm29512srzj3m29qgvbryvrp1mwv8mmcsh6ij6"; depends=[waveslim]; };
-branchLars = derive { name="branchLars"; version="1.0"; sha256="1adk9j77ynv7y8q04nvb468ik4nq4ff3j2nbxw596kgg5bg1ymz0"; depends=[lars Rgraphviz]; };
 breakage = derive { name="breakage"; version="1.1-1"; sha256="0zjazyz92criiimpz4wyd4hd8ccspvh3hhqpd4qkfdzdf9wp3kns"; depends=[Imap]; };
 breakaway = derive { name="breakaway"; version="1.0"; sha256="1agigb3b2ff1p9lx9ndz4hs1sgyv1g2zjb41l5p23370i5gk1nbn"; depends=[]; };
 breakpoint = derive { name="breakpoint"; version="1.1"; sha256="07k5d1jn5ahhml2q9ynpmwjm2ckyrr63qj7svh2ziyb41f5v7mfw"; depends=[doParallel foreach ggplot2 MASS msm]; };
@@ -2726,7 +2722,7 @@ brew = derive { name="brew"; version="1.0-6"; sha256="1vghazbcha8gvkwwcdagjvzx6y
 brewdata = derive { name="brewdata"; version="0.4"; sha256="1i8i3yhyph212m6jjsij61hz65a5rplxw8y2xqf6daqiisam5q6i"; depends=[RCurl stringdist XML]; };
 brglm = derive { name="brglm"; version="0.5-9"; sha256="14hxjamxyd0npak8wyfmmb17qclj5f86wz2y9qq3gbyi2s1bqw2v"; depends=[profileModel]; };
 bride = derive { name="bride"; version="1.3"; sha256="03k9jwklg1l8sqyjfh914570880ii0qb5dd9l0bg0d0qrghbj0rk"; depends=[]; };
-brms = derive { name="brms"; version="0.2.0"; sha256="1i515sz3paiwwkmgglqzb2gzb2y6m99kp95xaarpawsja8nxi2j0"; depends=[abind coda ggmcmc ggplot2 gridExtra Rcpp]; };
+brms = derive { name="brms"; version="0.3.0"; sha256="0rgh0s1nlyhq41w24bq3qf3xxxzbfrnyrqw4pk0n5syqb7rdmi6m"; depends=[abind coda ggmcmc ggplot2 gridExtra Rcpp]; };
 brnn = derive { name="brnn"; version="0.5"; sha256="0kf2fdgshk8i3jlxjfgpdfq08kzlz3k9s7rdp4bg4lg3khmah9d1"; depends=[Formula]; };
 broman = derive { name="broman"; version="0.55-2"; sha256="04pg362gmxg5lvrv333mjq06lv0q3a1mq6wrbmy87jch6f10lazi"; depends=[assertthat ggplot2 jsonlite RPushbullet]; };
 broom = derive { name="broom"; version="0.3.7"; sha256="00z4kwxdqp6g35g4x6js9rc96z8i40hzgvhf5frj9dwfpxclk145"; depends=[dplyr plyr psych stringr tidyr]; };
@@ -2766,7 +2762,7 @@ capwire = derive { name="capwire"; version="1.1.4"; sha256="18a3dnbgr55yjdk6pd7a
 car = derive { name="car"; version="2.0-25"; sha256="1h7fndsypg9jqfc4xlr8aszjgs477jsvvw4lkpgjxrlb4j779yyj"; depends=[MASS mgcv nnet pbkrtest quantreg]; };
 carcass = derive { name="carcass"; version="1.4"; sha256="16apmiackw194p5n0fivkgd2ymca9bfajasypl82xqyfk6amh088"; depends=[arm expm lme4 MASS survival]; };
 cardidates = derive { name="cardidates"; version="0.4.6"; sha256="02ib56fvn2z63sbinhwnlw123y86h6xazbkzw68sa9klqaxv69yl"; depends=[boot lattice pastecs]; };
-care = derive { name="care"; version="1.1.8"; sha256="0r1j2q23rz54rcx528n53m3hmhvb8ndqjpmmzm6j1y6lmixpqh41"; depends=[corpcor]; };
+care = derive { name="care"; version="1.1.9"; sha256="0fx5cbi1fx3hpyzghn1788rkh91i10z1ngryqc1v3iqqn3akbk4j"; depends=[corpcor]; };
 caret = derive { name="caret"; version="6.0-47"; sha256="0mpmch0435gcszj5yq4p7jpq7y9q8jk1bz3i1c9ij7a73kq2368i"; depends=[BradleyTerry2 car foreach ggplot2 lattice nlme plyr reshape2]; };
 caretEnsemble = derive { name="caretEnsemble"; version="1.0.0"; sha256="16qibyx034gi06rs8wnazfdicvrwpdsys3mvgwmb35qgzldqfizy"; depends=[caret caTools digest ggplot2 gridExtra lattice pbapply plyr]; };
 caribou = derive { name="caribou"; version="1.1"; sha256="0ibl3jhvsgjfcva0113z0di9n5n30bs90yz0scckfv1c0pjhn4xd"; depends=[]; };
@@ -2781,18 +2777,18 @@ catenary = derive { name="catenary"; version="1.1"; sha256="0khdk61fh8ngr70qf9i2
 cati = derive { name="cati"; version="0.99"; sha256="1xghdqmqfwi0wnzvrd896z4snyjqqs9kw3whmkd3cph8zf0jl931"; depends=[ade4 ape e1071 FD geometry hypervolume mice nlme rasterVis vegan]; };
 catnet = derive { name="catnet"; version="1.14.8"; sha256="03y7ddjyra3cjq7savdgickmw82ncx4k01rn752sks6rpl6bjslc"; depends=[]; };
 catspec = derive { name="catspec"; version="0.97"; sha256="1crry0vg2ijahkq9msbkqknljx6vnx2m88bmy34p9vb170g9dbs1"; depends=[]; };
-causaleffect = derive { name="causaleffect"; version="1.1.1"; sha256="1rsn3zfi24vv1s03ki0aghw4kjls95dr25473fpbmsrmm8n48cqi"; depends=[ggm igraph XML]; };
-causalsens = derive { name="causalsens"; version="0.1"; sha256="1v72zjplsa073f92qdza1zvwa1fwxlpmh8f6w5z8qcyiwqcbmifr"; depends=[]; };
+causaleffect = derive { name="causaleffect"; version="1.1.3"; sha256="04wbwl40iwyqi1j5ngss9rlsrp21qdr9pcp32ckl9g61qj8f6jxa"; depends=[ggm igraph XML]; };
+causalsens = derive { name="causalsens"; version="0.1.1"; sha256="1z92ckqa07ajm451wrldxx9y43nawlvj2bsz0afxc9mrhjwjg5dh"; depends=[]; };
 cba = derive { name="cba"; version="0.2-14"; sha256="067rm1rfz0rrq8xkzibd81pwvc9rx7ki46bncim4j5ra6i9pn24n"; depends=[proxy]; };
 ccChooser = derive { name="ccChooser"; version="0.2.6"; sha256="1vgp4zhg46hcf9ma2cmwgnfrqkmq1arh0ahyzjpfk3817vh7disc"; depends=[cluster]; };
 ccaPP = derive { name="ccaPP"; version="0.3.0"; sha256="1wj5yij02372xarhvxsnh43v0l6xb2p8rflmskw6x86vpcdqd6zw"; depends=[pcaPP Rcpp RcppArmadillo robustbase]; };
 cccd = derive { name="cccd"; version="1.5"; sha256="0m364zsrgr7mh1yhl2lqxpaf71gzq3y3pp9qgnj4spiy4iadyy7i"; depends=[deldir FNN igraph proxy]; };
 cccp = derive { name="cccp"; version="0.2-4"; sha256="1hw0xzfdycrnhkym5va430jk1b9ywf7wbm9qyj4a62n210hk4nzc"; depends=[Rcpp RcppArmadillo]; };
-cccrm = derive { name="cccrm"; version="1.1"; sha256="0q7vxzj3lblz5ddgzm8z99k0b0z194963hx96bbkqm4rv705dgb0"; depends=[gdata nlme]; };
+cccrm = derive { name="cccrm"; version="1.2.1"; sha256="180hzxm4z91hh008lysq1f0zky7qngg5z1laa1c119g4rqqcdskl"; depends=[gdata nlme]; };
 ccda = derive { name="ccda"; version="1.1"; sha256="0ya9x1b41l0pjyyfdswjyip0c2v8z7gncbj7cdz0486ad75229x7"; depends=[MASS]; };
 ccgarch = derive { name="ccgarch"; version="0.2.3"; sha256="0angffla3sk9i86v6bbsav95fp3mz5yvq7qfv0fx2v0nd2cx116w"; depends=[]; };
 cchs = derive { name="cchs"; version="0.1.0"; sha256="1x6pzwjdcklkbgr1yalijrcj3g56hj6085fh4pzqbm7xkqcj1mi6"; depends=[survival]; };
-cclust = derive { name="cclust"; version="0.6-19"; sha256="11lzzpr65jw7s0419bdy3w7cq97ysvv52ijb1wgqpa48wh1qbqqd"; depends=[]; };
+cclust = derive { name="cclust"; version="0.6-20"; sha256="1davlnrikfriczdwlprqd46axs9acvz30hhni134cisy11snlq7s"; depends=[]; };
 cda = derive { name="cda"; version="1.5.1"; sha256="09a2jb25219hq6if3bx03lsp94rp2ll9g73dhkdi665y7rlhgqwh"; depends=[dielectric plyr randtoolbox Rcpp RcppArmadillo reshape2 statmod]; };
 cdb = derive { name="cdb"; version="0.0.1"; sha256="1rdb4lacjcw67apdyiv7cl1xvv9d1mrzck1qk605n6794k7wf2ys"; depends=[bitops]; };
 cdcsis = derive { name="cdcsis"; version="1.0"; sha256="1fxdsaqpjhpffn2fxddfcrx8wxwyvfws6rxkpp57g25980xiyzkd"; depends=[ks]; };
@@ -2801,7 +2797,7 @@ cec2005benchmark = derive { name="cec2005benchmark"; version="1.0.4"; sha256="0b
 cec2013 = derive { name="cec2013"; version="0.1-5"; sha256="07i2vp1x3qaw5di5vr5z70d47hh9174pjckjlhgv0f2w97slwc1i"; depends=[]; };
 celestial = derive { name="celestial"; version="1.3"; sha256="0icsrpw8y7r0ls8ch5b25fl4rnvs6x5y2wscmcmpp4fa4x64qqg6"; depends=[RANN]; };
 cellVolumeDist = derive { name="cellVolumeDist"; version="1.3"; sha256="00hq3nbfbnmg2lhrqd0glkh5ld50fv54ll3q6v875d1lgs44sln1"; depends=[gplots minpack_lm]; };
-cellranger = derive { name="cellranger"; version="0.1.0"; sha256="1nfvh0bd99q7cili0hj6ifcg8r57fxv5k4634b7vkshy5rbc5fw1"; depends=[]; };
+cellranger = derive { name="cellranger"; version="1.0.0"; sha256="1zyf9hxhj1s660xyqp3klc11plfhyzv4fi03p7j2p5grw280cm2x"; depends=[]; };
 cem = derive { name="cem"; version="1.1.16"; sha256="1crljw5ry3hynmfg9xfnbm3ypy57m33885xg39m88gzi6ydrnsvk"; depends=[combinat lattice MatchIt nlme randomForest]; };
 censNID = derive { name="censNID"; version="0-0-1"; sha256="1ij5ci6nkqf0rq51vyh4jw5sr3y46yndfkjmwl78ppdj66axxir5"; depends=[]; };
 censReg = derive { name="censReg"; version="0.5-20"; sha256="15k7iq4275dyah3r47vgxsx6g6mr7ma53lkv6d1n89bczzys72kx"; depends=[glmmML maxLik miscTools sandwich]; };
@@ -2817,16 +2813,17 @@ cggd = derive { name="cggd"; version="0.8"; sha256="06z0mrxxc02parn9vkjv89qq4yqm
 cgh = derive { name="cgh"; version="1.0-7.1"; sha256="1fgjz43bgnswlyvrm669x697lybq3jyzz4l8ppgxqwxp4p4d2yqn"; depends=[]; };
 cghFLasso = derive { name="cghFLasso"; version="0.2-1"; sha256="0b1hnjf9g0v47hbz0dy9m6jhcl1ky20yyhhmm8myng2sndcpjsbf"; depends=[]; };
 cghseg = derive { name="cghseg"; version="1.0.2"; sha256="1x7j62aq5c1xj8ss3pys5160y6vny4pa1wvf6xh59ak2zr4xjm9h"; depends=[]; };
+cgwtools = derive { name="cgwtools"; version="3.0"; sha256="01888n056x4c8g0676jnbh6d89hamzxrh33aw6r28mzlnmfy5lmw"; depends=[]; };
 changepoint = derive { name="changepoint"; version="1.1.5"; sha256="090rak3ydlh92w0mpp2sjjx4m9x33clcs77waj20gzxbq38mqdci"; depends=[zoo]; };
 cheb = derive { name="cheb"; version="0.3"; sha256="0vqkdx7i40w493vr7xywjypr398rjzdk5g410m1yi95cy1nk4mc7"; depends=[]; };
 chebpol = derive { name="chebpol"; version="1.3-1367"; sha256="0w1yfnag0sjqjn7g5yn3wd19kkwzcchb491335h70rm360m1kr0y"; depends=[]; };
-checkmate = derive { name="checkmate"; version="1.5.3"; sha256="1d9szbszql0nz1zxplsr0w9f1c9vi11mjr5xg5960slb5v086x0g"; depends=[]; };
+checkmate = derive { name="checkmate"; version="1.6.0"; sha256="0jcqkdw850dndsh6mbyim5zgxgichmkr4yks3zh5fm9ffs1nmqkw"; depends=[]; };
 checkpoint = derive { name="checkpoint"; version="0.3.10"; sha256="147phhsv5g8k23fd355jqjqpjjj8n3s0bblm8mv5c3d0322li7ac"; depends=[]; };
 cheddar = derive { name="cheddar"; version="0.1-629"; sha256="13fmr37jj7dky5jrpr20z1iai9jbnpmwsh2pbzjwvib7561pyd6x"; depends=[]; };
 chemCal = derive { name="chemCal"; version="0.1-34"; sha256="0sn0mhp2d9a9rddfpkiv1pkrmvnv4sy18c1x2ks0lwpaklg78fbs"; depends=[]; };
 chemometrics = derive { name="chemometrics"; version="1.3.9"; sha256="089zlp4ba6yyxjh2p7fcph29lnxyk1gifb44fw7lsslvg19xlgjm"; depends=[class e1071 lars MASS mclust nnet pcaPP pls robustbase rpart som]; };
 chemosensors = derive { name="chemosensors"; version="0.7.8"; sha256="0zphfag0q6zskd301z1dldazzxr2fam6h41cpyivphaxpaljiv0m"; depends=[ggplot2 LearnBayes pls plyr quadprog RColorBrewer reshape2]; };
-cherry = derive { name="cherry"; version="0.5-10"; sha256="0fs4p5k1lwwlin5fj9z91aw59ybp60phjk293imizg6vpai5h39p"; depends=[bitops lpSolve Matrix]; };
+cherry = derive { name="cherry"; version="0.6-11"; sha256="0ixrzbzg559h0qb33b9158rk6w6as2b34b7iq5vzm429cpyzl7l8"; depends=[bitops lpSolve Matrix slam]; };
 childsds = derive { name="childsds"; version="0.5"; sha256="1fmisp6k375harjxsyzpwnd8zh3kd7vlhin18q1svfwdjyy9k3xh"; depends=[]; };
 chillR = derive { name="chillR"; version="0.55"; sha256="1b8lp4dfr3366ism7q2pddqpps3zmsyv5xg9rpyyh9yyl9ga1xhy"; depends=[fields Kendall pls]; };
 chipPCR = derive { name="chipPCR"; version="0.0.8-10"; sha256="1mff7n7ga4sfwvcq7zkjkrl68nybnm2zkn37hmxvnw9yl3ls9lnw"; depends=[lmtest MASS outliers ptw quantreg Rfit robustbase shiny signal]; };
@@ -2840,9 +2837,9 @@ choroplethrAdmin1 = derive { name="choroplethrAdmin1"; version="1.0.0"; sha256="
 choroplethrMaps = derive { name="choroplethrMaps"; version="1.0"; sha256="00dgwikfxm1p1dqz1ybsxj1j8jcmrwa08m2d3zsww2invd55pk7g"; depends=[]; };
 chromer = derive { name="chromer"; version="0.1"; sha256="0fzl2ahvzyylrh4247w9yjmwib42q96iyhdlldchj97sld66c817"; depends=[data_table dplyr httr]; };
 chromoR = derive { name="chromoR"; version="1.0"; sha256="1x11byr6i89sdk405h6jd2rbvgwrcvqvb112bndv2rh9jnrvcw4z"; depends=[gdata haarfisz]; };
-chron = derive { name="chron"; version="2.3-45"; sha256="0jkanbisi1bxh35rg0i6sl82f8r9v8va8mf8hknfvwv7p7n3ddpx"; depends=[]; };
+chron = derive { name="chron"; version="2.3-47"; sha256="1xj50kk8b8mbjpszp8i0wbripb5a4b36jcscwlbyap8n4487g34s"; depends=[]; };
 cin = derive { name="cin"; version="0.1"; sha256="1pwvy5nh5nrnysfqrzllb9fcrpddqg02c7iw3w9fij2h8s2v6kq5"; depends=[]; };
-circlize = derive { name="circlize"; version="0.2.4"; sha256="0zxd8jcim03cg77zxq9dvwlki51s9jhyaycdif7q6qc598lwwjx1"; depends=[GlobalOptions shape]; };
+circlize = derive { name="circlize"; version="0.2.5"; sha256="0kc58cin98a5w63iz20kwpll7129l1ww455hjjp4yvlpnsr6m038"; depends=[GlobalOptions shape]; };
 circular = derive { name="circular"; version="0.4-7"; sha256="1kgis2515c931ir76kpxnjx0cscw4n09a5qz1rbrhf34gv81pzqw"; depends=[boot]; };
 cit = derive { name="cit"; version="1.4"; sha256="0axmi41bydkj512jscil9mqz9g6f11khl8hi6fci96wnm9x8gw7s"; depends=[]; };
 citbcmst = derive { name="citbcmst"; version="1.0.4"; sha256="1zkd117h9nahwbg5z6byw2grg5n3l0kyvv2ifrkww7ar30a2yikl"; depends=[]; };
@@ -2850,7 +2847,7 @@ citccmst = derive { name="citccmst"; version="1.0.2"; sha256="1b7awn1hjckxisfdi4
 cjoint = derive { name="cjoint"; version="1.0.3"; sha256="0f9yh4rbgqlx12vx336isfxc3lnrl5sgbapld0qfkv93p26in9h6"; depends=[ggplot2 lmtest sandwich]; };
 clValid = derive { name="clValid"; version="0.6-6"; sha256="1l9q7684vv75jnbymaa10md13qri2wjjg7chr1z1m0rai8iq3xxw"; depends=[class cluster]; };
 cladoRcpp = derive { name="cladoRcpp"; version="0.14.4"; sha256="0d4vl7xrrwbhhx56ymw52rb5svw9nskxdya4dl04lw1qxc45p4jy"; depends=[Rcpp RcppArmadillo]; };
-class = derive { name="class"; version="7.3-12"; sha256="14baglhxk8xv3857s9b0immizh7sakk3spa5s4v28ysh7i94wx6i"; depends=[MASS]; };
+class = derive { name="class"; version="7.3-13"; sha256="0y6gms2hbzx45a10n86899hfaxjg3bjn6gfd5jhqzan5dalnp5w1"; depends=[MASS]; };
 classGraph = derive { name="classGraph"; version="0.7-4"; sha256="08cid5bdbciyijlzkx3684gx0cyzcj8myawf4dhcrz00jqrg8v60"; depends=[graph Rgraphviz]; };
 classInt = derive { name="classInt"; version="0.1-22"; sha256="0r9940bv6n43i6vlcgc19bvmcv3zlw0bi9zfs3scvah68rdb7v7l"; depends=[class e1071]; };
 classifly = derive { name="classifly"; version="0.4"; sha256="0mw1vcas0gr1r4yvh0j02zhk7kp5342r0bhhg776hqgqdczgh5zj"; depends=[class plyr]; };
@@ -2858,9 +2855,9 @@ classify = derive { name="classify"; version="1.3"; sha256="0134h12h6v06d7ldj9qg
 classyfire = derive { name="classyfire"; version="0.1-2"; sha256="0rar3mi2m1wf14lmahjbpdh1jlnisvgsbx86xbqlb8c0f8zfzxq3"; depends=[boot e1071 ggplot2 neldermead optimbase snowfall]; };
 clere = derive { name="clere"; version="1.1"; sha256="1jna5dqy47mldd557qxl7vr59v5lalhligvm3c4k6b2dfararhfr"; depends=[Rcpp RcppEigen]; };
 clhs = derive { name="clhs"; version="0.5-4"; sha256="0535mpl1dbm9ij1dvj8dsmv4fickdg47by1mvf71lgfk5mjxy5nc"; depends=[ggplot2 plyr raster reshape2 scales sp]; };
-clickstream = derive { name="clickstream"; version="1.1.4"; sha256="0z73phz31j7n49xmwdgv293qbg6ldfgibpd5713qyk7qkhk8hvl7"; depends=[arules data_table igraph plyr Rsolnp]; };
+clickstream = derive { name="clickstream"; version="1.1.5"; sha256="010bf7rxicv43z33zrbmc1j0d0wz52kk7z4czxmljqs3qs6syfn2"; depends=[arules data_table igraph linprog plyr Rsolnp]; };
 clifro = derive { name="clifro"; version="2.4-0"; sha256="1bjsfk4m7hgq8k1mw07zx34ibgmpxjw8sig9jjzsr5mp3v13kwp8"; depends=[ggplot2 lubridate RColorBrewer RCurl reshape2 scales selectr XML]; };
-climdex_pcic = derive { name="climdex.pcic"; version="1.1-5.1"; sha256="0sq5l5dmnwbq9y6zfrq7zp81c8bmxwkvl7y9iq6wi3qcr78ga6zy"; depends=[caTools PCICt Rcpp]; };
+climdex_pcic = derive { name="climdex.pcic"; version="1.1-6"; sha256="0dyhqxrma8g4ny4afv6drr885m88q2b8g1n19yy3yjbrbddyz8yl"; depends=[caTools PCICt Rcpp]; };
 clime = derive { name="clime"; version="0.4.1"; sha256="0qs9i7cprxddg1cmxhnmcfhl7v7g1r519ff2zfipxbs59m5xk9sf"; depends=[lpSolve]; };
 climwin = derive { name="climwin"; version="0.0.1"; sha256="1ajkqk6lj2d8gx7arkwrznrkrjvdc5g9789vwaawwczbdavyi8kd"; depends=[evd ggplot2 gridExtra lme4 lubridate MuMIn reshape]; };
 clinUtiDNA = derive { name="clinUtiDNA"; version="1.0"; sha256="0x3hb09073gkh60fc8ia0sfk948sm6z6j8sqkz275k4m8ryrabas"; depends=[]; };
@@ -2873,14 +2870,14 @@ clpAPI = derive { name="clpAPI"; version="1.2.6"; sha256="1kgzmzf87b0j43ch21anmm
 clue = derive { name="clue"; version="0.3-50"; sha256="0r3lb625a6vhxr7im2slz279zav9i74s0b9srkarqmz1bhaf6ly2"; depends=[cluster]; };
 clues = derive { name="clues"; version="0.5.6"; sha256="1g0pjj4as5wfc7qr3nwkzgxxxp3mrdq7djn8p8qjba6kcdjxak1i"; depends=[]; };
 clustMD = derive { name="clustMD"; version="1.1"; sha256="192li0nx2hwhh5y21xs70vrnzw3wxbzr95f06makaxcrwf4xlp16"; depends=[MASS mclust msm mvtnorm tmvtnorm truncnorm]; };
-cluster = derive { name="cluster"; version="2.0.1"; sha256="09l2vydyabk7x19bblxbjm68vnmifz46m5k3csb1snpbhq6qx52c"; depends=[]; };
+cluster = derive { name="cluster"; version="2.0.2"; sha256="1zk6y68l5lz0yvzr1d5rs45xid2pcjpvhdarwxz074iqb0ha5sih"; depends=[]; };
 cluster_datasets = derive { name="cluster.datasets"; version="1.0-1"; sha256="0i68s9305q08fhynpq24qnlw03gg4hbk4184z3q3ycbi8njpr4il"; depends=[]; };
 clusterCrit = derive { name="clusterCrit"; version="1.2.5"; sha256="1xwbvvzrh2dz47y4snmhb96mriblk3czy7dp5bmyvckh5papr2xv"; depends=[]; };
 clusterGeneration = derive { name="clusterGeneration"; version="1.3.4"; sha256="1ak8p2sxz3y9scyva7niywyadmppg3yhvn6mwjq7z7cabbcilnbw"; depends=[MASS]; };
 clusterGenomics = derive { name="clusterGenomics"; version="1.0"; sha256="127hvpg06is4x486g1d5x7dfkrbk7dj35qkds0pggnqxkq3wsc1c"; depends=[]; };
 clusterPower = derive { name="clusterPower"; version="0.5"; sha256="1g2qpvizyk4q3qlgvar436nrfqxwp5y8yi2y6rch9ak5mbg3yzqb"; depends=[lme4]; };
 clusterRepro = derive { name="clusterRepro"; version="0.5-1.1"; sha256="0vsf6cq6d51a4w23ph8kdz2h8dfpzyd6i85049p2wakn1kdvkz5p"; depends=[]; };
-clusterSEs = derive { name="clusterSEs"; version="1.2"; sha256="0ykfwvibps20w62xrdj4cr6w63gig3dyjmdq8m937g8qsmhd74lz"; depends=[lmtest mlogit sandwich]; };
+clusterSEs = derive { name="clusterSEs"; version="2.0"; sha256="18m1d5i2mjv5yhi0zbkqwx9c20x79kqwq8cj62xcl531q1gx4bpq"; depends=[AER Formula lmtest mlogit plm sandwich]; };
 clusterSim = derive { name="clusterSim"; version="0.44-2"; sha256="1xf3byri6mwlf89n896bxffmf3c6yqqh992npg9sqznx955hcggv"; depends=[ade4 cluster e1071 MASS R2HTML rgl]; };
 clusterfly = derive { name="clusterfly"; version="0.4"; sha256="0mxpn7aywqadyk43rr7dlvj0zjcyf4q7qbqw5ds38si7ik34lkrg"; depends=[e1071 plyr reshape2 rggobi RGtk2]; };
 clustergas = derive { name="clustergas"; version="1.0"; sha256="1vf4czpwk71yxd26vm5sal0ml20ssjrq4bmk31yzxydpxn495fg8"; depends=[cluster]; };
@@ -2894,11 +2891,11 @@ clv = derive { name="clv"; version="0.3-2.1"; sha256="1qgp2qhblg6ysyrlg0ad169ahw
 cmaes = derive { name="cmaes"; version="1.0-11"; sha256="1hwf49d1m660jdngqak9pqasysmpc4jcgr8m04szwbyzyy6xrm5k"; depends=[]; };
 cmm = derive { name="cmm"; version="0.8"; sha256="1661v2lzxgf4s37wdsrnbsvqwppcr7mbp70i1xsysfzki1z6xr19"; depends=[]; };
 cmprsk = derive { name="cmprsk"; version="2.2-7"; sha256="1imr3wpnj4g57n2x4ryahl4lk8lvq9y2r7319zv3k82mznha8bcm"; depends=[survival]; };
-cmprskQR = derive { name="cmprskQR"; version="0.9.0"; sha256="1vnrfhlmmyamkpd8lsfznfpcq0mspkiwn3j23yj4sarfx5n32s9a"; depends=[quantreg survival]; };
 cmrutils = derive { name="cmrutils"; version="1.2-2"; sha256="0gc4sx8g9364sybmrqdjdvddqjd9ps6v205kaw0nqdx30xn96hmm"; depends=[chron]; };
+cmsaf = derive { name="cmsaf"; version="1.4"; sha256="1pdfwsy9cjzikld19dh1fhq16l03wha5pg144wp3j1g78cldyb08"; depends=[fields ncdf4 raster RNetCDF sp]; };
 cmvnorm = derive { name="cmvnorm"; version="1.0-1"; sha256="00cm7zfxbc5md3p6sakan64a6rzz7nbq0bqq9ys2iyxpilxalj3m"; depends=[elliptic emulator]; };
 cna = derive { name="cna"; version="1.0-3"; sha256="1iy0ispazhib30kh5wp3jziiyf0992nrdklrq80n0w3zhjyi21rh"; depends=[]; };
-cncaGUI = derive { name="cncaGUI"; version="0.0-2"; sha256="0iwsaqqnh142syag91rzwwsc9n2qiw4xh5x1gjsgc74ywdm4g5fz"; depends=[rgl tcltk2 tkrplot]; };
+cncaGUI = derive { name="cncaGUI"; version="1.0"; sha256="1v55kvrc05bsm1qdyfw3r3h64wlv3s6clxbr8k512lfk99ry42kn"; depends=[MASS plotrix rgl shapes tcltk2 tkrplot]; };
 coalescentMCMC = derive { name="coalescentMCMC"; version="0.4-1"; sha256="0xxv1sw5byf84wdypg5sfazrmj75h4xpv7wh4x5cr9k0vgf80b3s"; depends=[ape coda lattice Matrix phangorn]; };
 coarseDataTools = derive { name="coarseDataTools"; version="0.6-2"; sha256="1nnh61kfw294cxawz9i8yf37ddzsn5s532vvkaz0ychk0390wmi5"; depends=[MCMCpack]; };
 cobs = derive { name="cobs"; version="1.3-0"; sha256="1aly7ir7vzir9wnbhyfbrkl7dbq68f79jwxhqrfpf0v2m5kxhz88"; depends=[quantreg SparseM]; };
@@ -2926,6 +2923,7 @@ colourlovers = derive { name="colourlovers"; version="0.1.4"; sha256="1c5g9z7ckn
 comato = derive { name="comato"; version="1.0"; sha256="03jnvv0sczy13r81aljhj9kv09sl5hrs0n5bn3pdi7ba64zgbjiw"; depends=[cluster clusterSim gdata igraph lattice Matrix XML]; };
 combinat = derive { name="combinat"; version="0.0-8"; sha256="1h9hr88gigihc4na7lb5i7rn4az1xa7sb34zvnznaj6pdrmwy4qm"; depends=[]; };
 comclim = derive { name="comclim"; version="0.9.4"; sha256="0m6ynccscsrrq70p0drwrwxp4skc630kv1l5smh48pi8kagahj1g"; depends=[]; };
+cometExactTest = derive { name="cometExactTest"; version="0.1.2"; sha256="0d0ccl09vcgj683p0i4g1dhnqnk61smdva4cbw6s6jdr7nqm6xa8"; depends=[]; };
 commandr = derive { name="commandr"; version="1.0.1"; sha256="1d6cha5wc1nx6jm8jscl7kgvn33xv0yxwjf6h3ar3dfbvi4pp5fk"; depends=[]; };
 commentr = derive { name="commentr"; version="0.1"; sha256="0kyi7xd2f2b1avk78bmkbagyjqwwx21hca670n38k1a28kvnjpix"; depends=[stringr]; };
 commonmark = derive { name="commonmark"; version="0.4"; sha256="0canhzzc91fpcg53zms12k382zj4db652vh5cn74xrp73z8yvabk"; depends=[]; };
@@ -2960,6 +2958,7 @@ constrainedKriging = derive { name="constrainedKriging"; version="0.2.4"; sha256
 contfrac = derive { name="contfrac"; version="1.1-9"; sha256="16yl96bmr16a18qfz6y5zf7p02ky1jy2iimcb1wp50g7imlcq840"; depends=[]; };
 conting = derive { name="conting"; version="1.5"; sha256="02vkpzdcwsny40jdcxgjfrx89lw1gq864s3fgswa9bfxfps9p58h"; depends=[BMS coda gtools mvtnorm tseries]; };
 contrast = derive { name="contrast"; version="0.19"; sha256="1kc3scz3msa52lplc79mmn4z99kq1p2vlb18wqxa9q2ma133x6pl"; depends=[rms]; };
+controlTest = derive { name="controlTest"; version="1.0"; sha256="0gzhd92qy3dykwdfwckw6x46bd9m044hcn4bqwpv16af1xbrj963"; depends=[survival]; };
 convevol = derive { name="convevol"; version="1.0"; sha256="05nhpndixvrmiq5paswj7qwsq3k3al34q3j751bic4kb8zhby3fk"; depends=[ape cluster geiger MASS phytools]; };
 cooccur = derive { name="cooccur"; version="1.2"; sha256="0v26aa6j77dmm7pdij4qaz03mxn69aa71rw6n5yl3b9qb0w4k81z"; depends=[ggplot2 gmp reshape2]; };
 cooptrees = derive { name="cooptrees"; version="1.0"; sha256="0izvwna1jsqik3v5fz1r4c86irvma42clw0p4rdvwswv5pk698i1"; depends=[gtools igraph optrees]; };
@@ -2974,10 +2973,10 @@ corclass = derive { name="corclass"; version="0.1"; sha256="02mxypdrjwf8psk0j9gg
 corcounts = derive { name="corcounts"; version="1.4"; sha256="0irlx62ql5rp5s7nnjdy6jh723wl4039wn10zxri8ihxwqsyyz3f"; depends=[]; };
 coreNLP = derive { name="coreNLP"; version="0.4-1"; sha256="0a6pc588ddi9qyi5gsnzzvm4k0p5sp5bnjrlsskaymzdq4rp6miz"; depends=[plotrix rJava XML]; };
 coreTDT = derive { name="coreTDT"; version="1.0"; sha256="14rnh61gk3m6g8rq77hm9ybds0px15di2mxm3jiyfdfynx5ng58f"; depends=[]; };
-corpcor = derive { name="corpcor"; version="1.6.7"; sha256="1vfzi17vkvzbqgzhmpdhybb6lli0z9vm9p31cwb8bn8ddlkn5ll4"; depends=[]; };
+corpcor = derive { name="corpcor"; version="1.6.8"; sha256="0gnwqzfhxhxy7zxjzgga9l2npn588jjavqlmv9dag7ciq1kxmzk9"; depends=[]; };
 corpora = derive { name="corpora"; version="0.4-3"; sha256="0zh8mabfy9yqgx7asi4yqv4c0kj59yvyxxaxjgdjy5kkr17zd4g4"; depends=[]; };
 correlate = derive { name="correlate"; version="1.0"; sha256="0hv0i928f49p8n78hd3bcx923l2x0zcs4kwj71ph8gm7s8540fhc"; depends=[]; };
-corrgram = derive { name="corrgram"; version="1.7"; sha256="1zs0i4dhl1c5ms70cmy8cc9qi9y3ssd62brd7jrpagz56sdwwx0k"; depends=[seriation]; };
+corrgram = derive { name="corrgram"; version="1.8"; sha256="0myaf0j2sa895xiczhn6r97j988jxc1bv8wnh9cw2ppxzxqly4rg"; depends=[seriation]; };
 corrplot = derive { name="corrplot"; version="0.73"; sha256="0xnlkb8lhdjcc10drym9ymqzvfwa3kvf955y0k66z5jvabzyjkck"; depends=[]; };
 corrsieve = derive { name="corrsieve"; version="1.6-8"; sha256="0ak3j9khcwv5rxbicck2sr260wpmd3xj254y7pdavx2fk0b72yxs"; depends=[]; };
 cosinor = derive { name="cosinor"; version="1.1"; sha256="02nnqg51vq48lzk667cyarnmhcf5mifnsdij7dlgqvz2k4fdq4pl"; depends=[ggplot2 shiny]; };
@@ -2991,9 +2990,9 @@ countrycode = derive { name="countrycode"; version="0.18"; sha256="1by3xws2c43ry
 covLCA = derive { name="covLCA"; version="1.0"; sha256="15jsjrlaws1cqyrwvh4lzbhxkb11jmgpmddg98nfrzmjpczn2iw3"; depends=[Matrix mlogit poLCA]; };
 covRobust = derive { name="covRobust"; version="1.1-0"; sha256="1nvy5cqs4g565qj2hhgk5spr58ps2bhas3i752rf7wvrskb89fk7"; depends=[]; };
 covTest = derive { name="covTest"; version="1.02"; sha256="0p4di8bdjghsq5jd678dprlhiwnxr5piqlx2z7hi2bjjpvvl5657"; depends=[glmnet glmpath lars MASS]; };
-covr = derive { name="covr"; version="1.0.0"; sha256="1svq2dcqnd5iwq75nk38lxa3dshiwil2ksd3666713agbqzikgcz"; depends=[crayon devtools htmltools httr jsonlite rex]; };
+covr = derive { name="covr"; version="1.2.0"; sha256="1gavcqqbg211sv52sicrh87vif71dl6n9xfcb6b3giqw897w7vrc"; depends=[crayon devtools htmltools httr jsonlite rex]; };
 covreg = derive { name="covreg"; version="1.0"; sha256="0v19yhknklmgl58zhvg4szznb374cdh65i7s8pcj2nwrarycwzaq"; depends=[]; };
-cowplot = derive { name="cowplot"; version="0.4.0"; sha256="06zpzqm19lmvlwl6pkhlb4iw8y9mq69xw002yggfnfm5lb3plsgs"; depends=[ggplot2 gtable plyr]; };
+cowplot = derive { name="cowplot"; version="0.5.0"; sha256="1syldi47xl2fbdn3dbclc2xyp2la8xs3hp45qmg9565g4m3ixm14"; depends=[ggplot2 gtable plyr]; };
 coxinterval = derive { name="coxinterval"; version="1.2"; sha256="0vb7vmzbb2dsihx04jbp2yvzcr033g435mywmwimqhfqdrmjx3fi"; depends=[Matrix survival timereg]; };
 coxme = derive { name="coxme"; version="2.2-5"; sha256="0lpdwpvsgjgmbf55qqhflw4q40xmqm422inkssgn3ladcp68gb1s"; depends=[bdsmatrix Matrix nlme survival]; };
 coxphf = derive { name="coxphf"; version="1.11"; sha256="0494szmhc7qp1qynrqf3kmna26h4ams40qr6w7qj4al54mkp0346"; depends=[survival]; };
@@ -3017,7 +3016,7 @@ crantastic = derive { name="crantastic"; version="0.1"; sha256="0y2w9g100llnyw2q
 crawl = derive { name="crawl"; version="1.4-1"; sha256="175w5933h5hhhjnrc0l1kg5q24b8pclnf5sf36gj1pmg8s58d1gp"; depends=[mvtnorm raster sp]; };
 crayon = derive { name="crayon"; version="1.3.0"; sha256="1s51ijdsss02d6wwbx2r14vz03w8b17757rh43i7nc1vh36ylbjk"; depends=[memoise]; };
 crblocks = derive { name="crblocks"; version="0.9-1"; sha256="1m6yy6jb1dld7m9jaasms5ps8sn3v039jvlk8b0c08hmm7y0rm3z"; depends=[]; };
-crch = derive { name="crch"; version="0.1-0"; sha256="1f4y2dd6lxsryyjjv569bxh1b4ymcnma0m9k7j150anzvkbrgnjn"; depends=[Formula ordinal]; };
+crch = derive { name="crch"; version="0.9-0"; sha256="0kd71lv239sn08f3v63k18dxxn6zbk3m0znx2xrmd4a2akrqwjsj"; depends=[Formula ordinal]; };
 crimCV = derive { name="crimCV"; version="0.9.3"; sha256="1p2cma78fb9a2ckmwdvpb6fc0818xw2mvq565dgiimgkdmmr0iid"; depends=[]; };
 crimelinkage = derive { name="crimelinkage"; version="0.0.3"; sha256="018ni9jgnm4k8vybz99drsx8phb0ar3x0raa5ydkfpgqp525sayi"; depends=[geosphere igraph]; };
 crmn = derive { name="crmn"; version="0.0.20"; sha256="1kl1k1s2gm63f9768cg8w4j6y1gq4hws3i7hdfhj7k9015s0a25p"; depends=[Biobase pcaMethods]; };
@@ -3025,13 +3024,14 @@ crn = derive { name="crn"; version="1.1"; sha256="1fw0cwx478bs6hxidisykz444jj5g1
 crossReg = derive { name="crossReg"; version="1.0"; sha256="1866jhfnksv9rk89vw7w4gaxi76bxfjvqxx7cfa8nlrcsmaqd7rf"; depends=[]; };
 crossdes = derive { name="crossdes"; version="1.1-1"; sha256="1d7lv3ibq1rwxx8kc3ia6l9dbz2dxdd5pnf2vhhjmwm448iamcfd"; depends=[AlgDesign gtools]; };
 crossmatch = derive { name="crossmatch"; version="1.3-1"; sha256="082lrv2129mfhwlh99z3g8id3a29s8854skl152bl3ig8pk2gbjz"; depends=[nbpMatching survival]; };
-crossval = derive { name="crossval"; version="1.0.2"; sha256="1imqmrr86yr2ml9x8cycnlr7d8yymyyypi87kxqjc32s2r16s0cx"; depends=[]; };
+crossval = derive { name="crossval"; version="1.0.3"; sha256="0acpcisg6pkxblyc4j9hiri58h1rn7ay43p5ib5ia8a4a8bnfa4p"; depends=[]; };
 crp_CSFP = derive { name="crp.CSFP"; version="2.0"; sha256="0ji208hn3zimql0xhy8bl7w0vg40szw28fia7k1f7g9z0wbl9xqp"; depends=[MASS]; };
 crqa = derive { name="crqa"; version="1.0.5"; sha256="0kiw90p89mf207mmky98g2d4l9mnhzi4dy08d810nm16wiqabkw4"; depends=[fields Matrix pracma tseriesChaos]; };
 crrSC = derive { name="crrSC"; version="1.1"; sha256="171cw56q2yv1vb4qd0va75i2q89jcw1126q8pcbv0235g7p2a86z"; depends=[survival]; };
+crrp = derive { name="crrp"; version="1.0"; sha256="1fq54jr6avrli91a4z1hp5img4kghyw1yvjr5xyccsanf9i35x8r"; depends=[cmprsk Matrix survival]; };
 crrstep = derive { name="crrstep"; version="2015-2.1"; sha256="03vd97prws9gxc7iv3jfzffvlrzhjh0g6kyvclrf87gdnwifyn1z"; depends=[cmprsk]; };
 crs = derive { name="crs"; version="0.15-24"; sha256="08k8vim4n85ll16zpkwbf3riz641kafn699qsg0h746zqzi1kfn7"; depends=[boot np quantreg rgl]; };
-crunch = derive { name="crunch"; version="1.2.1"; sha256="0p3d7iwphywyfb0m9s3fnqhdhf9klgf1cswilaz9ngxfzh5g3df2"; depends=[httr jsonlite RCurl]; };
+crunch = derive { name="crunch"; version="1.3.2"; sha256="021xzhxmid5r9f9c02vkywp498xmgyqcdg0yb20j507dabkbayjr"; depends=[httr jsonlite RCurl]; };
 csSAM = derive { name="csSAM"; version="1.2.4"; sha256="1ms8w4v5m9cxs9amqyljc2hr1178cz6pbhmv7iiq9yj1ijnl4r1x"; depends=[]; };
 csampling = derive { name="csampling"; version="1.2-2"; sha256="0gj85cgc3lgv7isqbkng4wgzg8gqcic89768q2p23k4jhhn6xm2w"; depends=[marg statmod survival]; };
 cshapes = derive { name="cshapes"; version="0.4-2"; sha256="015mkh0iwdbhpbk8gpnq48pp026mfidd69rj70arpmg3knd2jvff"; depends=[maptools plyr sp]; };
@@ -3049,16 +3049,18 @@ cudaBayesregData = derive { name="cudaBayesregData"; version="0.3-11"; sha256="1
 cudia = derive { name="cudia"; version="0.1"; sha256="1ms3bc8sp6l3bm75j418mmb707sy3gyvxznhfias3nd4sw7i074x"; depends=[MCMCpack mvtnorm]; };
 cumSeg = derive { name="cumSeg"; version="1.1"; sha256="01hn3j1i7bi2r9vsqwbgy1f1alcisxyf4316xx57bg82lb34d0s5"; depends=[lars]; };
 cumplyr = derive { name="cumplyr"; version="0.1-1"; sha256="07sz1wryl3kxbk67qyvnkrkdrp4virlsaia0y6rf9bqdw7rc6vi2"; depends=[]; };
-curl = derive { name="curl"; version="0.8"; sha256="1j24w2hswcs3hl47b60rz3scbqpd2s2dfa2fbf1c9xxb3fi1m38w"; depends=[]; };
+curl = derive { name="curl"; version="0.9.1"; sha256="0kz7c6cyhan2c9snizzf1b8ppipxb9hnkfsfkik86y8sw7yhw4jp"; depends=[]; };
 currentSurvival = derive { name="currentSurvival"; version="1.0"; sha256="0bqpfwf4v4pb024a98qwg81m6zd7ljg1ps42ifhxpqx7b9gdyi6c"; depends=[cmprsk survival]; };
 curvHDR = derive { name="curvHDR"; version="1.0-3"; sha256="0rq72prxv2r5nicss9mh4wpkfjvlbb885w85ag4qrqijzq6y8q04"; depends=[feature flowCore geometry hdrcde ks misc3d ptinpoly rgl]; };
 curvetest = derive { name="curvetest"; version="2.2"; sha256="1lz6rx9fmgyrlci1dyanscp2a18ki9lhrwnrzhp062flysffimg6"; depends=[locfit R_methodsS3 R_oo]; };
+cusp = derive { name="cusp"; version="2.3.1"; sha256="0fs5zwxh2wrhyqcycz09qskbv57hfw1ag32jk9q12lqxpsxkws8v"; depends=[]; };
 cutoffR = derive { name="cutoffR"; version="1.0"; sha256="1801jylmpp4msyf07rhg4153kky1zvi4v0kkjb9d51dc7zkhh531"; depends=[ggplot2 reshape2]; };
 cuttlefish_model = derive { name="cuttlefish.model"; version="1.0"; sha256="1rmkfyfd1323g2ymd5gi1aksp160cwy5ha5cjqh5r6fzd8hhqjxs"; depends=[]; };
 cvAUC = derive { name="cvAUC"; version="1.1.0"; sha256="13bk97l5nn97h85iz93zxazhr63n21nwyrpnl856as9qp59yvn64"; depends=[data_table ROCR]; };
 cvTools = derive { name="cvTools"; version="0.3.2"; sha256="0b7xb6dmhqbvz32zyfbdvm9zjyc59snic6wp1r21ina48hchn3sj"; depends=[lattice robustbase]; };
 cvplogistic = derive { name="cvplogistic"; version="3.1-0"; sha256="1lm66nn0q7665r64rdslxp35b7drdss4mys42ks54xdydcminns9"; depends=[]; };
 cvq2 = derive { name="cvq2"; version="1.2.0"; sha256="19k95xg2y3wd4mx3wvbrc1invybd446g13vsp3dv05nw2kx4f6w8"; depends=[]; };
+cvxbiclustr = derive { name="cvxbiclustr"; version="0.0.1"; sha256="00k75zy8v6qd5fg0h258i5z8ljjkfgkxz45cspysl1ap89d5n7df"; depends=[igraph Matrix]; };
 cvxclustr = derive { name="cvxclustr"; version="1.1.1"; sha256="0idmx4wgz4d0b1xzmlq5bsk2f2q38lpf9c117hg97xsfndzn7vqj"; depends=[igraph Matrix]; };
 cwhmisc = derive { name="cwhmisc"; version="5.0"; sha256="0b70ssss48kpjyimwm8hwcx82whg77j40qxaaj4vhhqc8d2bzgd2"; depends=[lattice]; };
 cwm = derive { name="cwm"; version="0.0.3"; sha256="1ln2l12whjhc2gx38hkf3xx26w5vz7m377kv67irh6rrywqqsyxn"; depends=[MASS matlab permute]; };
@@ -3067,8 +3069,9 @@ cycloids = derive { name="cycloids"; version="1.0"; sha256="00pdxny11mhfi8hf76bf
 cyphid = derive { name="cyphid"; version="1.1"; sha256="0ya9w8aw27n0mvvjvni4hxsr4xc8dd08pjxx7zkfl1ynfn5b08am"; depends=[fda]; };
 cytoDiv = derive { name="cytoDiv"; version="0.5-3"; sha256="00c0gqgypywgbhavb15bvj6ijrk4b5zk86w85n9kwr4069b7jvwc"; depends=[GenKern plotrix]; };
 d3Network = derive { name="d3Network"; version="0.5.2.1"; sha256="1gh979z9wksyxxxdzlfzibn0ysvf6h1ij7vwpd55fvbwr308syaw"; depends=[plyr rjson whisker]; };
+d3heatmap = derive { name="d3heatmap"; version="0.6.0"; sha256="1whagc3pyb03j7p3wsphcfivirgh5an5sx4im5iw2g6a9v7zh0gv"; depends=[base64enc dendextend htmlwidgets png scales]; };
 dMod = derive { name="dMod"; version="0.1"; sha256="0170hvgngwxr0qfl7knmj0l2gg053xj5yfd5hkfyjnl6ivcsw3c9"; depends=[cOde ggplot2 trust]; };
-dae = derive { name="dae"; version="2.7-0"; sha256="1pfd3zyvs29ij8xa1ngz2din4srl45rjnjc576h1mz16l7h5kx53"; depends=[ggplot2]; };
+dae = derive { name="dae"; version="2.7-2"; sha256="0b38bwk5c8fzgvkg8jpci4n8cj94zdypc099apfjzy2gkw5l71ym"; depends=[ggplot2]; };
 daewr = derive { name="daewr"; version="1.1-4"; sha256="0pmz4721999vf023hpvsf17k5fgqpwnisnwssmav46glhmzl2cyj"; depends=[BsMD FrF2 lattice]; };
 daff = derive { name="daff"; version="0.1.4"; sha256="1g08m9qyrlwxdy9w18132dc9klz6ayw5jbn700vkzvqibfc1l7cx"; depends=[jsonlite V8]; };
 dafs = derive { name="dafs"; version="1.0-37"; sha256="1vdi57qaqdn39yf1ih2gzry02l289q4bffpksglsl4shs6bg2206"; depends=[s20x]; };
@@ -3081,7 +3084,7 @@ dashboard = derive { name="dashboard"; version="0.1.0"; sha256="1znqwvz49r47lp6q
 data_table = derive { name="data.table"; version="1.9.4"; sha256="0gsnjjly3mxwfs6q0kjr42vr234mprp8kcyzcsa4dqf2ya2gs1s6"; depends=[chron reshape2]; };
 data_tree = derive { name="data.tree"; version="0.1.6"; sha256="09pk4c5jkj69m6sxa2pbs1wh1w4rsg799w72fx9ib4jv22hjvrhc"; depends=[R6]; };
 dataQualityR = derive { name="dataQualityR"; version="1.0"; sha256="0f2410sd6kldv7zkqsmbz1js0p5iq7zwlnfwmmnlbrd303p35p3j"; depends=[]; };
-dataRetrieval = derive { name="dataRetrieval"; version="2.2.1"; sha256="1mq32blqdsc1zj3l7wbxdc9asl2nkrby5kijdk0rix574cxml9qm"; depends=[lubridate plyr RCurl reshape2 XML]; };
+dataRetrieval = derive { name="dataRetrieval"; version="2.3.0"; sha256="0a9v2k473g4a49w9a1xk1x3xd9hdmc5m5xsqh3790vfx89drza69"; depends=[lubridate plyr RCurl reshape2 XML]; };
 datacheck = derive { name="datacheck"; version="1.2.2"; sha256="1i3n5g1b6ix8gpn4c74s7ll1dbrllrzgpb1f3hk449d6p4kmisq6"; depends=[Hmisc shiny stringr]; };
 dataframes2xls = derive { name="dataframes2xls"; version="0.4.6"; sha256="18m4cbr3pxdn5ynxwd8klwwli3cyfjcn83pl17sn1rbavqlnkq5c"; depends=[]; };
 datalist = derive { name="datalist"; version="0.2"; sha256="0q82wira0sfi63cn66f5cfyd15f19ig7pbmpk56j38a3115l2fmn"; depends=[assertthat]; };
@@ -3107,10 +3110,10 @@ dclone = derive { name="dclone"; version="2.0-0"; sha256="1j8g955rvdgcmc9vnz3xiz
 dcmle = derive { name="dcmle"; version="0.2-4"; sha256="0ddb0x0lwk8jgx05k747sa33d2rrj4g2p4aj0m5bw1c9d5gril0m"; depends=[coda dclone lattice rjags]; };
 dcmr = derive { name="dcmr"; version="1.0"; sha256="1a89wr1n8sykjbwa316zlmcffaysksrqnbd89anxqj8sgw9xv6jq"; depends=[ggplot2 KFAS plyr reshape2 tableplot]; };
 dcv = derive { name="dcv"; version="0.1.1"; sha256="12c716x8dnxnqksibpmyysqp2axggvy9dpd55s9bhnsvqvi6dshj"; depends=[lmtest]; };
-ddalpha = derive { name="ddalpha"; version="1.1.1"; sha256="1i0zchgp5pdfa9p1mpd9svbigbn01jqfl47nnqixzlgz1808929c"; depends=[BH class MASS Rcpp robustbase]; };
-ddeploy = derive { name="ddeploy"; version="1.0.2"; sha256="115k379l39gzddvn0l45l0sr0wyd7r486i28qs2hfyjnk1288vrs"; depends=[httr jsonlite]; };
+ddalpha = derive { name="ddalpha"; version="1.1.2.3"; sha256="1n1502is99gxw84g4a0n8ciq2pr8dpvi7cmzcxqvcpqdjrjdhr20"; depends=[BH class MASS Rcpp robustbase]; };
+ddeploy = derive { name="ddeploy"; version="1.0.4"; sha256="06s4mn93sl33gldda9qab8l3nqig8zq0fh1s2f98igsysmn31br5"; depends=[httr jsonlite]; };
 ddst = derive { name="ddst"; version="1.03"; sha256="0zbqw4qmrh80jjgn8jzbnq3kykj1v5bsg6k751vircc0x9vnig3j"; depends=[evd orthopolynom]; };
-deSolve = derive { name="deSolve"; version="1.11"; sha256="014fbrgzlarg2w27kq9qy7631hvhlf7ldrn5g8x2xibb260832s1"; depends=[]; };
+deSolve = derive { name="deSolve"; version="1.12"; sha256="0npcayl6q2f32b3iflfgs7gg2slg4dfgdcz4awpllza0lwgzyyfj"; depends=[]; };
 deTestSet = derive { name="deTestSet"; version="1.1.2"; sha256="142261xjlz6h9vakiks04rz7hgv9b5j6s77acavd5s5mpi51ysh7"; depends=[deSolve]; };
 deal = derive { name="deal"; version="1.2-37"; sha256="1nn2blmxz3j5yzpwfviarnmabbyivc25cbfhcf814avrhpysvpxa"; depends=[]; };
 deamer = derive { name="deamer"; version="1.0"; sha256="1xbxr78n6s1yhf192ab4syi1naqlwl9z4cxzchrkw80q7bxqfiz8"; depends=[]; };
@@ -3131,7 +3134,7 @@ demi = derive { name="demi"; version="1.1.2"; sha256="04dq4db9ibvv91nm0gz8dfbgv1
 deming = derive { name="deming"; version="1.0-1"; sha256="00v59qb6qwbwsvcwi59d0c0g3czfz1190ccj4dx6yarizr4g6cy8"; depends=[boot]; };
 demoKde = derive { name="demoKde"; version="0.9-3"; sha256="1nkvsjms1gfvjz5l7zza0cgx4yqmn2kgnax44pysn0zqmhfny8bw"; depends=[]; };
 demography = derive { name="demography"; version="1.18"; sha256="17r7sz5ikngc4qg495wmn99xawmllpx7rw2gpv8q8bypbc47wlfv"; depends=[cobs forecast ftsa mgcv rainbow RCurl strucchange]; };
-dendextend = derive { name="dendextend"; version="0.18.3"; sha256="1s6bdkibb066yima31sn8ddp8qrwyx2zc84wf2kixs37ynhw1xi1"; depends=[magrittr whisker]; };
+dendextend = derive { name="dendextend"; version="1.0.1"; sha256="1q2lhl1h1f9ga3anqcdhzksg8kqri6gwl9a8mjzs8yr17cs51ff6"; depends=[magrittr whisker]; };
 dendextendRcpp = derive { name="dendextendRcpp"; version="0.6.1"; sha256="125kjlfcj7y282j5g62c6j5hflvwngrm70waxym0lzr7xldwx7bk"; depends=[dendextend Rcpp]; };
 dendroextras = derive { name="dendroextras"; version="0.2.1"; sha256="0k1w374r4fvfcbzhrgcvklccjggyz755z7wc2vqfi3c5hvdb9ns4"; depends=[]; };
 dendsort = derive { name="dendsort"; version="0.3.2"; sha256="0qj65jraj6ksmsfsrc4f3y8m7x5lqg9bqc9yb5s3bav2r8qjyhv6"; depends=[]; };
@@ -3144,6 +3147,7 @@ depmix = derive { name="depmix"; version="0.9.13"; sha256="1dkwc1bjq19hjzichh78b
 depmixS4 = derive { name="depmixS4"; version="1.3-2"; sha256="18xmn5fv9wszh86ph91yypfnyrxy7j2gqrzzgkb84986fjp2sxlq"; depends=[MASS nnet Rsolnp]; };
 depth = derive { name="depth"; version="2.0-0"; sha256="1aj4cch3iwb6vz0bzj4w5r6jp2qs39g8lxi2nmpbi3m7a6qrgr2q"; depends=[abind circular rgl]; };
 depthTools = derive { name="depthTools"; version="0.4"; sha256="1699r0h1ksgrlz9xafw2jnqfsc7xs0yaw97fc6dv3r11x6gxk00y"; depends=[]; };
+dequer = derive { name="dequer"; version="1.0"; sha256="1xf2kl6ppgsplqwhxxyak39575bjijh81snq534yndf31pdqqhd7"; depends=[]; };
 descomponer = derive { name="descomponer"; version="1.2"; sha256="08hc3p4l8dy1h2z8ijifwlgidmac9b29g1k725yzwzbdr5jzvnzl"; depends=[taRifx]; };
 descr = derive { name="descr"; version="1.1.1"; sha256="1flnz05j390izwadsv2l5bcxgl6zmq4vzz1aycfifjz75zyqqy8s"; depends=[xtable]; };
 deseasonalize = derive { name="deseasonalize"; version="1.35"; sha256="1fjsa7g34dckjs6mx9b10m99byxagggm0p9pw2f1vmpjqlasin0l"; depends=[FitAR lattice]; };
@@ -3178,7 +3182,7 @@ difR = derive { name="difR"; version="4.6"; sha256="1803j0ql1g8gdy9i0wy4sz9sbl52
 diffEq = derive { name="diffEq"; version="1.0-1"; sha256="1xmb19hs0x913g45szmm26xx5xp85v182wqf0lnl4raxaf47yhkm"; depends=[bvpSolve deSolve deTestSet ReacTran rootSolve shape]; };
 diffIRT = derive { name="diffIRT"; version="1.4"; sha256="13axwzsrlr1akj4viwsyaplh11krixg3l07qi58c81jrcrmqpgv1"; depends=[statmod]; };
 diffdepprop = derive { name="diffdepprop"; version="0.1-9"; sha256="0mgrm1isr26v2mcm6fkzc7443ji00vpnqmw4zngx81n7442b3cl2"; depends=[gee PropCIs rootSolve]; };
-diffeR = derive { name="diffeR"; version="0.0-2"; sha256="1dkmwr6klqx950g9214n2rbd0p3k668w5217b0nvz6vfp3gczkjz"; depends=[ggplot2 raster rgdal]; };
+diffeR = derive { name="diffeR"; version="0.0-3"; sha256="0r1f39jh0jmlfvvzfvwr84g7xh9d6nkgqaq3kxdf66cggsxwnag4"; depends=[ggplot2 raster rgdal]; };
 diffractometry = derive { name="diffractometry"; version="0.1-8"; sha256="1m6cyf1kxm9xf1z4mn4iz0ggiy9wcyi8ysbgcsk7l78y7nqh1h99"; depends=[]; };
 diffusionMap = derive { name="diffusionMap"; version="1.1-0"; sha256="1l985q2hfc8ss5afajik4p25dx628yikvhdimz5s0pql800q2yv3"; depends=[igraph Matrix scatterplot3d]; };
 digest = derive { name="digest"; version="0.6.8"; sha256="0m9grqv67hhf51lz10whymhw0g0d98466ka694kya5x95hn44qih"; depends=[]; };
@@ -3186,7 +3190,7 @@ digitalPCR = derive { name="digitalPCR"; version="1.0"; sha256="0gjxlw0f2msh2x5j
 dils = derive { name="dils"; version="0.8.1"; sha256="1q6ba9j14hzf7xy895mzxc6n9yjgind55jf350iqscwzxf7ynp33"; depends=[igraph Rcpp]; };
 dinamic = derive { name="dinamic"; version="1.0"; sha256="0mx72q83bbwm10ayr3f1dzwr5wgz7gclw7rh39yyh95slg237nzr"; depends=[]; };
 diptest = derive { name="diptest"; version="0.75-7"; sha256="0rcgycgp0bf8vhga1wwgfcz3pqs5l26hgzsgf2f97dwfna40i1p1"; depends=[]; };
-directPA = derive { name="directPA"; version="1.1"; sha256="0sri3981vk997qjl3c3zchn3vx0h3pdbnagcvds4bnrpycvn4bz8"; depends=[calibrate rgl]; };
+directPA = derive { name="directPA"; version="1.2"; sha256="0wzmlahqcrb5f3hrlym5gs5wizmgvhndky7zvc98324bq645b56m"; depends=[calibrate rgl]; };
 directlabels = derive { name="directlabels"; version="2013.6.15"; sha256="083cwahz320r4w4jbh62pxmzn1i1hixp398zm8f2fpzh4qp5y44g"; depends=[quadprog]; };
 dirmult = derive { name="dirmult"; version="0.1.3-4"; sha256="1r9bhw1z0c1cgfv7jc0pvdx3fpnwplkxwz8j8jjvw14zyx803rnz"; depends=[]; };
 discSurv = derive { name="discSurv"; version="1.1.0"; sha256="0jj055w0m749fdd90cqlyklxnjxfjhly179lmg9xfl69w4xrjc2l"; depends=[caret functional Matrix matrixcalc mgcv mvtnorm numDeriv]; };
@@ -3196,8 +3200,7 @@ discreteMTP = derive { name="discreteMTP"; version="0.1-2"; sha256="13qsf1kc3rph
 discreteRV = derive { name="discreteRV"; version="1.2.1"; sha256="06gvfn5v54gbal7kpnfcxwaacbq8354yvc47kjipn29bqpw9b6mb"; depends=[MASS plyr]; };
 discretization = derive { name="discretization"; version="1.0-1"; sha256="00vq2qsssnvgpx7ihbi9wcafpb29rgv01r06fwqf9nmv5hpwqbmp"; depends=[]; };
 discrimARTs = derive { name="discrimARTs"; version="0.2"; sha256="088v4awic4bhzqcr7nvk2nldf8cm1jqshg2pzjd2l2p1cgwmlxib"; depends=[RUnit]; };
-diseasemapping = derive { name="diseasemapping"; version="1.2.0"; sha256="1l6w1f4zxfp1hrhvmxgijj2kwy7x0na2yf75ifqrbh1i499j8zjq"; depends=[sp]; };
-diskmemoiser = derive { name="diskmemoiser"; version="1.0-1"; sha256="0lacadc3mm1w55sff3lphp3xrr1inn2r382c1z8gf6kzal7c9pd8"; depends=[digest]; };
+diseasemapping = derive { name="diseasemapping"; version="1.2.3"; sha256="151z5w8k0s22hhp5795jf7lx1mhfxhqqg5skwxjrlkbn9yszjxpl"; depends=[sp]; };
 dismo = derive { name="dismo"; version="1.0-12"; sha256="1zm3z9z2ramsp85x96rrnmj5zabm8r7f0wfxrxg2sgddwwqvxpsv"; depends=[raster sp]; };
 disp2D = derive { name="disp2D"; version="1.0"; sha256="0q5bds2r1mqzcwmnj61dmwqv6b0s0scq5h3nim47q3wp0n4gbslz"; depends=[geometry]; };
 disparityfilter = derive { name="disparityfilter"; version="2.1"; sha256="0ld43hd4dr389pd8sncslp707jyfgbx7w1larq75gkzjykc29aqw"; depends=[igraph]; };
@@ -3231,7 +3234,7 @@ dlmap = derive { name="dlmap"; version="1.13"; sha256="0s6wlkggkm3qndwyvw72xv1n0
 dlmodeler = derive { name="dlmodeler"; version="1.4-2"; sha256="06gqvk2wrzz4kpsh4vyrbqwmxirsvg78qj7clvcxdac0sfqn4gl7"; depends=[KFAS]; };
 dlnm = derive { name="dlnm"; version="2.1.3"; sha256="044khdhk4dgd09cwmidsfa2rgd43h7wnd48bmmrnsvj3314bic0f"; depends=[nlme]; };
 dma = derive { name="dma"; version="1.2-2"; sha256="18v40rr4qx98ap38vr77xxvl7y3a6cqfky3z4s5zc87q6y1z5g2s"; depends=[MASS mnormt]; };
-dmm = derive { name="dmm"; version="1.6-1"; sha256="0bls3ka8fwnsd0v74ncy8nbgxk0a3z1gw9dgm3vibz1lsypfs72a"; depends=[MASS Matrix nadiv pls robustbase]; };
+dmm = derive { name="dmm"; version="1.6-2"; sha256="00wqa33n1zd6gbl658vrz07f6kkhbmdg8f3y9x9n3zq2ygnxrid1"; depends=[MASS Matrix nadiv pls robustbase]; };
 dmt = derive { name="dmt"; version="0.8.20"; sha256="0rwc8l9k2y46hslsb3y8a1g2yjxalcvp1l3v7jix0c5kz2q7917w"; depends=[MASS Matrix mvtnorm]; };
 dna = derive { name="dna"; version="1.1-1"; sha256="0gw70h1j67h401hdvd38d6jz71x1a6xlz6ziba6961zy6m3k5xbm"; depends=[]; };
 dnet = derive { name="dnet"; version="1.0.6"; sha256="0zhv2yfrlhfwjbgbvjzmw3c5g5rj33n8l2npdf6b4nqz0c0hc1jn"; depends=[Biobase graph igraph Matrix Rgraphviz supraHex]; };
@@ -3268,7 +3271,7 @@ drmdel = derive { name="drmdel"; version="1.3.1"; sha256="1bpm9jj9dxk2daxp1yb7pn
 dropR = derive { name="dropR"; version="0.1"; sha256="0sw5lqlfdn64dbykxdhk1pz18f83if871vkapa2nxgcfiy79b0vs"; depends=[plyr shiny]; };
 drsmooth = derive { name="drsmooth"; version="1.0"; sha256="1cxhj28dkll704kif040vqnp9grb61v891rswvyx7aa9216156px"; depends=[car clinfun DTK mgcv multcomp mvtnorm pgirmess segmented]; };
 ds = derive { name="ds"; version="3.0"; sha256="10xp575l0wh85wg32k3as02kgqm9ax9nx9i5kd5bkimfwg4qv745"; depends=[]; };
-dsample = derive { name="dsample"; version="0.91.1"; sha256="0nxx3x55zj089aq2shk7cg9bgh6xw7jnrr2qmlaq6bflwn58wn1q"; depends=[]; };
+dsample = derive { name="dsample"; version="0.91.1.5"; sha256="02ksm4d9ybz4w7j3c9rjqh262k6rqs1bdhj3p7w5rcaskpc6qz9s"; depends=[]; };
 dse = derive { name="dse"; version="2014.11-1"; sha256="0fl1av8zd0csbsk6fplcxgqsb50qr1baasw2jrqv6h83j2xwph2l"; depends=[setRNG tfplot tframe]; };
 dslice = derive { name="dslice"; version="1.1.4"; sha256="0srqw1kznbjl1v6dpgh7vsrpf9k3zj7j55zw9k50jsbw2z4xqzfw"; depends=[ggplot2 Rcpp scales]; };
 dsm = derive { name="dsm"; version="2.2.5"; sha256="0sfsfzcsqnvjkc5l7h5xq8p2jsgwxfzds75sqs58a0kzagcm1b05"; depends=[ggplot2 mgcv mrds nlme statmod]; };
@@ -3297,12 +3300,12 @@ dynlm = derive { name="dynlm"; version="0.3-3"; sha256="0ym23gv2vkvvnxvzk5kh6xy4
 dynsim = derive { name="dynsim"; version="1.0"; sha256="0w4brs8kcps6gkamkic57nj61iz7zdxq972jwzs17i43wfcrw32c"; depends=[ggplot2 gridExtra MASS]; };
 dynsurv = derive { name="dynsurv"; version="0.2-2"; sha256="0418r7adki48pg3h7i1mgv3xpbryi520va3jpd03dx15zrq8zaqg"; depends=[BH ggplot2 nleqslv plyr reshape survival]; };
 e1071 = derive { name="e1071"; version="1.6-4"; sha256="0hakqawy8bz4hvjzz9dbc2pbqhaf1qjsgl0agz3qfg63974whw2i"; depends=[class]; };
-eHOF = derive { name="eHOF"; version="1.5.8"; sha256="19zs0krz13m7rbiw72clnhh1rbb6qgzp85ndchqbparw7f9yji1s"; depends=[lattice mgcv]; };
+eHOF = derive { name="eHOF"; version="1.5.9"; sha256="187c85fp7q63ipqd3qzivlv9asm9zc49rvw33j39js03mak4r0d2"; depends=[lattice mgcv]; };
 eRm = derive { name="eRm"; version="0.15-5"; sha256="0g4avcr709brvzcbmqmq35c7zvgx1hkf5nq6djsprzkgvh6rznjn"; depends=[lattice MASS Matrix]; };
 eVenn = derive { name="eVenn"; version="2.2"; sha256="0k6m61z902spxxrc38504l73h022w5v74g39h4azd1ibr35yrl7j"; depends=[]; };
 eaf = derive { name="eaf"; version="1.07"; sha256="0310lrqfm1l0lifak7wa6xn21bzzn27kbrrx0bidj4hibwv7sa4l"; depends=[modeltools]; };
 earlywarnings = derive { name="earlywarnings"; version="1.0.59"; sha256="06j5g5lrzl4p5pb1pp79h00iqpbwralzhpzxmaiymv7j8kz87nr0"; depends=[fields ggplot2 Kendall KernSmooth lmtest moments nortest quadprog som spam tgp tseries]; };
-earth = derive { name="earth"; version="4.4.0"; sha256="1dsqyp93z8a2afvnhms4453cmhn7zbqf5fy18sl43gn616miarpv"; depends=[plotmo TeachingDemos]; };
+earth = derive { name="earth"; version="4.4.2"; sha256="0sdv779j6vd19g5kjzv4aad08pgc9zzdcjah9a2a4dzmkl7grapi"; depends=[plotmo TeachingDemos]; };
 easyanova = derive { name="easyanova"; version="4.0"; sha256="1d8fkgyqzphipvla7x8ipcf0by07iqx8xran15d2q82yq9iik5g9"; depends=[car nlme]; };
 easynls = derive { name="easynls"; version="4.0"; sha256="1j2crqvgsf84bpwzf4qh5xkzn5mhxhfx9c0y3p8dbyn8bg7zc2rf"; depends=[]; };
 ebGenotyping = derive { name="ebGenotyping"; version="1.0"; sha256="07dpvxl9xspkzvzkywclg8whgcw7vyakls38pshfypjpyd6iv8ga"; depends=[]; };
@@ -3310,7 +3313,7 @@ ebSNP = derive { name="ebSNP"; version="1.0"; sha256="0x3ijwg4yycsfy6jch1zvakzfv
 eba = derive { name="eba"; version="1.7-1"; sha256="0kxdhl7bc4f570m9rbxxzg748zvq0q7a0slvfr4w1f45vfzhyh17"; depends=[nlme]; };
 ebal = derive { name="ebal"; version="0.1-6"; sha256="1cpinmbrgxxv0fzi9qi2inv4hw2lz7iq4b0ggp316rdqqb5bj9r0"; depends=[]; };
 ebdbNet = derive { name="ebdbNet"; version="1.2.3"; sha256="123iqp8rnm3pac5fvpzq5sqbf8nyfpf05g23nawanid6yv23ba9a"; depends=[igraph]; };
-ecespa = derive { name="ecespa"; version="1.1-7"; sha256="0ynyphc1jnk088041i0yk22bh4ga1v9xwrcghy70q1ipv0z279ph"; depends=[spatstat splancs]; };
+ecespa = derive { name="ecespa"; version="1.1-8"; sha256="0rdjr0ss7a1n66dmvykbs3x944r88l08md2rfkg9w7bxm361ib8p"; depends=[spatstat splancs]; };
 ecipex = derive { name="ecipex"; version="1.0"; sha256="0pzmrpnis52hvy80p3k60mg9xldq6fx8g9n3nnqi3z56wxmqpdv7"; depends=[CHNOSZ]; };
 eco = derive { name="eco"; version="3.1-7"; sha256="0qrl1mq0nc42j4dzqhayzzb56gmkk479wgpxikzgzpj9wv78yd5s"; depends=[MASS]; };
 ecodist = derive { name="ecodist"; version="1.2.9"; sha256="199f3lwwm8r2bnik595m540la1p4z6vbkwfqh9kimy9d0fjp8nps"; depends=[]; };
@@ -3344,7 +3347,7 @@ eigenmodel = derive { name="eigenmodel"; version="1.01"; sha256="0p9n28x5gg46nsz
 eigenprcomp = derive { name="eigenprcomp"; version="1.0"; sha256="156qyv7sl8nng55n3ay6dnpayyfrqv27ndz40xf4w92is9zmymy0"; depends=[]; };
 eive = derive { name="eive"; version="2.1"; sha256="1vazl5dnrvljd07csy9rjs4302w09h94i411gffg9fvxn70km7qg"; depends=[Rcpp]; };
 eiwild = derive { name="eiwild"; version="0.6.7"; sha256="1fp4kvlmcjjnzn2a5cmlzaf6y5q6cdbbi2nmvjyqc4y1bmwh3srf"; depends=[coda gtools lattice]; };
-elastic = derive { name="elastic"; version="0.4.0"; sha256="03cj0vljad4bkz7zmlp7cr6y734pddngmlzwa1h4ja1nr8nv8xf4"; depends=[httr jsonlite RCurl]; };
+elastic = derive { name="elastic"; version="0.5.0"; sha256="1riivxrzd5cxb81kj0xjp7vli63ds6s8ybbg3sbhjmkcvpyxsylz"; depends=[curl httr jsonlite]; };
 elasticnet = derive { name="elasticnet"; version="1.1"; sha256="1x8rwqb275lz86vi044m1fy8xanmvs7f7irr1vczps1w45nsmqr2"; depends=[lars]; };
 elec = derive { name="elec"; version="0.1.2"; sha256="0f7ahrjb52w8a8l5v00xla6z9afpz2zrckl9v04xalp34snhdwan"; depends=[]; };
 elec_strat = derive { name="elec.strat"; version="0.1.1"; sha256="09196k5c3jsikh98d33bn70izwcbx0wb5ki9fv1ij0dw9mnv4c3p"; depends=[elec]; };
@@ -3355,7 +3358,6 @@ elmNN = derive { name="elmNN"; version="1.0"; sha256="129r6d3qa48gqvqxks53hdmyk3
 elrm = derive { name="elrm"; version="1.2.2"; sha256="0wz0l703v0iyp7nswdmh65n0cy3a7rfvyxd795a6nzk3nich8bfg"; depends=[coda]; };
 emIRT = derive { name="emIRT"; version="0.0.5"; sha256="0n94iqdzbml0hx3gd046958vmv3y0hymj5kly53gvvlcidsn15c4"; depends=[pscl Rcpp RcppArmadillo]; };
 embryogrowth = derive { name="embryogrowth"; version="6.0"; sha256="0l08imqagn2w1q8s4f84bb1zlc17zjkfc5qz1gpmqc7dbw9nvxph"; depends=[coda deSolve HelpersMG polynom]; };
-emdatr = derive { name="emdatr"; version="0.3"; sha256="1ccm45al90wa467n19dqs33q2w74in4qnwdrsh94g3d67cw5fsfc"; depends=[RCurl]; };
 emdbook = derive { name="emdbook"; version="1.3.8"; sha256="10qmppacfww8wg1hhd9fpadrvrivrvfgfn1qgm87xlf3a8jpffjj"; depends=[bbmle coda lattice MASS plyr rgl]; };
 emdist = derive { name="emdist"; version="0.3-1"; sha256="1z14pb9z9nkd0f2c8pln4hzkfqa9dk9n3vg8czc8jiv0ndnqi7rq"; depends=[]; };
 emg = derive { name="emg"; version="1.0.6"; sha256="1kzmxs224m6scmk8gg5ckx5c7is99hwgwv28yl26hnrbkm59skyh"; depends=[]; };
@@ -3368,13 +3370,12 @@ empiricalFDR_DESeq2 = derive { name="empiricalFDR.DESeq2"; version="1.0.3"; sha2
 emplik = derive { name="emplik"; version="1.0-1"; sha256="1kwgikdnxh52wsmzrzqv7sp8s55w9q40aq9kpfd3zshkflx7w8g1"; depends=[quantreg]; };
 emplik2 = derive { name="emplik2"; version="1.20"; sha256="0qdsfmnvds01qa4f112knv905k0fzccrqj9fwaqrqcy48cigm8pd"; depends=[]; };
 emulator = derive { name="emulator"; version="1.2-15"; sha256="1rp7q7zs8b49jzdkbzm4s1g8554h41hcabf4d78k9jhhys2z28g2"; depends=[mvtnorm]; };
-enRich = derive { name="enRich"; version="2.0"; sha256="13ahwdifm33h4h5mvmc49v39fbhiy291rbdwm4c8kxjrqjq9ip66"; depends=[]; };
 enaR = derive { name="enaR"; version="2.8.1"; sha256="1p2vhqd1zxwar5fb16ibvwrzrxl7c574ls6747bkdjzlx7vznrn1"; depends=[gdata MASS network sna stringr]; };
 endogMNP = derive { name="endogMNP"; version="0.2-1"; sha256="0maxcp321ngbxrg0i23nlwhj849v771xahh53367x928ss4f8v7i"; depends=[]; };
 endorse = derive { name="endorse"; version="1.4.1"; sha256="0xyi2cq4k4xa8kr717i4njl6rgjf5z99056jbhp2rbzfyy4sw61d"; depends=[coda]; };
 energy = derive { name="energy"; version="1.6.2"; sha256="008yf4r6546mzk9q515zliqxyjx6w0z19g5wlarg7f4lrzsmqiaw"; depends=[boot]; };
 english = derive { name="english"; version="1.0-1"; sha256="1413axjp2icj9wwnkz3vl4gvrwlgmjpc2djzv5bllbnc4a4dgj24"; depends=[]; };
-enigma = derive { name="enigma"; version="0.1.1"; sha256="1309w9nwh7kd1iivj5kq6sgi10k9ac69n3yl6a52ajqnm9rsg3lm"; depends=[httr jsonlite plyr]; };
+enigma = derive { name="enigma"; version="0.2.0"; sha256="0a45fp9lmxrdwpa7y3sfbgcijw5ss2fz7j2r7qnc0ask1x4yfqr4"; depends=[httr jsonlite plyr]; };
 enpls = derive { name="enpls"; version="1.0"; sha256="1grnabrb0kzjvjvwp9rx1xqfljla0jd5xrkcbwfzmy2ymmbvh6ma"; depends=[doParallel foreach pls]; };
 enrichvs = derive { name="enrichvs"; version="0.0.5"; sha256="0x91s03hz1yprddm6mqi75bm45ki3yapfrxmap7d4qc0hi06h22k"; depends=[]; };
 ensembleBMA = derive { name="ensembleBMA"; version="5.1.2"; sha256="0cfasrs1paz60na8by9zk0c5jc48l9djvn6c64ygjl1rapz389d4"; depends=[chron]; };
@@ -3385,7 +3386,7 @@ entropy = derive { name="entropy"; version="1.2.1"; sha256="10vg4818q5g54pv2nn9x
 enviPat = derive { name="enviPat"; version="2.0"; sha256="10fzzwlcmrfcppsj06pma8jkp5pfrb2ys70ggb9q4frc5irg5lha"; depends=[]; };
 enviPick = derive { name="enviPick"; version="1.3"; sha256="01wkijvhr8wqjzrhgkvxbnnmb9qsnq0lhkgw93s8nrf8yr3z3awj"; depends=[readMzXmlData shiny]; };
 epade = derive { name="epade"; version="0.3.8"; sha256="1alvsifc6i71ilm1xxs1d7sqlapb48bqd6z2n4wi6pqcjvwp7bif"; depends=[plotrix]; };
-epi2loc = derive { name="epi2loc"; version="1.0-1"; sha256="16abk1v177sg7gmaw42ldf6hf20l7dvyq295zwbq76nxj467khdv"; depends=[pwr]; };
+epiDisplay = derive { name="epiDisplay"; version="3.2.0.6"; sha256="1agqv4b33cdyan29vv63q7jd9z4f2c9klzd6vqiaj7amahkkhgfl"; depends=[foreign MASS nnet survival]; };
 epiR = derive { name="epiR"; version="0.9-62"; sha256="04r0inaa04pc4nj5dippl2qxa4nysk0sabdgp4bzp5zxw33mf55v"; depends=[survival]; };
 epibasix = derive { name="epibasix"; version="1.3"; sha256="0d0087sa8lqw35pn7gdg2qqzw3dvz57sgavymwl1ybcj5d4lsbyk"; depends=[]; };
 epinet = derive { name="epinet"; version="2.0.9"; sha256="071svl1zcjjb3gvk3vg8xf660bvlz0ypkxy88n3d3f3ir2k26s7b"; depends=[]; };
@@ -3402,13 +3403,12 @@ equivalence = derive { name="equivalence"; version="0.6.0"; sha256="1q17c2bs36f4
 erboost = derive { name="erboost"; version="1.2"; sha256="0afgh0zkl3h3ab4s7wl0cn24qdyhszssai9i390mi7w0p88wgba9"; depends=[lattice]; };
 erer = derive { name="erer"; version="2.3"; sha256="165hngfzbzn403gwdcjkhvlm7jygl57nbpwdmlya2rd43z09kp77"; depends=[ggplot2 lmtest systemfit tseries urca]; };
 ergm = derive { name="ergm"; version="3.4.0"; sha256="1qyj4b22d998qky0rv1h9h0r33vdwr7lw7gpkvbgzf5d44yng33b"; depends=[coda lpSolve Matrix network robustbase statnet_common trust]; };
-ergm_count = derive { name="ergm.count"; version="3.1.1"; sha256="0l66shy5p7h9j3h5gpkn48ps069mdaqbscnnkvmwjfvcc7k5vr8m"; depends=[ergm network statnet_common]; };
+ergm_count = derive { name="ergm.count"; version="3.2.0"; sha256="0qrldigkygr8k8v3njy0pclgv7z64dazknpf0m567i1nz8715yhy"; depends=[ergm network statnet_common]; };
 ergm_graphlets = derive { name="ergm.graphlets"; version="1.0.3"; sha256="0xk45ialjckvjs96k19skk7imilcahgyzfwc74h6yand5q3mg6fz"; depends=[ergm network statnet_common]; };
 ergm_userterms = derive { name="ergm.userterms"; version="3.1.1"; sha256="0pvklvyxi7sjc5041zl8vcisni0jz1283gyjw5mhas9bl47g1cwc"; depends=[ergm network statnet_common]; };
 ergmharris = derive { name="ergmharris"; version="1.0"; sha256="1bfijhsljlykb94wi25lbpv35zkmgqpmgzmxcq98gjvzbn5j9pdq"; depends=[]; };
 erpR = derive { name="erpR"; version="0.2.0"; sha256="1y6abc5fkcyyjh36maj1zbxppqzwd5wkvzvqahyvzsz5fqpjkcdx"; depends=[rpanel]; };
 esaBcv = derive { name="esaBcv"; version="1.2.1"; sha256="0hgjcdbiy1a71vsb2vcyp0xmhy6wi4nlh1sqsfb2vxckc95i9i21"; depends=[corpcor svd]; };
-esotericR = derive { name="esotericR"; version="1.0"; sha256="0kl9c2z2mpg3mk8jnl0ssgcf6y0i9jpczms746j8f07ydrcxpf41"; depends=[]; };
 estimability = derive { name="estimability"; version="1.1"; sha256="1inw2ir83bzz40gynwfcjzx7f6v99pqlphq7p3rmql01ikd2b6r9"; depends=[]; };
 estout = derive { name="estout"; version="1.2"; sha256="0whrwlh4kzyip45s4zifj64mgsbnrllpvphs6i5csb7hi3mdb3i5"; depends=[]; };
 etable = derive { name="etable"; version="1.2.0"; sha256="17xahaf2fz1qgqjaw8qbnss95il6g47m3w00yqc5nkvv37gs0q7c"; depends=[Hmisc xtable]; };
@@ -3427,14 +3427,13 @@ evmix = derive { name="evmix"; version="2.6"; sha256="1rc52mqmzl05n5n1lr990czqgp
 evobiR = derive { name="evobiR"; version="1.0"; sha256="12j01qzc4yrjpxbj39bl29f5ypxwk33c6qf0mjjbgpwn5g6fgsi4"; depends=[ape geiger seqinr stringr taxize]; };
 evolqg = derive { name="evolqg"; version="0.1-5"; sha256="1s9jh14ycymlajc285cczr9m529vv6la4bkv0lgk3dc0557m7q5w"; depends=[ape ggplot2 magrittr mvtnorm phytools plyr Rcpp reshape2 tidyr vegan]; };
 evolvability = derive { name="evolvability"; version="1.1.0"; sha256="0lbyidb86yzvcfw86jfwnzbpijn64jr8fasycqq4h3r9c0x2by3j"; depends=[coda]; };
-evora = derive { name="evora"; version="1.0"; sha256="0blq28ldynbq3v6rh0yk89wy1sjp4621h6iwnyyiipqwzihwrhz2"; depends=[Hmisc qvalue]; };
 evt0 = derive { name="evt0"; version="1.1-3"; sha256="08sbyvx49kp3jsyki60gbbnci26d6yk0yj2zcl4bhfac8c3mm6ya"; depends=[evd]; };
 evtree = derive { name="evtree"; version="1.0-0"; sha256="0i37lkdfzvgby98888ndd5wzxs7y11sxf9mh6pqpqgwif05p4z3i"; depends=[partykit]; };
-exCon = derive { name="exCon"; version="0.1.5"; sha256="08gq257qp814960ykp16qdk9xpc7ag9mxs1qhnnzlk1v2cnhilaq"; depends=[jsonlite]; };
+exCon = derive { name="exCon"; version="0.1.9"; sha256="0nqnr21rhhb41nqg55fjhv17qmgjz32hl9yq4gzwihjvb53xkf0z"; depends=[jsonlite]; };
 exact2x2 = derive { name="exact2x2"; version="1.4.1"; sha256="1a4cg8j8kdgwkj27qza6xm5x16m9sb2vczb1b9im8k4pas6v6jpk"; depends=[exactci ssanv]; };
 exactLoglinTest = derive { name="exactLoglinTest"; version="1.4.2"; sha256="0j146ih9szzks9r45vq1jf47hrwjq081q1nsja5h1gpllks8217h"; depends=[]; };
 exactRankTests = derive { name="exactRankTests"; version="0.8-28"; sha256="1n6rr0wax265y9w341x7m2pqwx3cv8iqx1k5qla29z8lqn4ng1nd"; depends=[]; };
-exactci = derive { name="exactci"; version="1.3-0"; sha256="03mhgpyrgm3cb0hw908wxhi6pxrvcsw4r1lmbx95xn44j1p9zpzk"; depends=[ssanv]; };
+exactci = derive { name="exactci"; version="1.3-1"; sha256="1mhigk1nzd24qhzgd1j96zlf38dr96c1y5jbmy6lz2sw7g4mmvgm"; depends=[ssanv]; };
 exactmeta = derive { name="exactmeta"; version="1.0-2"; sha256="1v807ns799qajffky4k18iah0s3qh2ava6sz5i85hwx9dhkz19h4"; depends=[]; };
 exams = derive { name="exams"; version="2.0-2"; sha256="1cv01wa3zs31zdc1qk6rsnimbs6m31r0j56syg6yjicfxiwxxm0v"; depends=[]; };
 excursions = derive { name="excursions"; version="2.0.16"; sha256="10z0mix7fx4pb9jpix5d00ch4i6jlvj2337s6ja916q6cczj21qr"; depends=[Matrix sp spam]; };
@@ -3455,7 +3454,6 @@ extfunnel = derive { name="extfunnel"; version="1.3"; sha256="162w5b2wjs3yqy8jis
 extlasso = derive { name="extlasso"; version="0.2"; sha256="05774y0i01lrbyws6zx5ymhcglllv1wc7gzrnyx8i5d1lxdinsyd"; depends=[]; };
 extraBinomial = derive { name="extraBinomial"; version="2.1"; sha256="0qmvl35f7n78kghszwyaz4wzbswqy4p98c3b6alzrc2ldsq6pq5z"; depends=[]; };
 extraTrees = derive { name="extraTrees"; version="1.0.5"; sha256="1rvvp2p9j8ih8fid1n17606pa23bjg3i2659w1l6w0jkb1p23zcx"; depends=[rJava]; };
-extracat = derive { name="extracat"; version="1.7-1"; sha256="1vgxr9j812jjr0i188vv7c1l0d7b73aakvfgsm0agwv7vj8k0rhi"; depends=[colorspace ggplot2 hexbin plyr reshape2 scales TSP]; };
 extrafont = derive { name="extrafont"; version="0.17"; sha256="0b9k2n9sk23bh45hjgnkxpjyvpdrz1hx7kmxvmb4nhlhm1wpsv9g"; depends=[extrafontdb Rttf2pt1]; };
 extrafontdb = derive { name="extrafontdb"; version="1.0"; sha256="115n42hfvv5h4nn4cfkfmkmn968py4lpy8zd0d6w5yylwpzbm8gs"; depends=[]; };
 extremevalues = derive { name="extremevalues"; version="2.3.0"; sha256="1nn67kgf3qd41nmizkbc2cy3128kajsxbxg03fhfgkjdqa0781lq"; depends=[gWidgets gWidgetstcltk]; };
@@ -3527,7 +3525,7 @@ fdasrvf = derive { name="fdasrvf"; version="1.4.2"; sha256="12x04fi0sxs9yh1mf9iy
 fdatest = derive { name="fdatest"; version="2.1"; sha256="0zdnmssir5jz2kbfz4f4xshjfv4pivqx7cbh2arlx6ypkjrjws8n"; depends=[fda]; };
 fdrDiscreteNull = derive { name="fdrDiscreteNull"; version="1.0"; sha256="1388a9hjbgblmhx5f3ddk16kigzsik9bvw179d1szk33kadfq2vp"; depends=[edgeR MCMCpack]; };
 fdrci = derive { name="fdrci"; version="2.0"; sha256="0smyl9phl02wghimawvff3h267w3h213jbqpka155i6cfzig9qjy"; depends=[]; };
-fdrtool = derive { name="fdrtool"; version="1.2.14"; sha256="0q4mxm3vxhvxxbkgl9vxs3q93icipg9hz7qcr4vas8cks1hmzbdw"; depends=[]; };
+fdrtool = derive { name="fdrtool"; version="1.2.15"; sha256="1h46frlk7d9f4qx0bg6p55nrm9wwwz2sv6d1nz7061wdfsm69yb5"; depends=[]; };
 fds = derive { name="fds"; version="1.7"; sha256="164f2cbywph7kyn712lfq4d86v22j4y3fg5i9zyz956hipqv0qvw"; depends=[rainbow RCurl]; };
 fdth = derive { name="fdth"; version="1.2-1"; sha256="0rr9p2rns5ws111iqcicrlpcv47fkbxf161yxkkzfs2l3f1kgw14"; depends=[]; };
 feature = derive { name="feature"; version="1.2.11"; sha256="0dgiv9gwyklnw8w0cpchakadc1vqcngjg39cha6gvl2i3csgxz4p"; depends=[ks misc3d rgl]; };
@@ -3563,9 +3561,9 @@ fit_models = derive { name="fit.models"; version="0.5-10"; sha256="06pj26dbnq6mf
 fit4NM = derive { name="fit4NM"; version="3.3.3"; sha256="0k2194521yby6xxi77bpjp6ywz8kpnzws217m7n0hw6xwz5mqj1g"; depends=[cairoDevice gWidgets gWidgetsRGtk2 RGtk2 tkrplot]; };
 fitDRC = derive { name="fitDRC"; version="1.1"; sha256="1f6avw8ia9ks17zdagpmh6yvcmi53h5cvm0wwv9hsb92x5zfhxn9"; depends=[]; };
 fitTetra = derive { name="fitTetra"; version="1.0"; sha256="0ia6wk4gicpmn6kclsd28p7v1npwfv2blagiz0cxzwfw3njv103g"; depends=[]; };
-fitbitScraper = derive { name="fitbitScraper"; version="0.1.3"; sha256="0fh8qm4ws9idx0868rda7v1cs8g61q8zdx1ncyxijbvijhdslfgj"; depends=[httr RJSONIO stringr]; };
+fitbitScraper = derive { name="fitbitScraper"; version="0.1.4"; sha256="0shbi5mmr9fw3cc2hn1yzd1ma9kid53ria9pbfkz1pk81n75krj1"; depends=[httr RJSONIO stringr]; };
 fitdistrplus = derive { name="fitdistrplus"; version="1.0-4"; sha256="02ds5vmxc3rk50c33rxdnpqf2hbx186ss6br29n6538q7734nra9"; depends=[survival]; };
-flam = derive { name="flam"; version="1.0"; sha256="0jyx0wff5zdpnhgxz74k6fxgwdnl7khanahv63af22y0mqpd066f"; depends=[MASS]; };
+flam = derive { name="flam"; version="2.0"; sha256="10pzjdymcxm5yfqgqc2n99j986585ndxccpfvr4jilq4asf3iiaq"; depends=[MASS Rcpp]; };
 flare = derive { name="flare"; version="1.5.0"; sha256="03bq40lwwq49vvbarf37y7c3smm29mxqfxsc66gkg8l5pak4l38i"; depends=[igraph lattice MASS Matrix]; };
 flashClust = derive { name="flashClust"; version="1.01-2"; sha256="0l4lpz451ll7f7lfxmb7ds24ppzhfg1c3ypvydglcc35p2dq99s8"; depends=[]; };
 flexCWM = derive { name="flexCWM"; version="1.5"; sha256="1q6nkw6al56wc53sj719c94iv20a9a82pq4s62jnb2flq1pwdaml"; depends=[adehabitat ellipse Flury MASS mclust mixture mnormt numDeriv statmod]; };
@@ -3586,17 +3584,17 @@ fmt = derive { name="fmt"; version="1.0"; sha256="13gsywnyvf9zy5n644g2xyd60f92w2
 foba = derive { name="foba"; version="0.1"; sha256="1af8whgl66v0vwzdf03b6141k3dysdc0svymlgifcga5gqkwzsl0"; depends=[]; };
 fontcm = derive { name="fontcm"; version="1.1"; sha256="1z6b4qdgj5vhvjqj90sm1hp0fffi1vxzvq71p0flxybzyb7d15la"; depends=[]; };
 foodweb = derive { name="foodweb"; version="1-0"; sha256="1zm2a87g9bkpz90j9lax28s5hq1w7ia28qqb6vnvr1d7a47g9zi9"; depends=[rgl]; };
-forams = derive { name="forams"; version="2.0-4"; sha256="1kvxlqdyzb3rqa45hp7jxjm009w0r6h78nr3yh9bqcz594zqidbq"; depends=[vegan]; };
+forams = derive { name="forams"; version="2.0-5"; sha256="1fh3m9896ksv1h7b027yb955bzyv70yafhqvn5crkzalzk3jpb0s"; depends=[vegan]; };
 foreach = derive { name="foreach"; version="1.4.2"; sha256="097zk7cwyjxgw2i8i547y437y0gg2fmyc5g4i8bbkn99004qzzfl"; depends=[codetools iterators]; };
 forecTheta = derive { name="forecTheta"; version="1.0"; sha256="1ip6l27d37xqnmg8w285lq1y5j6akrjrviq4338c8sq075d8hckn"; depends=[forecast]; };
 forecast = derive { name="forecast"; version="6.1"; sha256="1hwv3arcpkkhpj5n2dvpw2fyx687b6x6yakxx55cw9rrka70rx1k"; depends=[colorspace fracdiff nnet Rcpp RcppArmadillo timeDate tseries zoo]; };
-foreign = derive { name="foreign"; version="0.8-63"; sha256="1g5hl8drcmh2c9kpkr4443nw7dsxjwqsqs1q4bnhvw2lizs8bfb2"; depends=[]; };
+foreign = derive { name="foreign"; version="0.8-65"; sha256="03zg48vjqqcq9ri4a53czpyp82hml409g2rmdnmbfw8c1isdqacf"; depends=[]; };
 forensic = derive { name="forensic"; version="0.2"; sha256="0kn8wn6p3fm67w88fbarg467vfnb42pc2cdgibs0vlgzw8l2dmig"; depends=[combinat genetics]; };
 forensim = derive { name="forensim"; version="4.3"; sha256="1jhlv9jv832qxxw39zsfgsf4gbkpyvywg11djldlr9vav7dlh3iw"; depends=[tcltk2 tkrplot]; };
-forestFloor = derive { name="forestFloor"; version="1.4"; sha256="152b5pq9901bdik3dqmn4gb0aiyl8zf8mg88d8xnz839aildp2fw"; depends=[kknn randomForest Rcpp rgl trimTrees]; };
+forestFloor = derive { name="forestFloor"; version="1.5"; sha256="1cpgjj2p4j14h2ks586nq8426k9nlnnwhnxniaack33rdy3axbdp"; depends=[kknn Rcpp rgl trimTrees]; };
 forestplot = derive { name="forestplot"; version="1.1"; sha256="1h28lwqdizs450bm5hb8zfbmx633n8v5bj2p8mi4cl814sjjylr0"; depends=[]; };
 formatR = derive { name="formatR"; version="1.2"; sha256="0dlj728qdm7wmxcxvw1ip64pl4ajgmi8ax69zafrn3306pg9y136"; depends=[]; };
-formula_tools = derive { name="formula.tools"; version="1.5.2"; sha256="1n2rw9zhrgcsjxrm108fs7sysk9jk1gmq0jmg9s7pm7ff76insnj"; depends=[operator_tools]; };
+formula_tools = derive { name="formula.tools"; version="1.5.4"; sha256="1qs7ls757qvh5gdkx32zslgpx1a4zk2vf8bbgjdax02jmlyp2qrp"; depends=[operator_tools]; };
 fortunes = derive { name="fortunes"; version="1.5-2"; sha256="1wv1x055v388ay4gnd1l8y6dgvamyfvmsd0ik9fziygwsaljb049"; depends=[]; };
 forward = derive { name="forward"; version="1.0.3"; sha256="0swn5ysp3f660kl9jpmkck9324j1g3yhj2hl238rfrcr5wihxifc"; depends=[MASS]; };
 fossil = derive { name="fossil"; version="0.3.7"; sha256="188hyb3r1dnxkmqf2czh1kdzmk4mjc0v1kn1zml2yvxaxk7adsrz"; depends=[maps shapefiles sp]; };
@@ -3619,7 +3617,7 @@ freeknotsplines = derive { name="freeknotsplines"; version="1.0"; sha256="19zs42
 freestats = derive { name="freestats"; version="0.0.3"; sha256="0b18n8idap089gkmjknzzb94dvs2drpdqs0mrw7dqnacxgbbqwfj"; depends=[MASS mvtnorm]; };
 freqMAP = derive { name="freqMAP"; version="0.2"; sha256="02hpkqqrxifrr1cxn5brp166jwa8lgl1mcgmq7s8csrbbd900ziv"; depends=[]; };
 freqparcoord = derive { name="freqparcoord"; version="1.0.0"; sha256="0hn5y10yp3j76lqrmj6dsaafamgy4pfxx1p4y92z17s79x29j59q"; depends=[FNN GGally ggplot2 mvtnorm]; };
-freqweights = derive { name="freqweights"; version="1.0.1"; sha256="13wy8nzs888yn7ld96qq3p7k3xjn6s38qdlfb3nqmh52daqcnn7m"; depends=[biglm data_table dplyr FactoMineR fastcluster plyr]; };
+freqweights = derive { name="freqweights"; version="1.0.2"; sha256="183x94j727z6phayy0zy9q4x5fnww8h51ghpmc6jbwc5r40vp4px"; depends=[biglm data_table dplyr FactoMineR fastcluster plyr]; };
 frm = derive { name="frm"; version="1.2.2"; sha256="1dl0vca9r2dams99sc13pfpi0b3yb02x59f4c1jz07zz005c8l23"; depends=[]; };
 frmhet = derive { name="frmhet"; version="1.1.2"; sha256="1a6q5qz22b4sx5l1jz50x1q3bz8sj91dj2cahq28h6ss5b8vfn0y"; depends=[]; };
 frmpd = derive { name="frmpd"; version="1.0.1"; sha256="104frdraawj8g76589kz4csbgzkvs4rgdhgwmb77srhqp5nc8v96"; depends=[]; };
@@ -3642,14 +3640,15 @@ funHDDC = derive { name="funHDDC"; version="1.0"; sha256="038m64yv27wz7ki2gcn94q
 functional = derive { name="functional"; version="0.6"; sha256="120qq9apg6bf39n9vnp68db5rdhwvnj2vi12a8j8243vq8kqxdqr"; depends=[]; };
 funreg = derive { name="funreg"; version="1.1"; sha256="1sxr4mylcpbya197d55yi6d7g5pfspaf59xxbwjgmwgjw06rl76r"; depends=[MASS mgcv mvtnorm]; };
 funtimes = derive { name="funtimes"; version="1.1"; sha256="0z478b57l7hg8b42jyzcdjzs3nn62m2y117xmgbw1gbyf3rcnjkw"; depends=[Jmisc]; };
-futile_any = derive { name="futile.any"; version="1.3.0"; sha256="1c7pj64kz09qzwrxvkp1w1w8mvxwq36zkj6w4b7yyi8v7x3daq2a"; depends=[lambda_r]; };
+futile_any = derive { name="futile.any"; version="1.3.2"; sha256="09z12dlj7cnkfwnmgsjknsghirv1cry83w4a9k4d0w5a1jnlr5jg"; depends=[lambda_r]; };
 futile_logger = derive { name="futile.logger"; version="1.4.1"; sha256="1plld1icxrcay7llplbd4i8inpg97crpnczk58mbk26j8glqbr51"; depends=[futile_options lambda_r]; };
 futile_matrix = derive { name="futile.matrix"; version="1.2.2"; sha256="1cb975n93ck5fma0gvvbzainp7hv3nr8fc6b3qi8gnxy0d2i029m"; depends=[futile_logger lambda_r lambda_tools RMTstat]; };
 futile_options = derive { name="futile.options"; version="1.0.0"; sha256="1hp82h6xqq5cck67h7lpf22n3j7mg3v1mla5y5ivnzrrb7iyr17f"; depends=[]; };
 futile_paradigm = derive { name="futile.paradigm"; version="2.0.4"; sha256="14xsp1mgwhsawwmswqq81bv6jfz2z6ilr6pmnkx8cblyrl2nwh0v"; depends=[futile_options RUnit]; };
+future = derive { name="future"; version="0.6.0"; sha256="14lsjay59xfdhqhdyz7v2qkwx5zd8hbkgq6l6vnihvm48rzsdg8v"; depends=[globals listenv]; };
 fuzzyFDR = derive { name="fuzzyFDR"; version="1.0"; sha256="0zd8i9did0d9gp42xjmwrccm32glabvvy08kl8phhwb1yaq53h7w"; depends=[]; };
 fuzzyMM = derive { name="fuzzyMM"; version="1.0.1"; sha256="1pqfc9b9l2xx5pl45hfildikqjsdgqfhqzi2nbb34026nla5m8vk"; depends=[frbs igraph osmar rgdal rgeos]; };
-fuzzyRankTests = derive { name="fuzzyRankTests"; version="0.3-5"; sha256="1g09506bbpk05a2r2wxjynjs8dmjd2q7x74d83vjscg1kdk4kazq"; depends=[]; };
+fuzzyRankTests = derive { name="fuzzyRankTests"; version="0.3-7"; sha256="0mhml0zzya58yn4wrafxk62agfrck6rryn5klprr416pj83pzcgk"; depends=[]; };
 fwdmsa = derive { name="fwdmsa"; version="0.2"; sha256="0p0kh8am6gajfaixkvq61f12hfbm6chl9372yzn1yilhiyvqdxgp"; depends=[]; };
 fwi_fbp = derive { name="fwi.fbp"; version="1.5"; sha256="08ngg70vi2fca5yblm2gf1lkjjmb6m39d8q6429n7i3jn6ca5nzf"; depends=[]; };
 fwsim = derive { name="fwsim"; version="0.3.3"; sha256="1ix4sl2krlr0b0wfgvy73qhpmkjymqcci3q3v60j20zapi55gxn2"; depends=[Rcpp]; };
@@ -3685,7 +3684,7 @@ gamboostMSM = derive { name="gamboostMSM"; version="1.1.87"; sha256="0if0x92lch5
 gamclass = derive { name="gamclass"; version="0.55"; sha256="0nhy1qdc221hsnby8j0m2a4x4a8qwfixbaq4gd22rn1xpbsdnfw3"; depends=[ape car DAAG KernSmooth lattice latticeExtra MASS mgcv randomForest rpart]; };
 games = derive { name="games"; version="1.1.2"; sha256="01hbbr2hsxi5j9axpdl0jihpd55pa9hacjxmab8p7cixk3xqqqbf"; depends=[Formula MASS maxLik stringr]; };
 gamlr = derive { name="gamlr"; version="1.13-1"; sha256="1y97zsb9shll93f6j7r95296c26dbmxwa1z67ziy0yh4gsgbijc8"; depends=[Matrix]; };
-gamlss = derive { name="gamlss"; version="4.3-4"; sha256="0qbxcfvhy8blswzv8194x9f08p25vhknnm3h4hhz9lp5gh536fbk"; depends=[gamlss_data gamlss_dist MASS nlme survival]; };
+gamlss = derive { name="gamlss"; version="4.3-5"; sha256="167kpr6gnjfas8w944h7gds9mkhyly0q8kr0aa8crgi8g3j5npkn"; depends=[gamlss_data gamlss_dist MASS nlme survival]; };
 gamlss_add = derive { name="gamlss.add"; version="4.3-3"; sha256="0cs4mcpm0ckaim3g8q7m4yb6y3izqgvndzgkqgrwr75cxz0wd4vh"; depends=[gamlss gamlss_dist mgcv nnet rpart]; };
 gamlss_cens = derive { name="gamlss.cens"; version="4.3.1"; sha256="1y3a4b6n86h0r287065kr574ix0qpc2nnjpp8fp49nbpxwxlz962"; depends=[gamlss gamlss_dist survival]; };
 gamlss_data = derive { name="gamlss.data"; version="4.2-7"; sha256="0g3fmqrwxmj14r0p0ai1adq6cs3bd3ys47gjcja035xjiajg6cs2"; depends=[]; };
@@ -3698,6 +3697,7 @@ gamlss_tr = derive { name="gamlss.tr"; version="4.3-1"; sha256="1fdy61i2dmz2qafk
 gamlss_util = derive { name="gamlss.util"; version="4.3-2"; sha256="13facgyd14jl4j09d446jjzs91zwmv85g22gkyyi1hl4i5v5nfc4"; depends=[gamlss gamlss_dist zoo]; };
 gamm4 = derive { name="gamm4"; version="0.2-3"; sha256="19vy5wik9nh77cm25gp3j3j8w8vinwzx5pv90nzdzvx84yvvf0y3"; depends=[lme4 Matrix mgcv]; };
 gammSlice = derive { name="gammSlice"; version="1.3"; sha256="1vw8d0v0awyflh4gmbcf1g9nfx52cys8gpqvag5djri59p0y945a"; depends=[KernSmooth lattice mgcv]; };
+gamsel = derive { name="gamsel"; version="1.7-3"; sha256="02j94va7srdb2wzj4f1b63qx9mlck0harsq140ndjgf9d9c44h01"; depends=[foreach mda]; };
 gaoptim = derive { name="gaoptim"; version="1.1"; sha256="04igpn73k6f6652y496igwypfxmz4igg4jgxx6swqyi37182rqhm"; depends=[]; };
 gap = derive { name="gap"; version="1.1-16"; sha256="0xyln7ffapm31cvx4n86ncyg3cdz5d2149qb5h5xx3kf0a8r7gpz"; depends=[]; };
 gapmap = derive { name="gapmap"; version="0.0.2"; sha256="0xykpy3cmbiwwa3s8f4777585r7l441qb9ks6ajym01scqcj3nwl"; depends=[ggplot2 reshape2]; };
@@ -3710,7 +3710,6 @@ gb = derive { name="gb"; version="1.1.8-8"; sha256="18n9wqz82mjxjgzk8vc68kyz3b6l
 gbRd = derive { name="gbRd"; version="0.4-11"; sha256="06x97rw5i6v6cgjxkfhxnw4dn7lghn5q6ra7ri5ag1x9dkfzcl82"; depends=[]; };
 gbm = derive { name="gbm"; version="2.1.1"; sha256="0jkjr09w9cgfb21aznvr9nivxjmj1zxfsl7gafy4mwh719jzygy0"; depends=[lattice survival]; };
 gbm2sas = derive { name="gbm2sas"; version="1.0"; sha256="0khw1nqc4yl2719h3zc70yl26s4lmngfz5iqw00pcv838z8myc0i"; depends=[gbm]; };
-gbs = derive { name="gbs"; version="1.0"; sha256="19zcsvd258ibrj356zlwgryjqylcs56agg3z6d44xbnf8prg05ig"; depends=[nlme]; };
 gcbd = derive { name="gcbd"; version="0.2.5"; sha256="0fkg6vk0jkl6680n1hljyv783j4hd84mql0k4pfblvqafwv4nhm3"; depends=[lattice plyr reshape RSQLite]; };
 gcdnet = derive { name="gcdnet"; version="1.0.4"; sha256="0fmy0li06rahch4ir0xa81yilvrd0zqyhmpl4hfxjahhl3npw370"; depends=[Matrix]; };
 gclus = derive { name="gclus"; version="1.3.1"; sha256="02ba6zj9bjwrzykamjp40ajynx9xjx9h2i85n0ym0r5lcki4x6fn"; depends=[cluster]; };
@@ -3718,11 +3717,11 @@ gcmr = derive { name="gcmr"; version="0.7.5"; sha256="1z1hdgdasmw3drld8nmkw6cc1x
 gconcord = derive { name="gconcord"; version="0.41"; sha256="1n3pfwk6vip19q1zhbz1n164f9vi7mig8pcd07c4wxnm5ir9dagy"; depends=[]; };
 gcookbook = derive { name="gcookbook"; version="1.0"; sha256="0hb52zfi5bl2j0h8lazz4gzhhcvpicb4ld6xm2vkvi4cj47piyy8"; depends=[]; };
 gdalUtils = derive { name="gdalUtils"; version="0.3.1"; sha256="1a6sg3x5yfffa9xrkvc98i2hm3lvna4jw7p89gn2bf74kzphqpmy"; depends=[foreach R_utils sp]; };
-gdata = derive { name="gdata"; version="2.16.1"; sha256="14ssq8z45zf1wwgfgxlc33i6hsdhc0b71kfncfclxz5ahxaqdkdm"; depends=[gtools]; };
+gdata = derive { name="gdata"; version="2.17.0"; sha256="0kiy3jbcszlpmarg311spdsfi5pn89wgy742dxsbzxk8907fr5w0"; depends=[gtools]; };
 gdimap = derive { name="gdimap"; version="0.1-9"; sha256="0ksbpcy739bvsiwis0pzd03zb4cvbd8d5wdf8whfn9k6mkj4x9rs"; depends=[abind colorspace geometry gridExtra gsl movMF oro_nifti rgl]; };
 gdistance = derive { name="gdistance"; version="1.1-7"; sha256="1wcpjx76pnkpc6kmqx7bq73qbvzfzjb9s46qb7gi7kabpkya97il"; depends=[igraph Matrix raster sp]; };
 gdm = derive { name="gdm"; version="1.0"; sha256="08wafxvds4sxaxv7mbbkbzilkpfz1xnzdc5jdw3pldvmbgk861vd"; depends=[plyr raster Rcpp reshape2 vegan]; };
-gee = derive { name="gee"; version="4.13-18"; sha256="1s2cjgg4ypw72g710m93g6az763xz6sxw91nd6cwm5jjvr9vb91f"; depends=[]; };
+gee = derive { name="gee"; version="4.13-19"; sha256="14n2fa2jmibw5j8n4qgbl8xbxhapmx4z3zrmkbcci39k9dsyplzb"; depends=[]; };
 geeM = derive { name="geeM"; version="0.7.4"; sha256="0vxgwx6qx2xhhj217d6x7m5y89r0b9xxdd4k3sw0zgfga133ij7w"; depends=[Matrix]; };
 geepack = derive { name="geepack"; version="1.2-0"; sha256="1pxh9nsyj9a40znm4zza4nbi3dkhb96s3azi43p9ivvfj3l21m74"; depends=[]; };
 geesmv = derive { name="geesmv"; version="1.1"; sha256="1xijdjmkg6nw2y1556zbaic969dg23np0wrb9ncknsrhq4aa28pa"; depends=[gee MASS matrixcalc nlme]; };
@@ -3739,16 +3738,17 @@ genalg = derive { name="genalg"; version="0.2.0"; sha256="1wzfamq8k5yhwbdx0wy1w5
 genasis = derive { name="genasis"; version="1.0"; sha256="1r0733cc2hss3f8dp19s1ji55yp72mds7p3x1zvvpiks2r7w712p"; depends=[fitdistrplus Kendall]; };
 gendata = derive { name="gendata"; version="1.1"; sha256="1r5bhmfblhk6d31v0byhp4a0pmpri6vk697zmmx9b0hvhda7mllf"; depends=[]; };
 gender = derive { name="gender"; version="0.4.3"; sha256="0dhwhv2b86arpmyr89g69h8ikw0f2x27ig420jngfb9gxljj9phc"; depends=[devtools dplyr httr jsonlite]; };
-genderizeR = derive { name="genderizeR"; version="1.1.0"; sha256="0hdphzmjqlzwk1gnhncidsdqrbc1lra3a4nl992ap9gfk890rvi4"; depends=[data_table httr magrittr stringr tm]; };
+genderizeR = derive { name="genderizeR"; version="1.2.0"; sha256="1a7vafspdd64wr47k1z391ff1ri5f8bynlgn876khcxzhm2vwdva"; depends=[data_table httr magrittr stringr tm]; };
 geneListPie = derive { name="geneListPie"; version="1.0"; sha256="0z2gawfzhm05dafj4zlj6ifmf0dy7p1hrpa59lzxrnrc0wr6laji"; depends=[]; };
 geneSignatureFinder = derive { name="geneSignatureFinder"; version="2014.02.17"; sha256="1s9jj87wnzzgm9hnws09yhrxdlb6jw56i3ddwznvmh8vpzrspv4h"; depends=[class cluster survival]; };
 genepi = derive { name="genepi"; version="1.0.1"; sha256="1whhdlq9p8gmygv7464hvfz6dhm65gqq1dqls6hgpmw822zxgbd5"; depends=[]; };
 genetics = derive { name="genetics"; version="1.3.8.1"; sha256="0gfbrpz0zp5bgw3s21wrhjfy70laif47wcrjrm6mjgs6xapiw790"; depends=[combinat gdata gtools MASS mvtnorm]; };
 genlasso = derive { name="genlasso"; version="1.3"; sha256="1q4ybg8xzphnqwywwdb7i2q94dlxwpggvisjqqdj39jh2cabda57"; depends=[igraph MASS Matrix]; };
-genoPlotR = derive { name="genoPlotR"; version="0.8.2"; sha256="0q12sg13yn5f3j5gk0qzszp81x52lpwpk3z4cg0bgxi9zbwmw467"; depends=[ade4]; };
+genoPlotR = derive { name="genoPlotR"; version="0.8.4"; sha256="06c4flddv83nwjagnszl0sv92mbxf91qml8awhhxnrs1bna04f1p"; depends=[ade4]; };
 genpathmox = derive { name="genpathmox"; version="0.2"; sha256="1m08j10mrvkrnlgxbhjn3qmjz29p121fc4haww5qrici06nipfdm"; depends=[diagram mice plspm quantreg]; };
 genridge = derive { name="genridge"; version="0.6-5"; sha256="0ms8n1yrga5qqg9ni41ifyw6320aajyrwvjh6d27q1k96j2dicp4"; depends=[car]; };
 gensemble = derive { name="gensemble"; version="1.0"; sha256="0yyi7djzqx4yhxp6yy1rjgvzidjlna79ds89bgj6m6zj3aav6yw2"; depends=[]; };
+geo = derive { name="geo"; version="1.4-3"; sha256="0yxlafm99ypwf1700nh3hnnpndb6ghwwbi5sp6715zjbkkx94482"; depends=[mapdata maps]; };
 geoBayes = derive { name="geoBayes"; version="0.2.150402"; sha256="123b2xds69clkgjvczkdbl673cahmiprrr1cki2alspryy37icar"; depends=[coda sp]; };
 geoCount = derive { name="geoCount"; version="1.150120"; sha256="1kcjqls91r6p8ykn901c5p3v2lzbyainahhjpnr5c3a57v8s73ms"; depends=[Rcpp RcppArmadillo]; };
 geoR = derive { name="geoR"; version="1.7-5.1"; sha256="10rxlvlsg2avrf63p03a22lnq4ysyc4zq06mxidkjpviwk1kvzqy"; depends=[MASS RandomFields sp splancs]; };
@@ -3757,17 +3757,18 @@ geocodeHERE = derive { name="geocodeHERE"; version="0.1.2"; sha256="0sr8r6f41bpi
 geojsonio = derive { name="geojsonio"; version="0.1.0"; sha256="17nv7xn80sf2nn6fvmlbnbcgg66n6bh8x725wdfnhk3gg1rb64g5"; depends=[httr jsonlite magrittr maptools rgdal rgeos sp V8]; };
 geomapdata = derive { name="geomapdata"; version="1.0-4"; sha256="1g89msnav87kim32xxbayqcx1v4439x4fsmc8xhlvq4jwlhd5xxw"; depends=[]; };
 geometry = derive { name="geometry"; version="0.3-5"; sha256="1x1dhdbqnq1wi1r4njj3l1g8yag2dig19rna3a5pwf1j1gxbl0i8"; depends=[magic]; };
-geomorph = derive { name="geomorph"; version="2.1.5"; sha256="0xys2gwin16h4ahcjy3m49sslypilxlcgrnky19vv4aagrydq776"; depends=[ape geiger jpeg phytools rgl]; };
+geomorph = derive { name="geomorph"; version="2.1.6"; sha256="03imyj0ygilphmbyagpnwzzcwnvj8lmxn19ml47j4x8mi96b5jpl"; depends=[ape geiger jpeg phytools rgl]; };
 geonames = derive { name="geonames"; version="0.998"; sha256="1p0x260i383ddr2fwv54pxpqz9vy6vdr0lrn1xj7178vxic1dwyy"; depends=[rjson]; };
 geophys = derive { name="geophys"; version="1.3-8"; sha256="0nw4m30r46892cf1n575jkfjgdjc14wic9xzmzcnskbk8cd50hp2"; depends=[cluster GEOmap RFOC RPMG RSEIS]; };
 georob = derive { name="georob"; version="0.1-5"; sha256="0awcqcpv82pn2z7lgir73pg2b0whvrrfy55gi0jrjn7lzyakhqaq"; depends=[constrainedKriging lmtest nleqslv nlme quantreg RandomFields robustbase snowfall sp]; };
 geoscale = derive { name="geoscale"; version="2.0"; sha256="0gisds0in32xhw54fxfyxvwxgrfjs871wmqf6l915nr896rlx0bm"; depends=[]; };
-geospacom = derive { name="geospacom"; version="0.5-7"; sha256="00yi2wwnjh2z8xhzfbp1jhh5fhq2z885s0gv937xsin4a63m76fd"; depends=[classInt geosphere maptools rgeos sp]; };
-geosphere = derive { name="geosphere"; version="1.3-13"; sha256="124l1mfqf4qq5qsa0k3r5hkky9q2m2waq2rp4xcym49wr3jysf6c"; depends=[sp]; };
+geospacom = derive { name="geospacom"; version="0.5-8"; sha256="14qyjbq0n43c2zr9gp11gdqgarvmicx3gpq2ql2vjfzrmirxwjgg"; depends=[classInt geosphere maptools rgeos sp]; };
+geosphere = derive { name="geosphere"; version="1.4-3"; sha256="15l5qqazh55l1w9il53j85i5h42sjvkcv0vladgi1axhzyyd41c7"; depends=[sp]; };
 geospt = derive { name="geospt"; version="1.0-1"; sha256="1nv5wn8s4vlbyyzi8is7zsa1vrijp1va0vhi8l2yny8fh22qhjij"; depends=[fields genalg gsl gstat limSolve MASS minqa plyr sgeostat sp TeachingDemos]; };
-geostatsp = derive { name="geostatsp"; version="1.2.1"; sha256="0p93b8mmjsqg7qg1c6v7c5ism8jqf7w21rydck7agh4i64q47s7y"; depends=[abind Matrix numDeriv pracma raster sp]; };
+geosptdb = derive { name="geosptdb"; version="0.5-0"; sha256="0m0dlazhq2za71mi3q8mz2zvz7yrmda7lha02kh9n820bx89v33z"; depends=[FD fields geospt gsl limSolve minqa sp StatMatch]; };
+geostatsp = derive { name="geostatsp"; version="1.3.4"; sha256="0bg26qhqrjrh85dly7i44vkzyi02gbrz7fx76rmx42f4alcsr66r"; depends=[abind Matrix numDeriv raster sp]; };
 geotools = derive { name="geotools"; version="0.1"; sha256="0d0vf9dvrrv68ivssp58qzaj8vra26ms33my097jmzmgagwy1spd"; depends=[]; };
-geotopbricks = derive { name="geotopbricks"; version="1.3.6"; sha256="1c4v590r27lsz2ld2dsi9dv7fsbfklyqgsjvcrbk4di18nc1hygp"; depends=[raster rgdal stringr zoo]; };
+geotopbricks = derive { name="geotopbricks"; version="1.3.7.2"; sha256="15z4969vgh0jwksqrjsd5m598xbz2ppf1ymvf80id4h0grzh08l5"; depends=[raster rgdal stringr zoo]; };
 geozoo = derive { name="geozoo"; version="0.4.3"; sha256="0nmmmyk0ih5aqpsn7ip4dhgfm7jhcnca8pigyr9794b110icq1rv"; depends=[bitops]; };
 getopt = derive { name="getopt"; version="1.20.0"; sha256="00f57vgnzmg7cz80rjmjz1556xqcmx8nhrlbbhaq4w7gl2ibl87r"; depends=[]; };
 gets = derive { name="gets"; version="0.2"; sha256="0vdg8g588asyzkld9v3rmscx3k727ncxnjzi8qxinlr2zhw9nbcq"; depends=[zoo]; };
@@ -3787,21 +3788,21 @@ ggplot2 = derive { name="ggplot2"; version="1.0.1"; sha256="0794kjqi3lrxb33lr1my
 ggsubplot = derive { name="ggsubplot"; version="0.3.2"; sha256="1rrq47rf95hnwz8c33sbnpvc37sb6v2w37863hyjl6gc0bhyrvzb"; depends=[ggplot2 plyr proto scales stringr]; };
 ggswissmaps = derive { name="ggswissmaps"; version="0.0.2"; sha256="1cl8m9j3d2kf8dbpq09q36v7nwkgz7khqds431l0kmkzq02qhddf"; depends=[ggplot2]; };
 ggtern = derive { name="ggtern"; version="1.0.5.0"; sha256="0ykgz3268381glkrv1gbn9qnyrkxsmihc3srv8zrldbq18zbr0a8"; depends=[ggplot2 gtable MASS plyr proto reshape2 scales sp]; };
-ggthemes = derive { name="ggthemes"; version="2.1.2"; sha256="049fjk0f960sjsnqns2kgk7dvr6jr5rrpxgl8qbxx4idz95bvdi7"; depends=[colorspace ggplot2 proto scales]; };
+ggthemes = derive { name="ggthemes"; version="2.2.1"; sha256="0d6h3ymxwxcii95wggxmyvihnwsl85nlqja2ac34dsfwlv75cc16"; depends=[colorspace ggplot2 proto scales]; };
 ggvis = derive { name="ggvis"; version="0.4.2"; sha256="07arzhczvh2sgqv9h30n32s6l2a3rc98rid2fpz6kp7vlin2pk1g"; depends=[assertthat dplyr htmltools jsonlite lazyeval magrittr shiny]; };
 ghyp = derive { name="ghyp"; version="1.5.6"; sha256="0y3915jxb2rf01f7r6111p88ijhmzyz4qsmy7vfijlilkz0ynn20"; depends=[gplots numDeriv]; };
 giRaph = derive { name="giRaph"; version="0.1.2"; sha256="137c39fz4vz37lpws3nqhrsf4qsyf2l0mr1ml3rq49zz4146i0rz"; depends=[]; };
 gibbs_met = derive { name="gibbs.met"; version="1.1-3"; sha256="1yb5n8rkphsnxqn8rv8i54pgycv9p7x1xhinx4l5wzrds3xhf2dc"; depends=[]; };
 gimme = derive { name="gimme"; version="0.1-1"; sha256="1snzlwq6d86ygpn778m3inlfqpymp0l05pdlrdkm8ip4wgir0hvs"; depends=[lavaan qgraph]; };
-gistr = derive { name="gistr"; version="0.2.0"; sha256="1812qh3f4nwbpqaiq4gfkalfckwqvn84j7v7qfj69gd4jzxcwywz"; depends=[assertthat dplyr httr jsonlite knitr magrittr rmarkdown]; };
+gistr = derive { name="gistr"; version="0.3.0"; sha256="0clwbm2glazn55glf9dmlfv5l0537k1sv84bs8ahhx0slwh7g604"; depends=[assertthat dplyr httr jsonlite knitr magrittr rmarkdown]; };
 git2r = derive { name="git2r"; version="0.10.1"; sha256="1damlhxf3ma0flqw4am42wj2dxk3m232wh0wpl1ikgx0dcfn9l8f"; depends=[]; };
 gitter = derive { name="gitter"; version="1.0.4"; sha256="1pvl8k8mb15mcfz1074y246s9basmi5vbpw2n1ca0d8wm5wdidap"; depends=[EBImage ggplot2 jpeg logging PET tiff]; };
+gkmSVM = derive { name="gkmSVM"; version="0.55"; sha256="1ih4nwsbx0b8d7dsf55ki6hx9kqhanyw2g8na81s7f109dckg2hx"; depends=[kernlab Rcpp seqinr]; };
 glarma = derive { name="glarma"; version="1.3-0"; sha256="0fp354zxkddc4giynhwjlf9mg4sklcmqi0gdn8nxm1pkdpb86rba"; depends=[MASS]; };
 glasso = derive { name="glasso"; version="1.8"; sha256="0gcapw7kyxb19wvdyxq1vsmc5j7yyd0rvqxs2i71k31q352sg6zw"; depends=[]; };
-glassomix = derive { name="glassomix"; version="1.2"; sha256="13a2ly0by58z8djq8nbakpyacgb6nkdsqxjq44yw4v2fy3s22z3n"; depends=[glasso huge mvtnorm]; };
 glba = derive { name="glba"; version="0.2"; sha256="0ckcz6v6mfbv34s8sp086czhb5l58sky79k84332rrz6wj47p3md"; depends=[]; };
 glcm = derive { name="glcm"; version="1.2"; sha256="00bkhd4arvg7ahdr5kfvran46b2sywv9i0rlwalx9pmyvjwnzm5b"; depends=[Rcpp RcppArmadillo]; };
-gld = derive { name="gld"; version="2.2.1"; sha256="1x9xlqj87xmk90hn20k1yvnvyndxdbi67yrxrfdhr3lhxabq5msw"; depends=[]; };
+gld = derive { name="gld"; version="2.3"; sha256="072q79aisvygi1pjndvvn2xaczi1xlpd9sjc4f1xspavy567z09d"; depends=[]; };
 gldist = derive { name="gldist"; version="2160.2"; sha256="1dcf3pb4xqvhqj4m3xc3ihzjbzxjspjrnc8819hmlnmdd0csghmx"; depends=[]; };
 glinternet = derive { name="glinternet"; version="1.0.0"; sha256="0aa75xq2w64iknbyl6qw9ckk8v64a96xz0ar1mbqd8zhx0xvibyy"; depends=[]; };
 gllm = derive { name="gllm"; version="0.35"; sha256="1m9asamh2yha9q8mrllvvc9qj2im6cspvfpafzc8krmh17zq4ins"; depends=[]; };
@@ -3838,14 +3839,14 @@ gmp = derive { name="gmp"; version="0.5-12"; sha256="10fpvcli526a8j6jaryn0mwk78c
 gmt = derive { name="gmt"; version="1.2-0"; sha256="09az2iwwhyrls4mr619vwzhzmaks6klm67lnir48bh40hynsvibp"; depends=[]; };
 gnm = derive { name="gnm"; version="1.0-8"; sha256="1581lzkb1v3y0arrq7x1bg7c91cii87bifxcdi1jzyc5rxj261la"; depends=[MASS Matrix nnet qvcalc relimp]; };
 gnmf = derive { name="gnmf"; version="0.7"; sha256="00y1dx1c66gv769yiwnb91xbr77wpidf36x0n0dzaqfn7s9yh6xq"; depends=[]; };
-gnumeric = derive { name="gnumeric"; version="0.7-2"; sha256="14c7a8aiqvqfbrjb1akpfjwidrzdhrw8a07ask083krki6vbi7hh"; depends=[XML]; };
+gnumeric = derive { name="gnumeric"; version="0.7-4"; sha256="0q9qrwwkrwcdh5c1prh7d8j4raca59vgaxx7rjh36cml372vkrai"; depends=[XML]; };
 goalprog = derive { name="goalprog"; version="1.0-2"; sha256="1h3nd3d53hbz5hl3494lpfjnp1ddklc17nhgw18362jd1nk14awy"; depends=[lpSolve]; };
 gof = derive { name="gof"; version="0.9.1"; sha256="1s12gga9d6yizn2y7lzql4jd80lp5jpyml8ybn7xqswp8am82vpg"; depends=[]; };
 goft = derive { name="goft"; version="1.1"; sha256="19mb2i2iri09v2dgkyl1ral2m7bzyizncnz24niwg13afpwbq12h"; depends=[gPdtest mvShapiroTest]; };
-goftest = derive { name="goftest"; version="1.0-2"; sha256="11xw0cfj71z5smywsds9ijbhf3glxkqnhxmwwdqkv4gjrrr2y1bv"; depends=[]; };
+goftest = derive { name="goftest"; version="1.0-3"; sha256="0rwz8y23dsklwvmd4sxq0bcklsa7l47lbs5lkcdn58jsdzm7bfrq"; depends=[]; };
 gogarch = derive { name="gogarch"; version="0.7-2"; sha256="03gpl73zc6kx4gni59xbg7b38dkpd7p4c7kvlqm46f58j257viik"; depends=[fastICA fGarch]; };
-gooJSON = derive { name="gooJSON"; version="1.0.01"; sha256="02sldh5lsrjprc9mbf99jyid7ij62db5f1h60z719gxl4pk6fjms"; depends=[rjson]; };
-googleVis = derive { name="googleVis"; version="0.5.8"; sha256="185pp2sgdw81p9vjkxzx4nrv9fp9jw24mqng7k98ql98p3kw9y21"; depends=[RJSONIO]; };
+googleVis = derive { name="googleVis"; version="0.5.9"; sha256="0r182x6ccpdqkgqmqf26lvajhw954vqzm4bnyvpqif57nnzw4zpx"; depends=[RJSONIO]; };
+googlesheets = derive { name="googlesheets"; version="0.1.0"; sha256="0c3a521i2nw5v6ydz0ci7vbxlzfv3bh39yi7njah25zfbxjgm751"; depends=[cellranger dplyr ggplot2 httr plyr stringr tidyr XML xml2]; };
 goric = derive { name="goric"; version="0.0-8"; sha256="0ayac0yfkxrl13ckc2pwfqnmsrhmbg5bi6iwzx0fmh81vrlp0zrm"; depends=[MASS Matrix mvtnorm nlme quadprog]; };
 govStatJPN = derive { name="govStatJPN"; version="0.1"; sha256="03sywa7rl5rblvv370mfszz5ngp850qf32yydy1fdx10lv5amrfl"; depends=[]; };
 gpairs = derive { name="gpairs"; version="1.2"; sha256="09mkdbs9hklxnmqcsnf65s3dfsfcr7kppp6zxj08v5hxym1gpz3l"; depends=[barcode colorspace lattice MASS vcd]; };
@@ -3857,12 +3858,13 @@ gpmap = derive { name="gpmap"; version="0.1.1"; sha256="00jhslbxbp6dgq7bw346hfpw
 gpr = derive { name="gpr"; version="1.1"; sha256="03ywik11kc6cnaqrzzzi94jkrdbd378m3sf26f2vpb7d834nl728"; depends=[]; };
 gptk = derive { name="gptk"; version="1.08"; sha256="0fk6c8f8fni4y2n2cbfwywlfyz74xlb8lx25wajsxr2v4x74pa7l"; depends=[fields Matrix]; };
 gputools = derive { name="gputools"; version="0.28"; sha256="0ria03ggcfqgn93gjv2anhvkd3k73c6vfwgka16kf66g1nfzxs4l"; depends=[]; };
+gquad = derive { name="gquad"; version="1.0-0"; sha256="0rfhcc7c0lfn4hqwcbly1kdpna9kr5ryvan279iydysv5iha96rr"; depends=[ape seqinr]; };
 grImport = derive { name="grImport"; version="0.9-0"; sha256="1d8fd7502qj7cirjqdkr1qj51rylw2fz5hs06avfvc2dxs2xwfw1"; depends=[XML]; };
 grade = derive { name="grade"; version="0.2-1"; sha256="085hfvqn880yk19axdjv3z9jr33kls212vs172a8mzhnkallph1r"; depends=[]; };
 gramEvol = derive { name="gramEvol"; version="2.0-2"; sha256="1xrn5gkr9rxw53i5l2sqcgai9q0w4kyrychf0nq17cvcynw1y1lx"; depends=[]; };
 granova = derive { name="granova"; version="2.1"; sha256="161fznqlnwmw53abmg2n62lhxxda7400ljnadvcdvsm8f6kcjf80"; depends=[car]; };
 granovaGG = derive { name="granovaGG"; version="1.3"; sha256="1bsxad2h7rmbkmmg5zx6wbpws62dmp7n905gnp17n8cl8c6w2jp9"; depends=[ggplot2 gridExtra plyr RColorBrewer reshape2]; };
-graphicalVAR = derive { name="graphicalVAR"; version="0.1.2"; sha256="0vc2x58z4w1hhvkqpxya3wr78p2b1irfyivc7njxw8a2595rc347"; depends=[glasso glmnet Matrix mvtnorm qgraph Rcpp RcppArmadillo]; };
+graphicalVAR = derive { name="graphicalVAR"; version="0.1.3"; sha256="0awbcx8qb77r4qb90xinp49glwbkvyfb5f5y2qrjk8rr2jd62j0s"; depends=[glasso glmnet Matrix mvtnorm qgraph Rcpp RcppArmadillo]; };
 graphicsQC = derive { name="graphicsQC"; version="1.0-6"; sha256="07kzz0r8rh4m7qqxnlab0d4prr56jz5kspx782byspkcm5l4xrsl"; depends=[XML]; };
 graphscan = derive { name="graphscan"; version="1.0"; sha256="15kdpp2k2gpfr8qq6wr08gva5hlxqha2h48zi1j3p6r766j07082"; depends=[ape rgl snowfall sp]; };
 greport = derive { name="greport"; version="0.5-3"; sha256="0cd7rqzrk1yb22ksbmva1fl9k388bxxm586c20j8k8z5zympi9g1"; depends=[data_table Formula ggplot2 Hmisc lattice latticeExtra rms survival]; };
@@ -3876,7 +3878,7 @@ gridSVG = derive { name="gridSVG"; version="1.4-3"; sha256="1jgrhckjbvccp5zqbkki
 grnn = derive { name="grnn"; version="0.1.0"; sha256="1dxcmar42g9hz4zlyszlmmnnsnja0gxfggav5jxv0gkp32rkd0wh"; depends=[]; };
 groc = derive { name="groc"; version="1.0.5"; sha256="1kqcdyq1y80gd62jpn38yz6q1qmg84b7k8qcniip5h948vfzkddg"; depends=[MASS mgcv pls robust robustbase rrcov]; };
 grofit = derive { name="grofit"; version="1.1.1-1"; sha256="1rnym5fxbg3bin2idmymrwvf1fcd646bipbgjd6wby8my69zy4c5"; depends=[]; };
-gromovlab = derive { name="gromovlab"; version="0.6-16"; sha256="0ndi4i91fnndvpp3xmr405a62vq5gjagw2qrvcmq1q6cgg7bj17q"; depends=[cluster glpkAPI igraph phangorn quadprog]; };
+gromovlab = derive { name="gromovlab"; version="0.7-6"; sha256="02s7x23610dbpmrqh7pimspa10v3fnmj48fwmh0a6igd74rmj2mg"; depends=[ape cluster glpkAPI igraph quadprog]; };
 groupRemMap = derive { name="groupRemMap"; version="0.1-0"; sha256="1bfp746j0dx7kk44nyjqmimvgw14par9ayvqxnzldc05qsazjdwx"; depends=[]; };
 grouped = derive { name="grouped"; version="0.6-0"; sha256="1glxgacpwk7yjbkwg5ci6bmb2il6hf5zhydwi5bbq6hc032m9976"; depends=[MASS]; };
 growcurves = derive { name="growcurves"; version="0.2.3.9"; sha256="1f8hh8ppp6bgrb8crm46xrria3vdnz62aya9lhwcdaggfmy7j25l"; depends=[Formula ggplot2 Rcpp RcppArmadillo reshape2 scales testthat]; };
@@ -3890,16 +3892,16 @@ grt = derive { name="grt"; version="0.2"; sha256="0cqjk7yqk2ryx1pgvjd3x8l25hqv92
 gsDesign = derive { name="gsDesign"; version="2.9-3"; sha256="0dd96hciiksf436lpm1q35in06b82p4h09spklf28n0p5hgc9225"; depends=[ggplot2 plyr RUnit stringr xtable]; };
 gsalib = derive { name="gsalib"; version="2.1"; sha256="1k3zjdydzb0dfh1ihih08d4cw6rdamgb97cdqna9mf0qdjc3pcp1"; depends=[]; };
 gsarima = derive { name="gsarima"; version="0.1-4"; sha256="1ay3iamnvg7mbnl1xaxxcyic559bdnfspy883w2bwgy20yhr34yg"; depends=[MASS]; };
-gsbDesign = derive { name="gsbDesign"; version="0.96-2"; sha256="0sk4a66z9bqi3aa2ky9472p9znfm93kc9p5igdmvii4dr0syyfxd"; depends=[gsDesign lattice]; };
+gsbDesign = derive { name="gsbDesign"; version="0.96-3"; sha256="03q2lxz6x4zpwnn15a7mda2qv0d5xrsz563y7103gnmdxnxqqsbc"; depends=[gsDesign lattice]; };
 gset = derive { name="gset"; version="1.1.0"; sha256="1gingqw6la8n7mnl47wpz9sicxca4zi2m8p35n6cnihrniibhajc"; depends=[Hmisc MCMCpack mvtnorm]; };
 gsg = derive { name="gsg"; version="2.0"; sha256="17fjl7aw1s814krnszxd4y1d4210bnkrf4kb2fwsycqwcwms5pm7"; depends=[boot mgcv mvtnorm numDeriv]; };
 gsheet = derive { name="gsheet"; version="0.1.0"; sha256="02mclvkq9lpp57ii8k3wj8cqjii9zsg4nl4i7zsa8b88r2bjmf9r"; depends=[dplyr rvest stringr]; };
 gskat = derive { name="gskat"; version="1.0"; sha256="19mbif7wr88vk5wlc7m2l4xghjmfj2qd3s8yvjlkawbnjk8x6ib0"; depends=[CompQuadForm e1071 gee geepack Matrix]; };
 gsl = derive { name="gsl"; version="1.9-10"; sha256="06n21p0k2ki6nb725a6sxwlb4p7xc5jhg11nq9c3z3dj39r0qgbd"; depends=[]; };
 gsmoothr = derive { name="gsmoothr"; version="0.1.7"; sha256="00z9852vn5pj04dhl3w36yk0xjawniay6iifw1i7fd8g98mgspxp"; depends=[]; };
-gss = derive { name="gss"; version="2.1-4"; sha256="0vmyz3q7b2chzmvrwx6bk2yj5kmaxym6lznyrddxgf7xzjipvlii"; depends=[]; };
-gsscopu = derive { name="gsscopu"; version="0.9-2"; sha256="0hg2ry9rhnn51g368fg1zxswx826y3m0yn2wjb2g5rw4a4zn1frr"; depends=[gss]; };
-gstat = derive { name="gstat"; version="1.0-23"; sha256="0as4afwlwzmi37k8sbm0kssin8mikrny88smb71c0wf616yba4xi"; depends=[FNN lattice sp spacetime zoo]; };
+gss = derive { name="gss"; version="2.1-5"; sha256="19bysbh6n04psv0mgvlhkpkc463f6zfiwbdsvd28fakbzcwwm8h2"; depends=[]; };
+gsscopu = derive { name="gsscopu"; version="0.9-3"; sha256="0bvhhs5wn4y1dcff2g87f80jdn3i4mdbvdbydsbx80ng38rfxhhg"; depends=[gss]; };
+gstat = derive { name="gstat"; version="1.0-25"; sha256="19vs45mf2jpzfhd9c4gn5k0hdn652awg5bcbbjl4ixd52xiya2py"; depends=[FNN lattice sp spacetime zoo]; };
 gsubfn = derive { name="gsubfn"; version="0.6-6"; sha256="196x4c3ihf4q3i0v7b1xa6jm8jjld2rsx00qz03n90wfnjdx5idv"; depends=[proto]; };
 gsw = derive { name="gsw"; version="1.0-3"; sha256="0ca3h567r23bdldic7labk1vbz8hhslw568lacbdcikm8q16hk72"; depends=[]; };
 gtable = derive { name="gtable"; version="0.1.2"; sha256="0k9hfj6r5y238gqh92s3cbdn34biczx3zfh79ix5xq0c5vkai2xh"; depends=[]; };
@@ -3988,13 +3990,13 @@ histmdl = derive { name="histmdl"; version="0.4-1"; sha256="0kiz95hdi658j5s7aqlf
 histogram = derive { name="histogram"; version="0.0-23"; sha256="0hrhk423wdybqbvgsjn7dxgb95bkvmbh573q1696634hvzfdm68c"; depends=[]; };
 historydata = derive { name="historydata"; version="0.1"; sha256="1h69x3iig542d43p9zm8x83p4dq48iwsw606j4fndnqhx99vzkw6"; depends=[]; };
 hitandrun = derive { name="hitandrun"; version="0.5-1"; sha256="0qgja0xw6687hr9qw4cwl9gq1vbv8gdnh6fkq2wx5cahgjz1p3bj"; depends=[rcdd]; };
-hive = derive { name="hive"; version="0.1-16"; sha256="1xaxnr8nfkji2b5f5dq2h01pkl20rm24wxnf1y1xv695v3j58ibd"; depends=[rJava XML]; };
-hlr = derive { name="hlr"; version="0.0-4"; sha256="04w1hzjfg2ly9vm9ynh676fy74d9ncy3a1mak209z2ddgr3m7r2y"; depends=[MASS]; };
+hive = derive { name="hive"; version="0.2-0"; sha256="0ywakjphy67c4hwbh6prs4pgq5ifd8x8inxjkigjiqz6jx3z852v"; depends=[rJava XML]; };
 hmeasure = derive { name="hmeasure"; version="1.0"; sha256="0wr0xq956glmhvy4yis3qq7cfqv9x82ci9fzx3wjvaykd16h0sx9"; depends=[]; };
 hmm_discnp = derive { name="hmm.discnp"; version="0.2-3"; sha256="1r9xxgsqh5pw9incldaxnsqhyanhd4jwm6w0ix1k43i53dw4diyr"; depends=[]; };
 hmmm = derive { name="hmmm"; version="1.0-3"; sha256="0yjx5i13jbv7vzxn84m6305124ri7jnym0bxbdj46s6l7lw025a9"; depends=[MASS mvtnorm quadprog]; };
 hnp = derive { name="hnp"; version="1.0"; sha256="1sxbgz57js1vxhz309dnj6jhw4y6c0pzk0a9xk8avacicnv0bxhr"; depends=[MASS]; };
-hoardeR = derive { name="hoardeR"; version="0.0-2"; sha256="1k9a469h6fmr1br93dsk4q14h2bw8225l0v5sfp2wyr8sfpwm1dg"; depends=[httr stringr XML]; };
+hoa = derive { name="hoa"; version="2.1.1"; sha256="0ph83z28200q488nj5zbprzxxh7nskp0rx62s1qngai2iy4zfnj8"; depends=[statmod survival]; };
+hoardeR = derive { name="hoardeR"; version="0.1"; sha256="1a3kf676mchrla9g0b619dx09ihxvlmahgwlbwqny6zwr49w7vzl"; depends=[httr MASS R_utils stringr XML]; };
 holdem = derive { name="holdem"; version="1.1"; sha256="07h4cbg7hx91hc6ypi6hbalzdd9qz9rfhjgk5sq1srnangwwnxlw"; depends=[]; };
 homals = derive { name="homals"; version="1.0-5"; sha256="1azrwvdzn379in2sz9d94w2f2xp0d6iiayrv0bws44kvdzr95aqm"; depends=[ape rgl scatterplot3d]; };
 homeR = derive { name="homeR"; version="0.1"; sha256="0yq93b3wkgbnwzpyhx9c73sb9xgz7m3z4p5rflk3lmc0p53h81g5"; depends=[]; };
@@ -4006,19 +4008,20 @@ howmany = derive { name="howmany"; version="0.3-1"; sha256="045ck8qahfg2swbgyf7d
 hpcwld = derive { name="hpcwld"; version="0.5"; sha256="17k4mw41gygwgvh7h78m0jgzh1bivrvrsr8lgxxw3sbkw88lwb40"; depends=[multicool partitions]; };
 hpoPlot = derive { name="hpoPlot"; version="2.0"; sha256="080jzi1zw510clbbkmf2wkwbfgna06kfz91i7d90b9pqi7krj28j"; depends=[functional magrittr Rgraphviz]; };
 hqmisc = derive { name="hqmisc"; version="0.1-1"; sha256="0jcy2hb3dmzf9j4n92aq7247mx9w7n30wpsx0dkchqnjwlqwwncw"; depends=[]; };
+hqreg = derive { name="hqreg"; version="0.9"; sha256="1091qrs31iabnms0z15f1mliaq69k9snxsscfizh8rws2vqhrjvr"; depends=[]; };
 hrr = derive { name="hrr"; version="1.1.1"; sha256="17jzsgh2784y7jdwpa50v7qz99dw6k2n25sisnam6h1a39b96byn"; depends=[]; };
-hsdar = derive { name="hsdar"; version="0.1.5"; sha256="1ii83dpndshq8d00f3dxrzcxqplcc5b85b9cixxbda5bpvrlkpg1"; depends=[raster rgdal rootSolve signal sp]; };
+hsdar = derive { name="hsdar"; version="0.2.1"; sha256="0353601af5n8dkz7adxzqig30pwbli2yvb5lx5lb5ihaq706yr51"; depends=[raster rgdal rootSolve signal sp]; };
 hsicCCA = derive { name="hsicCCA"; version="1.0"; sha256="1d4lkjrihwhl3jrsj7250ccd90nfwpllyavc3mp15fhcy2jnjci8"; depends=[]; };
 hsmm = derive { name="hsmm"; version="0.4"; sha256="1fh8c5kfv4brygdq6bfkrhrhkm99mxl4ljb1mhp9nf2bjlla11mc"; depends=[mvtnorm]; };
 hsphase = derive { name="hsphase"; version="2.0.1"; sha256="1z7yxbknldxn780dxw9xz984b3i8pj5hmdnbynvxc5k0ss8g7isy"; depends=[Rcpp RcppArmadillo snowfall]; };
 htmlTable = derive { name="htmlTable"; version="1.3"; sha256="00zcismapanyb68657gng5l6g3hsmpls84naracshj4gfk2l1cfs"; depends=[knitr magrittr stringr]; };
 htmltools = derive { name="htmltools"; version="0.2.6"; sha256="1gp6f6388xy3cvnb08q08vraidjp740gfxlafdd19m2s04v5hncz"; depends=[digest]; };
-htmlwidgets = derive { name="htmlwidgets"; version="0.4"; sha256="079y3b3d4na582a1wmb5nc5cyrmmld4v7c1vc08cbfsg43w026zn"; depends=[htmltools jsonlite yaml]; };
-hts = derive { name="hts"; version="4.4"; sha256="1dpm669lc4khjkcs49m1nh7i61sclsqy7xbcn4mqqjhfgs7sg7sk"; depends=[forecast SparseM]; };
+htmlwidgets = derive { name="htmlwidgets"; version="0.5"; sha256="1d583kk7g29r4sq0y1scri7fs48z6q17c051nyjywcvnpy4lvi8j"; depends=[htmltools jsonlite yaml]; };
+hts = derive { name="hts"; version="4.5"; sha256="1bjribmfczkx139z73b0cl3lzlw5n2byyyc5inqv9qgayz0dc6cp"; depends=[forecast Matrix Rcpp RcppEigen SparseM]; };
 httk = derive { name="httk"; version="1.2"; sha256="016njh1cm21bmdrn94cbsmf36gzcwfg21bqp8nl100qb16d6yqq6"; depends=[deSolve msm]; };
 httpRequest = derive { name="httpRequest"; version="0.0.10"; sha256="0f6mksy38p9nklsr44ki7a79df1f28jwn2jfyb6f9kbjzh98746j"; depends=[]; };
 httpuv = derive { name="httpuv"; version="1.3.2"; sha256="0vp3bz1nxi0ladlgi1r6wd480y0m2m0gsba2hrs73s9b8afrfh6v"; depends=[Rcpp]; };
-httr = derive { name="httr"; version="0.6.1"; sha256="111l6ygwnrzcqwny6ds62np0r2f6x0il7abapq00j1y86nk4p6l6"; depends=[digest jsonlite mime R6 RCurl stringr]; };
+httr = derive { name="httr"; version="1.0.0"; sha256="1yprw8p4g8026jhravgg1hdwj1g51cpdgycyr5a58jwm4i5f79cq"; depends=[curl digest jsonlite mime R6 stringr]; };
 huge = derive { name="huge"; version="1.2.6"; sha256="11njfd4i8q950apga6sdk84p4wk4qvp8bpg6yz9lgjrgj2hn14n2"; depends=[igraph lattice MASS Matrix]; };
 humanFormat = derive { name="humanFormat"; version="1.0"; sha256="0zwjbl8s5dx5d57sfmq6myc6snximc56zl88h8y1s1jqphyn9sir"; depends=[testthat]; };
 hwde = derive { name="hwde"; version="0.64"; sha256="1is39zknssqm98577sdjg8gn3h9wsraih19a9nd6n8mxdcsqivh4"; depends=[]; };
@@ -4041,7 +4044,7 @@ hypervolume = derive { name="hypervolume"; version="1.3.0"; sha256="07pnbkdqm4js
 hypothesestest = derive { name="hypothesestest"; version="1.0"; sha256="0g8sm386m1zm9i3900r62x83wb600cy8hqk7dlvbx6wcgrxg82sm"; depends=[]; };
 hysteresis = derive { name="hysteresis"; version="2.5"; sha256="1b1dd2367pjbg4jnn65l2jcj38ljz7adpdg8f5b9rj1rw7qgikfl"; depends=[car MASS msm]; };
 hzar = derive { name="hzar"; version="0.2-5"; sha256="000l4ki3hvznnhkxc5j422h5ifnsfqalv666j48yby1hsf1lc3kg"; depends=[coda foreach MCMCpack]; };
-iBATCGH = derive { name="iBATCGH"; version="1.2"; sha256="0py83q8fcrh0kjysvljx22b7s2gsccq19rzvwf3alq8vl59sm48i"; depends=[msm Rcpp RcppArmadillo]; };
+iBATCGH = derive { name="iBATCGH"; version="1.3"; sha256="0pnkkabzi57czcwd9i15nwv8ggwvyxmvn1wam7yrrrbvmi17lmrm"; depends=[msm Rcpp RcppArmadillo]; };
 iBUGS = derive { name="iBUGS"; version="0.1.4"; sha256="0vsxy8pnbix0rg7ksgywx7kypqb5ngkxhldh3cisjkvdv638ybps"; depends=[gWidgetsRGtk2 R2WinBUGS]; };
 iC10 = derive { name="iC10"; version="1.1.2"; sha256="1ncxdjw9ary0bs3fvnvyqp356gi4wa177sllkizq71fzn75a03x3"; depends=[iC10TrainingData pamr]; };
 iC10TrainingData = derive { name="iC10TrainingData"; version="1.0.1"; sha256="1x1kgxiib9l7whm2kmbv1s912hgpl7rdpqpn67nlkiswnr27hqn4"; depends=[]; };
@@ -4050,6 +4053,7 @@ iDynoR = derive { name="iDynoR"; version="1.0"; sha256="01702vl10191mbq2wby1m0y6
 iFad = derive { name="iFad"; version="3.0"; sha256="0jrl9bayihp3wb4k5w9kc71qlsdxk7vl83ydfibx2bg79c4hf3cs"; depends=[coda MASS Rlab ROCR]; };
 iFes = derive { name="iFes"; version="1.0"; sha256="0in6wy6w567188gylnlvcsk3r3w2nln9h60rj7ng1qwqawrvgwxp"; depends=[doParallel foreach ROCR]; };
 iGasso = derive { name="iGasso"; version="1.2"; sha256="123487slizsmw5b0imwqll8n03navx30kvawr6jfibbjfdd8vfn7"; depends=[CompQuadForm lattice]; };
+iNEXT = derive { name="iNEXT"; version="2.0.3"; sha256="1b9sq19g3qd1q47bmgsw16lwn3r7wgrbiiaa8pc67lbrar5iip9v"; depends=[ggplot2]; };
 iRefR = derive { name="iRefR"; version="1.13"; sha256="17kjfga62xc4s1kii5clxszbag2dr1dyxfm7jasr20prx28ya6pp"; depends=[graph igraph RBGL]; };
 iRegression = derive { name="iRegression"; version="1.2"; sha256="1fn25xnrvgx2ayhss136rxn1h3c9pvq2gmb5kbp92vsf07klvh6v"; depends=[mgcv]; };
 iRepro = derive { name="iRepro"; version="1.0"; sha256="1knncn47pl411r31z1r5ipsiyagcpjbc2gb972n7l3539pcpf0zy"; depends=[]; };
@@ -4068,8 +4072,9 @@ icamix = derive { name="icamix"; version="1.0.2"; sha256="0rpqx9q5p3nb5gd76zlkql
 icapca = derive { name="icapca"; version="1.1"; sha256="131gdrk8vsbac0krmsryvsp21bn9hzxqxq847zn16cxjf6y5i3xb"; depends=[]; };
 iccbeta = derive { name="iccbeta"; version="1.0"; sha256="0zsf2b5nrv39pssi5walf82892fr8p1f802c96hjjknh78q7gh0h"; depends=[lme4 Rcpp RcppArmadillo]; };
 icd9 = derive { name="icd9"; version="1.2"; sha256="0d0dgd5951chyfimzjb00cphdvqzml8p8wr7sad3qfhv44dsypn7"; depends=[checkmate Rcpp]; };
-icenReg = derive { name="icenReg"; version="1.2.4"; sha256="0fqwg1xmks9zkmbnr1dala4b13l85ibqfd96w4vvrfhmvakqra1r"; depends=[foreach survival]; };
+icenReg = derive { name="icenReg"; version="1.2.5"; sha256="1qw0c0y0hykb79p55lnvjk9zbxr0gva299i46cj8clcwyh2ivfga"; depends=[foreach survival]; };
 icensmis = derive { name="icensmis"; version="1.2.1"; sha256="1h4l9irip4hv34hr92j8756qgmy455mfdblr7ypgsgvr27cgax8h"; depends=[Rcpp]; };
+icsw = derive { name="icsw"; version="0.9"; sha256="0lmq9l9sy0fz3yjj2sj8f19iy26913caibf7d9zb9w9n6cqskvlx"; depends=[]; };
 idbg = derive { name="idbg"; version="1.0"; sha256="1rxmj04hswxybrg7dfib3mjy8v8mdiv13zwbscp2q55z55hhf1m5"; depends=[]; };
 identity = derive { name="identity"; version="0.2-1"; sha256="1j5wb5cj5j49in2g6r1shdm4ri4cfzj22hpqazvcmq4dm291sdi9"; depends=[]; };
 idm = derive { name="idm"; version="1.0"; sha256="001zvhw38qgq1l66yxz5kchvjspijdvqwgrdvh5ykiqifi8kc5xm"; depends=[animation ca corpcor dummies ggplot2]; };
@@ -4080,14 +4085,14 @@ ifctools = derive { name="ifctools"; version="0.3.1"; sha256="0lr1d4z2gzninqchfz
 ifs = derive { name="ifs"; version="0.1.4"; sha256="0fzani8rnn4rdwlghq967hhi4zfjnk3gwpk3v6wys738xj7yfwp1"; depends=[]; };
 ifultools = derive { name="ifultools"; version="2.0-1"; sha256="16lrmajyfa15akgjq71w9xlfsr4y9aqfw7y0jf6gydaz4y6jq9b9"; depends=[MASS splus2R]; };
 ig_vancouver_2014_topcolour = derive { name="ig.vancouver.2014.topcolour"; version="0.1.2.0"; sha256="0yclvm6xppf4w1qf25nf82hg1pliah68z7h3f683svv0j62q748h"; depends=[]; };
-igraph = derive { name="igraph"; version="0.7.1"; sha256="1nvb30zjjw861idbd8zap9qqg22k87zdi6qqvjf1s29v7hkx7kq7"; depends=[Matrix]; };
-igraphdata = derive { name="igraphdata"; version="0.2.2"; sha256="0lmgz9zglz0rn0iyjs9kdcm1xp09kh21sv91wnj74666jp0wsg4x"; depends=[]; };
+igraph = derive { name="igraph"; version="1.0.1"; sha256="00jnm8v3kvxpxav5klld2z2nnkcpj4sdwv4ksipddy5mp04ysr6w"; depends=[irlba magrittr Matrix NMF]; };
+igraphdata = derive { name="igraphdata"; version="1.0.0"; sha256="1b8almybmsgmjhp6lhxqqbv34kn2hpw9b08g911ip89hmlypd97s"; depends=[]; };
 igraphtosonia = derive { name="igraphtosonia"; version="1.0"; sha256="0vy9jnpjp68l8s0hi1l57j9p41c543h3iqv16pwl550f38zqp8j6"; depends=[igraph]; };
 ihs = derive { name="ihs"; version="1.0"; sha256="1c5c9l6kdalympb19nlgz1r9zq17575ivp3zrayb9p6w3fn2i06h"; depends=[maxLik]; };
 iki_dataclim = derive { name="iki.dataclim"; version="1.0"; sha256="1yhvgr8d3j2r8y9c02rzcg80bz4cx58kzybm4rch78m0207wqs7p"; depends=[climdex_pcic lubridate PCICt zoo]; };
 ilc = derive { name="ilc"; version="1.0"; sha256="0hs0nxv7cd300mfxscgvcjag9f2igispcskfknb7sn7p8qvwr5ki"; depends=[date demography forecast rainbow survival]; };
 imguR = derive { name="imguR"; version="1.0.0"; sha256="0yhlir0qxi6hjmqlmmklwd4vkymc5bzv9id9dlis1fr1f8a64vwp"; depends=[httr jpeg png RCurl]; };
-import = derive { name="import"; version="1.0.2"; sha256="1m6xnj08faf5ahb0ga4z13x3pwhvw2gh4wg72m9wcfcyr0rp74lx"; depends=[]; };
+import = derive { name="import"; version="1.1.0"; sha256="0blf9539rbfwcmw8zsb4k58slb4pdnc075v34vmyjw752fznhcji"; depends=[]; };
 imprProbEst = derive { name="imprProbEst"; version="1.0.1"; sha256="09y8yd9sw0b79ca45ryi7p82vy5s8cx0gg603rlc39lgwcdv45i3"; depends=[inline lpSolve]; };
 imputeLCMD = derive { name="imputeLCMD"; version="2.0"; sha256="10v3iv1iw6mnss6ry836crq9zdgid2y1h3pvigzjsrmnp5n89mfz"; depends=[impute norm pcaMethods tmvtnorm]; };
 imputeMDR = derive { name="imputeMDR"; version="1.1.2"; sha256="0ds5a4wav9vb9z5nji8hv5l76310rd970xf702fd0ckx1sh6rgd7"; depends=[]; };
@@ -4095,7 +4100,6 @@ imputeR = derive { name="imputeR"; version="1.0.0"; sha256="18rx70w7xb33m84ifxl3
 in2extRemes = derive { name="in2extRemes"; version="1.0-1"; sha256="0k5qczs54b7bl71my8xmnqly91g7c5skj0lm2g8dk4hgrx6wwsrf"; depends=[extRemes]; };
 inTrees = derive { name="inTrees"; version="1.1"; sha256="1b88zy4rarcx1qxzv3089gzdz1smga6ssj8cxxccyyzci6px85j1"; depends=[arules gbm RRF xtable]; };
 inarmix = derive { name="inarmix"; version="0.4"; sha256="11a1vaxq22d5lab07jp5pw0znkaqj6bmkn6vsx62y6m4mmqk04yr"; depends=[Matrix Rcpp]; };
-incReg = derive { name="incReg"; version="1.0"; sha256="1kckx64hn8g9wvjg7g9xild5hclim1rs7z2m7rgmbdwlbayxpwgv"; depends=[car]; };
 indicoio = derive { name="indicoio"; version="0.3"; sha256="04c2j4l103fiiibf83z7iq95wfnlv9rj46cyp9xy68bzqkbwdi3m"; depends=[httr png rjson stringr]; };
 indicspecies = derive { name="indicspecies"; version="1.7.5"; sha256="16m4pnfnmaskin4aaalm2cmv3vwzg94045max8nhkgw02kpskz1r"; depends=[permute]; };
 ineq = derive { name="ineq"; version="0.2-13"; sha256="09fsxyrh0j7mwmb5hkhmrzgcy7kf85jxkh7zlwpgqgcsyl1n91z0"; depends=[]; };
@@ -4123,9 +4127,10 @@ intamapInteractive = derive { name="intamapInteractive"; version="1.1-10"; sha25
 intcox = derive { name="intcox"; version="0.9.3"; sha256="1m1lzmymh2pk570k6nxq3nj7wxkvs1s3nvz8cb456fnv72ng8fap"; depends=[survival]; };
 interAdapt = derive { name="interAdapt"; version="0.1"; sha256="06ki36l1mrnd9lbm696a6gapr488dz8na4wvl9y1fif9hfv4zk25"; depends=[knitcitations knitr mvtnorm RCurl shiny]; };
 interferenceCI = derive { name="interferenceCI"; version="1.1"; sha256="19ky10nn6ygma6yy5h1krxx61aikh3yx5y39p68a944mz8f72vsn"; depends=[gtools]; };
-intergraph = derive { name="intergraph"; version="2.0-1"; sha256="03ycay3x4wd3j7r0mad9qgi4h77krapg613ans3jf9qa4ys2njlv"; depends=[igraph network]; };
+intergraph = derive { name="intergraph"; version="2.0-2"; sha256="1ipxdrfxhcxhcbqvrzqh3impwk4xryqlqlgjl7f2mwrf365zs6ph"; depends=[igraph network]; };
 internetarchive = derive { name="internetarchive"; version="0.1.2"; sha256="08gbkqbzx963c1jy3a540fsd0ff9ylr7la1clwjn46lp4cc4yv1h"; depends=[dplyr httr jsonlite]; };
-interpretR = derive { name="interpretR"; version="0.2.2"; sha256="048qhq9mf3qna48v8ml7hfa7imrsrhrl0hrb44arh1ik3i5a2xx6"; depends=[AUC randomForest]; };
+interplot = derive { name="interplot"; version="0.1.0.1"; sha256="0a5n4s35v4vxfcynq9dpymc9dfwr0p1zf2974yljgsh5az6iarjk"; depends=[abind arm ggplot2]; };
+interpretR = derive { name="interpretR"; version="0.2.3"; sha256="1y2j91dm0p6yy9qwkllmlmk8n2b9ics4d40cmq8b0fk3rk61vh59"; depends=[AUC randomForest]; };
 interval = derive { name="interval"; version="1.1-0.1"; sha256="1lln9jkli28i4wivwzqrsxvv2n15560f7msjy5gssrm45vxrxms8"; depends=[Icens MLEcens perm survival]; };
 intervals = derive { name="intervals"; version="0.15.0"; sha256="0lvxaq5ia7hj65n00awz454a2vdxpskxjw45wsakgh0sc60hk8yz"; depends=[]; };
 interventionalDBN = derive { name="interventionalDBN"; version="1.2.2"; sha256="0wpp4bfi22ncvl0vdivniwwvcqgnpifpgxb4g5jbyvr0z735cd9w"; depends=[]; };
@@ -4143,6 +4148,7 @@ ipfp = derive { name="ipfp"; version="1.0"; sha256="1hpfbgygnpnl3fpx7zl728jyw00y
 iplots = derive { name="iplots"; version="1.1-7"; sha256="052n8jdhj8gy72xlr23dwd5gqycqnph7s1djg1cdx2f05iy693y6"; depends=[png rJava]; };
 ipred = derive { name="ipred"; version="0.9-4"; sha256="0rig1sj0jqv2rrkgcr6fhr8477wxirxwnwk533l7rn6qr90prjwp"; depends=[class MASS nnet prodlim rpart survival]; };
 ips = derive { name="ips"; version="0.0-7"; sha256="0r4394xbchv6czad9jz4ijnfz8ss3wfdvh7ixrdxic2xrw0ic90v"; depends=[ape colorspace XML]; };
+iptools = derive { name="iptools"; version="0.2.0"; sha256="010vqz8rnaljjk0prcbsx25aqkrr78x32vcbx8589vwlvy10ka0f"; depends=[BH Rcpp]; };
 iqLearn = derive { name="iqLearn"; version="1.3"; sha256="05f2spnzyqzbbgwz9llf4x5r6fsz5gxa1ckykv6wxg4sirdqccm1"; depends=[]; };
 irace = derive { name="irace"; version="1.06"; sha256="10dizzjds1aszvyh0fn6ahqvgn2x6sg3lwb7rca8zhgphrjg92bl"; depends=[]; };
 irlba = derive { name="irlba"; version="1.0.3"; sha256="1h2ymk9hg9xj2075w715742j23jl7kqa4cgzl1jvr48gcysq5byy"; depends=[Matrix]; };
@@ -4168,11 +4174,10 @@ itertools = derive { name="itertools"; version="0.1-3"; sha256="1ls5biiva10pb1dj
 itertools2 = derive { name="itertools2"; version="0.1.1"; sha256="0yra3x9ddvn5pp3jibm69205zazv81bz0cflw4mdvxpqadaf9f96"; depends=[iterators]; };
 itree = derive { name="itree"; version="0.1"; sha256="164zgr142hcp9plnbccs6m823p4m0prk73bvp54bc7bqnqmc3d9a"; depends=[]; };
 its = derive { name="its"; version="1.1.8"; sha256="1g9qmdrw7qiw0xiryf7bf5m9prrba7r11jyzprzdglc1akizav8a"; depends=[Hmisc]; };
-itsadug = derive { name="itsadug"; version="0.8"; sha256="1lphbw1d1x1bs625rnr9jl3zyaqr8rka8d0v2v3cf3crywc3lzhn"; depends=[mgcv]; };
+itsadug = derive { name="itsadug"; version="1.0.1"; sha256="0vazyg5pqvp9iidkhbm33l0g1sb8q3f6mig03ss8biia0hg2qb5i"; depends=[mgcv]; };
 itsmr = derive { name="itsmr"; version="1.5"; sha256="0l9m5is6d6pkpfkihx0jir5iv8zmqqav8vh9bkkpqv5iz61p4kxb"; depends=[]; };
 ivbma = derive { name="ivbma"; version="1.05"; sha256="0d7kg6pkdx1aj1i6kqs2r7j1klxxwymml63qnrq6a6fia3ck9kk9"; depends=[]; };
 ivfixed = derive { name="ivfixed"; version="1.0"; sha256="0a26zrkvz0ffq4zxdx5vhr1nvsi9c15s6gvc1zy2pddjz31x2xi5"; depends=[Formula]; };
-ivivc = derive { name="ivivc"; version="0.2.2"; sha256="1qychbszcg9lmbmrnpv65xcv1i5k2xarsa374fs6gw7zlp5nrvap"; depends=[deSolve minpack_lm optimx png reshape sciplot]; };
 ivlewbel = derive { name="ivlewbel"; version="1.1"; sha256="0ykcfikm2i28s3fm6zzx8cjvpwhksg8an0rfr0b35gf7p69brgag"; depends=[gmm lmtest plyr]; };
 ivmodel = derive { name="ivmodel"; version="1.0"; sha256="14ic49vyikx5fiz2ccjmd53f0vcg3jh3fs6fqhl8w3hm9z9x4qvz"; depends=[Matrix]; };
 ivpack = derive { name="ivpack"; version="1.2"; sha256="0cr5acjrn41d3q0b77hlg2jmsbf1msvys9gcavm1blsryg2bc03c"; depends=[AER lmtest sandwich]; };
@@ -4182,15 +4187,15 @@ jSonarR = derive { name="jSonarR"; version="1.1.1"; sha256="054q3ly471xa64yyz2as
 jaatha = derive { name="jaatha"; version="2.7.0"; sha256="1ibk84x38j03hbdrf9pi0bi025fxlk2ysqxmfrqiqr4zq2rzhbvp"; depends=[phyclust Rcpp reshape2]; };
 jackstraw = derive { name="jackstraw"; version="1.0"; sha256="1irfzivy7c9fb2pr98flx05s5hkk6sid1hkd5b3k9m9mgs6ixbfy"; depends=[corpcor]; };
 jagsUI = derive { name="jagsUI"; version="1.3.7"; sha256="1zdrqxzjip4lgf99b4z76gvlhbmh0gcbkpghrlrj3j25wqzgn5y0"; depends=[coda lattice rjags]; };
-james_analysis = derive { name="james.analysis"; version="1.0.0"; sha256="01nbwhph22nfl0biwcgvb1q76jp79qj7qfn2fxpyx2dkkhzxzrmv"; depends=[naturalsort rjson]; };
+james_analysis = derive { name="james.analysis"; version="1.0.1"; sha256="1b2n4ds4ivfk564z87s2rxjl9j0y4drd3cmyv8jqpccmdvx1137d"; depends=[naturalsort rjson]; };
 jiebaR = derive { name="jiebaR"; version="0.5"; sha256="1x41jqc1ai3v1fn9f65dk7k4g2llf3pk9z3bwqihb95qf80mhd4v"; depends=[jiebaRD Rcpp]; };
 jiebaRD = derive { name="jiebaRD"; version="0.1"; sha256="1wadpcdca4pm56r8q22y4axmqdbb2dazsh2vlhjy73rpymqfcph4"; depends=[]; };
 jmetrik = derive { name="jmetrik"; version="1.0"; sha256="0xnbvby03fqbxgg0i0qxrrzjv98783n6d7c1fywj81x487qlj77j"; depends=[]; };
 joineR = derive { name="joineR"; version="1.0-3"; sha256="0q98nswbxk5dz8sazzd66jhlg7hv5x7wyzcvjc6zkr6ffvrl8xj7"; depends=[boot gdata lattice MASS nlme statmod survival]; };
-joint_Cox = derive { name="joint.Cox"; version="1.1"; sha256="1zkj9ynxq521s23dz93m63valjf4amm19dcmcm8844fvnzbr7z4h"; depends=[]; };
+joint_Cox = derive { name="joint.Cox"; version="2.0"; sha256="0fdplzyh0ayw5d4b5rc9miisnwn5anmf8dv0a4dxnqnndjc2hjpx"; depends=[]; };
 jointDiag = derive { name="jointDiag"; version="0.2"; sha256="0y1gzrc79vahfhn4jrj5xys8pmkzxj4by7361730gi347f0frs0a"; depends=[]; };
 jointPm = derive { name="jointPm"; version="2.3.1"; sha256="1c2cn9sqwfyv9ksd63w8rrz0kh18jm2wv2sfdkgncjb7vfs4hbv9"; depends=[]; };
-jomo = derive { name="jomo"; version="1.1-0"; sha256="109k9cpkf8wpw1z0g1ilglydx1k9jki2a675q6b19ip2zf2cinsz"; depends=[]; };
+jomo = derive { name="jomo"; version="1.2-0"; sha256="1vwvmxyndrxyyw9slwbkpa0kap8ymc3pqc4k0pxhwjgpy7k1xyvx"; depends=[]; };
 jpeg = derive { name="jpeg"; version="0.1-8"; sha256="05hawv5qcb82ljc1l2nchx1wah8mq2k2kfkhpzyww554ngzbwcnh"; depends=[]; };
 js = derive { name="js"; version="0.2"; sha256="1dxyyrmwwq07l6pdqsvxscpciy4h1021h9ymx8hi2vqvv0mdrz76"; depends=[V8]; };
 jsonlite = derive { name="jsonlite"; version="0.9.16"; sha256="12whrj9shnf8wd3a5yi9zcvinhgvik9nb2wp6202j869jdwxq5ym"; depends=[]; };
@@ -4200,12 +4205,13 @@ kappaSize = derive { name="kappaSize"; version="1.1"; sha256="0jrjal8cvy2yg0qiyi
 kappalab = derive { name="kappalab"; version="0.4-6"; sha256="0dmzy0d7azzfpnzbf8b7a6zgmmfwzfiybz8610asajyfsj36gszl"; depends=[kernlab lpSolve quadprog]; };
 kaps = derive { name="kaps"; version="1.0.2"; sha256="0jg4smbq51v88i3815icb284j97iam09pc52rv3izxa57nv9a0gz"; depends=[coin Formula survival]; };
 kcirt = derive { name="kcirt"; version="0.6.0"; sha256="1gm3c89i5dq7lj8khc12v30j1c0l1gwb4kv24cyy1yw6wg40sjig"; depends=[corpcor mvtnorm snowfall]; };
-kdecopula = derive { name="kdecopula"; version="0.0.1"; sha256="100b3adwm95zspzzfm9lcbfic71knvzn2d3hs4k4mq187339sdlg"; depends=[cubature lattice locfit Rcpp RcppArmadillo VineCopula]; };
+kdecopula = derive { name="kdecopula"; version="0.0.2"; sha256="11cg9avdsdrkffbapxm9qskr0xplvs1djzrpk8gp5wknvmlg483z"; depends=[cubature lattice locfit Rcpp RcppArmadillo VineCopula]; };
 kdetrees = derive { name="kdetrees"; version="0.1.5"; sha256="1plf2yp2vl3r5znp5j92l6hx1kgj0pzs7ffqgvz2nap5nf1c6rdg"; depends=[ape distory ggplot2]; };
 kedd = derive { name="kedd"; version="1.0.2"; sha256="11mfgjr1pl56y4rcychs8xjgazy3vhg1xasr37fd0g32g7w3lxqg"; depends=[]; };
 kelvin = derive { name="kelvin"; version="1.2-2"; sha256="0fl2yxc0dpmkhq3f7711gd08i7jlzlfncin1d6q251dfnmwd7rzf"; depends=[Bessel]; };
 kequate = derive { name="kequate"; version="1.4.0"; sha256="0vr45y4f6x3080pf3k53nifavf8mfhikz54nis66c53fs9rp0jwf"; depends=[equateIRT ltm]; };
 kerdiest = derive { name="kerdiest"; version="1.2"; sha256="16xj2br520ls8vw5qksxq9hqlpxlwmxccfk5balwgk5n2yhjs6r3"; depends=[chron date evir]; };
+kergp = derive { name="kergp"; version="0.1.0"; sha256="00p3iziz6kjm1v7rpqa2lls1xgp2w3q754mj1x6bj24kx69xpc7g"; depends=[MASS numDeriv Rcpp testthat]; };
 kernelFactory = derive { name="kernelFactory"; version="0.2.2"; sha256="1ms6732s17vx120xr2l423qmj0h880r522zsgp474pq3fxc0mr48"; depends=[AUC genalg kernlab randomForest]; };
 kernlab = derive { name="kernlab"; version="0.9-20"; sha256="0gwl3v8gxidzfmvwa2icqla8ypdgnmvcwxf54iwrvvy2csjx0w27"; depends=[]; };
 keypress = derive { name="keypress"; version="1.0.0"; sha256="16msbanmbv2kf09qvl8bd9rf1vr7xgcjzjhzngyfyxv90va3k86b"; depends=[]; };
@@ -4213,7 +4219,7 @@ kfigr = derive { name="kfigr"; version="1.1.0"; sha256="1mnnd603s741h1vp99q6d8lw
 kimisc = derive { name="kimisc"; version="0.2-1"; sha256="1nbhw1q0p87w4z326wj5b4k0xdv0ybkgcc59b3cqbqhrdx8zsvql"; depends=[plyr]; };
 kin_cohort = derive { name="kin.cohort"; version="0.6"; sha256="13gnjk58m5kya9wj87klwm6h7cdqi61ba6y0cg9k1hgbc1ajy3s8"; depends=[survival]; };
 kineticF = derive { name="kineticF"; version="1.0"; sha256="1k54zikgva9fw9c4vhkc9b0kv8sq5pmc962s8wxr6qv97liv9p46"; depends=[circular lqmm MASS plotrix sp splancs]; };
-kinfit = derive { name="kinfit"; version="1.1.13"; sha256="1av33f4wns6qp79wyww70f7fsfybcqm83nby1ia65sjp2dz04dk1"; depends=[]; };
+kinfit = derive { name="kinfit"; version="1.1.14"; sha256="0gb43pghgllb9gzh8jzzpfmc46snv02ln4g3yqsdah3cyqnck0ih"; depends=[]; };
 kinship2 = derive { name="kinship2"; version="1.6.0"; sha256="06f544yk61i1xq0rm0r5gpzwfl6rvzyg7gz8z86bjyxg0z44h3vy"; depends=[Matrix quadprog]; };
 kintone = derive { name="kintone"; version="0.1.1"; sha256="13c82vkapks9j2crrb4awnhl60ld8b1r7xmy9yv4zzch868kcl5g"; depends=[RCurl rjson]; };
 kissmig = derive { name="kissmig"; version="1.0-3"; sha256="1pi1x3gdbqrhr1km1hqj15k8wyrgs697fnxgjgxga1irbn8bi482"; depends=[raster]; };
@@ -4230,6 +4236,7 @@ kml = derive { name="kml"; version="2.3.1"; sha256="1bnd8ssbhijxd9c9x7qn96jdkj1f
 kml3d = derive { name="kml3d"; version="2.3"; sha256="0dlpxp8bbrwgblrl1hnc1ip592abc6sdcl87s4m6jwgfaxjcq7a8"; depends=[clv kml longitudinalData misc3d rgl]; };
 kmlcov = derive { name="kmlcov"; version="1.0.1"; sha256="09s9ganfsnwp22msha78g6pjr45ppyfyqjf6ci64w3w15q5qlcd9"; depends=[]; };
 kmodR = derive { name="kmodR"; version="0.1.0"; sha256="1y1pqrrralklflyb1dw8bslfcyqrw8ryijfbhkwba7ykpxcf9fda"; depends=[]; };
+knitLatex = derive { name="knitLatex"; version="0.9.0"; sha256="1igacc2sx8897wmnhh8kngd0fq6zqbi30chy5c8jw60zc38mi3wi"; depends=[knitr]; };
 knitcitations = derive { name="knitcitations"; version="1.0.6"; sha256="18jfrzazbk8cy9i7qvmmrn8c5cmkxvmdd894jpvak2gplxvsdx91"; depends=[digest httr RefManageR]; };
 knitr = derive { name="knitr"; version="1.10.5"; sha256="1qxpsnjwb4bdq44k3nglfrznpvqaqj18njx4imbpk3njzcjif7a7"; depends=[digest evaluate formatR highr markdown stringr yaml]; };
 knitrBootstrap = derive { name="knitrBootstrap"; version="0.9.0"; sha256="1cw5dvhjiypk6847qypxphfl9an54qjvd6qv029znhwijsg56mmg"; depends=[knitr markdown]; };
@@ -4237,7 +4244,7 @@ knnGarden = derive { name="knnGarden"; version="1.0.1"; sha256="1gmhgr42l6pvc6pz
 knnIndep = derive { name="knnIndep"; version="2.0"; sha256="1fwkldgs2994svf3sj90pwsfx6r22cwwa22b30hdmd24l8v9kzn7"; depends=[]; };
 knncat = derive { name="knncat"; version="1.2.2"; sha256="1d392910y3yy46j8my1a7m0xkij2rc6vwq5fg22qk00vqli8drz2"; depends=[]; };
 knockoff = derive { name="knockoff"; version="0.2.1"; sha256="197icnyxxmi6f0v0p2zm4910grbgkfjkd3xql79ny04ik047v0kp"; depends=[glmnet RJSONIO]; };
-koRpus = derive { name="koRpus"; version="0.05-5"; sha256="03rw0yb67y652j8hcr5m4c0py0rr3gp87y0hdxpypd81rkikwhfm"; depends=[]; };
+koRpus = derive { name="koRpus"; version="0.05-6"; sha256="00mvdk9akicvy61bx83iyfzaamwpsjk0w7xg6yg26581dbc7wif1"; depends=[]; };
 kobe = derive { name="kobe"; version="1.3.2"; sha256="1z64jwrq6ddpm22cvk2swmxl1j7qyz0ddk3880c7zfq6gk7f9bxl"; depends=[coda emdbook ggplot2 MASS plyr reshape]; };
 kofnGA = derive { name="kofnGA"; version="1.1"; sha256="1ykk3rmyrv8c556rl3wp0i1d522dghaq4qk5acg06hhk9j9962fg"; depends=[]; };
 kohonen = derive { name="kohonen"; version="2.0.18"; sha256="08inl7rx30gjpqbdbhccy65bingimzgi4lckfvs0r6lba04a1f8l"; depends=[class MASS]; };
@@ -4259,7 +4266,7 @@ kzs = derive { name="kzs"; version="1.4"; sha256="1srffwfg0ps8zx0c6hs2rc2y2p01qj
 l2boost = derive { name="l2boost"; version="1.0"; sha256="1p0sbvlnax4ba4wjkh3r0bmjs601k590g7bdfk6wxvlj42jxcnkl"; depends=[MASS]; };
 laGP = derive { name="laGP"; version="1.1-5"; sha256="15p958c95a68gr2xs8aw0l0sp0appv6islfbidlvxm8ph252hw6d"; depends=[tgp]; };
 labdsv = derive { name="labdsv"; version="1.7-0"; sha256="1r5vbmdijcrw0n3phdmfv8wiy7s08pidvhac4pnsxfmf98f74jby"; depends=[cluster MASS mgcv rgl]; };
-label_switching = derive { name="label.switching"; version="1.3"; sha256="05kbxvrp0lm5913lhy7pgxr9cq64sm5hiz6ydmmgfmbmfirrcqyx"; depends=[combinat lpSolve]; };
+label_switching = derive { name="label.switching"; version="1.4"; sha256="1b498l3zb05yywkx8lbd9q9h92md2n4kyjvq62903k1wqp65nhvj"; depends=[combinat lpSolve]; };
 labeledLoop = derive { name="labeledLoop"; version="0.1"; sha256="0gq392h0sab8k7k8bzx6m7z5xpdsflldhwbpdf92zbmkbzxsz00m"; depends=[]; };
 labeling = derive { name="labeling"; version="0.3"; sha256="13sk7zrrrzry6ky1bp8mmnzcl9jhvkig8j4id9nny7z993mnk00d"; depends=[]; };
 labeltodendro = derive { name="labeltodendro"; version="1.3"; sha256="13kpmv26zzjf5iwpr4vs797irplmaixp1agx5v80wr4lvd2hirvg"; depends=[]; };
@@ -4281,38 +4288,39 @@ lasso2 = derive { name="lasso2"; version="1.2-19"; sha256="0zkwjsd42a6z4gylq9xbs
 lassoscore = derive { name="lassoscore"; version="0.6"; sha256="1i3i07da8sw9w47rcflhylz8zxvzkyycbc1a4gf6hbcpp21rqd7d"; depends=[glasso glmnet Matrix]; };
 lassoshooting = derive { name="lassoshooting"; version="0.1.5-1"; sha256="0ixjw8akplcfbzwyry9p4bhbcm128yghz2bjf9yr8np6qrn5ym22"; depends=[]; };
 latdiag = derive { name="latdiag"; version="0.2-1"; sha256="1xjy6as3wjrl2y1lc5fgrbhqqcvrhdan89mpgvk9cpx71wxv95vc"; depends=[]; };
-latentnet = derive { name="latentnet"; version="2.7.0"; sha256="0g0a2s00f6rc9r6vmwm32489qqiwihcllmypc2wgqwayfmy8innn"; depends=[abind coda ergm mvtnorm network sna statnet_common]; };
+latentnet = derive { name="latentnet"; version="2.7.1"; sha256="0bjac9cid11pmhmi2gb4h3p4h9m57ngxx7p73a07afmfjk9p7h5m"; depends=[abind coda ergm mvtnorm network sna statnet_common]; };
+latex2exp = derive { name="latex2exp"; version="0.3.1"; sha256="09sk3zs5ip4xm3q7pzhmp7nnwjkwr5x1v4y1afccl6px04qdkd6j"; depends=[magrittr stringr]; };
 lattice = derive { name="lattice"; version="0.20-31"; sha256="1b3m3rg1zd8ssk5jjswk5y93js89vh6939kfajh6i6wphndxigb1"; depends=[]; };
 latticeDensity = derive { name="latticeDensity"; version="1.0.7"; sha256="1y33p8hfmpzn8zl4a6zxg1q3zx912nhqlilca6kl5q156zi0sv3d"; depends=[spam spatstat spdep splancs]; };
 latticeExtra = derive { name="latticeExtra"; version="0.6-26"; sha256="16x00sg76mga8p5q5ybaxs34q0ibml8wq91822faj5fmg7r1050d"; depends=[lattice RColorBrewer]; };
-lava = derive { name="lava"; version="1.4.0"; sha256="0zf62xk2j1gbwxqglq6lsxs3f7fb0hynnlfh1w870xz8imgf20yp"; depends=[numDeriv]; };
+lava = derive { name="lava"; version="1.4.1"; sha256="1xwyfn31nr8sppxy25a7p8yhf5isq4ah0dd45plhfclnlwrycr1l"; depends=[numDeriv]; };
 lava_tobit = derive { name="lava.tobit"; version="0.4-7"; sha256="1da98d5pndlbbw37k64fmr2mi1hvkhjxsmm3y9p4b772pz9i1pvj"; depends=[lava mvtnorm survival]; };
 lavaan = derive { name="lavaan"; version="0.5-18"; sha256="0ih5wvhmxln3w5h7q5w6gsmbs3w8118l9hc2afgsnzpg8a5jy1n3"; depends=[MASS mnormt pbivnorm quadprog]; };
 lavaan_survey = derive { name="lavaan.survey"; version="1.1"; sha256="1vscv165kilkc00pgs2s9qn404l3rv45zc9kzmrghxz42jsy04zc"; depends=[lavaan MASS Matrix survey]; };
 lawn = derive { name="lawn"; version="0.1.0"; sha256="0vv2qmz6a692ammh3jxnpq3b669s8cx61krmb97jlwjy2nb6r81i"; depends=[jsonlite magrittr V8]; };
-lawstat = derive { name="lawstat"; version="2.5"; sha256="01y00jfapmh3bmrmz740flkahw0b8im8sp5ac8hsp4pf9k09cvws"; depends=[Hmisc Kendall mvtnorm VGAM]; };
+lawstat = derive { name="lawstat"; version="3.0"; sha256="0398bf4jv0gnq54v6m7zl5sixspnvfwc3x3z492i38l215pc38kx"; depends=[Hmisc Kendall mvtnorm VGAM]; };
 lazy = derive { name="lazy"; version="1.2-15"; sha256="1pdqgvn0qpfg5hcg5159ccf5qj2nd1ibai9p85rwjpddfynk6jks"; depends=[]; };
 lazyData = derive { name="lazyData"; version="1.0.3"; sha256="1i4jry54id8hhfla77pwk3rj2cci6na36hxj7k35k8lx666fdam2"; depends=[]; };
-lazyWeave = derive { name="lazyWeave"; version="2.2.5"; sha256="18j31lbbplxvrz4wnq7hfw9qcx1s0y4c34lbxwly2wyrvzjhxybl"; depends=[Hmisc survival]; };
 lazyeval = derive { name="lazyeval"; version="0.1.10"; sha256="02qfpn2fmy78vx4jxr7g7rhqzcm1kcivfwai7lbh0vvpawia0qwh"; depends=[]; };
-lba = derive { name="lba"; version="1.0"; sha256="108kfffwpvl6rjcmmxswprxxqcv1sj7w9mmca4pwaiprad7p7x59"; depends=[alabama ca MASS plotrix]; };
+lba = derive { name="lba"; version="1.2"; sha256="0zfln5dc4v3yaqgdbg22nq3z2by7jnbbi9mwwwvkr4j1z70knpqg"; depends=[alabama ca MASS plotrix]; };
 lbfgs = derive { name="lbfgs"; version="1.2.1"; sha256="0p99g4f3f63vhsw0s1m0y241is9lfqma86p26pvja1szlapz3jf5"; depends=[Rcpp]; };
 lbfgsb3 = derive { name="lbfgsb3"; version="2015-2.13"; sha256="1jpy0j52w8kc8qnwcavjp3smvdwm1qgmswa9jyljpf72ln237vqw"; depends=[numDeriv]; };
 lbiassurv = derive { name="lbiassurv"; version="1.1"; sha256="1i6l3y4rasqpqka7j39qjx22wjbilgc9pkp05an52aysfvfxy193"; depends=[actuar]; };
 lcd = derive { name="lcd"; version="0.7-3"; sha256="1jnnw15d4s8yb5z5jnzvmlrxv5x6n3h7wcdiz2nw4vfiqncnpwx4"; depends=[ggm igraph MASS]; };
 lcda = derive { name="lcda"; version="0.3"; sha256="1ximsyn6qw2gfn7b1hdpbjs6h6nk7hrignlii0np1lbf0k8l4xxl"; depends=[poLCA]; };
 lcmm = derive { name="lcmm"; version="1.7.2"; sha256="1sg5vx3nx8ik5z2c2pi3p9h5b5k0z7m1jc404jkv3gr17nilcp4i"; depends=[survival]; };
-lctools = derive { name="lctools"; version="0.2-2"; sha256="0yf30gjqp7adjw0l129xzmaj2wmc6hbqhdw35dfwwcxk5nys5dq0"; depends=[reshape weights]; };
+lctools = derive { name="lctools"; version="0.2-3"; sha256="167905fimgslx9rkvwqfr905cm5w88pzii847g9j0bwfgkm2m4rp"; depends=[reshape weights]; };
 lda = derive { name="lda"; version="1.3.2"; sha256="1iizsksp8wz34ji7p2kc6npxz9rzhs6217793nfri6y6mq23vs8z"; depends=[]; };
 ldbounds = derive { name="ldbounds"; version="1.1-1"; sha256="15ixrq615x64zmi6dryq3ww0dqxd0qf5xx1bs3w934sf99l46bhs"; depends=[lattice]; };
 ldlasso = derive { name="ldlasso"; version="3.2"; sha256="0ij68zvgm8dfd2qwx6h6ygndac29qa0ddpf11z959v06n8jsnk11"; depends=[GenABEL quadprog]; };
 ldr = derive { name="ldr"; version="1.3.3"; sha256="1c48qm388zlya186qmsbxxdcg1mdv3nc3i96lqb40yhcx2yshbip"; depends=[GrassmannOptim Matrix]; };
 leaderCluster = derive { name="leaderCluster"; version="1.2"; sha256="1lqhckarqffm2l3ynji53a4hrfn0x7zab7znddia76r2h6nr02zb"; depends=[]; };
+leaflet = derive { name="leaflet"; version="1.0.0"; sha256="1s49nk1wzcdim3cqv4lq4kpvny1hvcnm1sbman9f5h8zgbi7f93n"; depends=[base64enc htmltools htmlwidgets magrittr markdown png raster RColorBrewer scales sp]; };
 leafletR = derive { name="leafletR"; version="0.3-3"; sha256="00xdmlv6wc47lzlm43d2klyzcqljsgrfrmd5cv8brkvvcsyj57kq"; depends=[brew jsonlite]; };
 leapp = derive { name="leapp"; version="1.2"; sha256="1yiqzmhgl5f3zwpcc5sz3yqrvp8p6r4w2ffdfyirirayqc96ar17"; depends=[corpcor MASS sva]; };
 leaps = derive { name="leaps"; version="2.9"; sha256="1ax9v983401hvb6cdswkc1k7j62j8yk6ds22qdj24vdidhdz5979"; depends=[]; };
 learningr = derive { name="learningr"; version="0.29"; sha256="1nr4ydcq2mskv4c0pmf0kxv5wm8pvjqmv19xz5yaq0j834b0n5q7"; depends=[plyr]; };
-learnstats = derive { name="learnstats"; version="0.1.0"; sha256="03rlyh7ynxxvnkx8r8611ss36aqc8mdk6w2kjajmmsdwzp81lgnc"; depends=[ggplot2 Rcmdr RcmdrPlugin_epack rmarkdown shiny]; };
+learnstats = derive { name="learnstats"; version="0.1.1"; sha256="1sa064cr7ykl4s1ssdfmb3v1sjrnkbwdh04hmwwd9b3x0llsi9vv"; depends=[ggplot2 Rcmdr shiny]; };
 lefse = derive { name="lefse"; version="0.1"; sha256="1zdmjxr5xa5p3miw79mhsswsh289hgzfmn3mpj1lyzal1qgw1h5m"; depends=[ape fBasics geiger picante SDMTools vegan]; };
 leiv = derive { name="leiv"; version="2.0-7"; sha256="15ay50886xx9k298npyksfpva8pck7fhqa40h9n3d7fzvqm5h1jp"; depends=[]; };
 lessR = derive { name="lessR"; version="3.3.1"; sha256="1nwvkxi9q7fsjgrfpa16ry54cyk2ja5cy4cq0xzqya6wn04mbicg"; depends=[car foreign gdata leaps MBESS triangle]; };
@@ -4320,14 +4328,14 @@ lestat = derive { name="lestat"; version="1.8"; sha256="12w3s5yr9lsnjkr3nsay5sm4
 letsR = derive { name="letsR"; version="2.1"; sha256="0jgc6k2hbpbr7kl42n01mff7pzjz60zd8mchrfhzgd797pwcqlbq"; depends=[fields geosphere maps maptools raster rgdal sp XML]; };
 lfactors = derive { name="lfactors"; version="0.4.0"; sha256="1f4p5mp6m11njrj421vjl5398laicgyg8m04srshfmpi74hf1nb9"; depends=[]; };
 lfe = derive { name="lfe"; version="2.3-1709"; sha256="0q6va05n38225a7sbk0ykdrygzjk6js6afm2vyy5fac1hbvihb05"; depends=[Formula Matrix xtable]; };
-lfl = derive { name="lfl"; version="1.1"; sha256="1hrdhp2r17qwns5hya9sl03q93h934whqyqsn8mdrsavc64i649v"; depends=[e1071 foreach forecast plyr Rcpp tseries zoo]; };
+lfl = derive { name="lfl"; version="1.2"; sha256="0l922sjpdiy4ifhizl1l2azzwg83j8fy8j5bvwx6yd3fvxas51ns"; depends=[e1071 foreach forecast plyr Rcpp tseries zoo]; };
 lfstat = derive { name="lfstat"; version="0.6.1"; sha256="0i3zrinvjxlg9w5zqrv8wzy15vxvi2gw3jrlfs4rddkxnp98ya9d"; depends=[lattice latticeExtra lmom lmomRFA]; };
 lga = derive { name="lga"; version="1.1-1"; sha256="1nkvar9lmdvsc3c21xmrnpn0haqk03jwvc9zfxvk5nwi4m9457lg"; depends=[boot lattice]; };
 lgarch = derive { name="lgarch"; version="0.5"; sha256="01y5p3w4i1yfxb647pkdazqn9yac1p6jp7rk92ddxnvvjb6fdp59"; depends=[zoo]; };
 lgcp = derive { name="lgcp"; version="1.3-9"; sha256="093rxvb4irmf04nx1j5zrgh8k0jw78zl9qrmkn314vaqyn3b4608"; depends=[fields iterators maptools Matrix ncdf RandomFields raster rgeos rpanel sp spatstat]; };
 lgtdl = derive { name="lgtdl"; version="1.1.3"; sha256="00lffc60aq1qjyy66nygaypdky9rypy607mr8brwimjn8k1f0gx4"; depends=[]; };
 lhs = derive { name="lhs"; version="0.10"; sha256="1hc23g04b6nsg8xffkscwsq2mr725r6s296iqll887b3mnm3xaqz"; depends=[]; };
-libamtrack = derive { name="libamtrack"; version="0.6.1"; sha256="0kg3lp1f40hymr2nxq7immxnqryavad91xp6l6x4qyp0cb02870a"; depends=[]; };
+libamtrack = derive { name="libamtrack"; version="0.6.2"; sha256="1wmy3baqbmmzc4w1b3w2z3qvsi61khl6a6rlc22i58gnprmgzrph"; depends=[]; };
 lifecontingencies = derive { name="lifecontingencies"; version="1.1.6"; sha256="07gvq93p2f8s4a43h596xmzifnx1jwnfyg5giqhlfvxnq6wdbvrr"; depends=[markovchain Rcpp]; };
 likeLTD = derive { name="likeLTD"; version="5.5.0"; sha256="111wdszkk2bdi9sz6gfih32kib0ig9bp4xlq6wl5r5zx3nrlj5zb"; depends=[DEoptim gdata ggplot2 gtools rtf]; };
 likelihood = derive { name="likelihood"; version="1.7"; sha256="0q8lvwzlniijyzsznb3ys4mv1cqy7ibj9nc3wgyb4rf8676k4f8v"; depends=[nlme]; };
@@ -4338,7 +4346,7 @@ limitplot = derive { name="limitplot"; version="1.2"; sha256="0wj1xalm80fa5pvjwh
 linLIR = derive { name="linLIR"; version="1.1"; sha256="1v5bwki5j567x2kndfd5nli5i093a33in31025h9hsvkbal1dxgp"; depends=[]; };
 linbin = derive { name="linbin"; version="0.1.0"; sha256="0812m19kfscb0d23rv0llziapd269r7zlm2yq8h3yp8c8jl8gdb1"; depends=[]; };
 lineup = derive { name="lineup"; version="0.34-1"; sha256="0p6gxbv8xdrhgk8zdlnqrybald9vqz717czb49b123h84rjr2f19"; depends=[class qtl]; };
-linkR = derive { name="linkR"; version="1.0.0"; sha256="1l936i74h1s42w1d7nn220rjygc6n0jkjidvix1df2wlacnswzpg"; depends=[svgViewR]; };
+linkR = derive { name="linkR"; version="1.0.1"; sha256="0ayscl0i4flh31l5j8730h5lpqi30p8f2l3nvbd3i2mhp54gpcdx"; depends=[svgViewR]; };
 linkcomm = derive { name="linkcomm"; version="1.0-11"; sha256="1w5sfmzvrk30fr161pk0cy5nj8kasqm6hqgyafq6r280b5s272cb"; depends=[dynamicTreeCut igraph RColorBrewer]; };
 linkim = derive { name="linkim"; version="0.1"; sha256="0yvyid9x59ias8h436a202hd2kmqvn8k1zcrgja2l4z2pzcvfn91"; depends=[]; };
 linprog = derive { name="linprog"; version="0.9-2"; sha256="1ki14an0pmhs2mnmfjjvdzd76pshiyvi659zf7hqvqwj0viv4dw9"; depends=[lpSolve]; };
@@ -4355,7 +4363,7 @@ lllcrc = derive { name="lllcrc"; version="1.2"; sha256="06n1fcd3g3z5rl2cyx8jhysc
 lm_beta = derive { name="lm.beta"; version="1.5-1"; sha256="0p224y9pm72brbcq8y1agkcwc82j7clsnszqzl1qsc0gw0bx9id3"; depends=[]; };
 lm_br = derive { name="lm.br"; version="2.6"; sha256="1f7cxd6ksspgpz2lnppyb466lgis5isk0bj8z4bjiwk4abg4lg3i"; depends=[Rcpp]; };
 lmSupport = derive { name="lmSupport"; version="2.9.2"; sha256="0mdl5ih7zzxynawxx4prh08nq451x74bfw4ga7cygl2ahi6vqq50"; depends=[AICcmodavg car gvlma lme4 pbkrtest psych]; };
-lme4 = derive { name="lme4"; version="1.1-7"; sha256="0v9vl9rspakyw2dmcl5lbhv1nlg10yhgdvi3gpfnizln7xw9ksyp"; depends=[lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; };
+lme4 = derive { name="lme4"; version="1.1-8"; sha256="0ag9rhdb7q3rsmd8qc7iq88cc0lbmkng2q0pfvdp9cg6lczi0zr0"; depends=[lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; };
 lmeNB = derive { name="lmeNB"; version="1.3"; sha256="03khn9wgjbz34sx0p5b9wd3mhbknw8qyvyd5pvllmjipnir63d3q"; depends=[lmeNBBayes numDeriv statmod]; };
 lmeNBBayes = derive { name="lmeNBBayes"; version="1.3.1"; sha256="13shfsh9x6151xy8gicb25sind90imrwclnmfj96b76p5dvhzabm"; depends=[]; };
 lmeSplines = derive { name="lmeSplines"; version="1.1-10"; sha256="0fy6hspk7rqqkzv0czvvs8r4ishvs7zsf4ykvia65nj26w7yhyia"; depends=[nlme]; };
@@ -4366,7 +4374,6 @@ lmerTest = derive { name="lmerTest"; version="2.0-25"; sha256="13psyrll5srxahyk4
 lmf = derive { name="lmf"; version="1.2"; sha256="1xqlqmjl7wf5b2s2a1k1ara21v74b3wvwl4mhbj9dkdb0jcrgfva"; depends=[]; };
 lmfor = derive { name="lmfor"; version="1.1"; sha256="0bbcgpcx0xjla128w80xlxp6i6hnrk4wjwqih66zvyjaf5sz7wx9"; depends=[MASS nlme]; };
 lmm = derive { name="lmm"; version="1.0"; sha256="0x5ikb1db99dsn476mf4253dlznlxa1cwnykg1nwnm2vy5qym2fq"; depends=[]; };
-lmmfit = derive { name="lmmfit"; version="1.0"; sha256="06mzmx7md7qw5mfhgdljc7i40sx9yrx7j57xbbp3fhl2zs1dpb4g"; depends=[MASS nlme]; };
 lmmlasso = derive { name="lmmlasso"; version="0.1-2"; sha256="1mvd38k9npyc05a2x7z0908qz9x4srqgzq9yjyyggplqfrl4dgsz"; depends=[emulator miscTools penalized]; };
 lmmot = derive { name="lmmot"; version="0.1.2"; sha256="1c7cn1g1fl8nwjzm78a8qgw9da170f1q0z5vxl446f167ix5ppkp"; depends=[MASS maxLik]; };
 lmms = derive { name="lmms"; version="1.2"; sha256="12wli7iwnihq42pa1jy1ml4y3l93grwrv9n7vpgp5wp1hj4d1s8c"; depends=[gdata ggplot2 gplots lmeSplines nlme reshape]; };
@@ -4388,24 +4395,26 @@ log4r = derive { name="log4r"; version="0.2"; sha256="07q8m7z2sxm6n25a62invf76qa
 logbin = derive { name="logbin"; version="1.2"; sha256="1jfkg5rx51hm2skwwafqiw6ajdijdm0cniral3j5flidinsbsbcm"; depends=[glm2]; };
 logconPH = derive { name="logconPH"; version="1.5"; sha256="05fkibgh5nzs8c4f39kzg4zyh2dfhg1k69hlx7l8p442snajsg92"; depends=[]; };
 logconcens = derive { name="logconcens"; version="0.16-4"; sha256="11bk03kjlb747g54axmb0nayz226g41xvanbw79aij76vjbglv7y"; depends=[]; };
-logcondens = derive { name="logcondens"; version="2.1.3"; sha256="0fg7dsila67k80kbh1m1l69pb0pwwr893lkian7a8abx3a1qclij"; depends=[ks]; };
+logcondens = derive { name="logcondens"; version="2.1.4"; sha256="0y1x0bvalrhrl329l9a0mssc8kc060ml2hgz18qyw3chd24x3dmz"; depends=[ks]; };
 logcondens_mode = derive { name="logcondens.mode"; version="1.0.1"; sha256="1i2c2prk5j863p3a3q3xnsv684igfi5czz3dib7zfjldpf0qyaq7"; depends=[distr logcondens]; };
-logcondiscr = derive { name="logcondiscr"; version="1.0.5"; sha256="170rg4rqch0mlhmc1zc59h271b57y3xfxrc3gh9pwvc9r11gw7k5"; depends=[cobs Matrix mvtnorm]; };
+logcondiscr = derive { name="logcondiscr"; version="1.0.6"; sha256="08wwxsrpflwbzgs6vb3r0f52hscxz1f4q0xabr1yqns06gir1kxd"; depends=[cobs Matrix mvtnorm]; };
 logging = derive { name="logging"; version="0.7-103"; sha256="1sp7q217awizb6l8c9p5dix6skpq8j7w8i088x4mm0fc0qr1ba5c"; depends=[]; };
 logistf = derive { name="logistf"; version="1.21"; sha256="0cwbmd0mvj4wywpx7p4lhs70nhab7bfl6fzz2c4snn3ma6sy7x8c"; depends=[mgcv mice]; };
 logitchoice = derive { name="logitchoice"; version="0.9.4"; sha256="1vkw7cwp7nwrsj9ifn4gz21zbw9da5rph9lr3w466zxkzdkbldqj"; depends=[]; };
 logitnorm = derive { name="logitnorm"; version="0.8.29"; sha256="0wbdxh3n44nzb6c0ahyd8gndfql1y56fns2bkmzqi3nxy9blhx18"; depends=[]; };
 loglognorm = derive { name="loglognorm"; version="1.0.1"; sha256="0rhx769a5nmidpbpngs2vglsbkpgw9badz3kj3jfmpj873jfnbln"; depends=[]; };
 logmult = derive { name="logmult"; version="0.6.2"; sha256="0i6sabg56x52aw5n7i61ick4n0hsbs28iagyzp0nvd2qrvz8p9ma"; depends=[gnm qvcalc]; };
-logspline = derive { name="logspline"; version="2.1.5"; sha256="18hpzcg71v3zjzp92whgxgn7w87cadgxr65pp7nv6m5pvj130i3p"; depends=[]; };
+logspline = derive { name="logspline"; version="2.1.8"; sha256="1y0vdrvk8bmqm4rpfr90cdw0y4sk8xgr73g1nwbcjffz10m7qmz4"; depends=[]; };
 lokern = derive { name="lokern"; version="1.1-6"; sha256="0iixxs23zsb0qadppcwmwf6vbxcjnm8zmwyz1xkkmhrpp06sa3jw"; depends=[sfsmisc]; };
 lomb = derive { name="lomb"; version="1.0"; sha256="06lbk7s1ilqx6xsgj628wzdwmnvbs0p03hdpx8665fhddcxh3ryy"; depends=[]; };
 longCatEDA = derive { name="longCatEDA"; version="0.17"; sha256="1yb0117ycj4079590mrx3lg9m5k7xd1dhb779r3rmnww94pmvja9"; depends=[]; };
 longclust = derive { name="longclust"; version="1.2"; sha256="1m270fyvfz0w19p9xdv7ihy19nhrhjq2akymbp774073crznmmw0"; depends=[]; };
-longitudinal = derive { name="longitudinal"; version="1.1.11"; sha256="0rzi177v9k6gy1wv06vf81r1q0ml81ssf83v0z8rpmx5j91d71ac"; depends=[corpcor]; };
+longitudinal = derive { name="longitudinal"; version="1.1.12"; sha256="1d83ws28nxi3kw5lgd5n5y7865djq7ky72fw3ddi1fkkhg1r9y6l"; depends=[corpcor]; };
 longitudinalData = derive { name="longitudinalData"; version="2.3"; sha256="0ld2saga04if2zp3ylz720q8451f7a7aiva5hpj471wxd0948592"; depends=[class clv misc3d rgl]; };
 longmemo = derive { name="longmemo"; version="1.0-0"; sha256="1jnck5nfwxywj74awl4s9i9jn431655mmi85g0nfbg4y71aprzdc"; depends=[]; };
 longpower = derive { name="longpower"; version="1.0-11"; sha256="1l1icy653d67wlvigcya8glhqh2746cr1vh1khx36qjhfjz6wgyf"; depends=[lme4 Matrix nlme]; };
+longurl = derive { name="longurl"; version="0.1.0"; sha256="1iz25m583gmzl8rkrrikydm3a8g67whzxp9lwysrjpnpqsly82vz"; depends=[dplyr httr pbapply]; };
+loo = derive { name="loo"; version="0.1.0"; sha256="1j471ihvqkc4f7l2aaw9k50qg80617njg72wiavbqmw8skp1gs2a"; depends=[matrixStats]; };
 loop = derive { name="loop"; version="1.1"; sha256="1gr257fm92rfh1sdhsb4hy0fzwjkwvwm3v85302gzn02f86qr5dm"; depends=[MASS]; };
 loopr = derive { name="loopr"; version="1.0.1"; sha256="1qzfjv15ymk8mnvb556g2bfk64jpl0qcvh4bm3wihplr1whrwq6y"; depends=[dplyr lazyeval magrittr plyr R6]; };
 lordif = derive { name="lordif"; version="0.2-2"; sha256="0898k5w9wky318k8x0zknjqdzdify0yyrnb1506j341l4n1bm04s"; depends=[Hmisc ltm MASS msm mvtnorm polycor rms sfsmisc]; };
@@ -4437,7 +4446,7 @@ ltsbase = derive { name="ltsbase"; version="1.0.1"; sha256="16p5ln9ak3h7h0icv5jf
 ltsk = derive { name="ltsk"; version="1.0.3"; sha256="17l4mwggd4s39l6x1b6gvwgd6gjl0h37wfis1i6l9k6hiaqhb6vr"; depends=[fields]; };
 lubridate = derive { name="lubridate"; version="1.3.3"; sha256="1f07z3f90vbghsarwjzn2nj6qz8qyfkqalszx8cb5kliijdkwy8z"; depends=[memoise plyr stringr]; };
 luca = derive { name="luca"; version="1.0-5"; sha256="1jiqwibkrgga4ahz0qgpfkvrsxjqc55i2nwnm60xddb8hpb6a6qx"; depends=[genetics survival]; };
-lucid = derive { name="lucid"; version="1.2"; sha256="1rvc5d7sb0bcncw79g13i1rxjicngbpln9hq0qfdi7yx9hhrdpnz"; depends=[nlme]; };
+lucid = derive { name="lucid"; version="1.3"; sha256="018vp4xibxr7aanffcvhmppsh7vjsjrqqc41iavyasjbamj3hyck"; depends=[nlme]; };
 lunar = derive { name="lunar"; version="0.1-04"; sha256="0nkzy6sf40hxkvsnkzmqxk4sfb3nk7ay4rjdnwf2zym30qax74kk"; depends=[]; };
 lvm4net = derive { name="lvm4net"; version="0.2"; sha256="0al0answp3rngq69bl3ch6ylil22wdp1c047yi5gbga853p7db0c"; depends=[ellipse ergm igraph MASS network]; };
 lxb = derive { name="lxb"; version="1.3"; sha256="0mvjk0s9bzvznjy0cxjsqv28f6jjzvr713b2346ym4cm0y4l3mir"; depends=[]; };
@@ -4450,7 +4459,7 @@ mQTL = derive { name="mQTL"; version="1.0"; sha256="0k80xvkr0b0mp3bj2s558fjxi2zf
 mRMRe = derive { name="mRMRe"; version="2.0.5"; sha256="1lhpamjy8dbk3lzjj0wj041cg99rw6925i9fq297c93jxq562414"; depends=[igraph survival]; };
 mRm = derive { name="mRm"; version="1.1.5"; sha256="0sbpk7z4ij917nw8wyvnm87iav95ybqrzvmsjy3r8nyq55bjzyn7"; depends=[]; };
 maRketSim = derive { name="maRketSim"; version="0.9.2"; sha256="1cq17zjwyf4i5lcqgxqkw805s4mr6qp89blgpmpxy8gdrbfj93m4"; depends=[]; };
-maSAE = derive { name="maSAE"; version="0.1-2"; sha256="18a1zbfmjhrmi3fgqd7vaicpsca59kp8r1003pwl7l4032p32fxk"; depends=[]; };
+maSAE = derive { name="maSAE"; version="0.1-3"; sha256="1im837kdmpgk1073iqgqz194b1i005i88w7wl50hdgw07hizlk18"; depends=[]; };
 maboost = derive { name="maboost"; version="1.0-0"; sha256="18d36cgvn8p75nidfr6al458jbzwc1i7x77y1ks50y9phrz3wf65"; depends=[C50 rpart]; };
 mada = derive { name="mada"; version="0.5.7"; sha256="0a2m1rb4d143v9732392xzvbg6x1k3l0g3zscgbx64m21kxshmgb"; depends=[ellipse mvmeta mvtnorm]; };
 mads = derive { name="mads"; version="0.1.2"; sha256="1hbanfa1wnfvfs0g8dcf5z4439v0pp3rqhxahiis03jlfxzgd841"; depends=[mrds]; };
@@ -4463,13 +4472,13 @@ mailR = derive { name="mailR"; version="0.4.1"; sha256="1bfh3fxdqx9f9y3fgklxyslp
 makeProject = derive { name="makeProject"; version="1.0"; sha256="09q8xa5j4s5spgzzr3y06l3xis93lqxlx0q66s2nczrhd8nrz3ca"; depends=[]; };
 mallet = derive { name="mallet"; version="1.0"; sha256="06rksf5nvxp4sizgya7h4sb6fgw3yz212a01dqmc9p5a5wqi76x0"; depends=[rJava]; };
 managelocalrepo = derive { name="managelocalrepo"; version="0.1.5"; sha256="180b7ikas1kb7phm4l2z1d8wi45wi0qyz2c8rl8ml3f71b4mlzgc"; depends=[assertthat stringr]; };
-manifestoR = derive { name="manifestoR"; version="1.0-1"; sha256="1008bz2vsmhx0sx6kc55z8dhlfinbadagz4hd0p50c4q86ibl7lh"; depends=[dplyr functional httr jsonlite NLP psych tm zoo]; };
+manifestoR = derive { name="manifestoR"; version="1.0-3"; sha256="0p048ly4rkz08952s6d9cxwvxghba0g5xwx4v04kvjw3p8v9b7cq"; depends=[dplyr functional httr jsonlite NLP psych tm zoo]; };
 manipulate = derive { name="manipulate"; version="1.0.1"; sha256="1klknqdfppi5lf6zbda3r2aqzsghabcsaxmvd3vw3cy3aa984zky"; depends=[]; };
 mapDK = derive { name="mapDK"; version="0.3.0"; sha256="03ksg47caxx3y97p3nsflwpc7i788jw874cixr9gjz756avwkmwp"; depends=[ggplot2 stringi]; };
 mapStats = derive { name="mapStats"; version="2.4"; sha256="18pp1sb9p4p300ffvmzjrg5bv1i7f78mhpggq83myc26c3a593na"; depends=[classInt colorspace Hmisc lattice maptools RColorBrewer reshape2 sp survey]; };
 mapdata = derive { name="mapdata"; version="2.2-3"; sha256="1fhj34cgq6rniy0339qv2ghbs0aiq38h9jfwx7szb83yj37v7wm6"; depends=[maps]; };
 mapfit = derive { name="mapfit"; version="0.9.7"; sha256="16a318bz3my27qj0xzf40g0q4bh9alg2bm6c8jbwgswf1paq1xmx"; depends=[Matrix]; };
-mapmisc = derive { name="mapmisc"; version="1.2.4"; sha256="07h237sgsycagn61rharb09q9s8da777hzngh4py1sbv6gfyqpv8"; depends=[raster sp]; };
+mapmisc = derive { name="mapmisc"; version="1.3.1"; sha256="0ijxy42k5j85mz2pm0g8fs0fliy0pjkfd2jmisfxgrn1h4sz2d3p"; depends=[raster sp]; };
 mapplots = derive { name="mapplots"; version="1.5"; sha256="09sk78a0p8hlwhk3w2dwvpb0a6p7fqdxyskvz32p1lcav7y3jfrb"; depends=[]; };
 mapproj = derive { name="mapproj"; version="1.2-2"; sha256="1fdb72hvcp6jm7rhvs8zdkya6ifs92lfqnmq5vj5amwckkxfidc6"; depends=[maps]; };
 maps = derive { name="maps"; version="2.3-9"; sha256="1gzy81sl4vpr4hsnh4jsp5rd26jdkzsw99qxwfmbadjyf55q06wv"; depends=[]; };
@@ -4481,24 +4490,25 @@ marelac = derive { name="marelac"; version="2.1.4"; sha256="0mm1rmaxrbhk6r9z62ns
 marg = derive { name="marg"; version="1.2-2"; sha256="0j08zzcrj8nqsargi6xi50gy9pl4smmsp4b7ywlga7r1ga38g82r"; depends=[statmod survival]; };
 markdown = derive { name="markdown"; version="0.7.7"; sha256="00j1hlib3il50azs2vlcyhi0bjpx1r50mxr9w9dl5g1bwjjc71hb"; depends=[mime]; };
 marked = derive { name="marked"; version="1.1.8"; sha256="1xsg0iy8mcy9b98bxmjr3y413xwblbhks3fcydbvjnry0k03gd5i"; depends=[coda expm ggplot2 lme4 Matrix numDeriv optimx plyr R2admb Rcpp truncnorm]; };
-markovchain = derive { name="markovchain"; version="0.3"; sha256="176cdp99a1d2n8awzpx1mhlvqqp8wc7x37ha03pdsd8hmsb05m5g"; depends=[expm igraph matlab Matrix Rcpp RcppArmadillo RcppParallel]; };
+markophylo = derive { name="markophylo"; version="1.0.1"; sha256="17lzmjb34ky0y5hjijfxhxnry0b3vrmfs0q9iyd293wngmjs6r0s"; depends=[Rcpp RcppArmadillo]; };
+markovchain = derive { name="markovchain"; version="0.3.1"; sha256="067rib4sxcqq8wwf139x6k4b37caw1wslv0lbss9nzwhv50bxgvd"; depends=[expm igraph matlab Matrix MultinomialCI Rcpp RcppArmadillo RcppParallel]; };
 marl = derive { name="marl"; version="1.0"; sha256="0rndnf3rbcibv3gsrw1kfp5zhg37cw9wwlz0b7dbwprd0m71l3pm"; depends=[]; };
 marmap = derive { name="marmap"; version="0.9.2"; sha256="1csi6v6z2p3nmyqwy8bmbj036693rzmxrc317g0a45gsqxggp3n4"; depends=[adehabitatMA DBI gdistance geosphere ggplot2 ncdf plotrix raster reshape2 RSQLite shape sp]; };
 marqLevAlg = derive { name="marqLevAlg"; version="1.1"; sha256="1wmqi68g0flrlmj87vwgvyxap0miss0n42qiiw7ypyj4jw9kwm8j"; depends=[]; };
 matR = derive { name="matR"; version="0.9"; sha256="0lih3g2z6rxykprl3s529xcf466bpzpsv4l20dkgx1fgfslfcl2p"; depends=[BIOM_utils MGRASTer]; };
-matchingMarkets = derive { name="matchingMarkets"; version="0.1-4"; sha256="096yknmzla2qq2vkaxna5f8mclayjn5baff3cm8ik95zy7j3lrjp"; depends=[lpSolve partitions Rcpp RcppArmadillo RcppProgress]; };
+matchingMarkets = derive { name="matchingMarkets"; version="0.1-5"; sha256="09nybpws50mpbnbsv8796hdxy894fld89xjs4q1yx0km180yrhww"; depends=[lpSolve partitions Rcpp RcppArmadillo RcppProgress]; };
 matchingR = derive { name="matchingR"; version="1.0.1"; sha256="0qqk2zcyj0m3r9q0lclb39gdrjqqjlaxvk3cxpfah7hxhhkrk4mc"; depends=[Rcpp RcppArmadillo]; };
 mathgraph = derive { name="mathgraph"; version="0.9-11"; sha256="0xikgzn24p0qqlrmaydmjk5yz5pq2rilsvpx86n3p2k2fc3wpwjy"; depends=[]; };
 matie = derive { name="matie"; version="1.2"; sha256="1ymx49cyvz63imqw5n48grilphiqvvdirwsrv82p7jgxdyav2xv0"; depends=[cba dfoptim gplots igraph mvtnorm seriation]; };
 matlab = derive { name="matlab"; version="1.0.2"; sha256="0m21k2vzbc5d3c93p2hk4208xyd2av2slg55q5j1ibjidiryqgd2"; depends=[]; };
 matpow = derive { name="matpow"; version="0.1.1"; sha256="1a6q21ba16qfdpykmjwgmrb1kkvvyx48qg8cbgpdmch0vhibcgcp"; depends=[]; };
-matrixStats = derive { name="matrixStats"; version="0.14.0"; sha256="1glm3h6d4c6bl3svnfk6fyj59linfc7s6fyrs0nlcwizs4371nis"; depends=[]; };
+matrixStats = derive { name="matrixStats"; version="0.14.2"; sha256="1lxm6wlxav5vrzi4n8f5kky8nrbfhpvcdf15qrz83br18yl06bqj"; depends=[]; };
 matrixcalc = derive { name="matrixcalc"; version="1.0-3"; sha256="1c4w9dhi5w98qj1wwh9bbpnfk39rhiwjbanalr8bi5nmxkpcmrhp"; depends=[]; };
 matrixpls = derive { name="matrixpls"; version="0.5.0"; sha256="0r1qpfbvaq24d30ck5c5zwsss4rqhl12g3hhmij3cn55hmv26azq"; depends=[assertive lavaan MASS matrixcalc psych]; };
 maxLik = derive { name="maxLik"; version="1.2-4"; sha256="1b2qr16s2w76nxqdlq3hflpg0sjnn8mlzas7082y8xpxw3cknpdz"; depends=[miscTools sandwich]; };
 maxent = derive { name="maxent"; version="1.3.3.1"; sha256="1skc7d0p6kg0gi1bpgaqn2dmxjzbvcphx5x3idpscxfbplm5v96p"; depends=[Rcpp SparseM tm]; };
 maxlike = derive { name="maxlike"; version="0.1-5"; sha256="0h544wr7qsyb70vmbk648hfyb6arrsb41gw39svcin412rhw9k9j"; depends=[raster]; };
-maxstat = derive { name="maxstat"; version="0.7-22"; sha256="0fgpc5y3c5cidy7hxil10hxzdjxfmag2pp2ksh02z9smb8m0sdqb"; depends=[exactRankTests mvtnorm]; };
+maxstat = derive { name="maxstat"; version="0.7-23"; sha256="1dp2gp0zsf3l5vd43ixxx7039ybcw84x9zf526pk1p2j7pxwsbay"; depends=[exactRankTests mvtnorm]; };
 mbbefd = derive { name="mbbefd"; version="0.7"; sha256="0l8dq1j1ky83jl1cka0mrjcf7rcby36jkp0zn7wmpnxjrmdrixgb"; depends=[actuar gsl Rcpp]; };
 mbest = derive { name="mbest"; version="0.3"; sha256="0j6v6c1s11gvzwcnj5dnd9anj11hpmy7c83c8ribb7lx75mwj4k4"; depends=[lme4]; };
 mblm = derive { name="mblm"; version="0.12"; sha256="17h65bapvz89g5in3gkxq541bxgpj9pciz6i5hzhqn0bdbsb3k6r"; depends=[]; };
@@ -4515,7 +4525,7 @@ mcgibbsit = derive { name="mcgibbsit"; version="1.1.0"; sha256="09ydcbjz3abmh469
 mcheatmaps = derive { name="mcheatmaps"; version="1.0.0"; sha256="1gglm32xpmim38m7fziczgqfbpcq2899lxardsrzg6j1vhmf765y"; depends=[gridBase]; };
 mcll = derive { name="mcll"; version="1.2"; sha256="0i9zqbh0l9a9mv4558gbdq9mh52chanykyfwmiymmxygxhp809sz"; depends=[locfit statmod]; };
 mclogit = derive { name="mclogit"; version="0.3-1"; sha256="0zyms6v9qjh6a5ccahfanarp4sg49yingb8wpjcz61skqvm8j7qx"; depends=[Matrix]; };
-mclust = derive { name="mclust"; version="5.0.1"; sha256="10h8y4a0v1vq01v8i92yr3dcxfq74xsm44nh0ldh1a4d6j270zyp"; depends=[]; };
+mclust = derive { name="mclust"; version="5.0.2"; sha256="1ilhgiigrnvw5l85vk54xdvlirqhp5wb404i0mh2jyzccr9pjml5"; depends=[]; };
 mcmc = derive { name="mcmc"; version="0.9-3"; sha256="148l28nb1qv82x2hj46c26yhn0lw8x5jsrp2dav9sbysv1bdj2f8"; depends=[]; };
 mcmcplots = derive { name="mcmcplots"; version="0.4.2"; sha256="0ws2la6ln016l98c1rzf137jzhzx82l4c49p19yihrmrpfrhr26l"; depends=[coda colorspace denstrip sfsmisc]; };
 mcmcse = derive { name="mcmcse"; version="1.0-1"; sha256="1jn5hl6aw83qmwccyfmcsvcymx9cp4d3qnfzzqvlw22x26rx88r6"; depends=[]; };
@@ -4531,8 +4541,8 @@ mdsdt = derive { name="mdsdt"; version="1.0"; sha256="0ngf2p6lm32124qyfh18zlgf0d
 measuRing = derive { name="measuRing"; version="0.3"; sha256="16lgvk9lm0vjy50das0qq0h0z683hh94spjcdmkljmxxzwmzfl4b"; depends=[pastecs png tiff]; };
 meboot = derive { name="meboot"; version="1.4-6"; sha256="17wjvc375vnya1lhkj10nsn68k1j3zy036031qca3wxx6wqw9kzx"; depends=[dynlm nlme]; };
 medSTC = derive { name="medSTC"; version="1.0.0"; sha256="1f7w6jbxairqvghr5b7vgdllg3ian16a1fgi7vqlq0mhy2j6phan"; depends=[]; };
-mederrRank = derive { name="mederrRank"; version="0.0.7"; sha256="08jbqmb418qb7v2x6lm4wig1pfzzfx6fhb49mbfhlkbmssbqsjfq"; depends=[BB numDeriv]; };
-medflex = derive { name="medflex"; version="0.5-0"; sha256="06zp0la99ly2vpm97l3qm289inyd0bxgkjd4cv15mvc47w9c9x9x"; depends=[boot Matrix multcomp sandwich]; };
+mederrRank = derive { name="mederrRank"; version="0.0.8"; sha256="1fvvik3bhjm6c0mhi2ma915986k2nj3lr2839k5hfrr7dg3lw3f4"; depends=[BB numDeriv]; };
+medflex = derive { name="medflex"; version="0.5-1"; sha256="0ljqg7bf2zicyc1qbr5d6lvsdppilmsqv6blrdg2vf1zyz3xyfxx"; depends=[boot Matrix multcomp sandwich]; };
 mediation = derive { name="mediation"; version="4.4.4"; sha256="00w4c51v0xvc8pfpxqn73l8r2j12sv1wf5kj3yjq8g08dgzynham"; depends=[Hmisc lpSolve MASS Matrix mvtnorm sandwich]; };
 medicalrisk = derive { name="medicalrisk"; version="1.1"; sha256="1fb8zp426zcqsnb35sgywnz44lpssa1acfa2aha9bnvyazif3s90"; depends=[hash plyr reshape2]; };
 mefa = derive { name="mefa"; version="3.2-5"; sha256="037vpnwclyj6xgycznh6g6qlirlgy3sjnkjqb1046q80b5ywv2ni"; depends=[]; };
@@ -4543,11 +4553,10 @@ mem = derive { name="mem"; version="1.4"; sha256="1d3fgllh7fhlfz3rz2jm31r8vn7msz
 memgene = derive { name="memgene"; version="1.0"; sha256="00b1mi2hvzzps542mh2p96s27kjqkpcic7djklfcwnfn1m4bz0i5"; depends=[ade4 gdistance raster vegan]; };
 memisc = derive { name="memisc"; version="0.97"; sha256="069siqkw7ll9n1crsl3yjhybwz0w52576q504cylpvlxx3jm9hfs"; depends=[lattice MASS]; };
 memoise = derive { name="memoise"; version="0.2.1"; sha256="19wm4b3kq6xva43kga3xydnl7ybl5mq7b4y2fczgzzjz63jd75y4"; depends=[digest]; };
-memuse = derive { name="memuse"; version="1.1"; sha256="1i6l3d885b4v01hlkl50m401bwi7akydhh52gf4kya5khanb8n2b"; depends=[]; };
-merror = derive { name="merror"; version="2.0.1"; sha256="09v62f7ycywasid3b7x52dhidplwdbx9fd0855b40jklfy469bkn"; depends=[]; };
+memuse = derive { name="memuse"; version="2.5"; sha256="1a34803k41644yw1h3msywslsfjvnxi5c9yjw0b73znzy76wh6wv"; depends=[]; };
 metRology = derive { name="metRology"; version="0.9-17"; sha256="1g4gv3mpii71i6imfwqg9d5iwfx03bq4lizzhx7dy39b2mj7jd4q"; depends=[MASS numDeriv]; };
-meta = derive { name="meta"; version="4.2-0"; sha256="1cbrgy3ry70l52da02vx2qflxhnqw7kmy6r10d9wzhmc1gf85snp"; depends=[]; };
-metaLik = derive { name="metaLik"; version="0.41.0"; sha256="08wiriq6cm02d0b0q34056y5249daidpjzkwzgjq6dh55v5fp2s4"; depends=[]; };
+meta = derive { name="meta"; version="4.3-0"; sha256="1dxgixvnpzhvivqgzk85x6541ayfhl2wcil4sp95q5ca9hi4wz0z"; depends=[]; };
+metaLik = derive { name="metaLik"; version="0.42.0"; sha256="1rk5mwgmgnqq2hrzbh936hzw3aa815l12r1a1qywap5ggmmyhszl"; depends=[]; };
 metaMA = derive { name="metaMA"; version="3.1.2"; sha256="1mjyz06q1kc8lhfixpym4ndpnisi1r849fj3da6riwfd6ab1v181"; depends=[limma SMVar]; };
 metaMix = derive { name="metaMix"; version="0.2"; sha256="0xlsdgincxwjzyr4i8qfmfw2wvgf41qbmyhf2rxcbarf7rmwhmqf"; depends=[data_table ggplot2 gtools Matrix Rmpi]; };
 metaRNASeq = derive { name="metaRNASeq"; version="1.0.2"; sha256="1xz7df7ypq4326yg429pgxd6aldp14c3h3qi20j5nqr5xgsdgzqa"; depends=[]; };
@@ -4561,9 +4570,10 @@ metagear = derive { name="metagear"; version="0.1"; sha256="1c00y7p7063f3c1ar17r
 metagen = derive { name="metagen"; version="1.0"; sha256="0jvbm22976aqvmfnjzs51n2w099yj5hpx6hd0pgvbia80jk7b9vk"; depends=[BatchExperiments BatchJobs BBmisc ggplot2 lhs MASS metafor ParamHelpers plyr]; };
 metamisc = derive { name="metamisc"; version="0.1.1"; sha256="1cvlsix3b857xdw6anqhqsrfwxpnf4rbzg4ybf6aw7vcdc05zgwd"; depends=[bbmle coda ellipse mvtnorm rjags]; };
 metap = derive { name="metap"; version="0.6"; sha256="1iy5cmwrlsr70z0qnqn30n15knsfclg383815a2a8yqpg5gs4953"; depends=[]; };
-metaplus = derive { name="metaplus"; version="0.7-2"; sha256="1d9528z78vmkmv67s29g87kfdwydfwx4cnbcdmd0kq8rch9zjk07"; depends=[bbmle boot lme4 MASS metafor numDeriv]; };
+metaplus = derive { name="metaplus"; version="0.7-4"; sha256="0pqlx7s3gvi2zjgv8cfxdk1n1p4gm8788w5r3smfmxykbk1hfwa8"; depends=[bbmle boot lme4 MASS metafor numDeriv]; };
 metasens = derive { name="metasens"; version="0.2-0"; sha256="13mncikxzg8cnpbw78ird1xkrjlivmjibhrk700vdx1hygzwi6x0"; depends=[meta]; };
 metatest = derive { name="metatest"; version="1.0-4"; sha256="0bz6gg2n4ffkr144jxk27y24xpqhp8awr09wkaijmv8902qx6qah"; depends=[]; };
+meteo = derive { name="meteo"; version="0.1-4"; sha256="17zspzxfj0jz19lqcxd04dh3sdi32k93dxlc4w5jgfdgy9wfq1c6"; depends=[gstat plyr raster rgdal snowfall sp spacetime]; };
 meteoForecast = derive { name="meteoForecast"; version="0.45"; sha256="0p74w5zcibzw2vpbyl4jb2wzpz0pki1n1l66hjs6dnkrn52zph95"; depends=[ncdf raster sp zoo]; };
 meteogRam = derive { name="meteogRam"; version="1.0"; sha256="167gyxjnl4dyfqs3znv8sdpkvpqdxzdqi1g730s30gycrm9snap9"; depends=[ggplot2 RadioSonde]; };
 metricsgraphics = derive { name="metricsgraphics"; version="0.8.5"; sha256="05rjx19qzf2r2hxf8y490xd29n3qy40rp38s2ni989m1p0bzc6c9"; depends=[htmltools htmlwidgets magrittr]; };
@@ -4592,7 +4602,7 @@ micromap = derive { name="micromap"; version="1.9.2"; sha256="1x4v0ibbpfz471dp46
 micromapST = derive { name="micromapST"; version="1.0.5"; sha256="1n9mzyl5dj21165j0j99brkqq7c54j3cg6r21ifdzffj2dx29wh0"; depends=[RColorBrewer]; };
 micropan = derive { name="micropan"; version="1.0"; sha256="0qnxm6z2pk1wibchj6rhn3hld77dzl5qgvzl4v9n16ywlgdv09ai"; depends=[igraph]; };
 midasr = derive { name="midasr"; version="0.4"; sha256="190qliv7v80rr3jh9yvchwl3ch7nf5b8p90iywp8qkaav5r8rcdy"; depends=[forecast MASS Matrix numDeriv optimx sandwich]; };
-migest = derive { name="migest"; version="1.6"; sha256="1mjjcba74nk10kdbsaphih3zdyaqmf02hrv13s34klwdwkp3nv0m"; depends=[]; };
+migest = derive { name="migest"; version="1.7"; sha256="13yzdkikxy0mq60zjbc4wq69ja7dps10bwxzsp8v3awr1r75zpaz"; depends=[]; };
 migration_indices = derive { name="migration.indices"; version="0.3.0"; sha256="0h0yjcj70wzpgrv3wl1f2h2wangh1klsllq0i0935plgzw736mwd"; depends=[calibrate]; };
 migui = derive { name="migui"; version="1.1"; sha256="1qchjsc7ff2b6s9w6ncj9knjv6pyp90jd4jxljn2rr1ix1gc45za"; depends=[arm gWidgets2 mi]; };
 mime = derive { name="mime"; version="0.3"; sha256="1i9f9z88cahvb5whdgmp0ipk0b9glk0xn8ik519vzpydnn1slvxk"; depends=[]; };
@@ -4614,13 +4624,14 @@ miscF = derive { name="miscF"; version="0.1-2"; sha256="195rb9acdirfhap0z35yvcci
 miscFuncs = derive { name="miscFuncs"; version="1.2-7"; sha256="1cnhd23fi6akr3fsr2b85s5cn36ksy4h3c4iyyjqcpc49wa819d0"; depends=[mvtnorm roxygen2]; };
 miscTools = derive { name="miscTools"; version="0.6-16"; sha256="19mslb64lm8srrmml1v40rfkxhqw02bplw0yjv7qnkqj44hcqfw1"; depends=[]; };
 miscset = derive { name="miscset"; version="0.4"; sha256="04cl8a2chcynfn5rljqw2ll4ry0wqaslqgjh9ny8ax3hcvyvmmwl"; depends=[data_table gridExtra Rcpp xtable]; };
+missDeaths = derive { name="missDeaths"; version="1.0"; sha256="15r25rdp8idpj9b5g8cwg729r48cwgmbgj78kgcf0laky9ld2n6r"; depends=[mitools Rcpp relsurv rms survival]; };
 missForest = derive { name="missForest"; version="1.4"; sha256="0y02dhrbcx10hfkakg5ysr3kpyrsh2d9i5b0qzhj9x5x0d5q11gp"; depends=[foreach itertools randomForest]; };
-missMDA = derive { name="missMDA"; version="1.7.3"; sha256="1wg4rgziw2f8asdxi2a5dx1mn4z0sd1lf9a8fp7dg29bnv82brmh"; depends=[FactoMineR]; };
+missMDA = derive { name="missMDA"; version="1.8.2"; sha256="0rb48psaffvlp3i2d1xv9fk949gpnck85v4ysfzw203r2r4rdhmm"; depends=[FactoMineR]; };
 mistat = derive { name="mistat"; version="1.0-3"; sha256="12fykqkcqfxn8m8wwpw69f7h2f24c5yhg4fw50jsifhcj40kk29q"; depends=[]; };
 mistral = derive { name="mistral"; version="1.1-1"; sha256="19zkc5ddjzw17y70x3l6maljsfvg0295xyzx7kavmjrws74jx4rc"; depends=[DiceKriging e1071 kernlab Matrix mvtnorm rgenoud]; };
 mitml = derive { name="mitml"; version="0.2-2"; sha256="11pgwa1cxf1i2qkm8gyzxsjkhg40r75gk2k1lwaqpqgi7vs3drbs"; depends=[haven pan]; };
 mitools = derive { name="mitools"; version="2.3"; sha256="0w76zcl8mfgd7d4njhh0k473hagf9ndcadnnjd35c94ym98jja33"; depends=[]; };
-mix = derive { name="mix"; version="1.0-8"; sha256="0wlp6wkn8dwwnjfq3qzk0hjb3xsjh5ld5zxbd6nf12awpkwa1j9y"; depends=[]; };
+mix = derive { name="mix"; version="1.0-9"; sha256="08729y6ih3yixcc4a6m8fszg6pjc0s02iq47339b9gj16p82b74z"; depends=[]; };
 mixAK = derive { name="mixAK"; version="4.0-5"; sha256="1kdcia6j2dw4q1rbrswx9h8ivzrnw8hrg5a206jykmsdbngbifx5"; depends=[coda colorspace fastGHQuad lme4 mnormt]; };
 mixOmics = derive { name="mixOmics"; version="5.0-4"; sha256="020cy0x7qf6x7lb1aqfr6qflf08k2phnygcjr7lq4z8q9v502qyh"; depends=[igraph lattice MASS pheatmap RGCCA rgl]; };
 mixPHM = derive { name="mixPHM"; version="0.7-1"; sha256="0v75xv06m40jqq0c4y1gvdrmyddxs814djbpyq61fv8cn22fn7wx"; depends=[lattice survival]; };
@@ -4642,13 +4653,13 @@ mixtox = derive { name="mixtox"; version="1.0"; sha256="059vjrz9isyrdqk2ij4b11da
 mixture = derive { name="mixture"; version="1.4"; sha256="0k9pzcgfjyp0rmcma26kr2n8rcwmijznmdpvqidgl3jay20c87ca"; depends=[]; };
 mizer = derive { name="mizer"; version="0.2"; sha256="0cpal9lrjbvc923h499hbv4pqw3yjd4jvvhgayxgkak2lz2jzmcz"; depends=[ggplot2 plyr reshape2]; };
 mkde = derive { name="mkde"; version="0.1"; sha256="04v84arpnmjrkk88ffphnhkz32x7y0dypk75jfmbbgcgv59xlglv"; depends=[raster Rcpp sp]; };
-mkin = derive { name="mkin"; version="0.9-35"; sha256="0ac71wkl8b034l1bbv8qr5ynvpl8l9j31ych5v5pf6mmqs62bwnr"; depends=[deSolve FME minpack_lm rootSolve]; };
+mkin = derive { name="mkin"; version="0.9-39"; sha256="14yya9fkslk9vplszdxxfa2q1di42nnly67irpl5ry4sgl21nnfp"; depends=[deSolve FME inline minpack_lm rootSolve]; };
 mkssd = derive { name="mkssd"; version="1.1"; sha256="1qqzy6fn6sc3lxahc19hzzf1hzxsyvxqi7npynw0vkknlrvh2ijp"; depends=[]; };
 mlDNA = derive { name="mlDNA"; version="1.1"; sha256="0d9lydiwar98hin26slnym4svn0g1xmyn212vvzsx9lzlvs5a9k4"; depends=[e1071 igraph pROC randomForest ROCR rsgcc snowfall]; };
 mlPhaser = derive { name="mlPhaser"; version="0.01"; sha256="1s2mqlnbcjdkx0ghvr2sw9rzggqa4jy2vzi9vbyqkh6795lgck6n"; depends=[]; };
 mlVAR = derive { name="mlVAR"; version="0.1.0"; sha256="0xychak3xdqnsl9z1ifi0niqsrdc10f6frl6zg162mzpil33wp3g"; depends=[arm lme4 plyr qgraph]; };
 mlbench = derive { name="mlbench"; version="2.1-1"; sha256="1rp035qxfgh5ail92zjh9jh57dj0b8babw3wsg29v8ricpal30bl"; depends=[]; };
-mldr = derive { name="mldr"; version="0.1.70"; sha256="08yiglqzlqxlfrxd7l12x59h7a38skrkkf8w7jh620ab7a7w1gyg"; depends=[circlize shiny XML]; };
+mldr = derive { name="mldr"; version="0.2.25"; sha256="0rwh7gs5qw08x1bx03156qf8bav3yacwi0vzz4yk722gd0wzi88j"; depends=[circlize shiny XML]; };
 mlearning = derive { name="mlearning"; version="1.0-0"; sha256="0r8xfaxw83s2r27b8x5qd0k4r5ayxpkafzn9b1a0jvsr87i6520r"; depends=[class e1071 ipred MASS nnet randomForest]; };
 mlegp = derive { name="mlegp"; version="3.1.4"; sha256="1932544irhzhf6a8rjyh66j57h9awlhwd6xam603bamfg106cmg2"; depends=[]; };
 mleur = derive { name="mleur"; version="1.0-6"; sha256="0mddphq3b6y2jaafaa9y41842kcaqdl3dh7j4pva55q2vcjcclj7"; depends=[fGarch lattice stabledist urca]; };
@@ -4677,9 +4688,10 @@ mnlogit = derive { name="mnlogit"; version="1.2.2"; sha256="01wvlmkf9ddcmsb8pw08
 mnormpow = derive { name="mnormpow"; version="0.1.1"; sha256="0z53vwhkhkkr6zrjhd3yr14mb02vh7lr63frf0ivajndxiap0s9v"; depends=[]; };
 mnormt = derive { name="mnormt"; version="1.5-3"; sha256="1mw5fk4q5cnj2x2938di58179fr51l396qd61i6y5vwmcccj0kn9"; depends=[]; };
 modMax = derive { name="modMax"; version="1.0"; sha256="0p8vnlbw53lqbaq3819jhixq6ns2lwxf56w2md7y98rshf92h474"; depends=[gtools igraph]; };
+modQR = derive { name="modQR"; version="0.1.0"; sha256="0k9rqwi0amq8cln1a6i58xb19cpkjq0qca4vsgq1r2x1370hf9fq"; depends=[geometry lpSolve]; };
 modTempEff = derive { name="modTempEff"; version="1.5.2"; sha256="00xdvc0i3p8wq913giy44w0xz07sa4bdgqpi7pmpbv2c5wj30pk1"; depends=[mgcv]; };
 modeest = derive { name="modeest"; version="2.1"; sha256="0l4y7yhkgsxycdd2lck0g8g6k2r059hwlrrcpl46md3rva4jgbnp"; depends=[]; };
-modehunt = derive { name="modehunt"; version="1.0.6"; sha256="15rq1yyrjhsn2rlkyiqj36jvji635hy6jsih845mfxdpn4vnssa3"; depends=[]; };
+modehunt = derive { name="modehunt"; version="1.0.7"; sha256="0qz9kmf1qfs2dr7kzm9l7ac0h5rvi3b9j9896p991sk4bcalsl0b"; depends=[]; };
 modelObj = derive { name="modelObj"; version="1.0"; sha256="0r4smak9hni9pzih4nzkpv3bq18acrsmmxs1a13wq3pgjfvkwa63"; depends=[]; };
 modelfree = derive { name="modelfree"; version="1.1-1"; sha256="0ammka2wxx90z31zfzypw9dk5n118l0vxhykxbx6srfig2vdyn82"; depends=[PolynomF SparseM]; };
 modeltools = derive { name="modeltools"; version="0.2-21"; sha256="0ynds453xprxv0jqqzi3blnv5w6vrdww9pvd1sq4lrr5ar3k3cq7"; depends=[]; };
@@ -4703,10 +4715,10 @@ morse = derive { name="morse"; version="1.0.2"; sha256="044aljv48mfq6yj9i77yqf03
 mosaic = derive { name="mosaic"; version="0.10.0"; sha256="0hhln6kfxdk6z4rmi3378cs18ziwa5awi53ylnx5kva7f42m5jxr"; depends=[car dplyr ggdendro ggplot2 gridExtra lattice latticeExtra lazyeval MASS mosaicData plyr readr reshape2]; };
 mosaicData = derive { name="mosaicData"; version="0.9.1"; sha256="0gxnw3x806pm97x1043qq3qf1cwn1z1771cayp3xlh5khn5bijk7"; depends=[]; };
 moult = derive { name="moult"; version="1.4"; sha256="0nglf7wijp2v66fpyh88glbn1glp8vvkbvpc1g6136bg6ahbbkkl"; depends=[Formula Matrix]; };
-mountainplot = derive { name="mountainplot"; version="1.0"; sha256="1hjmzig0s4vjlkpqhvf4v6z2gd8ljy14z5n1m9y21is9yp2cy6xf"; depends=[lattice]; };
+mountainplot = derive { name="mountainplot"; version="1.1"; sha256="1l3m7jgq70g83mmfhlwzj5gkdnwgl14g9ljpk6j7z7qxapzva3bb"; depends=[lattice]; };
 mousetrack = derive { name="mousetrack"; version="1.0.0"; sha256="0lf0xh0c3xl27nh5w8wwyrm2jfzfajm2f73xjdgf746dp365qc8n"; depends=[pracma]; };
 movMF = derive { name="movMF"; version="0.2-0"; sha256="1p9ay7w93gyx4janw23iwg2j0wkvnvzalaa20n1rlahhmh327g7i"; depends=[clue skmeans slam]; };
-move = derive { name="move"; version="1.4.496"; sha256="0p20c6rqxk299pqd10icq4a59yn152jfnwh6sw48sg8cc9wp24k3"; depends=[geosphere raster rgdal sp]; };
+move = derive { name="move"; version="1.5.514"; sha256="18rf9d0xxs48l0bk9vvr2sxnm7rcr38cgar0y5xgmh8fdf6dsl65"; depends=[geosphere raster rgdal sp]; };
 mp = derive { name="mp"; version="0.2.0"; sha256="1vpjrx04yn1rdmrhj42rhc757cj02sghrv0i5jfm4k2y28ab7qh1"; depends=[Rcpp RcppArmadillo svd]; };
 mpMap = derive { name="mpMap"; version="1.14"; sha256="0gmhg5ps8yli8699a5aw26skfbjxx4zpp0paqxxdc0zl28l0pdff"; depends=[gdata qtl seriation wgaim]; };
 mpa = derive { name="mpa"; version="0.7.3"; sha256="0mhnsbgr77fkn957zfiw8skyvgd084rja1y4wk5zf08q5xjs2zvn"; depends=[network]; };
@@ -4752,17 +4764,17 @@ multiAssetOptions = derive { name="multiAssetOptions"; version="0.1-1"; sha256="
 multiDimBio = derive { name="multiDimBio"; version="0.3.3"; sha256="1aj6yam31mr0abjb6m5m85r1w71snha4s7h4ikyw66sc73xkmb9m"; depends=[ggplot2 lme4 MASS misc3d pcaMethods RColorBrewer]; };
 multiPIM = derive { name="multiPIM"; version="1.4-3"; sha256="0j7d0cgs8zcyiyibzmfhcandad76sf4gm57wkcv98bf96wkls58l"; depends=[lars penalized polspline rpart]; };
 multiband = derive { name="multiband"; version="0.1.0"; sha256="1f4gmy0yf9zid7kl05zncvvig6hs4nl1h9wkrkc24rxx9risw9k9"; depends=[]; };
-multibiplotGUI = derive { name="multibiplotGUI"; version="0.0-1"; sha256="14zgn86zwwdchhr5dzqxxxsf0dy6kny4ixvd77y08454lni0a69r"; depends=[rgl RODBC tkrplot]; };
+multibiplotGUI = derive { name="multibiplotGUI"; version="1.0"; sha256="0ig7r4p8mq594cjwclbqwjk8saqkvjqjbbnnxj1hc1sdj7qdlcpf"; depends=[cluster dendroextras Matrix rgl shapes tcltk2 tkrplot]; };
 multic = derive { name="multic"; version="0.3.8.1"; sha256="06lc9kn0z3s7x00hz8vj903q0c6cncnj4v3ygvd2yvkgcbhfvjd0"; depends=[]; };
 multicon = derive { name="multicon"; version="1.6"; sha256="16glkgnm4vlpxkhf1xw1gl1q10yavx9479i21v29lldag35z8pqx"; depends=[abind foreach mvtnorm psych sciplot]; };
 multicool = derive { name="multicool"; version="0.1-6"; sha256="0hzwxrcsz7dm4ilv8rpkcwi61ssym94ki8ayssfh2r2ghy9w9xlw"; depends=[Rcpp]; };
 multigroup = derive { name="multigroup"; version="0.4.4"; sha256="1r79zapziz3jkd654bwsc5g0rphrk9hkp1fpik8jvjsa1cix40mq"; depends=[MASS]; };
 multilevel = derive { name="multilevel"; version="2.5"; sha256="0pzv5xc8p6cpzzv9iq3a3ib1dcan445mm12whf3d6qkz2k4778g6"; depends=[MASS nlme]; };
 multilevelPSA = derive { name="multilevelPSA"; version="1.2.2"; sha256="0z3qnv14sdkfvyw2wjrfz26r7sr7vv3rlr8n4gf99rwv6k34bdsg"; depends=[ggplot2 party plyr proto PSAgraphics psych reshape xtable]; };
-multimark = derive { name="multimark"; version="1.1.4"; sha256="045lfgzxwz4m1y5gny2y92cmix6wxi1sl486gajal2scfib31rgv"; depends=[Brobdingnag coda Matrix mvtnorm RMark statmod]; };
+multimark = derive { name="multimark"; version="1.2.0"; sha256="0gc8dla4npgf1g17k7cqphkm82lywh12zvc82ga5446w3ihpvllg"; depends=[Brobdingnag coda Matrix mvtnorm RMark statmod]; };
 multinbmod = derive { name="multinbmod"; version="1.0"; sha256="1c4jyzlcjkqdafj9b6hrqp6zs33q6qnp3wb3d7ldlij7ns9fhg71"; depends=[]; };
 multinomRob = derive { name="multinomRob"; version="1.8-6.1"; sha256="1fdjfk77a79fy7jczhpd2jlbyj6dyscl1w95g64jwxiq4hsix9s6"; depends=[MASS mvtnorm rgenoud]; };
-multipleNCC = derive { name="multipleNCC"; version="1.0"; sha256="13z6yq77h1r6kp8wgza58c6yp9a1gqm0w36x534mxbhcmingdw9f"; depends=[gam survival]; };
+multipleNCC = derive { name="multipleNCC"; version="1.1"; sha256="134a8zm0xz2h9yclc9v2linx881gb3n5x51msifpnm641giamzfd"; depends=[mgcv survival]; };
 multiplex = derive { name="multiplex"; version="1.6"; sha256="052qjqkwf2sp4w7hv5gj9x3vhwjpa6k10sr969283z7aw6c1yb4g"; depends=[]; };
 multipol = derive { name="multipol"; version="1.0-6"; sha256="1yjz0p4mcgzs98s61i8315wyhh986jxp8b0lq66375ckpr2ddcss"; depends=[abind]; };
 multirich = derive { name="multirich"; version="2.0.2"; sha256="1lqc4np45p9ar9l8l1m5bdh98fsmhvzj8s0b2mcp9cqrvnhp1irc"; depends=[]; };
@@ -4820,16 +4832,16 @@ nFCA = derive { name="nFCA"; version="0.3"; sha256="1jyyzagmppm3i7vh3ia4ic0zql1w
 nFactors = derive { name="nFactors"; version="2.3.3"; sha256="016d76yfxz7gx7zz5dgwjmj2c5m6kxdmqj0lln5w6d70r9g1kxg7"; depends=[boot lattice MASS psych]; };
 nLTT = derive { name="nLTT"; version="1.1"; sha256="0hrrwil7vcym7zjbnzviw13p60y14w660vndvc2lm5lmhbb8nhcn"; depends=[ape coda deSolve]; };
 nabor = derive { name="nabor"; version="0.4.6"; sha256="0kd0h8n5yrn16vrfdchdiqzws05q0fm8z577p20dm18gdcs2vbxv"; depends=[BH Rcpp RcppEigen]; };
-nadiv = derive { name="nadiv"; version="2.13.3"; sha256="0ph05a1yvphij41fgm4gnvijqni29n4jx2my6s0pd9l67bwa56c8"; depends=[Matrix]; };
+nadiv = derive { name="nadiv"; version="2.14.0"; sha256="07wrzj5vkz7hgxmlpl4d39crs5bz1xylpq0w13r5w95rwnmn6jzm"; depends=[Matrix]; };
 namespace = derive { name="namespace"; version="0.9.1"; sha256="1bsx5q19l7m3q2qys87izvq06zgb22b7hqblx0spkvzgiiwlq236"; depends=[]; };
 nanop = derive { name="nanop"; version="2.0-5"; sha256="0zdn2hgp516hcqpc2w2vzhhalcr05dlw539zj3afzi75w8rwb71z"; depends=[distrEx rgl]; };
 nasaweather = derive { name="nasaweather"; version="0.1"; sha256="05pqrsf2vmkzc7l4jvvqbi8wf9f46854y73q2gilag62s85vm9xb"; depends=[]; };
-nat = derive { name="nat"; version="1.6.6"; sha256="0jqpj9hrz8xqikl84b9nzi1hh82cmry18vpca7s8dl4824yadkrw"; depends=[digest filehash igraph nabor nat_utils plyr rgl yaml]; };
+nat = derive { name="nat"; version="1.7.0"; sha256="1bdkndj4klvm8i19sw60gpqhbdbsmxn3rrk0iyhd097k96qipkj6"; depends=[digest filehash igraph nabor nat_utils plyr rgl yaml]; };
 nat_nblast = derive { name="nat.nblast"; version="1.5"; sha256="1slpk126fwgn90j3aazlf3pw2ij050dghc1yqadv6mjcj82qpm5i"; depends=[dendroextras nabor nat plyr rgl spam]; };
-nat_templatebrains = derive { name="nat.templatebrains"; version="0.4.1"; sha256="06vqnrwcara4ljkf5wbwqbsfx1ypd8xsv8pbrs5x6hyj5jxnnvaz"; depends=[nat rgl]; };
-nat_utils = derive { name="nat.utils"; version="0.4.2"; sha256="0k5bdqwrbq82bb9ld90ia7b4vjaczba20h231a129rkszsy6sz9v"; depends=[]; };
+nat_templatebrains = derive { name="nat.templatebrains"; version="0.6"; sha256="1qhkpvfpzyzf9qcfdc2a53fqhlxqcrvbb08glwkxmjs49is3fy3k"; depends=[digest igraph nat rappdirs rgl]; };
+nat_utils = derive { name="nat.utils"; version="0.5.1"; sha256="12g87ar795xfbz7wljksb24x9hqvcirjr50y4mbpx1427r0l7clv"; depends=[]; };
 naturalsort = derive { name="naturalsort"; version="0.1.2"; sha256="0m8a8z0n5zmmgpmpn5w87j2jfsz1igz3x133z3q25h8jlyaxy750"; depends=[]; };
-nbconvertR = derive { name="nbconvertR"; version="1.0"; sha256="1yjsw5aq68ya4k1nl2n6q5d5z5yzqskgnpj3gms67ha3dhmz78jr"; depends=[]; };
+nbconvertR = derive { name="nbconvertR"; version="1.0.1"; sha256="1wj8kj7zs6ldy5jc1dh7r637hyllnqk4qns5q767s72zj35kq6s4"; depends=[]; };
 nbpMatching = derive { name="nbpMatching"; version="1.4.5"; sha256="1bglrzhap9rar6c8c2c5009l1ljq44mys66jpafw4xyw2pq7djqg"; depends=[Hmisc MASS]; };
 ncappc = derive { name="ncappc"; version="0.1"; sha256="1145y9k718245mzs8q33mjwcln79dmiyawy771zrk3kpxhfb5985"; depends=[ggplot2 gridExtra gtable knitr lattice PerformanceAnalytics reshape2 scales xtable]; };
 ncbit = derive { name="ncbit"; version="2013.03.29"; sha256="0f07h8v68119rjvgm84b75j0j7dvcrl6dq62vp41adlm2hgjg024"; depends=[]; };
@@ -4850,10 +4862,10 @@ neotoma = derive { name="neotoma"; version="1.3.0"; sha256="0a5fmas441zl479vfndg
 nephro = derive { name="nephro"; version="1.1"; sha256="06lxkk67n5whgc78vrr7gxvnrz38pxlsj4plj02zv9fwlzbb9h6p"; depends=[]; };
 nestedRanksTest = derive { name="nestedRanksTest"; version="0.2"; sha256="0r08jp8036cz2dl1mjf4qvv5qdcvsrad3cwj88x31xx35c4dnjgj"; depends=[]; };
 netClass = derive { name="netClass"; version="1.2.1"; sha256="04yrj71l5p83rpwd0iaxdkhm49z9qp3h6b7rp9cgav244q060m9y"; depends=[AnnotationDbi graph igraph kernlab Matrix ROCR samr]; };
-netassoc = derive { name="netassoc"; version="0.4.3"; sha256="153zgnmk9qjcxhfdy9g1fkgjx0vpyv55gmj4spk664igvw6kicf3"; depends=[igraph]; };
+netassoc = derive { name="netassoc"; version="0.4.7"; sha256="1i40njarcdddlclsizd7p9bvan70lc32d9a3qjgdp5bs6mm9l4kx"; depends=[igraph]; };
 netgen = derive { name="netgen"; version="1.1"; sha256="0wbsssskhih6fyb0xfpnd3sjp25z8h0jyy3437ykgh7g24hh0i1z"; depends=[BBmisc checkmate ggplot2 igraph lhs lpSolve mvtnorm stringr]; };
 netgsa = derive { name="netgsa"; version="2.0"; sha256="04id2wcrmi0lqvn4a8qhqkc3z076b8xd7jhw9hsmaz21g9cxdfx8"; depends=[corpcor cvTools glasso glmnet igraph]; };
-netmeta = derive { name="netmeta"; version="0.7-0"; sha256="0nsy817bj3fh4sz632pljyjn7jphg9w389hhdcyjvkb7i43c9v5c"; depends=[magic meta]; };
+netmeta = derive { name="netmeta"; version="0.8-0"; sha256="0qadg3h9aa3qx51hvqikzb5s087r5ihmp6ffxg5x1bmw86yfi2bq"; depends=[magic meta]; };
 nets = derive { name="nets"; version="0.1"; sha256="0zshiavdi1z8mq6q93vsyb5wx5nq37qln9gcyvamvi2pgy5xg4k2"; depends=[igraph]; };
 nettools = derive { name="nettools"; version="1.0.1"; sha256="13fw316r31g9cjlbyy9qfccsyagxb6pyvn5k32f166b7vj92mk1q"; depends=[combinat dtw igraph Matrix minerva minet rootSolve WGCNA]; };
 netweavers = derive { name="netweavers"; version="1.1"; sha256="0p8hb3m0lbkf0pw9vdhv94spdba432klpqgn07jvxfhfhmr8cyz0"; depends=[Biobase BiocGenerics igraph limma]; };
@@ -4868,7 +4880,7 @@ neuRosim = derive { name="neuRosim"; version="0.2-12"; sha256="1hsnw9xipdr74fydq
 neural = derive { name="neural"; version="1.4.2.2"; sha256="05hrqgppgwp38rdzw86naglxj0bz3wqv04akq7f0jxbbjc6kwy4j"; depends=[]; };
 neuralnet = derive { name="neuralnet"; version="1.32"; sha256="0p9r5j8q0flv15wn5s6qi9if7npna107l1ffv37nzx1b4vgswnl9"; depends=[MASS]; };
 neuroblastoma = derive { name="neuroblastoma"; version="1.0"; sha256="0hs87fvwaq53xxbh2dw3hjsmf1zkyqli9qyacxf72fnkyhhl8b45"; depends=[]; };
-neuroim = derive { name="neuroim"; version="0.0.3"; sha256="0n5jkyvdaiigv51s5bb508w5xkh0qkd1zbs67nnms14s1664fhiz"; depends=[abind hash iterators Matrix stringr yaImpute]; };
+neuroim = derive { name="neuroim"; version="0.0.4"; sha256="1xz7695l5xpc28jdmpirk4f9s1d3zg5cxzhk89hknkl1wyxc15hx"; depends=[abind assertthat hash iterators Matrix Rcpp stringr yaImpute]; };
 ngram = derive { name="ngram"; version="1.1"; sha256="0p5wm55anch1i0y3478f5d4sivs7q8j3kwlg89nk3337win06499"; depends=[]; };
 ngramr = derive { name="ngramr"; version="1.4.5"; sha256="1cqapla0lknxl669w5x3av9nr4vy9qrfznznqj22xlqaj0p53c18"; depends=[ggplot2 httr plyr RCurl reshape2 rjson scales stringr]; };
 ngramrr = derive { name="ngramrr"; version="0.1.1"; sha256="1h12nm0dg2mkq5b2zn12cij24nl8inqn04m4jxdi1lr6r81y1wsq"; depends=[tau]; };
@@ -4876,10 +4888,9 @@ ngspatial = derive { name="ngspatial"; version="1.0-5"; sha256="0dd7gm6irq08054n
 nhlscrapr = derive { name="nhlscrapr"; version="1.8"; sha256="0y2shw3g84flh88a15czdsb62xwdqxhvzkn4kpbn0k9ddyfzxc48"; depends=[biglm bitops RCurl rjson]; };
 nice = derive { name="nice"; version="0.4"; sha256="1alq8n8pchn9v0fvwrifdisazkh519x109bqgnpgnwf79wblmnhy"; depends=[]; };
 nicheROVER = derive { name="nicheROVER"; version="1.0"; sha256="0sa7wfpzkin78vz48vwa5iac82v5l1s3zczdxz8sc2kyg22fj0aw"; depends=[mvtnorm]; };
-nlADG = derive { name="nlADG"; version="0.1-0"; sha256="0nvd5hzd1p81jwx5p7js86wblgg615vdnpbvy5rhmhf1ig583z1b"; depends=[ggm]; };
 nlWaldTest = derive { name="nlWaldTest"; version="1.0.1"; sha256="1rwpkkddivpcamhsp22nmy5gz2006y9kbdzj8lhh20s1vsyhn2b3"; depends=[numDeriv stringr]; };
 nleqslv = derive { name="nleqslv"; version="2.8"; sha256="1jkf02mcz16d8h8b7h5m13lpx6z2shpap5vncapszwa9js6vps67"; depends=[]; };
-nlme = derive { name="nlme"; version="3.1-120"; sha256="1ji8nrf714nf18by9g7k4czkgnj1cq464pvjv195c5fnhwhmpmjc"; depends=[lattice]; };
+nlme = derive { name="nlme"; version="3.1-121"; sha256="15cki2xn1d3bsb20kav18kmdj9r3v7kz89wmh8c7qcx75qbmr3zd"; depends=[lattice]; };
 nlmeODE = derive { name="nlmeODE"; version="1.1"; sha256="1zp1p98mzbfxidl87yrj2i9m21zlfp622dfnmyg8f2pyijhhn0y2"; depends=[deSolve lattice nlme]; };
 nlmeU = derive { name="nlmeU"; version="0.70-3"; sha256="05kxymgybziiijpb17bhcd9aq4awmp5km67l2py9ypakivi0hc6l"; depends=[nlme]; };
 nlmrt = derive { name="nlmrt"; version="2013-9.25"; sha256="0z2ih61rpqzk64qagiwbx396vwb28jhqk8b4kxchca0il3fzqqav"; depends=[]; };
@@ -4893,7 +4904,7 @@ nlstools = derive { name="nlstools"; version="1.0-1"; sha256="00m2x587gvrbgs7wdk
 nlt = derive { name="nlt"; version="2.1-3"; sha256="1j0xrrbr1hvfda8rvnc17lj96m6cz24faxvwn68ilf7j1ab2lkgn"; depends=[adlift EbayesThresh]; };
 nlts = derive { name="nlts"; version="0.2-0"; sha256="14kvzc1p4anj9f7pg005pcbmc4k0917r49pvqys9a0a51ira67vb"; depends=[acepack locfit]; };
 nmcdr = derive { name="nmcdr"; version="0.3.0"; sha256="1557pdv7mqdjwpm6d9zw3zfbm1s8ai3rasd66nigscmlq102w745"; depends=[CDFt]; };
-nnet = derive { name="nnet"; version="7.3-9"; sha256="1z1lhi35w5l7l645d764w9h4aiv6hapjv8fwb9b51b36vyg1r0zg"; depends=[]; };
+nnet = derive { name="nnet"; version="7.3-10"; sha256="0jmhl86bki1a21na2ln5m69kqkj856891jwy73nl8qcr51vl0q7i"; depends=[]; };
 nnlasso = derive { name="nnlasso"; version="0.2"; sha256="1q1psc6s5xw2nsz09q20n5rksq07gx21q9ap22dr7haln5jrvpzr"; depends=[]; };
 nnls = derive { name="nnls"; version="1.4"; sha256="07vcrrxvswrvfiha6f3ikn640yg0m2b4yd9lkmim1g0jmsmpfp8f"; depends=[]; };
 nodeHarvest = derive { name="nodeHarvest"; version="0.7-3"; sha256="0nh3g50rk9qzrarpf29kijwkz9v60682i0ag77j2ipyvhhbpwpkc"; depends=[quadprog randomForest]; };
@@ -4926,7 +4937,7 @@ npbr = derive { name="npbr"; version="1.1"; sha256="011zmz1s6kkdgylkl6dc79dpardg
 npcp = derive { name="npcp"; version="0.1-1"; sha256="0b2mqx0zrvai5aw6b47qpi4bwcfjrv0bh8ahrgx7n1sf045grm3a"; depends=[]; };
 npde = derive { name="npde"; version="2.0"; sha256="1cp4k7jvsw9rc6rrck902nqqjaf2c1nxjic7i9r3fd6yca1lgqb9"; depends=[mclust]; };
 nplplot = derive { name="nplplot"; version="4.5"; sha256="1dpbs0jb34gv0zj528357z1j2pwahjbp04rm7jir6qk0jhyaxxgh"; depends=[]; };
-nplr = derive { name="nplr"; version="0.1-1"; sha256="0br7flriqbig8frq0j4lxiv6i8bwgsj422faln85ga93hnlky0a1"; depends=[]; };
+nplr = derive { name="nplr"; version="0.1-2"; sha256="1xs02i14kgggf1gfs612l2jk37z60dxqgrxs6rswzchvlyzwcxd0"; depends=[]; };
 npmlreg = derive { name="npmlreg"; version="0.46-1"; sha256="1gddl6diw8ix8vz7n1r4ps9cjx3q00mafpapskjk7pcz69m6hfv1"; depends=[statmod]; };
 npmv = derive { name="npmv"; version="2.2"; sha256="1aqlx1y3bxbqp13q0vajwffj8srb6s04d5r2h08m9fk5hhp9l3jf"; depends=[Formula]; };
 nppbib = derive { name="nppbib"; version="1.0-0"; sha256="075jb13zckkh66jwdmdlq4d2drjcc3lkj26px3w79b91223yymf2"; depends=[]; };
@@ -4947,6 +4958,7 @@ nutshell_audioscrobbler = derive { name="nutshell.audioscrobbler"; version="1.0"
 nutshell_bbdb = derive { name="nutshell.bbdb"; version="1.0"; sha256="19c4047rjahyh6wa6kcf82pj09smskskvhka9lnpchj13br8rizw"; depends=[]; };
 nws = derive { name="nws"; version="1.7.0.1"; sha256="1fn92n6brjhh8hpvhax7211cphx2cn0rl99kjqksig6z7242c316"; depends=[]; };
 nycflights13 = derive { name="nycflights13"; version="0.1"; sha256="15bqaphxwqpdzr4bkn6qgbjb3knja5hk34qxjd6xhpjzkgfs5c0b"; depends=[]; };
+oapackage = derive { name="oapackage"; version="2.0.22"; sha256="0qskkzb4xlxz2qkxapcckxfwc5fv0s80kbndsvzcy3pqjzrykvys"; depends=[RcppEigen]; };
 oaxaca = derive { name="oaxaca"; version="0.1.2"; sha256="1ghdrpjp2p4nlwskvs8n8d8ixzf3cdq9k9q49zvq8ag0dhwyswzd"; depends=[Formula ggplot2 reshape2]; };
 objectProperties = derive { name="objectProperties"; version="0.6.5"; sha256="0wn19byb1ia5gsfmdi6cj05pnlxbr3zcrjabjg3g1d7b58nz7wlh"; depends=[objectSignals]; };
 objectSignals = derive { name="objectSignals"; version="0.10.2"; sha256="1rcgfq1i3nz2q93vv4l069f3mli1c6fd5dhhhw1p7cc4sy81008w"; depends=[]; };
@@ -4975,13 +4987,13 @@ onlinePCA = derive { name="onlinePCA"; version="1.0-1"; sha256="0gca0ijcc30b3z5i
 onls = derive { name="onls"; version="0.1-0"; sha256="1kfgikswddly9lar6wa1hhz89rap0pql9h181s7i68wa20xdg05z"; depends=[minpack_lm]; };
 opefimor = derive { name="opefimor"; version="1.1"; sha256="0xv57l38wx3w67h312g5xcpi9m7ggd6crqvqjh5gddq0g1g93bjq"; depends=[]; };
 openNLP = derive { name="openNLP"; version="0.2-5"; sha256="0jc4ii6zsj0pf6nlx3l0db18p6whp047gzvc7q0dbwpa8q4il2mb"; depends=[NLP openNLPdata rJava]; };
-openNLPdata = derive { name="openNLPdata"; version="1.5.3-1"; sha256="1a048irgv56yi2lvhpqh8vh4dl7g7zfg934qypjxg8mcdcqi820y"; depends=[rJava]; };
+openNLPdata = derive { name="openNLPdata"; version="1.5.3-2"; sha256="1472gg651cdd5d9xjxrzl3k7np77liqnh6ysv1kjrf4sfx13pp9q"; depends=[rJava]; };
 openair = derive { name="openair"; version="1.5"; sha256="0swhaldfhz6zgs50aws18kypilv15k7w99nqcmb7y0wgvkkwda2h"; depends=[cluster dplyr hexbin lattice latticeExtra lazyeval mapdata mapproj maps mgcv plyr RColorBrewer Rcpp reshape2 RgoogleMaps]; };
 opencpu = derive { name="opencpu"; version="1.4.6"; sha256="19anprhkwqw2kii417qy3laalrlj207zfvklc05m0vz9sra7sxj0"; depends=[brew devtools evaluate httpuv httr jsonlite knitr openssl]; };
 openintro = derive { name="openintro"; version="1.4"; sha256="1k6pzlsrqikbri795vic9h191nf2j7v7hjybjfkrx6847c1r4iam"; depends=[]; };
 openssl = derive { name="openssl"; version="0.4"; sha256="1gfhzxjjssid2z8xmw3vnnd4gj2f6a3zzazkhpg9b1ymmcp9b288"; depends=[]; };
 opentraj = derive { name="opentraj"; version="1.0"; sha256="13nqal96199l8vkgmkvl542ksnappkscb6rbdmdapxyi977qrgxk"; depends=[doParallel foreach maptools openair plyr raster reshape rgdal sp]; };
-openxlsx = derive { name="openxlsx"; version="2.4.0"; sha256="1jzq3lz9qivsprmn8aibwiidcwsanlnfpmsz2ccw3650gdgk3zdk"; depends=[Rcpp]; };
+openxlsx = derive { name="openxlsx"; version="3.0.0"; sha256="1vx5qmhlyrlwrswbhd95jjcsldcdpdp7gs341dmham26sdzdx658"; depends=[Rcpp]; };
 operator_tools = derive { name="operator.tools"; version="1.4.4"; sha256="1ridxi3pbylb4flfgn371n1v9796rnd1ndxhh6ijyzpysqqmwi08"; depends=[]; };
 operators = derive { name="operators"; version="0.1-7"; sha256="1qik9ihv5blz77bzsnrslf665ndpa8vp3xldqsgvs4gr5bg5algw"; depends=[]; };
 ops = derive { name="ops"; version="1.0"; sha256="0cvwyn5sz5lx8sin8w4k8ymslfl4nfaa012a9vcl2hvp4850rk25"; depends=[]; };
@@ -5010,7 +5022,7 @@ ordPens = derive { name="ordPens"; version="0.3-1"; sha256="0yzf3qzi4p7xqimihjvr
 orddom = derive { name="orddom"; version="3.1"; sha256="165axs15fvwhrp89xd87l81q3h2qjll1vrwcsap645cwvb85nwsh"; depends=[psych]; };
 orderbook = derive { name="orderbook"; version="1.03"; sha256="0dlvjrzdhhh8js4g1lvxs46q7fdxfxavxnb4nj6xlwca75i51675"; depends=[hash lattice]; };
 orderedLasso = derive { name="orderedLasso"; version="1.7"; sha256="0vrh89nrmpi8xscvambcb1y70gqqi5819a2gxh02h4pnyjn8axql"; depends=[ggplot2 Iso Matrix quadprog reshape2]; };
-ordinal = derive { name="ordinal"; version="2015.1-21"; sha256="1vhkxdsapmah09vzy6xd00kb1ck02vbiyamv5ccflxdbdmch1q1y"; depends=[MASS Matrix ucminf]; };
+ordinal = derive { name="ordinal"; version="2015.6-28"; sha256="0lckjzjq2k8rlibrjf5s0ccf17vcvns5pgzvjjnl3wibr2ff4czs"; depends=[MASS Matrix ucminf]; };
 ordinalCont = derive { name="ordinalCont"; version="0.4"; sha256="1inms74l4zx6r526xd0v79v18bcqa76xwsgfvap0fizyv2dvgpim"; depends=[boot fastGHQuad ucminf]; };
 ordinalgmifs = derive { name="ordinalgmifs"; version="1.0.2"; sha256="1rbn2mb516hdr0chny1849m1aq0vb0vmr636b4fp914l5zh75vgi"; depends=[]; };
 ore = derive { name="ore"; version="1.1.0"; sha256="1khgjd5fl8vi9n9pj4nbai6fbfbiwzc121a0gf7dfk727iid8whq"; depends=[]; };
@@ -5072,17 +5084,19 @@ panelAR = derive { name="panelAR"; version="0.1"; sha256="1ka2rbl9gs65xh2y2m4aqw
 panelaggregation = derive { name="panelaggregation"; version="0.1"; sha256="19426hab4rvgn8k2c7x327k4ymihas59jbys0nmrfgg074x0xdnm"; depends=[data_table]; };
 papeR = derive { name="papeR"; version="0.6-1"; sha256="1h3mfapn31qphaly01j5pw2ci65g4z0wh4m1wf5r808cspn0mya0"; depends=[car gmodels]; };
 parallelMCMCcombine = derive { name="parallelMCMCcombine"; version="1.0"; sha256="05krkd643awqhfrylq9lxr2cmgvnm1msn2x8p1l1483n2gzyklz7"; depends=[mvtnorm]; };
+parallelML = derive { name="parallelML"; version="1.2"; sha256="05j0rb81i8342m8drwgmgi1w30q96yf501d83cdq4zhjbchphbl1"; depends=[doParallel foreach]; };
 parallelMap = derive { name="parallelMap"; version="1.3"; sha256="026d018fr2a43cbh8bi2dklzr9fxjzdw5qyq84g2i18v5ibr6bd5"; depends=[BBmisc checkmate]; };
-parallelSVM = derive { name="parallelSVM"; version="0.1-8"; sha256="19hmagv95nx8aw8xylk5vvpxw9a4fsa68r9q0x6irhq50wmah93r"; depends=[doParallel e1071 foreach]; };
+parallelSVM = derive { name="parallelSVM"; version="0.1-9"; sha256="0nhxkllpjc3775gpivj8c5a9ssl42zgvswwaw1sdhwg3cxcib99h"; depends=[doParallel e1071 foreach]; };
 parallelize_dynamic = derive { name="parallelize.dynamic"; version="0.9-1"; sha256="03zypcvk1iwkgy6dmd5bxg3h2bqvjikxrbzw676804zi6y49mhln"; depends=[]; };
-paramlink = derive { name="paramlink"; version="0.9-6"; sha256="0pazllkjbqzvl9vmpvr67lkcsd960mipcd1p1nf00y8hknrwh7qp"; depends=[kinship2 maxLik]; };
+paramlink = derive { name="paramlink"; version="0.9-7"; sha256="02h7znac93v8ibra3ni2psxc9lpfhiiw4q8asfyrx400345ifk5b"; depends=[kinship2 maxLik]; };
 paran = derive { name="paran"; version="1.5.1"; sha256="0nvgk01z2vypk5bawkd6pp0pnbgb54ljy0p8sc47c8ibk242ljqk"; depends=[MASS]; };
 parboost = derive { name="parboost"; version="0.1.4"; sha256="087b4as0w8bckwqpisq9mllvm523vlxmld3irrms13la23z6rjvf"; depends=[caret doParallel glmnet iterators mboost party plyr]; };
 parcor = derive { name="parcor"; version="0.2-6"; sha256="10bhw50g8c4ln5gapa7wghhb050a3jmd1sw1d1k8yljibwcbbx36"; depends=[Epi GeneNet glmnet MASS ppls]; };
 parfm = derive { name="parfm"; version="2.5.8"; sha256="05bzmm5ahaip5apsv84fbqy8bag9pkkfsxvqw1cbcvlbr2zyxfgp"; depends=[eha msm survival]; };
 parfossil = derive { name="parfossil"; version="0.2.0"; sha256="12gsc5n4ycvhzxvq5j0r3jnnrzw1q412dbvmakipyw2yx2l2s7jn"; depends=[foreach fossil]; };
-parma = derive { name="parma"; version="1.5-1"; sha256="0qrq3bx0amri9b3s6bym4znnk140jjd2abnvqyihaj4bf2glbl0g"; depends=[corpcor FRAPO nloptr quadprog Rglpk slam]; };
+parma = derive { name="parma"; version="1.5-2"; sha256="1yvk0wfcc1mgz2bif6hvw5l7zclbv4pz1cki0ymslrmxapjqnsz8"; depends=[corpcor FRAPO nloptr quadprog Rglpk slam truncnorm]; };
 parmigene = derive { name="parmigene"; version="1.0.2"; sha256="1fsm6pkr17jcbzkj1hbn91jf890fviqk1lq6ls8pihsdgah1zb4d"; depends=[]; };
+parsec = derive { name="parsec"; version="1.1"; sha256="02sj2n34n4c6db5s15hbprcx1appasyj8vh2c8my2mppfrk7cnc7"; depends=[]; };
 parsedate = derive { name="parsedate"; version="1.1.1"; sha256="0mr97rw4fzg2v9dh5d4x0b76d5s56gi6zilq69yjhbx78w46apzc"; depends=[]; };
 partDSA = derive { name="partDSA"; version="0.9.10"; sha256="1j6ihgyjiy8dnr89xkqvl1dkmdswvknffq7zc15civy0h781azv6"; depends=[survival]; };
 partialAR = derive { name="partialAR"; version="1.0.5"; sha256="1d8nbv3rkf0p4vg8mlb1l5cqzgsqqhigwiq2bnd4npak6fq6syvg"; depends=[data_table FKF ggplot2 MASS plot3D Rcpp tseries urca zoo]; };
@@ -5100,7 +5114,7 @@ pastecs = derive { name="pastecs"; version="1.3-18"; sha256="0ixlnc1psgqgm71bsf5
 pastis = derive { name="pastis"; version="0.1-2"; sha256="0211pzj3xrmqgxjpspij95kmlpa2klpicw49n6pnz2g1fapjy2bd"; depends=[ape caper]; };
 patchDVI = derive { name="patchDVI"; version="1.9.1616"; sha256="1akdlzw8v2p1zz09bm88d63jyxj7fv5h50p459p9ml4yc816xvji"; depends=[]; };
 patchPlot = derive { name="patchPlot"; version="0.1.5"; sha256="1b4k0dvvj6qwyxbqb36knyrawvy5qq8hl45pz896c9rkqhlg02bx"; depends=[datautils]; };
-patchSynctex = derive { name="patchSynctex"; version="0.1-2"; sha256="1ssjs4mcsjad7g0yfi5sxwfyywsziry81rzwb4sly3afw8g538p9"; depends=[stringr]; };
+patchSynctex = derive { name="patchSynctex"; version="0.1-3"; sha256="0gbbdszrprshcpnpbnvqmx0wlij2d36fw94ssfbx11d7fmjpaj37"; depends=[stringr]; };
 pathClass = derive { name="pathClass"; version="0.9.4"; sha256="1vzmz3bml37wfxsjhkw9fip90sr1iv521ccr7nlf6xd30wavqywk"; depends=[affy Biobase igraph kernlab lpSolve ROCR svmpath]; };
 pathdiagram = derive { name="pathdiagram"; version="0.1.9"; sha256="1j2h9mmwfi95nwhk9214kcfpb1qrmw249mjaza7i9gijmlicraxz"; depends=[shape]; };
 pathmox = derive { name="pathmox"; version="0.2.0"; sha256="0hcllnpjjays35yngz309f1gcx9qg5z9h302kg9mhxs90470x4w0"; depends=[plspm tester]; };
@@ -5122,14 +5136,13 @@ pbkrtest = derive { name="pbkrtest"; version="0.4-2"; sha256="1yppp24a8rl36x6sn1
 pbo = derive { name="pbo"; version="1.3.4"; sha256="0v522z36q48k4mx5gym564kgvhmf08fsadp8qs6amzbgkdx40yc4"; depends=[lattice]; };
 pbs = derive { name="pbs"; version="1.1"; sha256="0cpgs6k5h8y2cia01zs1p4ri8r7ljg2z4x8xcbx73s680dvnxa2w"; depends=[]; };
 pcIRT = derive { name="pcIRT"; version="0.1"; sha256="0vfbbmnp4jyrbi5d9gz1krh707aazbrqfcgc3rjrwwyjld11wyzn"; depends=[combinat]; };
-pca3d = derive { name="pca3d"; version="0.3"; sha256="01nc4p68r7bnly18q8rkhnnj6vq9mwbb5hhdcblan6nhhlzhnld0"; depends=[rgl]; };
-pcaBootPlot = derive { name="pcaBootPlot"; version="0.1.0"; sha256="0h5i5qh4lhnhh7n9k1map10gvw70f7576gnxhjjc6l03sngm0yp7"; depends=[RColorBrewer]; };
+pca3d = derive { name="pca3d"; version="0.8"; sha256="03ghncfpma1fwby8kxm0v90l795mknz8s4y81l24f3n7mmhighn6"; depends=[ellipse rgl]; };
+pcaBootPlot = derive { name="pcaBootPlot"; version="0.2.0"; sha256="1320d969znk9xvm1ylhc3a31nynhzyjpbg1fsryq72nhf8jxijaa"; depends=[FactoMineR RColorBrewer]; };
 pcaL1 = derive { name="pcaL1"; version="1.3"; sha256="026cgi812kvbkmaryd3lyqnb1m78i3ql2phlvsd2r691y1j8w532"; depends=[]; };
 pcaPP = derive { name="pcaPP"; version="1.9-60"; sha256="1rqq4zgik7cgnnnm8il1rxamp6q9isznac8fhryfsfdcawclfjws"; depends=[mvtnorm]; };
-pcalg = derive { name="pcalg"; version="2.2-0"; sha256="1cgir5h9g8v3kjmdqnnjsc0z1f8wl3flnnxnk9y7km82x5pby0m7"; depends=[abind bdsmatrix BH clue corpcor fastICA ggm gmp graph igraph RBGL Rcpp RcppArmadillo robustbase sfsmisc vcd]; };
+pcalg = derive { name="pcalg"; version="2.2-2"; sha256="1cfjzknrlykxs42kyjjy4b09d8qkpl7kjivx0w8dxbgs03r6cmkl"; depends=[abind bdsmatrix BH clue corpcor fastICA ggm gmp graph igraph RBGL Rcpp RcppArmadillo robustbase sfsmisc vcd]; };
 pcg = derive { name="pcg"; version="1.1"; sha256="194j72hcp7ywq1q3dd493pwkn1fmdg647gmhxcd1jm6xgijhvv87"; depends=[]; };
 pcnetmeta = derive { name="pcnetmeta"; version="2.2.1"; sha256="0y4sn1aby38c458667fsy2ndq64i8kknmzdc32mbvzd530p1yxai"; depends=[coda rjags]; };
-pcrcoal = derive { name="pcrcoal"; version="1.1"; sha256="17mm13xpmghachiqr7v2691jk39mbfsadpg028gs3iiwmh0pksa0"; depends=[ape ggplot2 phylosim]; };
 pcse = derive { name="pcse"; version="1.9"; sha256="04vprsvcmv1ivxqrrvd1f8ifg493byncqvmr84fmc0jw5m9jrk3j"; depends=[]; };
 pdR = derive { name="pdR"; version="1.3"; sha256="0y81nlvq5vwf6021m5ns6j4l44c5456jkbs2x9y7jfkw6r3v2ddf"; depends=[]; };
 pdc = derive { name="pdc"; version="1.0.2"; sha256="0d7p65rkwrh39njhszdrbv25z4jz27746y1qyhqmhkxmvkx6g1fl"; depends=[]; };
@@ -5146,7 +5159,7 @@ pedgene = derive { name="pedgene"; version="2.1"; sha256="0nmp1s0i5b4h45p3f4rvvi
 pedigree = derive { name="pedigree"; version="1.4"; sha256="1dqfvzcl6f15n4d4anjkd0h8vwsbxjg1lmlj33px8rpp3y8xzdgw"; depends=[HaploSim Matrix reshape]; };
 pedigreemm = derive { name="pedigreemm"; version="0.3-3"; sha256="1bpkba9nxbaxnivrjarf1p2p9dcz6smf9k2djawis1wq9dhylvsb"; depends=[lme4 Matrix]; };
 pedometrics = derive { name="pedometrics"; version="0.6-2"; sha256="137685gyd7k9vpjnsy6h280cdbl15bchrizfnalnz6nizi0q85lj"; depends=[car gstat Hmisc lattice latticeExtra MASS moments pbapply plyr Rcpp sp spsurvey xtable]; };
-pegas = derive { name="pegas"; version="0.8"; sha256="0074r6vsnvdc0gkqhb3cb4dybpgp4ryf38lrfkk8vrs3y9gb7hdh"; depends=[adegenet ape]; };
+pegas = derive { name="pegas"; version="0.8-1"; sha256="116r709qp9hcvmvfn6xsis13284nl429sfc9d91p1c7fy8fl46q5"; depends=[adegenet ape]; };
 penDvine = derive { name="penDvine"; version="0.2.2"; sha256="054vw99z68pk0bi4yzdmvx13x8n75sj2371l8w2yady1lqjj4qi7"; depends=[fda lattice Matrix quadprog TSP]; };
 penMSM = derive { name="penMSM"; version="0.99"; sha256="1xdcxnagvjdpgnfa5914gb41v5y4lsvh63lbz1d2l8bl9mpff3lm"; depends=[Rcpp]; };
 penalized = derive { name="penalized"; version="0.9-45"; sha256="0svmhsh0lv3d571jyhk73zd9slcd6xnp3p0l1ijab9gl2rjhlzz5"; depends=[survival]; };
@@ -5158,12 +5171,11 @@ pensim = derive { name="pensim"; version="1.2.9"; sha256="10nrnxwfs41bhybs7j6xgn
 peperr = derive { name="peperr"; version="1.1-7"; sha256="01a6sxcmb8v2iz2xdwhdnr92k3w2vn3hr0hg9b6mkpzjf4n45q3k"; depends=[snowfall survival]; };
 peplib = derive { name="peplib"; version="1.5.1"; sha256="1bdgmwbk76ryl5gxcgf3slds92yilg9p1x1lx0hnzzwcgx99wif3"; depends=[]; };
 peptider = derive { name="peptider"; version="0.2"; sha256="1mrwa5pcmc0vbs7n39003bxia2hd6msjkl0j0b21d05accbvzph1"; depends=[discreteRV dplyr plyr]; };
-pequod = derive { name="pequod"; version="0.0-3"; sha256="14nag0bd2icg294y7n47c6xlw54rrdia887d2ni6achjqgwvffzh"; depends=[car ggplot2]; };
+pequod = derive { name="pequod"; version="0.0-4"; sha256="12gmdfhi4dh5zhy3mwgjlpwhkqj8irwbcj13f0z23001hpis3wmh"; depends=[car ggplot2]; };
 perARMA = derive { name="perARMA"; version="1.5"; sha256="1d9vrxv8r6qgxhaz3pv8n34c526gi5cd8w7wxy9qc914y8kplmzr"; depends=[corpcor gnm matlab Matrix signal]; };
 performanceEstimation = derive { name="performanceEstimation"; version="1.0.1"; sha256="102f6h8cqmfb1ch9amf9qhm4p5r8i8236z8yfpg645vbkcc3i78n"; depends=[doParallel foreach ggplot2]; };
 perm = derive { name="perm"; version="1.0-0.0"; sha256="0075awl66ynv10vypg63fcxk33qzvxddrp8mi4w08ysvimcyxijk"; depends=[]; };
 permGPU = derive { name="permGPU"; version="0.14.6"; sha256="1h01nfq8hn7i29xanma70q6s5mj83znbb2lg9x7bjgdrgj38vy2m"; depends=[Biobase foreach RUnit survival]; };
-permtest = derive { name="permtest"; version="1.2"; sha256="1sciyjs840h004zg8bwclq0j0n22anvjvx3fz62y4dzblrynhrci"; depends=[]; };
 permute = derive { name="permute"; version="0.8-4"; sha256="1z5pmq9dy93rpsdb73waqrqmnvvi9ygx1v5l81a2n1j1kb4lmksv"; depends=[]; };
 perry = derive { name="perry"; version="0.2.0"; sha256="1lfmcq2xsxmfs7cxvhgxcsggslgjicbaks4wcjw1yjh67n559j46"; depends=[ggplot2 robustbase]; };
 persiandictionary = derive { name="persiandictionary"; version="1.0"; sha256="0rgi36ngpiax3p5zk4cdgf3463vgx7zg5wxscs2j7834yh37jwax"; depends=[]; };
@@ -5180,16 +5192,15 @@ phalen = derive { name="phalen"; version="1.0"; sha256="0awj9a48dy0azkhqkkzf82q7
 phangorn = derive { name="phangorn"; version="1.99-13"; sha256="1d6awphvzkznqvp30bxdi6j6chlakfxrvmkk9a4by21fxa29xmp9"; depends=[ape igraph Matrix nnls quadprog]; };
 phaseR = derive { name="phaseR"; version="1.3"; sha256="1hwclb7lys00vc260y3z9428b5dgm7zq474i8yg0w07rxqriaq2h"; depends=[deSolve]; };
 phcfM = derive { name="phcfM"; version="1.2"; sha256="0i1vr8rmq5zs34syz2vvy8c9603ifzr9s5v2izh1fh8xhzg7655x"; depends=[coda]; };
-pheatmap = derive { name="pheatmap"; version="1.0.2"; sha256="0nmq5w2jcljbd81v428xl4mvqzrm4vxxlwyhkimi4hj8a9rqw743"; depends=[gtable RColorBrewer scales]; };
+pheatmap = derive { name="pheatmap"; version="1.0.7"; sha256="0dvflwkwvnlh36w5z3ai1q2rgclrgs1qzh01nxgz9kd23imqp0q8"; depends=[gtable RColorBrewer scales]; };
 phenability = derive { name="phenability"; version="2.0"; sha256="0can8qgdpfr4h6jfg23cnwh7hhmwv6538wg2jla9w138la7rhpd1"; depends=[calibrate]; };
 phenex = derive { name="phenex"; version="1.0-7"; sha256="0q563cv9lskikf3ls0idp56lirw9gxn71rgxp9xn8an05gwdg0xr"; depends=[]; };
 phenmod = derive { name="phenmod"; version="1.2-3"; sha256="0dxwx8c7zka29fq7svrvn8bghj8jh8grbrgsw4pvavx2439cldak"; depends=[gstat lattice pheno RColorBrewer]; };
 pheno = derive { name="pheno"; version="1.6"; sha256="0xdya1g1ap7h12c6zn3apbkxr725rjhcp4gbdchkvcnwz4y9vw8c"; depends=[nlme quantreg SparseM]; };
 pheno2geno = derive { name="pheno2geno"; version="1.3.1"; sha256="1k1hw5qxrwxy502zkcfcz0nxjqmvdk1fgghjc512vq7x5znblz3v"; depends=[mixtools qtl VGAM]; };
-phenology = derive { name="phenology"; version="4.2"; sha256="141k2rfjmrx0cfzzcdf3q67chxq1jqp524rxcpdq3m7bnbkv67k3"; depends=[coda fields HelpersMG shiny zoo]; };
+phenology = derive { name="phenology"; version="4.2.4"; sha256="1074sr1p3bjz4f2zsswp5m60qs7axp9ngsk1l76gi2zpv95xay6s"; depends=[coda fields HelpersMG shiny zoo]; };
 phia = derive { name="phia"; version="0.2-0"; sha256="1v2znss1snqrn3bpd0513jmw0x39p9vpwdc60klx725yrr2cfznw"; depends=[car Matrix]; };
 phmm = derive { name="phmm"; version="0.7-5"; sha256="0dil0ha199yh85j1skwfdl0v02vxdmb0xcc1jdbayjr5jrn9m1zk"; depends=[lattice Matrix survival]; };
-phom = derive { name="phom"; version="1.0.3"; sha256="0x05p6fn4kycilal65k7dy6h3w5i3ca9w93ryp4gqd4lp50l1749"; depends=[Rcpp]; };
 phonR = derive { name="phonR"; version="1.0-3"; sha256="09wzsq92jkxy6cd89czshpj1hsp56v9jbgqr5a06rm6bv3spa31i"; depends=[deldir plotrix splancs]; };
 phonTools = derive { name="phonTools"; version="0.2-2.0"; sha256="1wd1a5506p3ny6vi9pq6yg9gbz082fxw4l3cxsplkdpqgkhryrww"; depends=[]; };
 phreeqc = derive { name="phreeqc"; version="1.0-9102"; sha256="09vwqd4mf64l76vgg32vm9vkc8ra6cls9nvrp3ckkj9l2fwcnbzf"; depends=[]; };
@@ -5199,21 +5210,21 @@ phylin = derive { name="phylin"; version="1.0"; sha256="10pbs4adsyp43i89jb3xi0m5
 phyloTop = derive { name="phyloTop"; version="1.1.1"; sha256="046myyr01c4zc6sfy7r6p2vswkqqqd3w4k173gjbjazl1ims1sjs"; depends=[ape igraph NHPoisson phylobase]; };
 phylobase = derive { name="phylobase"; version="0.6.8"; sha256="0xj7x4cdfp0yadvjhdkw1ai3yd081ri4gpdg0n5g0z13cjaa6mjh"; depends=[ade4 ape Rcpp]; };
 phyloclim = derive { name="phyloclim"; version="0.9-4"; sha256="0ngg8x192lrhd75rr6qbh72pqijbrhrpizl27q0vr6hp7n9ch3zx"; depends=[ape raster]; };
-phylocurve = derive { name="phylocurve"; version="1.2.0"; sha256="13yv9q2p141gwvpr413v688iwx9ljf2x315gsc2rxx8q9bbj79dr"; depends=[abind ape drc dtw geiger GPfit phylolm phytools]; };
+phylocurve = derive { name="phylocurve"; version="1.3.0"; sha256="014y7l2q3yjzj2iq9a6aspnd7dkvjfwnz46rs7x6l45jy41494wb"; depends=[abind ape drc dtw geiger GPfit phylolm phytools]; };
 phyloland = derive { name="phyloland"; version="1.3"; sha256="10g40m6n2s4qvnzlqcwpy3k0j7bxdp79f586jj910b8p00ymrksp"; depends=[ape]; };
 phylolm = derive { name="phylolm"; version="2.2"; sha256="1x1mi1mcq3ijbqhr0951scqzv4zza0r3fcs0hh4gpbr8z49b6d98"; depends=[ape]; };
-phylosim = derive { name="phylosim"; version="2.1.1"; sha256="0rrz5c7zl2hjalwm6m8pydikiwmiq2dybx2yhzp0ps2bcsn02lhn"; depends=[ape compoisson ggplot2 R_methodsS3 R_oo]; };
 phylotools = derive { name="phylotools"; version="0.1.2"; sha256="19w7xzk6sk1g9br7vwv338nvszzh0lk5rdzf0khiywka31bbsjyb"; depends=[ape fields picante seqRFLP spaa]; };
 phyreg = derive { name="phyreg"; version="0.7"; sha256="0saynhq4yvd4x2xaljcsfmqk7da2jq3jqk26fm9qivg900z4kf35"; depends=[]; };
 physiology = derive { name="physiology"; version="0.2.2"; sha256="0z394smbnmlrnp9ms5vjczc3avrcn5nxm8np5y58k86x470w6npz"; depends=[]; };
 phytools = derive { name="phytools"; version="0.4-56"; sha256="18cib7yjlbzdpfs5piwx5cw0h7fk26s04wsb2vdfiybr306a9jk2"; depends=[animation ape clusterGeneration maps mnormt msm numDeriv phangorn plotrix scatterplot3d]; };
 phytotools = derive { name="phytotools"; version="1.0"; sha256="049znviv2vvzv23biy1l28axm7bc7biwmq4bnn0cnjqgkk48ysz3"; depends=[FME insol]; };
-pi0 = derive { name="pi0"; version="1.3-250"; sha256="1561zvf1hcd05iqy245c0z23mi8ypk6q3lkfldcr55cs67w4lmz6"; depends=[Iso kernlab limSolve LowRankQP Matrix numDeriv quadprog qvalue rgl scatterplot3d]; };
+pi0 = derive { name="pi0"; version="1.4-0"; sha256="0qwyfan21k23q4dilnl7hqjghzm8n2qfw21wbvnidr6n9hf2fjjs"; depends=[Iso kernlab limSolve LowRankQP Matrix numDeriv quadprog qvalue rgl scatterplot3d]; };
 picante = derive { name="picante"; version="1.6-2"; sha256="1zxpd8kh3ay6f3gdqkij1a6vnkr98dc1jib2r6br2kjyzshabcsd"; depends=[ape nlme vegan]; };
 picasso = derive { name="picasso"; version="0.3.0"; sha256="0z314akr1x2a28hh5hbb7mzkyaxsj4dfkdmx10l6gqllgk9j5qca"; depends=[igraph lattice MASS Matrix]; };
+pid = derive { name="pid"; version="0.13"; sha256="1cn8pc86xkb4dngashglfwlj7sjj4xaamfgglxkcsp0wxaiy9rfg"; depends=[ggplot2]; };
 pingr = derive { name="pingr"; version="1.1.0"; sha256="0j03qcsyckv3zh2v4m8wz8kyfl0k8qi71rm20rc0spy1s9ng7fcb"; depends=[]; };
 pipe_design = derive { name="pipe.design"; version="0.2"; sha256="1hmc4g3bnpwicjr53xz8yhhshnfhd2fqx9c6v4af8wvnqpy7mlpq"; depends=[ggplot2 gtools]; };
-pipeR = derive { name="pipeR"; version="0.6"; sha256="15hq6i1cv072jpw71slij534s85xljkjk2ygxpkgq3cyngbq3jxb"; depends=[]; };
+pipeR = derive { name="pipeR"; version="0.6.0.6"; sha256="1d7vmccvh5ir26cv26mk0ay69rqmwmp0mgwjal9avfn9vrxq1fq3"; depends=[]; };
 pitchRx = derive { name="pitchRx"; version="1.7"; sha256="0mx948bahw0zr0915hz9lcws7iq2l0ikgx4gjnnfhhpiii86xs57"; depends=[ggplot2 hexbin MASS mgcv plyr XML2R]; };
 pixmap = derive { name="pixmap"; version="0.4-11"; sha256="04klxp6jndw1bp6z40v20fbmdmdpfca2g0czmmmgbkark9s1183g"; depends=[]; };
 pkgKitten = derive { name="pkgKitten"; version="0.1.3"; sha256="1f7jkriib1f19mc5mdrymg5xzdcyclfvh1220agy4lpyprxgza0f"; depends=[]; };
@@ -5222,7 +5233,7 @@ pks = derive { name="pks"; version="0.3-1"; sha256="1nr36k960yv71yfxkzchjk814sf9
 plRasch = derive { name="plRasch"; version="1.0"; sha256="1rnpvxw6pzl5f6zp4xl2wfndgvqz5l3kiv9sh4cpvhga0gl8zjaw"; depends=[survival]; };
 plan = derive { name="plan"; version="0.4-2"; sha256="0vwiv8gcjdbnsxd8zqf0j1yh6gvbzm0b5kr7m47ha9z64d7wxch6"; depends=[]; };
 planar = derive { name="planar"; version="1.5.2"; sha256="1w843qk88x3kzi4q79d5ifzgp975dj4ih93g2g6fa6wh529j4w3h"; depends=[cubature dielectric plyr Rcpp RcppArmadillo reshape2 statmod]; };
-planor = derive { name="planor"; version="0.2-3"; sha256="1j550zqm3h4kz7jz4fkgp0z92skwpyxz0lnr7pfif4pya1mxd6f9"; depends=[conf_design]; };
+planor = derive { name="planor"; version="0.2-4"; sha256="0k5rhrnv2spsj2a94msgw03yyv0hzrf8kvlnbhfj1dl7sb1l92a1"; depends=[conf_design]; };
 plantecophys = derive { name="plantecophys"; version="0.6"; sha256="1gxc84njpii82p6n04djbp4n9wni49lxfvmljqz48r643hv48a7h"; depends=[]; };
 plaqr = derive { name="plaqr"; version="1.0"; sha256="1vv15zqnmir5hi9ivyifzrc1rkn1sn5qj61by66iczmlmhqh17h8"; depends=[quantreg]; };
 playwith = derive { name="playwith"; version="0.9-54"; sha256="1zmm8sskchim3ba3l0zqfvxnrqfmiv94a8l6slcf3if3cf9kkzal"; depends=[cairoDevice gridBase gWidgets gWidgetsRGtk2 lattice RGtk2]; };
@@ -5240,7 +5251,7 @@ plotKML = derive { name="plotKML"; version="0.5-2"; sha256="006f6j3k2yb20zcmx2lq
 plotMCMC = derive { name="plotMCMC"; version="2.0-0"; sha256="0i4kcx6cpqjd6i16w3i8s34siw44qigca2jbk98b9ligbi65qnqb"; depends=[coda gplots lattice]; };
 plotROC = derive { name="plotROC"; version="1.3.3"; sha256="090fpj3b5vp0r2zrn38yxiy205mk9kx1fpwp0g8rl4bsa88v4c9y"; depends=[ggplot2 gridSVG shiny]; };
 plotSEMM = derive { name="plotSEMM"; version="2.0"; sha256="0n30m1nz9fnilbgxg5jcmx2bsscdvz5mkjkyrgx7yr3alazkaimd"; depends=[MplusAutomation plotrix plyr Rcpp shiny]; };
-plotmo = derive { name="plotmo"; version="3.1.2"; sha256="13f821w1y7xr535yqykcr3mmrndrg47xk6cfqkyd1z2maw50n2hs"; depends=[plotrix TeachingDemos]; };
+plotmo = derive { name="plotmo"; version="3.1.3"; sha256="0jdam773azxi5pv2ix4gc0zl3xji0rdlb7v5m51z1j0l93z50mk6"; depends=[plotrix TeachingDemos]; };
 plotpc = derive { name="plotpc"; version="1.0.3"; sha256="0dw9k702a67c2k77dl4k2747lhsr84x41qrgj5mp9jnyfq6naciq"; depends=[]; };
 plotrix = derive { name="plotrix"; version="3.5-12"; sha256="13gffp7zp46wal83609652x48i63zb5i20x6ycmgc97l4nanhrfi"; depends=[]; };
 pls = derive { name="pls"; version="2.4-3"; sha256="114ka4766x8fx0zvvr7cylky1jsy542nj6s7sb2dwv8zjhbclkhn"; depends=[]; };
@@ -5256,6 +5267,7 @@ plumbr = derive { name="plumbr"; version="0.6.9"; sha256="1avbclblqfy57pd72ximvj
 plus = derive { name="plus"; version="1.0"; sha256="1l7lvnq7vahj8m7knmr4q3wj00ar7iq89j45a2dqn2bh0qyj68ls"; depends=[]; };
 plusser = derive { name="plusser"; version="0.4-0"; sha256="1g100dh8cvn9q09j0jbkw4xmwjdp1lm4651369975fm99nrlp1j9"; depends=[lubridate plyr RCurl RJSONIO]; };
 plyr = derive { name="plyr"; version="1.8.3"; sha256="06v4zxawpjz37rp2q2ii5q43g664z9s29j4ydn0cz3crn7lzl6pk"; depends=[Rcpp]; };
+pmc = derive { name="pmc"; version="1.0.0"; sha256="156kgjq8p9y02lp8rklq73wr7k7sm0wjihh2q6qziv4vgbqg157c"; depends=[dplyr geiger ggplot2 ouch tidyr]; };
 pmcgd = derive { name="pmcgd"; version="1.1"; sha256="1pybzvyjmzpcnxrjsas06diy3x83i1r5491s6ccyr63l56hs55d5"; depends=[mixture mnormt]; };
 pmclust = derive { name="pmclust"; version="0.1-6"; sha256="05zjx4psvk5zjmr0iwwwig990g6h04ajn5wi0xi8bqv046r47q3h"; depends=[MASS pbdMPI rlecuyer]; };
 pmg = derive { name="pmg"; version="0.9-43"; sha256="0i7d50m4w7p8ipyx2d3qmc54aiqvw0ls8igkk8s1xc7k8ympfqi6"; depends=[foreign gWidgets gWidgetsRGtk2 lattice MASS proto]; };
@@ -5263,6 +5275,7 @@ pmlr = derive { name="pmlr"; version="1.0"; sha256="1z3hbw4wabpai1q8kbn77nzxqzia
 pmml = derive { name="pmml"; version="1.4.2"; sha256="0588sph67zs58knf4g3fd7c84i2yag81igr882jgbaxhfhxrpk6n"; depends=[survival XML]; };
 pmmlTransformations = derive { name="pmmlTransformations"; version="1.2.2"; sha256="1p31lakhqwk0qhb565j2sjcfsjsx0i5v8kj8779ryjyvy7717m6m"; depends=[]; };
 pmr = derive { name="pmr"; version="1.2.5"; sha256="0dq97dfjmgxlhr3a2n20vyyzfmamcicw878hdxpw31lw02xs6yls"; depends=[]; };
+pnf = derive { name="pnf"; version="0.1.1"; sha256="0kasq27dnjwqzlzybc8m3wv9jwyag6z38ayv88msa7lxcnibr34i"; depends=[]; };
 png = derive { name="png"; version="0.1-7"; sha256="0g2mcp55lvvpx4kd3mn225mpbxqcq73wy5qx8b4lyf04iybgysg2"; depends=[]; };
 pnmtrem = derive { name="pnmtrem"; version="1.3"; sha256="0053gg368sdpcw2qzydpq0c5v2cxdlwgf5k68cbw0yx41csjgvz0"; depends=[MASS]; };
 pnn = derive { name="pnn"; version="1.0.1"; sha256="1s6ib60sbdas4720hrsr5lsszsa474kfblqcalsb56c84gkl42ka"; depends=[]; };
@@ -5277,13 +5290,13 @@ poisDoubleSamp = derive { name="poisDoubleSamp"; version="1.1"; sha256="13wyj9jf
 poisson_glm_mix = derive { name="poisson.glm.mix"; version="1.2"; sha256="0328m279jfa1fasi9ha304k4wcybzr7hldww7wn0cl7anfxykbv8"; depends=[]; };
 poistweedie = derive { name="poistweedie"; version="1.0"; sha256="18992fafypds3qsb52c09fasm3hzlyh5zya6cw32wnhipmda643m"; depends=[]; };
 polidata = derive { name="polidata"; version="0.1.0"; sha256="07641v0dnn161kyxx7viplkf8c3r51hd4hd5pzmcph4y4387r01i"; depends=[jsonlite RCurl]; };
-pollstR = derive { name="pollstR"; version="1.2.0"; sha256="1a1qjblxylzpwb1qpy2yyk39022isp8aajds5glspxndapmd4akb"; depends=[httr jsonlite plyr]; };
-polspline = derive { name="polspline"; version="1.1.9"; sha256="1n08dhwpf53slk1zib491kii54x9h16g3jgr2kxxpyc5xfv4yj26"; depends=[]; };
+pollstR = derive { name="pollstR"; version="1.2.1"; sha256="0sny330a0d8jicsgyc1qa2mwhxgxng50w2fv3ml1nncml8b88k40"; depends=[httr jsonlite plyr]; };
+polspline = derive { name="polspline"; version="1.1.11"; sha256="000b8mb7q5614pxrrfkbwyl39lqj3rbf13ghgkn0234v9y2i6j76"; depends=[]; };
 polyCub = derive { name="polyCub"; version="0.5-2"; sha256="1j28ia53za3sh9q7q1g5bnmlb5mbzf44bcwzv0919lvkw01f2lvj"; depends=[sp spatstat]; };
 polySegratio = derive { name="polySegratio"; version="0.2-4"; sha256="05kvj475zhlrmp7rm691cfs28igp4ac2cn2xxf7axx09v1nq33db"; depends=[gdata]; };
 polySegratioMM = derive { name="polySegratioMM"; version="0.6-3"; sha256="1y4kzb1p3aw7ng8mv1hszpvb5hwwxy4vg34mhhk705ki4jy8jgvp"; depends=[coda gtools lattice polySegratio]; };
 polyaAeppli = derive { name="polyaAeppli"; version="2.0"; sha256="0kyz3ap92xz7aqyviyrpggfmicy1gybrx7y19djsmixcwz53zqch"; depends=[]; };
-polyapost = derive { name="polyapost"; version="1.1-6"; sha256="1wk85nl2p9plnaavjdr4bqxxhjc84ynv53bh2v1rmq87jymw40b1"; depends=[boot]; };
+polyapost = derive { name="polyapost"; version="1.4-2"; sha256="0nr8mw0k79kz5zd1k81kz0i940vmlzqqscn1z1yaik0rx8i7mhs7"; depends=[boot rcdd]; };
 polyclip = derive { name="polyclip"; version="1.3-2"; sha256="0gsckb5nwfq1w48g67pszk3ndzvj63r8rp7vhh77idizaczkv0r1"; depends=[]; };
 polycor = derive { name="polycor"; version="0.7-8"; sha256="0hvww5grl68dff23069smfk3isysyi5n2jm4qmaynrk0m3yvhxwn"; depends=[mvtnorm sfsmisc]; };
 polynom = derive { name="polynom"; version="1.3-8"; sha256="05lng88c8cwj65cav31hsrca9nbrqn5rmcz79b17issyk2j0g86p"; depends=[]; };
@@ -5292,7 +5305,7 @@ polytomous = derive { name="polytomous"; version="0.1.6"; sha256="137qcnncih1lm2
 polywog = derive { name="polywog"; version="0.4-0"; sha256="0wl9br0g4kgi3nz2fq28nsk6fw0ll0y715v4vz8lv3pvfwc7518j"; depends=[foreach Formula glmnet iterators Matrix miscTools ncvreg Rcpp stringr]; };
 pom = derive { name="pom"; version="1.1"; sha256="02jv19apn0kmp1ric2cxajlaad2fmsz4nm4izd2c3691vzas7l83"; depends=[matrixcalc]; };
 pomp = derive { name="pomp"; version="0.65-1"; sha256="1fxfbqa6lb4x0d4h29in8crhac32aw71chyjyvnhadfqynxhhv4k"; depends=[coda deSolve mvtnorm nloptr subplex]; };
-pooh = derive { name="pooh"; version="0.3"; sha256="1wcv77vjjp62c5l1mplnkk4vhy2scjrq96cjx58w5jdj46lban2h"; depends=[]; };
+pooh = derive { name="pooh"; version="0.3-1"; sha256="0fn711jyn18byfc2nq3y154k8rb39vpnfw1a0xw73pqp1cwd2i73"; depends=[]; };
 popKorn = derive { name="popKorn"; version="0.3-0"; sha256="1zcl6ms7ghbcjyjgfg35h37ma8nspg15rk2ik82yalqlzxjf7kxw"; depends=[boot]; };
 popRange = derive { name="popRange"; version="1.1.3"; sha256="0kkz6va0p8zv3skaqqcpw42014d9x9x4ilx0czz91qf46h61jgb0"; depends=[findpython]; };
 popReconstruct = derive { name="popReconstruct"; version="1.0-4"; sha256="14lp0hfnzbiw81fnq7gzpr4lxyfh3g0428rm9jwjh631irz3fcc9"; depends=[coda]; };
@@ -5301,21 +5314,21 @@ popdemo = derive { name="popdemo"; version="0.1-4"; sha256="0syhmm8fnxbsdzj75y7d
 popgen = derive { name="popgen"; version="1.0-3"; sha256="00rgfwmmiharfxqlpy21n3jbxwr5whzdg8psqylkjf83ls2myqzm"; depends=[cluster]; };
 popgraph = derive { name="popgraph"; version="1.4"; sha256="1z6w6vj3vl2w10hvzwmkw4d475bqcd6ys92xnn445ag6vpq0cvxq"; depends=[ggplot2 igraph MASS Matrix sampling sp]; };
 poplite = derive { name="poplite"; version="0.99.16"; sha256="0yp1hfda2k6c5x0gbcfxj9h6igzx3ra05xs7g88wjz76yxp3wb6w"; depends=[DBI dplyr igraph lazyeval RSQLite]; };
-poppr = derive { name="poppr"; version="1.1.5"; sha256="0whk06gwm171b5j2vcfqi7rdwczv109g7bw2gfnzhz4fm46nhmfk"; depends=[ade4 adegenet ape ggplot2 igraph pegas phangorn reshape2 vegan]; };
+poppr = derive { name="poppr"; version="2.0.0"; sha256="1n3vdrfcwfjrxa9fff39g59kdyxs3lhykg24vppy4ngjv2yhph3y"; depends=[ade4 adegenet ape boot dplyr ggplot2 igraph pegas phangorn reshape2 shiny vegan]; };
 popsom = derive { name="popsom"; version="2.3"; sha256="0hdg1nx8mlpqw9aj2q08sb20frsc5jnbvqpfalf5kyvlygnhxdlc"; depends=[fields som]; };
 portes = derive { name="portes"; version="2.1-3"; sha256="0nqh6aync5igmvg7nr5inkv2cwgzd0zi6ky0vvrc3abchqsjm2ck"; depends=[]; };
 portfolio = derive { name="portfolio"; version="0.4-7"; sha256="0gs1a4qh68xsvl7yi6mz67lamwlqyqjbljpyax795piv46kkm06p"; depends=[lattice nlme]; };
 portfolioSim = derive { name="portfolioSim"; version="0.2-7"; sha256="1vf46882ys06ia6gfiibxx1b1g81xrg0zzman9hvsj4iky3pwbar"; depends=[lattice portfolio]; };
-potts = derive { name="potts"; version="0.5-3"; sha256="1pddz8d4p69wzr51zy3bnbwka1a2dr7civh72qi0rpdsrfm4jxl6"; depends=[]; };
+potts = derive { name="potts"; version="0.5-4"; sha256="1818md2mdkf47r5vcqawnn84lanir9q6r72kf41lq4zbjkk2yazv"; depends=[]; };
 poweRlaw = derive { name="poweRlaw"; version="0.30.2"; sha256="1b4ngqsh5gywksb3y9cj1yjkhxs4081svwgxwf8gpsa7fnl9c0fl"; depends=[VGAM]; };
 powell = derive { name="powell"; version="1.0-0"; sha256="160i4ki3ymvq08szaxshqlz7w063493j5zqvnw6cgjmxs7y0vj8y"; depends=[]; };
 powerAnalysis = derive { name="powerAnalysis"; version="0.2"; sha256="15ff3wnn37sjkiyycgh16g7gwl3l321fbw12kv621dad5bki14jl"; depends=[]; };
-powerGWASinteraction = derive { name="powerGWASinteraction"; version="1.1.1"; sha256="0xwyqlblhdnnv6pd2jpmz11s95zg7ylh1wa2q03zj8df330jcl70"; depends=[mvtnorm pwr]; };
+powerGWASinteraction = derive { name="powerGWASinteraction"; version="1.1.3"; sha256="1i8gfsk9qzx54yn661i4x9k7n7b6r1jd808wv1hcq7870mzyb27k"; depends=[mvtnorm pwr]; };
 powerMediation = derive { name="powerMediation"; version="0.2.4"; sha256="1b4hzai52fb0kk04az3rdbfk2vldfkhsa4gx7g98lbsvw4gh9imb"; depends=[]; };
 powerSurvEpi = derive { name="powerSurvEpi"; version="0.0.6"; sha256="1jsbrj35m296mkk47zcpb2haain6bf23k0xzphnb4sq8f06cmq1p"; depends=[survival]; };
 powerpkg = derive { name="powerpkg"; version="1.5"; sha256="0mbk2fda2fvyp1h5lk5b1fg398xybbjv0z6kdx7w7xj345misf7l"; depends=[]; };
 ppcor = derive { name="ppcor"; version="1.0"; sha256="18l5adjysack86ws61xh89z5xfr83v932a0pn6ad8i8py3nd85fj"; depends=[]; };
-ppiPre = derive { name="ppiPre"; version="1.7"; sha256="12my8xqb3zbiji6z6ip079gh8rkfi700pbbj1acrnrcflxz2wqzx"; depends=[AnnotationDbi e1071 GOSemSim igraph]; };
+ppiPre = derive { name="ppiPre"; version="1.8"; sha256="030jgpm91vjrjas93avxfvs0hrvdzw79p6ghfn81lakc06jjv5j8"; depends=[AnnotationDbi e1071 GOSemSim igraph]; };
 ppls = derive { name="ppls"; version="1.6-1"; sha256="1r3h4pf79bkzpqdvyg33nwjabsqfv7r8a4ziq2zwx5vvm7mdy7pd"; depends=[MASS]; };
 ppmlasso = derive { name="ppmlasso"; version="1.1"; sha256="1w13p1wjl1csds1xfc79m44rlym9id9gwnp3q0bzw05f35zbfryg"; depends=[spatstat]; };
 pps = derive { name="pps"; version="0.94"; sha256="0sirxpagqc2ghc01zc6q4dk691six9wkgknfbwaqxbxvda3hcmyq"; depends=[]; };
@@ -5326,9 +5339,8 @@ pracma = derive { name="pracma"; version="1.8.3"; sha256="06711w5451gb22667i5dx2
 pragma = derive { name="pragma"; version="0.1.3"; sha256="1n30a346pph4d8cj4p4qx2l6fnwhkxa8yxdisx47pix376ljpjfx"; depends=[]; };
 prais = derive { name="prais"; version="0.1.1"; sha256="0vv6h12gsbipi0gnq0w6xh6qvnvc0ydn341g1gnn3zc2n7cx8zcn"; depends=[]; };
 praktikum = derive { name="praktikum"; version="0.1"; sha256="0kkydgglvqw371fxh46fi86fmdndhwq1n8qj0ynbh2gz1cn86aw1"; depends=[]; };
-prc = derive { name="prc"; version="2014.11-4"; sha256="0r4c0s80fdzc9ifbfy8aaqi7164blqgiv3vbzp9x70c4dfl3lwxx"; depends=[kyotil nlme]; };
+prc = derive { name="prc"; version="2015.6-24"; sha256="0sf664zqcq6xylhd7rvm2l2xj3f4j6llaj7j4b4847wfxnas2j02"; depends=[kyotil nlme]; };
 precintcon = derive { name="precintcon"; version="2.1"; sha256="0cadia7d2pzhnfw00m4k6qgnajv61hj879pafqnnfs6synbp3px6"; depends=[ggplot2 scales]; };
-predfinitepop = derive { name="predfinitepop"; version="1.0"; sha256="1x5ri1kvd1rd9bjp2ygqwl68yp6hyb6aly22bs5kdwv2vn9nlq9w"; depends=[]; };
 predictmeans = derive { name="predictmeans"; version="0.99"; sha256="1qfqh21d3m0k2491hv5rl5k4v49j5089xsdk3bxicp30l512rax0"; depends=[ggplot2 lattice lme4 nlme pbkrtest plyr]; };
 predmixcor = derive { name="predmixcor"; version="1.1-1"; sha256="0v99as0dzn0lqnbbzycq9j885rgsa1cy4qgbya37bbjd01b3pykd"; depends=[]; };
 prefmod = derive { name="prefmod"; version="0.8-32"; sha256="0v5r195gzbfi6jbqz8r1x2fzj3anqxf4hxaxb9krm9rkwgphrwpi"; depends=[colorspace gnm]; };
@@ -5342,6 +5354,7 @@ prevalence = derive { name="prevalence"; version="0.4.0"; sha256="0vnmglxj1p66sg
 prim = derive { name="prim"; version="1.0.15"; sha256="008a8fm4as5b6j70xxwiipywhbg1wmdbgjz9r7qfnivcpfarxv7f"; depends=[misc3d rgl]; };
 primer = derive { name="primer"; version="1.0"; sha256="0vkq794a9qmz9klgzz7xz35msnmhdaq3f91lcix762wlchz6v7sg"; depends=[deSolve lattice]; };
 primerTree = derive { name="primerTree"; version="1.0.1"; sha256="068j5a2rh8f1h1y7rv2xacnvkn2darzvp1adhi3hqkmwsb3znhjk"; depends=[ape directlabels foreach ggplot2 gridExtra httr lubridate plyr scales stringr XML]; };
+primes = derive { name="primes"; version="0.1.0"; sha256="0hhkgpkadvai9xcivfalsvr5w0irsxygyz3p2zngwl3g5rvvh5g9"; depends=[Rcpp]; };
 princurve = derive { name="princurve"; version="1.1-12"; sha256="19fprwpfhgv6n6ann978ilwhh58qi443q25z01qzxml4b5jzsd7w"; depends=[]; };
 prinsimp = derive { name="prinsimp"; version="0.8-8"; sha256="074a27ml0x0m23hlznv6qz6wvfqkv08qxh3v1sbkl9nxrc7ak4vn"; depends=[]; };
 prob = derive { name="prob"; version="0.9-5"; sha256="05skjqimzhnk99z864466dc8qx58pavrky320il91yqyr8b98j8b"; depends=[combinat fAsianOptions hypergeo VGAM]; };
@@ -5357,6 +5370,7 @@ proftools = derive { name="proftools"; version="0.1-0"; sha256="1wzkrz7zr2pjw5id
 prognosticROC = derive { name="prognosticROC"; version="0.7"; sha256="0lscsyll41hpfzihdavygdzqw9xxjp48dmy4i17qsx5h01jl1h4i"; depends=[survival]; };
 progress = derive { name="progress"; version="1.0.2"; sha256="1dpcfvdg1rf0fd4whcn7k09x70s7jhz8p7nqkm9p13b4nhil76sj"; depends=[prettyunits R6]; };
 proj4 = derive { name="proj4"; version="1.0-8"; sha256="06r3lavgixrsa52d1v31laqcbw6fb9xn23akv39hvaib78diglv9"; depends=[]; };
+prop_comb_RR = derive { name="prop.comb.RR"; version="1.0"; sha256="01l8gr4qv8w9k3c885j1k93pzyifqcrv9bcgjpxa2m9z4qvl9k6c"; depends=[rootSolve]; };
 propOverlap = derive { name="propOverlap"; version="1.0"; sha256="0q72z9vbkpll4i3wy3fq06rz97in2cm3jjnvl6p9w8qc44zjlcyl"; depends=[Biobase]; };
 propagate = derive { name="propagate"; version="1.0-4"; sha256="18vyh4i4zlsmggfyd4w0zrznk75m84k08p1qa9crind04n5581j1"; depends=[ff MASS minpack_lm Rcpp tmvtnorm]; };
 prospectr = derive { name="prospectr"; version="0.1.3"; sha256="18lh03xg6bgzsdsl56bjd63xdp16sqgr3s326sgifkkak8ffbv7q"; depends=[foreach iterators Rcpp RcppArmadillo]; };
@@ -5369,22 +5383,23 @@ protoclass = derive { name="protoclass"; version="1.0"; sha256="17d2m6r1shgb47v8
 protoclust = derive { name="protoclust"; version="1.5"; sha256="03qhqfqdz45s8c1p8c6sqs10i6c2ilx4fz8wkpwas3j78lgylskg"; depends=[]; };
 protr = derive { name="protr"; version="0.5-1"; sha256="1ji0vpy9rrrvbsfwi4823ywi5zbwl57zw1glxllxgwyv9l6v4bpb"; depends=[]; };
 provenance = derive { name="provenance"; version="0.2"; sha256="07wgfb5hmdd4nddl42wpqsx9vzayvngrgmcsssilbm5qbrvgv4sr"; depends=[MASS shapes smacof vegan]; };
-proxy = derive { name="proxy"; version="0.4-14"; sha256="1ijip1jmpm7dg11yv2rjcpkpg4p30m9acddbn49fbss9kcpl5b5i"; depends=[]; };
-pryr = derive { name="pryr"; version="0.1.1"; sha256="00j81iwf2mka1a953nrgar0r4wcfi4n5nl8pidnhw51lyh2285d8"; depends=[codetools Rcpp stringr]; };
+proxy = derive { name="proxy"; version="0.4-15"; sha256="17qnrihxyyyj0lx6hka4mwkgy764ha4jx00a822xjnnbygk81iqv"; depends=[]; };
+pryr = derive { name="pryr"; version="0.1.2"; sha256="1in350a8hxwf580afavasvn3jc7x2p1b7nlwmj1scakfz74vghk5"; depends=[codetools Rcpp stringr]; };
 psData = derive { name="psData"; version="0.1.2"; sha256="0w8kzivqrh1b6gq803rfd10drxdwgy0cxb5sff273m6jxzak52f2"; depends=[countrycode DataCombine foreign xlsx]; };
 psbcGroup = derive { name="psbcGroup"; version="1.1"; sha256="17kpxddvy9m87i9r1hazc8g6mm35p1452ngz80byhgw9p0jkvn5p"; depends=[LearnBayes mvtnorm SuppDists]; };
 pscl = derive { name="pscl"; version="1.4.9"; sha256="15fij6n43hry1plgzrak9vmk9xbb7n4v2frv997bhwxbs6jhhfhf"; depends=[lattice MASS]; };
+pscore = derive { name="pscore"; version="0.1-2"; sha256="1sfkxs2kv8lq87j3q9ci7j38c7gzfkp2l36lwcdhiidr2nls2x0c"; depends=[ggplot2 lavaan reshape2]; };
 psd = derive { name="psd"; version="1.0-1"; sha256="1ssda4g98m0bk6gkrb7c6ylfsd2a84fq4yhp472n4k8wd73mkdn6"; depends=[RColorBrewer Rcpp RcppArmadillo signal zoo]; };
-pse = derive { name="pse"; version="0.4.0"; sha256="1ln6b5ch99fmmcsfn8m8fl4ir7cadwq5ckggwizw9cbllw3drv0b"; depends=[boot Hmisc]; };
+pse = derive { name="pse"; version="0.4.2"; sha256="063l4lck7c2ils0klf3pk3vkqhmskhz0m537fnjhwzd7c85wdv4x"; depends=[boot Hmisc]; };
 pseudo = derive { name="pseudo"; version="1.1"; sha256="0dcx6b892cic47rwzazsbnsicpgyrbdcndr3q5s6z0j1b41lzknd"; depends=[geepack KMsurv]; };
 psgp = derive { name="psgp"; version="0.3-6"; sha256="0h9gyadfy0djj32pgwhg8vy2gfn7i7yj5nnsm6pvfypc3k71s2wf"; depends=[automap gstat intamap Rcpp RcppArmadillo]; };
 psidR = derive { name="psidR"; version="1.3"; sha256="1jdxbjvc309b1bs81v57kc1g7lgfdz84bfakh9qwh8wgjqbjr06i"; depends=[data_table foreign RCurl SAScii]; };
 pso = derive { name="pso"; version="1.0.3"; sha256="0alar695c6kc1rsvwipsrvlxc93f3sy9l0yhp0mggyqgxkkvy406"; depends=[]; };
 pspearman = derive { name="pspearman"; version="0.3-0"; sha256="1l5mqga7b5nvm6v9gbl1xsspdqsjqyhhdn4gc4qlz6ld7fqfq6cx"; depends=[]; };
-pspline = derive { name="pspline"; version="1.0-16"; sha256="170apwfv2lbf2rggzzynrf9vi2mr0y15sm4zy8djxxpzv217iaf7"; depends=[]; };
+pspline = derive { name="pspline"; version="1.0-17"; sha256="1n3mhj6q7a1v2k8xkbwji27dihcy3845wp50sx14hy4nbay5kf1r"; depends=[]; };
 pssm = derive { name="pssm"; version="1.0"; sha256="1af5zvznh04vz5psbmq3xxclm2zh4gl4gxi1ps6aqmiqjpm57dwq"; depends=[abind MASS MHadaptive numDeriv]; };
 psy = derive { name="psy"; version="1.1"; sha256="027whr670w65pf8f7x0vfk9wmadl6nn2idyi6z971069lf01wdlk"; depends=[]; };
-psych = derive { name="psych"; version="1.5.4"; sha256="04n0rfr7i5yhr5ph0fdp9yrmc8m2i4zbf7bh5pvx7s7lfs08z84a"; depends=[mnormt]; };
+psych = derive { name="psych"; version="1.5.6"; sha256="17h0dmkycsz7m11g59j7cfihp28m55lq1nxycprafm5gz9bjnsbv"; depends=[mnormt]; };
 psychometric = derive { name="psychometric"; version="2.2"; sha256="1b7cx6icixh8k3bv60fqxjjks23qn09vlcimqfv2x3m3nkf8p1s9"; depends=[multilevel nlme]; };
 psychomix = derive { name="psychomix"; version="1.1-2"; sha256="0kah36ps9d0dr594vfk9fy2ag2grknjjgvmkf9vzm0ny52cisc72"; depends=[flexmix Formula lattice modeltools psychotools]; };
 psychotools = derive { name="psychotools"; version="0.4-0"; sha256="17qwlxj00i0aqwf39hwr6mmxa6jy0j6dxfrp9p1xskbgi5cnvslk"; depends=[]; };
@@ -5393,8 +5408,8 @@ psyphy = derive { name="psyphy"; version="0.1-9"; sha256="1ndc6sy662wj2qfx7r97cr
 psytabs = derive { name="psytabs"; version="0.5"; sha256="0jcsv771ndf0fv76982rbv099ii4l55a8bj1mhgr54838ins0gg7"; depends=[lavaan mokken plyr psych R2HTML rtf semTools]; };
 pt = derive { name="pt"; version="1.0"; sha256="0hjijfmc9dip3ys8xg44w0fwvyzyjyjl9hpwm7j2nzg3plv6i1fz"; depends=[]; };
 ptinpoly = derive { name="ptinpoly"; version="2.4"; sha256="1jbj8z7lqg7w1mqdh230qjaydx2yb6ffgkc39k7dx8xl30g00i5b"; depends=[misc3d]; };
-ptw = derive { name="ptw"; version="1.0-7"; sha256="195pa6hj3y9spyc7yxfgr8alkp48a7ccnyp64r6fyjwj6ds08b64"; depends=[]; };
-pubmed_mineR = derive { name="pubmed.mineR"; version="1.0.3.1"; sha256="1q1y3sshv5c56qgbbrrlnb1nhg052n8g2vrx32vhg304rqircxkm"; depends=[boot R2HTML RCurl XML]; };
+ptw = derive { name="ptw"; version="1.9-10"; sha256="0p73bn5qnhbjfjvhqpmwbccw0wkk0yxy5m5svy1kly5y8grylhyx"; depends=[nloptr]; };
+pubmed_mineR = derive { name="pubmed.mineR"; version="1.0.4"; sha256="044xc8yjk2qm4ppvk666ddk6kfznif6jwb49yrypxvg61ffg2s3j"; depends=[boot R2HTML RCurl XML]; };
 pullword = derive { name="pullword"; version="0.1"; sha256="1mxv63q2nfnhxcn8m17d40w792l1i7diykg6h0i42pj0rsa4ww36"; depends=[RCurl]; };
 pumilioR = derive { name="pumilioR"; version="1.3"; sha256="1zmcdp978p73bh9fdshxlrzgfg18j007xgxgr439rq90bwiwva6j"; depends=[RCurl XML]; };
 pushoverr = derive { name="pushoverr"; version="0.1.4"; sha256="1qa7cajgri3dwlvbpwn244m92n3q3apl4m5420mzsa9ngnmm8hj1"; depends=[httr]; };
@@ -5405,7 +5420,7 @@ pvrank = derive { name="pvrank"; version="1.0"; sha256="0kvy0b1x7q23pjw2ckyqzyh3
 pvsR = derive { name="pvsR"; version="0.3"; sha256="1ijmqlcsc8z0aphdd3j37ci8yqsy50wnr2fwn7h8fxbyd12ax2nj"; depends=[httr nnet XML]; };
 pwr = derive { name="pwr"; version="1.1-2"; sha256="1czganj70qszz32yx2jprhr8h9a2lpg67gwfwfjf8kpk97qvkalj"; depends=[]; };
 pwt = derive { name="pwt"; version="7.1-1"; sha256="0926viwmwldmzlzbnjfijh00wrhgb0h4h0mlrls71pi5pjfldifa"; depends=[]; };
-pwt8 = derive { name="pwt8"; version="8.0-0"; sha256="12cgyban6waj0cxz9gb35s5v0v29rmx67ipzalzdnrjp5nsmy431"; depends=[]; };
+pwt8 = derive { name="pwt8"; version="8.1-0"; sha256="0jvskkn3c4m2lfxm9ivm8g96kcd7ynlmjpjqbrd6sqivas0z46r2"; depends=[]; };
 pxR = derive { name="pxR"; version="0.40.0"; sha256="08s62kzdgak7mjzyhd32qn93q5l7sj01vhsk7fjg9nxjvm78xxka"; depends=[plyr reshape2 RJSONIO stringr]; };
 pxweb = derive { name="pxweb"; version="0.5.54"; sha256="17vg480b54mcv9jbkci1rrn6zi90zzw098xzrcw3kvp583as9mar"; depends=[data_table httr plyr RJSONIO stringr]; };
 pycno = derive { name="pycno"; version="1.2"; sha256="0ha5css95xb98dq6qk98gnp1al32gy6w5fkz74255vs4hmkwfzw2"; depends=[maptools rgeos sp]; };
@@ -5417,17 +5432,16 @@ qat = derive { name="qat"; version="0.73"; sha256="1fff4sv1n3i0gfgj83sy4pygxalif
 qcc = derive { name="qcc"; version="2.6"; sha256="0bsdgpsqvkz2w1qanxwx8kvrpkpzs9jgw8ml2lyqhmhqbxyg125r"; depends=[MASS]; };
 qclust = derive { name="qclust"; version="1.0"; sha256="0cxkk4lybpawyqmy5j6kkpgm0zy0gyn3brc1mf9jv8gmkl941cp3"; depends=[mclust mvtnorm]; };
 qcr = derive { name="qcr"; version="0.1-18"; sha256="16dfda3rwivsdhp7j5izzbk2rzwfabfmxgpq4kjc4h7r90n2vly2"; depends=[qcc]; };
-qdap = derive { name="qdap"; version="2.2.1"; sha256="0gix6l0h6q0c2pl38d3qp3pzs1m3j96rcb9n6q9k1nh0002vfnsg"; depends=[chron dplyr gdata gender ggplot2 gridExtra igraph NLP openNLP plotrix qdapDictionaries qdapRegex qdapTools RColorBrewer RCurl reports reshape2 scales stringdist tidyr tm venneuler wordcloud xlsx XML]; };
+qdap = derive { name="qdap"; version="2.2.2"; sha256="06y4a35ki7cml5sgr5q8cc8wh6rwv4xcrd7rki18ykyjhq4y4gc6"; depends=[chron dplyr gdata gender ggplot2 gridExtra igraph NLP openNLP plotrix qdapDictionaries qdapRegex qdapTools RColorBrewer RCurl reports reshape2 scales stringdist tidyr tm venneuler wordcloud xlsx XML]; };
 qdapDictionaries = derive { name="qdapDictionaries"; version="1.0.6"; sha256="1icivvsi33494ycd7vfqm9zx2g2rc1m3dygs3bi0ndi798z1cvx2"; depends=[]; };
 qdapRegex = derive { name="qdapRegex"; version="0.3.2"; sha256="1hygkck4wilm2f2cg5q82a867608j3dqp7wqj3kbnh5a970lw41y"; depends=[stringi]; };
 qdapTools = derive { name="qdapTools"; version="1.1.0"; sha256="0k3mvcjj2fg2v3z8jm2z02zmrpgjpwbpcaanmp2vlykqzacsrl52"; depends=[chron data_table RCurl XML]; };
 qdm = derive { name="qdm"; version="0.1-0"; sha256="0cfxyy8s5zfb7867f9xv9scq9blq2qnw68x66m7y7nqlrrff5xdr"; depends=[]; };
 qgraph = derive { name="qgraph"; version="1.3.1"; sha256="1wmpsgmzl9qg4vjjjlbxqav3ck7p26gidsqv3qryx56jx54164wg"; depends=[colorspace corpcor d3Network ellipse fdrtool ggm ggplot2 glasso gtools Hmisc huge igraph jpeg lavaan Matrix plyr png psych reshape2 sem sna]; };
 qgtools = derive { name="qgtools"; version="1.0"; sha256="0irqfaj2qqx7n1jfc0kmfpgzqrhwwlj0qizsmya94zk9d27bcpn5"; depends=[MASS Matrix]; };
-qicharts = derive { name="qicharts"; version="0.1.3"; sha256="1f9flcz4w5s6rahk2bkddwjwba72q8himgaqdgza8phaksdzm58v"; depends=[lattice latticeExtra]; };
+qicharts = derive { name="qicharts"; version="0.2.0"; sha256="0dinkcaz3dgi4r8nxzy57czi7b0192c4b9y5wbiqqf1l7b1zjqlp"; depends=[lattice latticeExtra]; };
 qiimer = derive { name="qiimer"; version="0.9.2"; sha256="08625hz2n7yk9zk1k9sa46n2ggbw5qs0mlqkmzyjjh3qlnb1354a"; depends=[pheatmap]; };
 qlcMatrix = derive { name="qlcMatrix"; version="0.9.4"; sha256="1nkk712h9nnaqshw766mvk72w6gq9abyry4q1a0ghn0naq3gyl0s"; depends=[Matrix slam]; };
-qlspack = derive { name="qlspack"; version="2.2"; sha256="0b9sqvnvldhd8vymajrbql0vn70rml13jgsq5ihm6skzq5qms7y6"; depends=[geepack]; };
 qmap = derive { name="qmap"; version="1.0-3"; sha256="1c7qvmd5whi446nzssqvhz1j2mpx22nlzzdrcql84v18ry0dr18m"; depends=[fitdistrplus]; };
 qmethod = derive { name="qmethod"; version="1.3.1"; sha256="01yj8fr6d615lydb7111lb9qhkg1c6xy8gp2225as53mzbsc890i"; depends=[digest GPArotation knitr psych xtable]; };
 qmrparser = derive { name="qmrparser"; version="0.1.5"; sha256="0sl9n42j0dx9jqz5vv029ra6dyrg9v7mvdlya8ps3vyd6fjhwh0z"; depends=[]; };
@@ -5462,7 +5476,7 @@ quantification = derive { name="quantification"; version="0.1.0"; sha256="098738
 quantmod = derive { name="quantmod"; version="0.4-4"; sha256="0a8gr2qb2b2w58zyxbyz3dbprmyiwf5cd62xqv4d3rk29l7vk4n8"; depends=[TTR xts zoo]; };
 quantreg = derive { name="quantreg"; version="5.11"; sha256="0pyc1zknkjyvaix76bn84l90zavajsc7jx17x0zanllnh34siizp"; depends=[SparseM]; };
 quantregForest = derive { name="quantregForest"; version="1.0"; sha256="11mnb32vz6m2g7nggip2y251rkwn6wr7jwdh0hqvl0pgalmipb84"; depends=[randomForest]; };
-quantregGrowth = derive { name="quantregGrowth"; version="0.3-0"; sha256="0iyqd4gf780xqj2gcinlx0h6r6wy4vc7sp8r4qa1s638qcrp3qwa"; depends=[quantreg]; };
+quantregGrowth = derive { name="quantregGrowth"; version="0.3-1"; sha256="0cm4ac9rn5vhqhi7f5qiilym1vp7x6bglwghw22b70nf9zvcap9h"; depends=[quantreg]; };
 quantspec = derive { name="quantspec"; version="1.0-3"; sha256="1g4arhhybw021dnz0imdfwwj328gc8yw75cgnnd00skdc402cfhk"; depends=[abind quantreg Rcpp snowfall zoo]; };
 questionr = derive { name="questionr"; version="0.4.3"; sha256="13mmmjxg9vkn53dp9hng330bkilzdf2zqisgs21ng08b6p9dv7n4"; depends=[classInt highr htmltools shiny]; };
 queueing = derive { name="queueing"; version="0.2.5"; sha256="11a44aqq0s50vdbn7rhijajqw1rrcj1qnyjjd8dn1cc5nvq141k7"; depends=[]; };
@@ -5479,17 +5493,17 @@ r4ss = derive { name="r4ss"; version="1.22.1"; sha256="1rjnglwa3i8rlzyqqr5h8yh7v
 rARPACK = derive { name="rARPACK"; version="0.7-0"; sha256="1r1ypa56wkxvll9yqr50f3x2krimi22lwyrkksf5zf6laksmiq1w"; depends=[Matrix Rcpp RcppEigen]; };
 rAltmetric = derive { name="rAltmetric"; version="0.6"; sha256="0ym8p9rq64ig3vlaimk38rmc2h1315bphx7v1rd6g4gypgx4ym15"; depends=[ggplot2 plyr png RCurl reshape2 RJSONIO]; };
 rAverage = derive { name="rAverage"; version="0.4-13"; sha256="0yfy81p99a3cb31cagxdvby7l2hcc60g3mnfizd9nvgamdmw08sy"; depends=[]; };
-rAvis = derive { name="rAvis"; version="0.1.2"; sha256="0m5dl8as0vmmsd3j0z0xwcpq55yfax42fa67qn4lsnaglyqmd4lm"; depends=[gdata maptools raster RCurl rgdal scales scrapeR sp stringr XML]; };
+rAvis = derive { name="rAvis"; version="0.1.4"; sha256="0svplnrn8rrr59v04nr1pz7d5r4dr1kdl0bd3kg8c3azxv47mxbp"; depends=[gdata maptools raster RCurl rgdal scales scrapeR sp stringr XML]; };
 rBeta2009 = derive { name="rBeta2009"; version="1.0"; sha256="0ljzxlndn9ba36lh7s3k4biim2qkh2mw9c0kj22a507qbzw1vgnq"; depends=[]; };
 rCMA = derive { name="rCMA"; version="1.1"; sha256="0dswshg80hbgcib5x9w791sh71q5s4435q8sm9dh170v4ngbax0w"; depends=[]; };
 rCUR = derive { name="rCUR"; version="1.3"; sha256="1f38xbc5n91k2y88cg0sv1z2p4g5vl7v2k1024f42f7526g2p2lx"; depends=[lattice MASS Matrix]; };
 rCarto = derive { name="rCarto"; version="0.8"; sha256="08813l4xfahjyn0jv48q8f6sy402n78dqsg01192pxl2dfc2i9ry"; depends=[classInt maptools RColorBrewer]; };
 rChoiceDialogs = derive { name="rChoiceDialogs"; version="1.0.6"; sha256="0lp8amdalirpsba44aa3r31xnhmi36qb9qf8f8gdxxbarpgprsbi"; depends=[rJava]; };
 rClinicalCodes = derive { name="rClinicalCodes"; version="1.0.1"; sha256="1p4p8r2n0k8h9xdzbngb95rshjp3376f5lsx228biqmswhpkhvlf"; depends=[RCurl rjson stringr tm XML]; };
-rDEA = derive { name="rDEA"; version="1.1-1"; sha256="17j7cz08nd5sgr1z75jlrdjl9ffkdhmzmqcyrf1qcy36v9i2fqzk"; depends=[maxLik slam truncnorm truncreg]; };
+rDEA = derive { name="rDEA"; version="1.2-1"; sha256="0zm9vnysj5j3kq8n8ljgxqn45jf1c6cg7mcvpd36bs75kz03bwig"; depends=[maxLik slam truncnorm truncreg]; };
 rDNA = derive { name="rDNA"; version="1.30.1"; sha256="12h83zirv55sryc1zww97ws8kvsym1z7p7y5d4w43nam8mi3fpcd"; depends=[rJava]; };
 rDVR = derive { name="rDVR"; version="0.1.1"; sha256="19a4f9k65bd49vkn3sxkjdmcpwyawk7gwmvancvqr745gfgs0wzg"; depends=[RCurl]; };
-rEMM = derive { name="rEMM"; version="1.0-9"; sha256="0b3g30s8nw107y5yg113xdw1s2h96mq0j5cldj01z3j676idjgw5"; depends=[clusterGeneration igraph MASS proxy]; };
+rEMM = derive { name="rEMM"; version="1.0-10"; sha256="0yngddddrc8fwqda79vc3sz58c1amns69ycn7rbyfzqwiifsvdjk"; depends=[clusterGeneration igraph MASS proxy]; };
 rFDSN = derive { name="rFDSN"; version="0.0.0"; sha256="1ffiqpdzy4ipy2aci22zkih4373ifkjkpvsrza8awhyf9fwqwdsl"; depends=[XML]; };
 rFerns = derive { name="rFerns"; version="1.1.0"; sha256="00ddb9zwf4hqkx9qmrndz182mg69mb5fyg0v0v4b32sy4sixnps5"; depends=[]; };
 rGammaGamma = derive { name="rGammaGamma"; version="1.0.12"; sha256="1051ah6q11qkxj1my4xybbzc8xcqkxfmps8mv2his5cyfllwidbs"; depends=[gsl]; };
@@ -5499,7 +5513,7 @@ rJPSGCS = derive { name="rJPSGCS"; version="0.2-7"; sha256="1j8lc56q20b0qkl20r8m
 rJava = derive { name="rJava"; version="0.9-6"; sha256="008g6s6rcb5lnz5y2a2rs4iq85a4nl522g714s1w1r153qcc0jz0"; depends=[]; };
 rJavax = derive { name="rJavax"; version="0.3"; sha256="0sv2fjinp4wmdfvcpgm4hv8v3fkiiv84ywqyr4hz86j50ncd79km"; depends=[rJava]; };
 rJython = derive { name="rJython"; version="0.0-4"; sha256="13fpcw37cca738v9idqgi3gv9avfkfwfacxj54p2c4wyg46ghnah"; depends=[rJava rjson]; };
-rLTP = derive { name="rLTP"; version="0.1"; sha256="0dv8jj8rgcx4cbbs10sqdblcznxgm9ld5md922ghnka4ymar244m"; depends=[RCurl]; };
+rLTP = derive { name="rLTP"; version="0.1.2"; sha256="1cr0r3v7d09bss16fxls341l71i9wkg91hr2hiyr4cl5fg35zzgb"; depends=[RCurl]; };
 rLakeAnalyzer = derive { name="rLakeAnalyzer"; version="1.7.6"; sha256="03gdr4swy3dq6vkq4q44sdn7slgjzcqzd2pmhac4bghgzgk3zgj8"; depends=[plyr]; };
 rLiDAR = derive { name="rLiDAR"; version="0.1"; sha256="1zm3c3xpxk1ll0cq589k1kf69wgn93qmaqkvpgcjib0ay35q7c7f"; depends=[bitops deldir geometry plyr raster rgl sp spatstat]; };
 rLindo = derive { name="rLindo"; version="8.0.1"; sha256="05qyc4wvpjgw8jxmwn2nwybi695fjn0cdilkprwmjg07c82f0q5n"; depends=[]; };
@@ -5525,11 +5539,11 @@ rags2ridges = derive { name="rags2ridges"; version="1.4"; sha256="1vwd39vp8xdrcz
 rainbow = derive { name="rainbow"; version="3.3"; sha256="0xiqljshkdhhkdgcvz5n9qgbxgxskpxbq14vbpil9nqw2syj9xvj"; depends=[cluster colorspace hdrcde ks MASS pcaPP]; };
 raincpc = derive { name="raincpc"; version="0.4"; sha256="0yzpyidvf24frf82pj7rarjh0ncm5dhm0mmpsf2ycqlvp0qld10i"; depends=[SDMTools]; };
 rainfreq = derive { name="rainfreq"; version="0.3"; sha256="0985ck2bglg22gfj7m0hc7kpk0apljsbssf1ci99mgk47yi8fk9v"; depends=[RCurl SDMTools]; };
-ramify = derive { name="ramify"; version="0.3.0"; sha256="1pysv802pyab06zl41b71x91527fw1smw4x2lcj2xc3p95yb4zb9"; depends=[]; };
+ramify = derive { name="ramify"; version="0.3.1"; sha256="1anma8kwfhm4k74fakpifrymnrjxmmk48jf1apxkg3406xcxy020"; depends=[]; };
 ramps = derive { name="ramps"; version="0.6-13"; sha256="1y7jaajzbf6d9xwr0rg0qr43l8kncgwbpfy5rpka90g3244v8nwz"; depends=[coda fields maps Matrix nlme]; };
 randNames = derive { name="randNames"; version="0.2"; sha256="0mgfwdbadfvxg1dp8aqp2c24lkhz3bi9ssmym4ns6xjq088l3ldh"; depends=[dplyr httr jsonlite]; };
 randaes = derive { name="randaes"; version="0.3"; sha256="14803argy0xdd8mpn4v67gbp90qi2is4x6na9zw7i9pm504xji1x"; depends=[]; };
-random = derive { name="random"; version="0.2.4"; sha256="17d1gcdymgcc08hx3998vs0x70fn8gxw2a1ycm9z7xrasx03g7kn"; depends=[curl]; };
+random = derive { name="random"; version="0.2.5"; sha256="0n96zv3b95msahpzdwfqsd9i9bq2z94flxxm8ghnqb0b75qcsdg0"; depends=[curl]; };
 random_polychor_pa = derive { name="random.polychor.pa"; version="1.1.4-1"; sha256="1051v7krrawdqnhz9q01rsknp2i7iv82d370q7m9i9d9i8wfnpk5"; depends=[boot MASS mvtnorm nFactors psych sfsmisc]; };
 randomForest = derive { name="randomForest"; version="4.6-10"; sha256="0glj08w6sbabr3n71kzd5w3jb7vhrys8rq904j27a4xk0qp4s5lv"; depends=[]; };
 randomForestSRC = derive { name="randomForestSRC"; version="1.6.1"; sha256="174ky1wwdpq6wkn8hanfpfgy55jf6v1hlm6k688gjs0515y5490r"; depends=[]; };
@@ -5538,7 +5552,7 @@ randomLCA = derive { name="randomLCA"; version="1.0-2"; sha256="14v6jmsbyzmavxjd
 randomNames = derive { name="randomNames"; version="0.0-8"; sha256="10fhqxnnw6gk5g8jnb83hh2nvvj65g8mwy7rfln8yzq93gjxnykm"; depends=[data_table]; };
 randomUniformForest = derive { name="randomUniformForest"; version="1.1.5"; sha256="1amr3m7h5xcb8gahrr58233chsnx1naf9x5vpjy9p5ivh71xcxf7"; depends=[cluster doParallel foreach ggplot2 gtools iterators MASS pROC Rcpp]; };
 randomizationInference = derive { name="randomizationInference"; version="1.0.3"; sha256="0x36r9bjmpx90fz47cha4hbas4b31mpnbd8ziw2wld4580jkd6mk"; depends=[matrixStats permute]; };
-randomizeBE = derive { name="randomizeBE"; version="0.3-1"; sha256="06hj614wp9lb348qwyqgw5zk2vn0m81bkwz4jprgjd72kpy8kv1h"; depends=[]; };
+randomizeBE = derive { name="randomizeBE"; version="0.3-2"; sha256="1mkq1fpr7bwlk01246qy6w175jcc94q8sb3pyjkdr8yms6iqk8i7"; depends=[]; };
 randomizr = derive { name="randomizr"; version="0.2.2"; sha256="0g870sr8zjfl1dh3ay14kd6v6jg2qw86w2wcdzr8f201xy5i1fgr"; depends=[]; };
 randtests = derive { name="randtests"; version="1.0"; sha256="03z3kxl4x0l91dsv65ld9kgc58z82ld1f4lk18i18dpvwcgkqk82"; depends=[]; };
 randtoolbox = derive { name="randtoolbox"; version="1.16"; sha256="03z4g2mmdywsgl95xbj80awirkgrghdk2kwhsh58p00aq4bpl5ff"; depends=[rngWELL]; };
@@ -5551,7 +5565,7 @@ rapportools = derive { name="rapportools"; version="1.0"; sha256="1sgv4sc737i12a
 rareGE = derive { name="rareGE"; version="0.1"; sha256="0v3a2wns77q923ilddicqzg0108f8kmfdnsff1n65icin7cfzsny"; depends=[MASS nlme survey]; };
 rareNMtests = derive { name="rareNMtests"; version="1.1"; sha256="13r2hipqsf8z9k48ha5bh53n3plw1whb7crpy8zqqkcac8444b2z"; depends=[vegan]; };
 rasclass = derive { name="rasclass"; version="0.2.1"; sha256="04g2sirxrf16xjmyn4zcci757k7sgvsjbg0qjfr5phbr1rssy9qf"; depends=[car e1071 nnet randomForest RSNNS]; };
-raster = derive { name="raster"; version="2.3-40"; sha256="1swfhf6c70ybvlkw5v2wg0zbzsmzn63n9fkwj4sfp3n08flikma2"; depends=[sp]; };
+raster = derive { name="raster"; version="2.4-15"; sha256="0p2wrzagdj1v7ambj2grjg10xzahb5z1nz1qdxjf1p0v10hf3pfx"; depends=[Rcpp sp]; };
 rasterVis = derive { name="rasterVis"; version="0.35"; sha256="0kdpng32b3l0hsf24zzj5m5srcka1wr26dpxfjxxsyilg6frp83r"; depends=[hexbin lattice latticeExtra raster RColorBrewer sp zoo]; };
 rateratio_test = derive { name="rateratio.test"; version="1.0-2"; sha256="1a2v12z2dr893ha80fhada1820z5ih53w4pnsss9r9xw3hi0m6k5"; depends=[]; };
 raters = derive { name="raters"; version="2.0.1"; sha256="16jnx6vv39k4niqkdlj4yhqx8qbrdi99bwzxjahsxr12ab5npbp1"; depends=[]; };
@@ -5562,14 +5576,14 @@ rbamtools = derive { name="rbamtools"; version="2.10.0"; sha256="00y5393nac4x1vz
 rbefdata = derive { name="rbefdata"; version="0.3.5"; sha256="12mcqz0pqgwfw5fmma0gwddj4zk0hpwmrsb74dvzqvgcvpfjnv98"; depends=[RColorBrewer RCurl rjson rtematres wordcloud XML]; };
 rbenchmark = derive { name="rbenchmark"; version="1.0.0"; sha256="010fn3qwnk2k411cbqyvra1d12c3bhhl3spzm8kxffmirj4p2al9"; depends=[]; };
 rbhl = derive { name="rbhl"; version="0.1.0"; sha256="1m2n1qczhhdlv9pkmw9dlqi2wmdw8wac8d557c4rk0vnzwzgpgpi"; depends=[httr plyr RJSONIO XML]; };
-rbison = derive { name="rbison"; version="0.4.5"; sha256="1bvirsil4674r5xb0ksmzdrg0km988rsmq93mr0q6a089zw9lhna"; depends=[dplyr ggplot2 gridExtra httr jsonlite mapproj maptools plyr sp]; };
+rbison = derive { name="rbison"; version="0.4.8"; sha256="10kwlf7vrzw2rhsdwih5lcvjw0bz0n88mp74ayc9331d8j226214"; depends=[dplyr ggplot2 httr jsonlite mapproj plyr sp]; };
 rbitcoinchartsapi = derive { name="rbitcoinchartsapi"; version="1.0.4"; sha256="0r272jvjh3rzch8dmn4s0a5n5k6dsir7pr4qswzfvafqjdiwjajz"; depends=[RCurl RJSONIO]; };
 rbmn = derive { name="rbmn"; version="0.9-2"; sha256="1zy832y399cmfmhpyfh7vfd293fylf1ylmp8w8krkmzkmyfa80f2"; depends=[MASS]; };
 rbounds = derive { name="rbounds"; version="2.1"; sha256="1h334bc37r1vbwz1b08jazsdrf6qgzpzkil9axnq5q04jf4rixs3"; depends=[Matching]; };
 rbugs = derive { name="rbugs"; version="0.5-9"; sha256="1kvn7x931gjpxymrz0bv50k69s1x1x9mv34vkz54sdkmi08rgb3y"; depends=[]; };
 rbundler = derive { name="rbundler"; version="0.3.7"; sha256="0wmahn59h9vqm6bq1gwnf6mvfkyhqh6xvdc5hraszn1419asy26f"; depends=[devtools]; };
 rcbalance = derive { name="rcbalance"; version="1.6"; sha256="0nbwsisx4ajdccywwvpg2xcaf8b4b25zij2qcb39yzmlz0yk6jjz"; depends=[MASS plyr]; };
-rcdd = derive { name="rcdd"; version="1.1-8"; sha256="09bb92rp44palx9dvc9pb0gdmb1g22289xjk8p9s918lalc6i9aw"; depends=[]; };
+rcdd = derive { name="rcdd"; version="1.1-9"; sha256="1mwg9prf7196b7r262ggdqsfq1i7czm1a0apk4j5014cxzyb6j5s"; depends=[]; };
 rcdk = derive { name="rcdk"; version="3.3.2"; sha256="02rlg3w8dbmag8b4z4wayh7xn61xc9g3647kxg91r0mvfhmrxl2h"; depends=[fingerprint iterators png rcdklibs rJava]; };
 rcdklibs = derive { name="rcdklibs"; version="1.5.8.4"; sha256="0mzkr23f4d639vhxfdbg44hzxapmpqkhc084ikcj93gjwvdz903k"; depends=[rJava]; };
 rchallenge = derive { name="rchallenge"; version="1.1"; sha256="1qad0mcadr3zw5r37rgwnqf4ic9brlw3zl5n4jcxyaj324fj4pa3"; depends=[knitr rmarkdown]; };
@@ -5601,9 +5615,8 @@ rebird = derive { name="rebird"; version="0.1.1"; sha256="0s8wmp2sghs56ppca57fjf
 rebmix = derive { name="rebmix"; version="2.7.1"; sha256="1m3mmqi4kfai0hx2khkblqairp59fgh0japg23rgib1djmdcqb4n"; depends=[]; };
 rebus = derive { name="rebus"; version="0.0-5"; sha256="06rl6knnk93k537hhjx4r55hq6hssij7xc426ilki329vwfi5kyf"; depends=[]; };
 recalls = derive { name="recalls"; version="0.1.0"; sha256="121r2lf32x4yq8zxx6pbnphs7ygn382ns85qxws6jnqzy52q41vh"; depends=[RCurl RJSONIO]; };
-reccsim = derive { name="reccsim"; version="0.9-1"; sha256="17nsp91xq20vfwjfwav80qjs2wc7gwpmrdnwv7lc61baq0kkcs7k"; depends=[]; };
 recluster = derive { name="recluster"; version="2.8"; sha256="05g8k10813zbkgja6gvgscdsjd99q124jx31whncc4awdsgk69s4"; depends=[ape cluster phangorn phytools picante vegan]; };
-recommenderlab = derive { name="recommenderlab"; version="0.1-5"; sha256="1hpgd2la4wnlxx5h8cjni4i978hdssr041zrg851lpjrkbxmxfsi"; depends=[arules Matrix proxy registry]; };
+recommenderlab = derive { name="recommenderlab"; version="0.1-6"; sha256="1ds1zvjgn3k7pha8pf3x7q0403zjf45b9hjsw3ixfzd747kwkaw0"; depends=[arules Matrix proxy registry]; };
 recommenderlabBX = derive { name="recommenderlabBX"; version="0.1-0"; sha256="0dl79cxarsfp8l4nxnns05jwnjygigjhwpjrr4lzx4nvsfxmgsr2"; depends=[recommenderlab]; };
 recommenderlabJester = derive { name="recommenderlabJester"; version="0.1-0"; sha256="1m5jg8gs16cwwwcnjzqkyzwyip8fshrwhmqz8g7nlf6g3p9347rl"; depends=[recommenderlab]; };
 reconstructr = derive { name="reconstructr"; version="1.1.0"; sha256="1kswvpmhk3zzwm4nv6pjb80ww95n9bd4q9j7bhk9kql8v5mnfg5m"; depends=[Rcpp]; };
@@ -5618,8 +5631,8 @@ refund = derive { name="refund"; version="0.1-11"; sha256="1afsxab1jivs4vj6diqh7
 refund_wave = derive { name="refund.wave"; version="0.1"; sha256="1vnhg7gi5r8scwivqjwhrv72sq8asnm4whx3jk39saphdxpk5hxv"; depends=[glmnet wavethresh]; };
 regRSM = derive { name="regRSM"; version="0.4"; sha256="1rg74jqj8rw69q6my0n4alflx7mgfwng35ff72bxwjhn9ghhj347"; depends=[]; };
 regexr = derive { name="regexr"; version="1.0.2"; sha256="1mr8qmiz9bgq5v6f065z40aj9zllidsv6gg8mjc28zxmkz5zn6gp"; depends=[]; };
-registry = derive { name="registry"; version="0.2"; sha256="1ifv9sql70kylfj12cdb1j1zpk3ix728m8qj46sf1zyc5mhll01s"; depends=[]; };
-reglogit = derive { name="reglogit"; version="1.2-2"; sha256="0nq60s8l860z6nd52l6c77vamis7hl2j667gkxry0jir2pxsk4jp"; depends=[boot Matrix mvtnorm]; };
+registry = derive { name="registry"; version="0.3"; sha256="0c7lscfxncwwd8zp46h2xfw9gw14dypqv6m2kx85xjhjh0xw99aq"; depends=[]; };
+reglogit = derive { name="reglogit"; version="1.2-4"; sha256="0ma1wddxhmja268ddkpcvskqf4lwq61brswnm600fms8ks7r78d3"; depends=[boot Matrix mvtnorm]; };
 regpro = derive { name="regpro"; version="0.1.0"; sha256="0d47ffsqx1633pmf3abi7wksyng2g71mz2z9nb2zqdak794l1n44"; depends=[denpro]; };
 regress = derive { name="regress"; version="1.3-14"; sha256="0qnks28fr8siq95iiiqyvz82cbdg14i18rj7g9rqyjhiam12fshl"; depends=[]; };
 regsubseq = derive { name="regsubseq"; version="0.12"; sha256="0879r4r8kpr8jd6a3fa9cifm7cv0sqzz8z1alkm1b2fr1625md3g"; depends=[]; };
@@ -5640,21 +5653,21 @@ relsurv = derive { name="relsurv"; version="2.0-5"; sha256="0lwmdz1hm46qlkvfvvyc
 remMap = derive { name="remMap"; version="0.2-0"; sha256="1k2niiaq2lr4inrx443clff9cqqvyiiwd45k7yqjd8ixnbaa3mrk"; depends=[]; };
 remix = derive { name="remix"; version="2.1"; sha256="0s1gaf7vj08xd4m7lc9qpwvk0mpamabbxk71970mfazx6hk24dr0"; depends=[ascii Hmisc plyr survival]; };
 remote = derive { name="remote"; version="1.0.0"; sha256="09840z50x5i8bsi49s3asqhcz84z16pyq9w50yay4h8x82w3hfh3"; depends=[foreach raster Rcpp]; };
-rentrez = derive { name="rentrez"; version="0.4.1"; sha256="1prpzfq5106f0r5z4ffjvs9qkmfaf67icj8k1wngqwmvl2wg88gq"; depends=[httr jsonlite XML]; };
+rentrez = derive { name="rentrez"; version="0.4.2"; sha256="00rf5bnp9d6jy93b1y30sf4vszai7zcp57r6n9d72krk9ha8ld9n"; depends=[httr jsonlite XML]; };
 repfdr = derive { name="repfdr"; version="1.1-3"; sha256="15f7x7vqwlpyzvzsybyz825a9dmglbrngjmajrsqlwffypgxjvi8"; depends=[]; };
 repijson = derive { name="repijson"; version="0.1.0"; sha256="16iypvsmh5r9pk2k6npp17ya5dgkxihsj29pppd3zvdpm3vvd8k1"; depends=[geojsonio ggplot2 jsonlite OutbreakTools plyr sp]; };
 replicatedpp2w = derive { name="replicatedpp2w"; version="0.1-1"; sha256="0q6mfrdjpx6nh4xgr5i7ka3xvnx9585xdhni020q4pm05rhimid2"; depends=[spatstat]; };
-replicationInterval = derive { name="replicationInterval"; version="0.3"; sha256="1zqs114514xj59dlkhw5kmq73grghmb3i5rnnq05qzgf5wjn581i"; depends=[MBESS]; };
+replicationInterval = derive { name="replicationInterval"; version="1.0.0"; sha256="1ll6gyibd41kasc3sn6hvydc6xaacx6h5q5nhj09ha36x4lgr0gb"; depends=[MBESS]; };
 repmis = derive { name="repmis"; version="0.4.4"; sha256="12sw9l2nifkvri5kvgf0br7yqqmjlq5rj58g6yik8gh7wwy5157z"; depends=[data_table digest httr plyr R_cache]; };
 repolr = derive { name="repolr"; version="2.0"; sha256="10wg07sfxcxzswf3zh5sx2cm9dxjx11zymy82a4q9awnacb5gp9b"; depends=[gee]; };
 reportRx = derive { name="reportRx"; version="1.0"; sha256="0npiflql0lq8sqp6xgydxbw7xdr0zdxj1s2h4bnpmn4clc05r7m4"; depends=[aod cmprsk geoR reshape stringr survival xtable]; };
 reportr = derive { name="reportr"; version="1.1.2"; sha256="0lxnmay9vgg7dsa3scszx3v4lb6m3bv6kjl0dk7hrl7bd67azdrk"; depends=[]; };
 reports = derive { name="reports"; version="0.1.4"; sha256="0r74fjmdqax2x5fhbkdxb8gsvzi6v794fh81x4la9davz6w1fnxh"; depends=[]; };
-reporttools = derive { name="reporttools"; version="1.1.1"; sha256="0cnxzq679f860z063j3pbm2c5qcaz45g73khj9rdp3if0cci8ikj"; depends=[xtable]; };
+reporttools = derive { name="reporttools"; version="1.1.2"; sha256="1i87xmp7zchcb8w8g7nypid06l2439qyrvpwsjz6qny954w6fa2b"; depends=[xtable]; };
 repra = derive { name="repra"; version="0.4.2"; sha256="1djcs83z8ckpmsbyzscnysmy45z28kswzm852176b9pip21mb1w8"; depends=[assertthat data_table dplyr ggplot2 Rcpp reshape2]; };
 represent = derive { name="represent"; version="1.0"; sha256="0jvb40i6r1bh9ysfqwsj7s1g933d7z5fq9d618yjrqr6hbbqsvac"; depends=[]; };
 reproducer = derive { name="reproducer"; version="0.1.3"; sha256="1pz2l123xc16m1pqi95khg9r267s25igcyjgr7hn9gy623cqgzah"; depends=[ggplot2 gridExtra metafor openxlsx RColorBrewer tm wordcloud xtable]; };
-rerddap = derive { name="rerddap"; version="0.1.0"; sha256="1a58vsm1m9ybafda6pak0fa7kdfscslq9855a5r2x12bzqy98k4f"; depends=[data_table digest dplyr httr jsonlite ncdf xml2]; };
+rerddap = derive { name="rerddap"; version="0.2.0"; sha256="15p3nh421k7pavjgpmj7lah8mnld3g3zmqima4v2vs81yrg72s24"; depends=[data_table digest dplyr httr jsonlite ncdf xml2]; };
 resample = derive { name="resample"; version="0.4"; sha256="1rckzm2p0rkf42isc47x72j17xqrg8b7jpc440kn24mqw4szgmgh"; depends=[]; };
 resemble = derive { name="resemble"; version="1.1.1"; sha256="0mz5mxm6p1drfx2s9dx35m2bnvirr8lkjjh5b4vdk9p2cdv1qkkv"; depends=[foreach iterators pls Rcpp RcppArmadillo]; };
 reshape = derive { name="reshape"; version="0.8.5"; sha256="08jm9fb02g1fp9vmiqmc0yki6n3rnnp2ph1rk8n9lb5c1s390f4k"; depends=[plyr]; };
@@ -5683,9 +5696,9 @@ rforensicbatwing = derive { name="rforensicbatwing"; version="1.3"; sha256="0ff4
 rgabriel = derive { name="rgabriel"; version="0.7"; sha256="1c6awfppm1gqg7rm3551k6wyhqvjpyidqikjisg2p2kkhmyfkyzx"; depends=[]; };
 rgam = derive { name="rgam"; version="0.6.3"; sha256="0mbyyhhyr7ijv2sq9n7g0vaxivngwf4nbb5398xpsh7fxvgw5zdw"; depends=[Rcpp RcppArmadillo]; };
 rgauges = derive { name="rgauges"; version="0.2.0"; sha256="0p42hh32wcjcchsalpsan52kvz6nd1gw28xnydqgfzkzcqkl22dd"; depends=[data_table ggplot2 gridExtra httr lubridate plyr reshape2 scales]; };
-rgbif = derive { name="rgbif"; version="0.8.4"; sha256="13rcqqa19w3gzab4xg006kj7m5zj4x1hbxpam8yg1r3n9dad1bjz"; depends=[data_table ggplot2 httr jsonlite magrittr V8 whisker XML]; };
+rgbif = derive { name="rgbif"; version="0.8.6"; sha256="03pbqg82xqwzi0x86qpcgznxwvivrai16j5bpv8y21ipxv6dy3xw"; depends=[data_table ggplot2 httr jsonlite magrittr V8 whisker XML]; };
 rgcvpack = derive { name="rgcvpack"; version="0.1-4"; sha256="1vlvw9slrra18qaizqk2xglzky0i6z3bsan85x908wrg8drss4h5"; depends=[]; };
-rgdal = derive { name="rgdal"; version="0.9-3"; sha256="011vw2pgaxgbba0a0c5ha2n0haljbn00z5km13fhgqlvhhdhzd6n"; depends=[sp]; };
+rgdal = derive { name="rgdal"; version="1.0-4"; sha256="0c0fwq11ql1spw3791x7yd8fcmi0rlsxvk2bhf0951kvc99vbyv9"; depends=[sp]; };
 rgenoud = derive { name="rgenoud"; version="5.7-12"; sha256="17gzkn4laylnksy8h2w8c0whcxpchsx7bwjzk1q5sfqxswclqq0g"; depends=[]; };
 rgeos = derive { name="rgeos"; version="0.3-11"; sha256="1x5fna4n5ck0wfdrplj5q5cvv289fzsmlr95q86na78lvwn14fzl"; depends=[sp]; };
 rgexf = derive { name="rgexf"; version="0.15.3"; sha256="0iw1vk32ad623aasf6f8hl0qkj59f1dsc2riwqc775zvs5w7k2if"; depends=[igraph Rook XML]; };
@@ -5696,6 +5709,7 @@ rgp = derive { name="rgp"; version="0.4-1"; sha256="1p5qa46v0sli7ccyp39iysn04yvq
 rgpui = derive { name="rgpui"; version="0.1-2"; sha256="0sh5wj4f2wj6g3r7xaq95q89n0qjavchi5kfi6sj1j34ykybbs3g"; depends=[emoa rgp shiny]; };
 rgr = derive { name="rgr"; version="1.1.11"; sha256="01hlj3nqzfsffr4k7d3iyp4mfqs1sy94d0scy64wh9kkplrzkh4i"; depends=[fastICA MASS]; };
 rgrass7 = derive { name="rgrass7"; version="0.1-0"; sha256="19fwf3gaq25x3imj9kc1112cf9dhafp0d1gjly2xh2gz1kam5wl6"; depends=[sp XML]; };
+rhandsontable = derive { name="rhandsontable"; version="0.1"; sha256="0nssb7gqx3rsc2mbic2mlzldq5vpmp97qv9c62d7pkbxxwxlm1f0"; depends=[htmlwidgets jsonlite magrittr]; };
 rhosp = derive { name="rhosp"; version="1.06"; sha256="0kii29w292kffxablqnmgvl127jwsriz0p5y5d1xd6n8yzji79j3"; depends=[]; };
 ri = derive { name="ri"; version="0.9"; sha256="00y01n9cx95bjhdpnh7vi0xd5p6al3sxbjszbyxafn7m9mygmnhv"; depends=[]; };
 riceware = derive { name="riceware"; version="0.4"; sha256="0pky0bwf10qcdgg9fgysafr35xbmnr9q0jbh56fawj99nbyj3m70"; depends=[random]; };
@@ -5704,8 +5718,6 @@ ridge = derive { name="ridge"; version="2.1-3"; sha256="1i5klabnv328kgy7p11nwdid
 ridigbio = derive { name="ridigbio"; version="0.2.2"; sha256="065pad7pprax1mgqikjrl4nygyw5mjr80j21072zb7qcki9ag2k5"; depends=[httr jsonlite]; };
 rinat = derive { name="rinat"; version="0.1.4"; sha256="1m5k1wcinm6is3mf86314scgy3xfifz7ly7il5zgqyg9jkkpywbz"; depends=[ggplot2 httr jsonlite maps plyr]; };
 rindex = derive { name="rindex"; version="0.12"; sha256="1k9zihvrp955c4lh70zjlsssviy2app8w6mv5ln4nawackbz0six"; depends=[regtest]; };
-ringbuffer = derive { name="ringbuffer"; version="1.1"; sha256="1jj6zdvqlkc30bnxapg0sjl5ci5kq76611smqc4jc8adzhzwrh3f"; depends=[]; };
-ringscale = derive { name="ringscale"; version="0.1.2"; sha256="1gnnapkvxmkfws8dw41gj9h3svy3h6mi4zv413aykg9vrmy7d3rp"; depends=[FITSio]; };
 rio = derive { name="rio"; version="0.2"; sha256="0v64zkxcs2bajdh9hqlhacc6msy7l3h31cvcxpj6in5hb3m1wfv3"; depends=[curl data_table foreign haven jsonlite openxlsx readODS readxl XML]; };
 rioja = derive { name="rioja"; version="0.9-5"; sha256="0bi80d8ffn1kgs0b45ia8rj057id8l3mnph16y5wc5nr8fndxrm4"; depends=[gdata lattice mgcv vegan]; };
 ripa = derive { name="ripa"; version="2.0-2"; sha256="0n1gaga0d4bb9qdlm7gksa1nwi4y28kbgwr3icwqgihf1bfb9m81"; depends=[Rcpp]; };
@@ -5715,7 +5727,7 @@ risksetROC = derive { name="risksetROC"; version="1.0.4"; sha256="1fh0jf8v536qzf
 rite = derive { name="rite"; version="0.3.4"; sha256="196ashcfj5p52qpnpnrkg7vxq87v7vhf1d7z40mk134gmxk2784j"; depends=[knitr markdown RCurl tcltk2]; };
 riv = derive { name="riv"; version="2.0-4"; sha256="1c9k62plqgxcgcm2j1s26hqvgww96n6bfjz2yk7m3p2wf8gkkyam"; depends=[MASS quantreg rrcov]; };
 rivernet = derive { name="rivernet"; version="1.0"; sha256="0za5k00k9vivpq4wr1xqc4aw7mlcxhjj2b3iiip1qy13fg7bhbjm"; depends=[]; };
-riverplot = derive { name="riverplot"; version="0.3"; sha256="1x02ci6744k3lsqh53vmpmv957b5wwr1idvn16nzixvzknixryq8"; depends=[]; };
+riverplot = derive { name="riverplot"; version="0.5"; sha256="024i1w08c51bflmw608zizif6419xx40sk6pibnqyjnk74p6y7sm"; depends=[]; };
 rivervis = derive { name="rivervis"; version="0.46.0"; sha256="19jsl5g46jcbc0kg47bsif1wrw9z9brgvwdcxqjc89shnx3hzzfv"; depends=[]; };
 rivr = derive { name="rivr"; version="0.9.2"; sha256="1xz7l7j8adhlzdasx9ljrh8z6cx017pl6761z8q4ixpcgr3vf5ws"; depends=[Rcpp reshape2]; };
 rjade = derive { name="rjade"; version="0.1"; sha256="0f1jljj6m1almz0na984n0g314y0rl6a0mx04rbrpipgfgz1h37c"; depends=[V8]; };
@@ -5737,7 +5749,7 @@ rmarkdown = derive { name="rmarkdown"; version="0.7"; sha256="19vp2kipzw073llgvn
 rmatio = derive { name="rmatio"; version="0.11.0"; sha256="0cmlh16nf3r94gpczq0j46g4dgjy9q1c647rqd9i14hvfrpxzcfa"; depends=[lattice Matrix]; };
 rmeta = derive { name="rmeta"; version="2.16"; sha256="1s3n185kk0ddv8v6c7mbc7cpj6yg532r7is6pjf9vda7317rxywy"; depends=[]; };
 rmetasim = derive { name="rmetasim"; version="2.0.4"; sha256="1a3bhiybzdvgqnnyh3d31d6vdsp4mi33sv8ks9b9xd9r369npk86"; depends=[ade4 ape gtools]; };
-rmgarch = derive { name="rmgarch"; version="1.2-8"; sha256="19q35kzyzzs19b4xgslrnl8ihlx1wlmrwfdimnq8racfx0y46lm5"; depends=[Bessel ff MASS Matrix pcaPP Rcpp RcppArmadillo Rsolnp rugarch shape spd xts zoo]; };
+rmgarch = derive { name="rmgarch"; version="1.2-9"; sha256="0nwhjypcfzaamg5kdmlx2lp5pr2xpjxdx15j5vs5ki8kvy65hzqj"; depends=[Bessel ff MASS Matrix pcaPP Rcpp RcppArmadillo Rsolnp rugarch shape spd xts zoo]; };
 rminer = derive { name="rminer"; version="1.4"; sha256="07s971fpl16l4ryrbb24zwy1xx6dwia1ms4hrcpnpz3kb8f6ydda"; depends=[adabag Cubist e1071 kernlab kknn lattice MASS mda nnet party plotrix pls randomForest rpart]; };
 rmngb = derive { name="rmngb"; version="0.6-1"; sha256="1wyq8jvzqpy1s6w0j77ngh5x2q7mpj0ib01m8mla20w6yr6xbqjk"; depends=[Hmisc]; };
 rmongodb = derive { name="rmongodb"; version="1.8.0"; sha256="035a76ak6wi21hdvgzzbggz0qnb53rrr2wfx97ngc8ijwhw8hjh7"; depends=[jsonlite plyr]; };
@@ -5752,8 +5764,8 @@ rngSetSeed = derive { name="rngSetSeed"; version="0.3-2"; sha256="00mqjjkhbnvxqk
 rngWELL = derive { name="rngWELL"; version="0.10-3"; sha256="1wijscc0s6h1ipc1r8h179y94s1bzf409xlpiyr1njaxvvvpwvw1"; depends=[]; };
 rngtools = derive { name="rngtools"; version="1.2.4"; sha256="1fcgfqrrb48z37xgy8sffx91p9irp39yqzxv7nqp1x2hnwsrh097"; depends=[digest pkgmaker stringr]; };
 rngwell19937 = derive { name="rngwell19937"; version="0.6-0"; sha256="0m6icqf7nckdxxvmqvwfkrpjs10hc7l8xisc65q8iqpnpwl5p2f6"; depends=[]; };
-rnoaa = derive { name="rnoaa"; version="0.3.3"; sha256="12iwyl0nr6d8xpl5vcqwli4rlh79y8l13sfj34457klqdzmrg126"; depends=[data_table digest ggplot2 httr jsonlite lubridate maptools plyr RCurl rgdal rgeos scales sp stringr XML]; };
-rnrfa = derive { name="rnrfa"; version="0.1.5"; sha256="0lpa0gmf9j9adq0p41jgayzcwg6220bihnsfqj55d217mfalbhnd"; depends=[RCurl rgdal rjson sp stringr XML2R zoo]; };
+rnoaa = derive { name="rnoaa"; version="0.4.2"; sha256="14fd1mp7ydpqj0wqr3nyysks36dj7bmcyirpsbrn6pjjdasn6a0s"; depends=[dplyr ggplot2 httr jsonlite lubridate rgdal scales tidyr XML]; };
+rnrfa = derive { name="rnrfa"; version="0.2.0"; sha256="0hyy2hb2a6kslp7mplgrcd9506snq311alk51hqygr4zr6k15zl1"; depends=[RCurl rgdal rjson sp stringr XML2R zoo]; };
 robCompositions = derive { name="robCompositions"; version="1.9.1"; sha256="1n8mbm62ywp1wnccv85ydm91bzp05i4fjvyriid8751pcb4zndn9"; depends=[GGally MASS pls robustbase rrcov sROC]; };
 robcor = derive { name="robcor"; version="0.1-6"; sha256="1hw8simv93jq8a5y79hblhqz157wr8q9dzgm0xhvvv5nkzyqkpzf"; depends=[]; };
 robeth = derive { name="robeth"; version="2.7"; sha256="03pnwd3xjb9yv8jfav0s4l9k5pgpampp15ak7z0yvkjs20rvfq3d"; depends=[]; };
@@ -5785,7 +5797,7 @@ rowr = derive { name="rowr"; version="1.1.2"; sha256="1hvj17n3fy1jaaz551s1icjv1k
 roxygen2 = derive { name="roxygen2"; version="4.1.1"; sha256="0qr562p3jb9kqim6mj344956pikmq1137gv1p086b4k90h5c3wyd"; depends=[brew digest Rcpp stringr]; };
 royston = derive { name="royston"; version="1.2"; sha256="1rywc89qzx0hldbq10201bjdhz60pq2gmgd9b9j52mza3w4canjz"; depends=[moments nortest]; };
 rpanel = derive { name="rpanel"; version="1.1-3"; sha256="1wm0dcbyvxz4ily8skz2yda44n74x2nmc4pg11ja0yvk038gjfns"; depends=[]; };
-rpart = derive { name="rpart"; version="4.1-9"; sha256="108zsalgmp4mj66m2mxr56qrh3yz0pxfij81gri224r5brypqak1"; depends=[]; };
+rpart = derive { name="rpart"; version="4.1-10"; sha256="119dvh2cpab4vq9blvbkil5hgq6w018amiwlda3ii0fki39axpf5"; depends=[]; };
 rpart_plot = derive { name="rpart.plot"; version="1.5.2"; sha256="0aw0bhd0bliih7fsvnfkdkxq65v3v3fl88irp8vxrdblqgjyc09x"; depends=[rpart]; };
 rpart_utils = derive { name="rpart.utils"; version="0.5"; sha256="00ahvmly6cdf7qhhcic0dbjlljqq8kbhx15rc7vrkd3hzd55c0im"; depends=[rpart]; };
 rpartScore = derive { name="rpartScore"; version="1.0-1"; sha256="15zamlzbf6avir8zfw88531zg5c0a6sc5r9v5cy9h08ypf34xf4y"; depends=[rpart]; };
@@ -5794,7 +5806,7 @@ rpf = derive { name="rpf"; version="0.45"; sha256="1d22wjhv14rl16kljn42j4hba30x2
 rpg = derive { name="rpg"; version="1.4"; sha256="0sisn5l1qxlqg6jq4lzr7w3axkaw5jlpz8vl9gp2hs0spxsjhcyn"; depends=[RApiSerialize Rcpp uuid]; };
 rphast = derive { name="rphast"; version="1.6"; sha256="0ni8969bj3pv0wl8l0v352pqw2d5mlshsdw1rb6wlxk7qzfi5cl2"; depends=[]; };
 rplexos = derive { name="rplexos"; version="1.1.1"; sha256="1s3srk5f1ciy43vblwsy7wrwp2k2j5q52dfl4vjg69i63bh9yrpf"; depends=[data_table DBI doParallel dplyr foreach lubridate Rcpp RSQLite stringi tidyr]; };
-rplos = derive { name="rplos"; version="0.4.7"; sha256="0d6p6cgjmfv615mpvp6vxm92gxfdi6fn4mp0ixhj2gkm1hmpwwc5"; depends=[dplyr ggplot2 httr jsonlite lubridate plyr reshape2 solr whisker XML]; };
+rplos = derive { name="rplos"; version="0.5.0"; sha256="1ajwm413w7p41ifrp4flskgaqilrs3shzjbb2wnmwgwcnnkw43h9"; depends=[dplyr ggplot2 httr jsonlite lubridate plyr reshape2 solr whisker]; };
 rplotengine = derive { name="rplotengine"; version="1.0-5"; sha256="1wwpfnr5vi8z26alm8y5gply0y4iniagimldzy2z696djzz8p8p8"; depends=[xtable]; };
 rportfolios = derive { name="rportfolios"; version="1.0"; sha256="1zcv5ddmk15l0p03nlffimlhhpcc7l1c05xl2d1xlfk58rkvqns6"; depends=[]; };
 rprime = derive { name="rprime"; version="0.1.0"; sha256="1v6n1qi0i7x8xgizbyvp1mnwc316lsan4rvam44fgjj45fcd79gd"; depends=[assertthat plyr stringi stringr]; };
@@ -5809,7 +5821,7 @@ rrBlupMethod6 = derive { name="rrBlupMethod6"; version="1.3"; sha256="1qwv954mhr
 rrcov = derive { name="rrcov"; version="1.3-8"; sha256="0f71khnsvd95yh6y1hnl62vqjp1z3wg74g8jvg2q28v1ysk68p1b"; depends=[cluster lattice mvtnorm pcaPP robustbase]; };
 rrcovHD = derive { name="rrcovHD"; version="0.2-3"; sha256="18k5c590wbi0kmx4nl1mkv7h6339as0s4jcr9am8v9v3w4pn0xni"; depends=[pcaPP pls robustbase rrcov spls]; };
 rrcovNA = derive { name="rrcovNA"; version="0.4-7"; sha256="1b3ffcs1szwswsayz8q3w87wndd7xbcg5rqamhjr2damgialx3bq"; depends=[cluster lattice norm robustbase rrcov]; };
-rredis = derive { name="rredis"; version="1.6.9"; sha256="00fgrhyj6bai0kc18c2m1fsk9ja5c9q7m6dpsb8wsn4gs79mw3sc"; depends=[]; };
+rredis = derive { name="rredis"; version="1.7.0"; sha256="0wzamwpmx20did8xj8x9dllri2ps83viyqjic18ari7i4h1bpixv"; depends=[]; };
 rriskDistributions = derive { name="rriskDistributions"; version="2.1"; sha256="1sc0bj5sivclbq0grif99vclnlhg1k9dz4xdvng6vv392xkwbmfd"; depends=[eha mc2d msm tkrplot]; };
 rrlda = derive { name="rrlda"; version="1.1"; sha256="06n9jah190cz25n93jlb5zb0xrx91bjvxgswwdx9hdf0fmwrpkvz"; depends=[glasso matrixcalc mvoutlier pcaPP]; };
 rrules = derive { name="rrules"; version="0.1-0"; sha256="0f9msp289akzricjrm8dvfbh2dihfbszr7ms4fld1cr30zssajin"; depends=[]; };
@@ -5819,7 +5831,7 @@ rscala = derive { name="rscala"; version="1.0.6"; sha256="065ll2xza09hi05w4hq35j
 rscproxy = derive { name="rscproxy"; version="2.0-5"; sha256="1bjdv7drlnffcnyc0j8r22j7v60k1xj58bw8nk9l8wvnmngrjz86"; depends=[]; };
 rsdepth = derive { name="rsdepth"; version="0.1-5"; sha256="064jbb6gnx0sm41w3sbi6mvsbzsfkjqfici6frk8sfm9ybvm591j"; depends=[]; };
 rsdmx = derive { name="rsdmx"; version="0.4-6"; sha256="0hsf0jkp31qfvl4pxaqxwz1fvwgmqld3rnbk9g29g5bqwld40syc"; depends=[plyr RCurl XML]; };
-rseedcalc = derive { name="rseedcalc"; version="1.2"; sha256="1di9bzwxyxm9gs14ks9z6sixi656hz9xwmq3aaqh53cjjr1ka0rc"; depends=[]; };
+rseedcalc = derive { name="rseedcalc"; version="1.3"; sha256="18zmpjv6g8f7pmvqlp6khxyys9kdnq5x4zxwb6gwybsh4jxrymkp"; depends=[]; };
 rsem = derive { name="rsem"; version="0.4.6"; sha256="16nsbp4s20396h2in0zymbpmsn24gqlbik0vgv86zhy1yg1rz9ia"; depends=[lavaan MASS]; };
 rsgcc = derive { name="rsgcc"; version="1.0.6"; sha256="12f8xsg6abmhdgkrrc8sfzmv4i1pycq1g0jfad664d17yciw7rhh"; depends=[biwt cairoDevice fBasics gplots gWidgets gWidgetsRGtk2 minerva parmigene snowfall stringr]; };
 rsig = derive { name="rsig"; version="1.0"; sha256="129k78i8kc30bzlphdb68vv3sw2k6xyiwrhw08vhzz6mf3jxlqsh"; depends=[BBmisc glmnet Matrix superpc survcomp survival]; };
@@ -5833,7 +5845,7 @@ rstiefel = derive { name="rstiefel"; version="0.10"; sha256="0b2sdgpb3hzal34gd9l
 rstream = derive { name="rstream"; version="1.3.2"; sha256="1habswhdlx7l92s9p9554px4kf9f9mhk5vkdq2fv4wk3381c0fgi"; depends=[]; };
 rstudioapi = derive { name="rstudioapi"; version="0.3.1"; sha256="0q7671d924nzqsqhs8d9p7l907bcam56wjwm7vvz44xgj0saj8bs"; depends=[]; };
 rsubgroup = derive { name="rsubgroup"; version="0.6"; sha256="1hz8rnbsl97ch6sjwxdicn2sjyn6cajg2zwmfp03idzpb3ixlk7l"; depends=[foreign rJava]; };
-rsunlight = derive { name="rsunlight"; version="0.3.0"; sha256="148byg8180657ny01xny28sdawbq87hf89f8c1rzfjl5qwcxmbqd"; depends=[assertthat httr jsonlite plyr stringr]; };
+rsunlight = derive { name="rsunlight"; version="0.4.0"; sha256="0hmpmf0ma0bycb65bq18q4y78187y9rq0vsj2d8hdmkksvyqjviy"; depends=[httr jsonlite plyr stringr]; };
 rtable = derive { name="rtable"; version="0.1.0"; sha256="1jp7bd782ply2xb8p8xnmrds2w62bp7l2v4vlvbv1468kxhlfgf2"; depends=[knitr ReporteRs shiny tidyr xtable]; };
 rtape = derive { name="rtape"; version="2.2"; sha256="0q7rs7pc1k1kayr734lvh367j5qig2nnq5mgak1wbpimhl7z3wm7"; depends=[]; };
 rtdists = derive { name="rtdists"; version="0.2-6"; sha256="1f2yv4qq27i1fc0ys3kk31lsnbdzrmrk44widnxd19hxn4r05cs6"; depends=[evd gsl msm]; };
@@ -5847,6 +5859,7 @@ rts = derive { name="rts"; version="1.0-3"; sha256="0jqk0p2q1vx9l6zf9pbc5k3lsw4h
 rtype = derive { name="rtype"; version="0.1-1"; sha256="0wjf359w7gb1nrhbxknzg7qdys0hdn6alv07rd9wm6zynnn1vwxy"; depends=[]; };
 rucm = derive { name="rucm"; version="0.4"; sha256="1s3q6wfp9nb50rqsaq6h2wb48qvxncmlf8l4gm18pr25wkangfxq"; depends=[KFAS]; };
 rugarch = derive { name="rugarch"; version="1.3-4"; sha256="1za92hqfaws8azf2zml1q8mlbirrdw3rb4rvwg6sclfx7z7gsqkh"; depends=[chron expm ks nloptr numDeriv Rcpp RcppArmadillo Rsolnp SkewHyperbolic spd xts zoo]; };
+runittotestthat = derive { name="runittotestthat"; version="0.0-2"; sha256="15zdcvqkr5ivq6wk6dw8k6diginc6z7mdc18pswim90d99j2g9sm"; depends=[assertive RUnit]; };
 runjags = derive { name="runjags"; version="2.0.1-4"; sha256="1any5f7paf8a8yyvk594iixvh1l1dc87pil292sd1pq1lh2510lw"; depends=[coda lattice]; };
 ruv = derive { name="ruv"; version="0.9.5"; sha256="19n2zrbfg6kzks395iiv1wbz2zf1j25aap3iy3d8yspmasqxi93x"; depends=[]; };
 rv = derive { name="rv"; version="2.3.1"; sha256="0bjqwk7djl625fws3jlzr1naanwmrfb37hzkyy5szai52nqr2xij"; depends=[]; };
@@ -5854,7 +5867,7 @@ rvHPDT = derive { name="rvHPDT"; version="3.0"; sha256="05nrfnyvb8ar7k2bmn227rn2
 rvTDT = derive { name="rvTDT"; version="1.0"; sha256="09c2fbqnlwkhaxfmgpsdprl0bb447ajk9xl7qdlda201fvxkdc8v"; depends=[CompQuadForm]; };
 rvalues = derive { name="rvalues"; version="0.3"; sha256="0fkf0gngrx1rfa67blzf3xxjwhlp2m2jplxw3z3j9vgl6ray0nqs"; depends=[]; };
 rversions = derive { name="rversions"; version="1.0.1"; sha256="1qqar1cg8218dr4hp09629jx6yvwcnwxzp8grnqcmhbc5xyx76ch"; depends=[curl xml2]; };
-rvertnet = derive { name="rvertnet"; version="0.2.2"; sha256="14afdf0mflpa2arxdy44y8mak9j3cg2cgk97idd7k4pi8vf6q0jg"; depends=[data_table ggplot2 httr jsonlite maps plyr]; };
+rvertnet = derive { name="rvertnet"; version="0.3.0"; sha256="12gsd9p5v0kqdzrjksz10s54h3v3a79njahgajpz6qf3sm6f3jmj"; depends=[dplyr ggplot2 httr jsonlite maps plyr]; };
 rvest = derive { name="rvest"; version="0.2.0"; sha256="1bg9l0wzh9xs7rpacl8s6q33hkjvv85vsl8079qsri0lr856wni7"; depends=[httr magrittr selectr XML]; };
 rvgtest = derive { name="rvgtest"; version="0.7.4"; sha256="1lhha5nh8fk42pckg4ziha8sa6g20m0l4p078pjj51kz0k8929ng"; depends=[]; };
 rworldmap = derive { name="rworldmap"; version="1.3-1"; sha256="0wrg6ap39bq88sv5axxd90yyqafn77amk5429pxd9v5a2hdm3g8w"; depends=[fields maptools sp]; };
@@ -5874,7 +5887,7 @@ sac = derive { name="sac"; version="1.0.1"; sha256="1rl5ayhg5y84fw9w3zf43dijjlw9
 saccades = derive { name="saccades"; version="0.1-1"; sha256="138a6g3hjmcyvflpxx1lhgxnb8svrynplrjnvzij7c4bzkp8zip6"; depends=[zoom]; };
 sadists = derive { name="sadists"; version="0.2.1"; sha256="0m3rlbhgzl0xvx8bcaswbi9nsrgfhdmkywx7ynayl6q0lmslhk6a"; depends=[hypergeo orthopolynom PDQutils]; };
 sads = derive { name="sads"; version="0.2.1"; sha256="08rr3ixz6phrpdwpqk08sk8a5znggd84d7wc1zpm62kfppy0d2hc"; depends=[bbmle GUILDS MASS poilog VGAM]; };
-sae = derive { name="sae"; version="1.0-5"; sha256="05jvzq4cqb78pgdlxf8vlanx3v10n5njlw7g666nrnziy9ak8z4f"; depends=[MASS nlme]; };
+sae = derive { name="sae"; version="1.1"; sha256="1izww27cqd94yrfbszbzy44plznxsirzn0752ag7xw7qzm5ywp3d"; depends=[MASS nlme]; };
 sae2 = derive { name="sae2"; version="0.1-1"; sha256="0fbbh2s0gjhyhypaccnd37b5g2rhyzq7mrm6s0z36ldg1pzi4dd9"; depends=[MASS]; };
 saeSim = derive { name="saeSim"; version="0.7.0"; sha256="03zfw18fvx8blh9iijh3rnglg8zbsvd9dq3kqv6ajz3hwr90z29g"; depends=[dplyr functional ggplot2 MASS parallelMap spdep]; };
 saemix = derive { name="saemix"; version="1.2"; sha256="1whwn54iiapdfig6qpzji3z3skir6jrs34dq78zlynibgrg95hx6"; depends=[]; };
@@ -5883,8 +5896,9 @@ safeBinaryRegression = derive { name="safeBinaryRegression"; version="0.1-3"; sh
 safi = derive { name="safi"; version="1.0"; sha256="1km58w57kdmyfj4a97zhnjcka4q4pxm8r2br01qq2niaihpbzp98"; depends=[]; };
 sampSurf = derive { name="sampSurf"; version="0.7-3"; sha256="165y2z9bhf7cyrh177fk87apqpgzyn69gf53f9mmii931cyykihw"; depends=[boot raster rasterVis sp]; };
 sampleSelection = derive { name="sampleSelection"; version="1.0-2"; sha256="1hzvvwvqp6v9d6ldm17kx3g8pbgngw2pxklny0b3man47zh5jshc"; depends=[Formula maxLik miscTools systemfit]; };
+samplesize = derive { name="samplesize"; version="0.2-2"; sha256="1sfyzrws6zy3m5dqyp1hqs6y5znkxfpayznz59a54s03r8c7xizk"; depends=[]; };
 samplesize4surveys = derive { name="samplesize4surveys"; version="2.4.0.900"; sha256="199g2gsbv1w1acn7nnlv2wbrhq7lc1mx8vvs1w9a9a8dkxdmml0g"; depends=[TeachingSampling]; };
-sampling = derive { name="sampling"; version="2.6"; sha256="11r8p29kwc0ggycbv7sm1zmazmfm4p5207l764ad4znjib0cab6p"; depends=[lpSolve MASS]; };
+sampling = derive { name="sampling"; version="2.7"; sha256="0xp0djpgns2lbgshrpxcmqa7c180ds3ymqa5asyxxl74yiric7xi"; depends=[lpSolve MASS]; };
 samplingEstimates = derive { name="samplingEstimates"; version="0.1-3"; sha256="1srdchlpxksfdqhf5qdvl7nz0qsxkxww7hzqj0q71asbzlq3am3p"; depends=[samplingVarEst]; };
 samplingVarEst = derive { name="samplingVarEst"; version="0.9-9"; sha256="04wgsq3sh69iy8p07ch210p22n5mds7cxp5s6zggzamqpf0hpnw7"; depends=[]; };
 samplingbook = derive { name="samplingbook"; version="1.2.0"; sha256="1vynz6hsnz5d0vg66f8k67h24rb809k9chb4waymk6vwnp8lksz9"; depends=[pps sampling survey]; };
@@ -5900,16 +5914,18 @@ saves = derive { name="saves"; version="0.5"; sha256="1b4mfi2851bwcp0frx079h5yl6
 saws = derive { name="saws"; version="0.9-6.1"; sha256="0w40j6xczqs74z1z3na4510w06px7yn55s2mw9mddd6736l56fv1"; depends=[gee]; };
 sbgcop = derive { name="sbgcop"; version="0.975"; sha256="0f47mvwbsym4khwgl0ic3pqkw3jwdah9a48qi3q93d46p2xich61"; depends=[]; };
 sbioPN = derive { name="sbioPN"; version="1.1.0"; sha256="0yvg55xnkhm35hfl7rldy2grb26hm4a68jr4x9n45fs7hhdylxri"; depends=[]; };
+sbmSDP = derive { name="sbmSDP"; version="0.2"; sha256="1sl46lqi6w0s7ghv4bywhic56cm2vib3kawprga760m6igargx4y"; depends=[Rcpp RcppArmadillo]; };
 sca = derive { name="sca"; version="0.8-9"; sha256="024yxm1rlyz3hx9viv2nb6rapy938diaknc3nzkgq0ffky2gf0s3"; depends=[]; };
 scaRabee = derive { name="scaRabee"; version="1.1-3"; sha256="1yap3hi36f8hk93jn59nxrbgq8iw0xwkkm3pc2gb50cpcpaq41pd"; depends=[deSolve lattice neldermead]; };
 scagnostics = derive { name="scagnostics"; version="0.2-4"; sha256="0fhc7d2nfhm8w6s6z1ls6i8d7c90h4q7rb92rz8pgq3xh031hpcf"; depends=[rJava]; };
 scales = derive { name="scales"; version="0.2.5"; sha256="12xrmn1vh64dl46bq7n7pa427aicb2ifjrby9in3m32nyvir0kac"; depends=[dichromat labeling munsell plyr RColorBrewer Rcpp]; };
 scalreg = derive { name="scalreg"; version="1.0"; sha256="06iqij1cyiw55ijzk2byrwh3m5iwsra7clx8l4v69rc236q8zbdi"; depends=[lars MASS]; };
-scam = derive { name="scam"; version="1.1-8"; sha256="1190xdahr4cx50qn32lxqm3p8m9c3968qx6f5mpyicaw34j9whz4"; depends=[Matrix mgcv]; };
+scam = derive { name="scam"; version="1.1-9"; sha256="1hx8y324bgwvv888d34wq0nnmqalfh5f26b5n36saaizm4a12wyf"; depends=[Matrix mgcv]; };
 scape = derive { name="scape"; version="2.2-0"; sha256="0dgbh65fg6i5x4lpfkshn382zcc4jk1wp62pwd2l2f59pyfb92a3"; depends=[coda Hmisc lattice]; };
 scar = derive { name="scar"; version="0.2-1"; sha256="04x42414qxrz8c7xrnmpr00r46png2jy5giwicdx6gx8jwrkzhzs"; depends=[]; };
+scatterD3 = derive { name="scatterD3"; version="0.1.1"; sha256="1xrs1a68x29fyzg6a3frr3nlapi1k6nk3ndg54fm6f54k8hvxdf3"; depends=[htmlwidgets]; };
 scatterplot3d = derive { name="scatterplot3d"; version="0.3-35"; sha256="1w0r7cyz01rzmgcf2x7wa4xs88ga6fd67wksyjyzrh2pdcbc56yx"; depends=[]; };
-schoRsch = derive { name="schoRsch"; version="1.1"; sha256="0bi2vn9qr49yy3g45xgglqn1b5b6z8cbn9phzmqjc1v7rn80s5zg"; depends=[]; };
+schoRsch = derive { name="schoRsch"; version="1.2"; sha256="1dz4mws227a5h3kkmpnz06liy9n3k01ihvcxxwnj8283w3b23bci"; depends=[]; };
 scholar = derive { name="scholar"; version="0.1.2"; sha256="1h1a6psgmiifi7p87ar3fr0mcfmg44yh4683dmqxrxrfcvgaxvca"; depends=[plyr R_cache stringr XML]; };
 schoolmath = derive { name="schoolmath"; version="0.4"; sha256="06gcmm294d0bs5whvknrq48sk7li961lzy4bcncjg052zbbpn67x"; depends=[]; };
 schwartz97 = derive { name="schwartz97"; version="0.0.6"; sha256="0l34f30l75zrg3n377jp0cw7m88cqkgzy6ql78mrx8ra88aspfzn"; depends=[FKF mvtnorm RUnit]; };
@@ -5924,15 +5940,16 @@ scrime = derive { name="scrime"; version="1.3.3"; sha256="1vp7ai10m0f3s0hywyqh0y
 scriptests = derive { name="scriptests"; version="1.0-15"; sha256="1f55rnz4zbywyn79l2ac2600k95fwxgnyh1wzxvyxjh4qcg50plv"; depends=[]; };
 scrm = derive { name="scrm"; version="1.6.0-2"; sha256="1a3m56j4ca526mjhc7h0967k5bja336dw1bpna119l5yic6hkc1n"; depends=[Rcpp]; };
 scrypt = derive { name="scrypt"; version="0.1.0"; sha256="1hc1rziigwggdx2pvklldkw88mdzbwa8b8a2a0ip4cm1w6flsl9n"; depends=[Rcpp]; };
-scuba = derive { name="scuba"; version="1.7-0"; sha256="11mdc8pj552ag36ib4sfbjv8r0psa6wnb13spz0v3rbaslz25hpw"; depends=[]; };
-sda = derive { name="sda"; version="1.3.6"; sha256="1igdkgpxlni4d8h5k912aikbd66jqkabzq144xlgd2vp3kcbw4ly"; depends=[corpcor entropy fdrtool]; };
+scuba = derive { name="scuba"; version="1.8-0"; sha256="1hlgvbcx7xmpaaszyqvhdwvwmf8z209jkf6aap205l3xkkc692c4"; depends=[]; };
+sdPrior = derive { name="sdPrior"; version="0.2"; sha256="12aiddnwhlvvnh9f5jivrs4ml0g6hm9pg828xk39d8kzz43alwzg"; depends=[caTools GB2 MASS]; };
+sda = derive { name="sda"; version="1.3.7"; sha256="1v0kp6pnjhazr8brz1k9lypchz8k8gdaby8sqpqzjsj8klghlcjp"; depends=[corpcor entropy fdrtool]; };
 sdcMicro = derive { name="sdcMicro"; version="4.5.0"; sha256="1cz34g6si7f8kgybcvcsr0lkcspqp3vrkvfqsfdjd0mb8lv5pbjj"; depends=[brew car cluster data_table e1071 knitr MASS Rcpp robustbase sets xtable]; };
 sdcMicroGUI = derive { name="sdcMicroGUI"; version="1.2.0"; sha256="0bhrpric17y1ljm18a00i6bkxfq1cpljfkib8qbb4jyj5s50f3ps"; depends=[cairoDevice foreign gWidgets gWidgetsRGtk2 Hmisc sdcMicro vcd]; };
 sdcTable = derive { name="sdcTable"; version="0.18.1"; sha256="18l6d6q6pawvswj1v9mfmcg4m94dkp38yd2mnndz9l7qmvf6n7kx"; depends=[data_table lpSolveAPI Rcpp Rglpk stringr]; };
 sdcTarget = derive { name="sdcTarget"; version="0.9-11"; sha256="18cf276mh1sv16xn0dn8par4zg8k7y8710byxiih6db4i616fjpi"; depends=[doParallel foreach magic tuple]; };
 sddpack = derive { name="sddpack"; version="0.9"; sha256="1963l8jbfwrqhqcpif73di9i5mb996r4f8smjyil6l7sdir7cg9l"; depends=[]; };
 sde = derive { name="sde"; version="2.0.13"; sha256="194dkwrww9win5chhlffjv1xkhpxx2bcv6hf81xaqk7pdf7ifj80"; depends=[fda MASS zoo]; };
-sdef = derive { name="sdef"; version="1.5"; sha256="1xmx3nfjjfh6zw1vq7iip4rnshh40azja83xyvnz04jcv574vhxm"; depends=[]; };
+sdef = derive { name="sdef"; version="1.6"; sha256="1y1l5fl7lh636kyvc2hwssdnifl055nrz3riplj4qqw88lkm1mk8"; depends=[]; };
 sdmvspecies = derive { name="sdmvspecies"; version="0.3.1"; sha256="1rpbj55598862vb4bwrvcbskm10xibsvx58fpvkn58zbm6ab2534"; depends=[ggplot2 GPArotation psych raster]; };
 sdnet = derive { name="sdnet"; version="2.03.3"; sha256="1884pil3brm7llczacxda6gki501ddyc5m8ggqjix64kbvw37slv"; depends=[]; };
 sdprisk = derive { name="sdprisk"; version="1.1-3"; sha256="1rwzi112fjckzxmhagpg60qm9a35fqx8g8xaypxsmnml6q00ysiq"; depends=[numDeriv PolynomF rootSolve]; };
@@ -5951,23 +5968,23 @@ secrlinear = derive { name="secrlinear"; version="1.0.5"; sha256="084d0spshf3lh1
 seedy = derive { name="seedy"; version="1.2"; sha256="1m800b2faaih4xjsl3jwrqd177jjygbvrf9mb1h84hdzy095b5c0"; depends=[]; };
 seeg = derive { name="seeg"; version="1.0"; sha256="1d45vl075p4qbd74gpaa8aw1h82p9n633fym10yp9bmcv4gwksg6"; depends=[car sgeostat spatstat]; };
 seem = derive { name="seem"; version="1.0"; sha256="0cjdi9c89bqvrx9gzxph958cfqicc1qfnzsair0gvsk3cxsrw6bf"; depends=[]; };
-seewave = derive { name="seewave"; version="1.7.6"; sha256="1sh2i9hb8v0awhczvkj803lmdvg5p1fla685xb3s2a3if1q5zc5i"; depends=[fftw tuneR]; };
+seewave = derive { name="seewave"; version="2.0.1"; sha256="1xp3frkvzhd6qyp5f3y2w98p5j7adzgn5bj6gzs39cgwb3019zl9"; depends=[tuneR]; };
 seg = derive { name="seg"; version="0.5-1"; sha256="0gsdbq7b5wpknhlilrw771japr63snvx4vpirvzph4fjyby1c7rg"; depends=[sp splancs]; };
 segmag = derive { name="segmag"; version="1.2.2"; sha256="130saznhssg0qsc34fcw80x92mmqhjgizrb4fxpjsg7a8jjrclp8"; depends=[Rcpp]; };
 segmented = derive { name="segmented"; version="0.5-1.1"; sha256="0rkbhg8wwqk08jfd29sh4ifx427kmd4mfqrssllckha9hcglqhz7"; depends=[]; };
 seismic = derive { name="seismic"; version="1.0"; sha256="02d11c3filzghi8cvryikaidmk40d4z3qxsqs7bjdhxyf814caw8"; depends=[]; };
 seismicRoll = derive { name="seismicRoll"; version="1.0.1"; sha256="1lls2gbx994j7y3kwpf00ngga5qlzqxwc3cy9x21gy9iq2s8hn0x"; depends=[Rcpp]; };
-selectMeta = derive { name="selectMeta"; version="1.0.7"; sha256="1ibiiddl9km8dahfc3kdpl42k43fx4mqgqibxgv5q8zbcp2829p9"; depends=[DEoptim]; };
+selectMeta = derive { name="selectMeta"; version="1.0.8"; sha256="0i0wzx5ggd60y26lnn4qk4n8h27ahll9732026ppks1djx14cdy0"; depends=[DEoptim]; };
 selectiongain = derive { name="selectiongain"; version="2.0.40"; sha256="1xzvz747242wfv789dl3gqvgbc8l1c4i2r3p95766ypcjw51j55d"; depends=[mvtnorm]; };
 selectr = derive { name="selectr"; version="0.2-3"; sha256="1ppm1f6mwfwbq92iwacyjn46k1d8148j4zykmjvw8as6c8blgap1"; depends=[stringr XML]; };
 selectspm = derive { name="selectspm"; version="0.1"; sha256="0bihyjaacpyjnm5vznix8krw2sqmy62in33hmb5yj4yidwz1gpv0"; depends=[ecespa spatstat]; };
-selfea = derive { name="selfea"; version="1.0"; sha256="02ncccyjgdpp9hkd278jg8x1c3566fqhfmmh423596b1slzs8gqm"; depends=[MASS plyr pwr]; };
+selfea = derive { name="selfea"; version="1.0.1"; sha256="0zyxbd5vg8nhigill3ndcvavzbb9sbh5bz6yrdsvzy8i5gzpspvx"; depends=[ggplot2 MASS plyr pwr]; };
 selfingTree = derive { name="selfingTree"; version="0.2"; sha256="18ylxmg2ms4ccgm4ahzfl65x614wiq5id7zazjjz5y75h8gs7gzj"; depends=[foreach]; };
 sem = derive { name="sem"; version="3.1-6"; sha256="1gx0j3ignpmgy3qvnp0qjmhlzbxj0wjfr6jfs9d29cnq8b38p73c"; depends=[boot DiagrammeR MASS matrixcalc mi]; };
 semGOF = derive { name="semGOF"; version="0.2-0"; sha256="1lsv72yaza80jqadmah7v2cpfqfay57y12hcz6brvia6bmr5qagb"; depends=[MASS matrixcalc sem]; };
 semPLS = derive { name="semPLS"; version="1.0-10"; sha256="0q5linjyv5npkw4grx3vq58iq2q1grf06ikivhkg8w7rvb7pqn6b"; depends=[lattice]; };
 semPlot = derive { name="semPlot"; version="1.0.1"; sha256="0sdp970qb4mz5vzncfmqxvg1z12gmiyqi3yaz9x2drm3rgzavy83"; depends=[colorspace corpcor igraph lavaan lisrelToR plyr qgraph rockchalk sem XML]; };
-semTools = derive { name="semTools"; version="0.4-6"; sha256="1rxs6kwfc4bp273i9p25v4mc2sm91fkgsg178ifd4d3235xawcvz"; depends=[lavaan]; };
+semTools = derive { name="semTools"; version="0.4-9"; sha256="1fiw6ajksbzsvrfs5wq7l4bwnp8jd068w6ifklv3jwsbyqa4lvkf"; depends=[lavaan]; };
 semdiag = derive { name="semdiag"; version="0.1.2"; sha256="0kjcflw7dn907zx6790w7hnf5db6bf549whfsc0c2r173kf13irp"; depends=[sem]; };
 semiArtificial = derive { name="semiArtificial"; version="1.2.0"; sha256="11pwdqpsf5d5g74s2b8ixmrh2khkha3d4akzlkn652s98qr55dpc"; depends=[cluster CORElearn fpc MASS mclust nnet RSNNS timeDate timeSeries]; };
 semisupKernelPCA = derive { name="semisupKernelPCA"; version="0.1.5"; sha256="1v8wdq63b1gqicj8c9a24k0w7cc0bkg0mnc9z5mklsfcl7g0g6k9"; depends=[datautils irlba]; };
@@ -5983,23 +6000,23 @@ sensory = derive { name="sensory"; version="1.0"; sha256="0mfjj3lsx5i8bc8ikhqwyc
 separationplot = derive { name="separationplot"; version="1.1"; sha256="0qfkrk8n6jj8l7ywngwsaikfwmd9hbrpr43x0l9wkjjp1asgs5l6"; depends=[]; };
 seqCBS = derive { name="seqCBS"; version="1.2"; sha256="1kywi3kvvl9y6nm7cwf6fj8gz9gzznp5va336g1akzgy77k82d8v"; depends=[clue]; };
 seqDesign = derive { name="seqDesign"; version="1.1"; sha256="1694swd8ik9fbiflmnw4xpq82kq18rqzkw0dv5pvq30c47xjgamv"; depends=[survival xtable]; };
-seqMeta = derive { name="seqMeta"; version="1.5"; sha256="1igag08qkfvkx83w6jjyfmjpxil9wvag1yfnxp3pqbglj9l99pmn"; depends=[CompQuadForm coxme Matrix survival]; };
+seqMeta = derive { name="seqMeta"; version="1.6.0"; sha256="1ha6vsaapac6p18r5df2z39vzsb9qr6kyb9g6h53km588zk280zl"; depends=[CompQuadForm coxme Matrix survival]; };
 seqPERM = derive { name="seqPERM"; version="1.0"; sha256="1i8ai4gxybh08wxjh96m6xlqxhh7ch0xihjs879snmy4zqfi0pap"; depends=[]; };
 seqRFLP = derive { name="seqRFLP"; version="1.0.1"; sha256="1i98hm8wgwr8b6hd237y2i9i0xgn35w4n2rxy4lqc5zq71gkwkvk"; depends=[]; };
 seqinr = derive { name="seqinr"; version="3.1-3"; sha256="0bbjfwbqg74wsamb3iz01g0ssdpdpg65gh00y9xlnpk4wb990n4n"; depends=[ade4]; };
-seqminer = derive { name="seqminer"; version="4.2"; sha256="026minlmqf4n6pznkzkm6daqa7pj7hmis0i2azdy2m56a9hkj52z"; depends=[stringr]; };
+seqminer = derive { name="seqminer"; version="4.5"; sha256="18s2gvc55fx3x4bnfa580gqhrc62pz4az2i9dvbpnnk4aazj3ny8"; depends=[]; };
 seqmon = derive { name="seqmon"; version="0.2"; sha256="075hc6vgl1w3nisrihf5w6mkkg9q601jsqxm9hk9yagyvvd7d78w"; depends=[]; };
 sequences = derive { name="sequences"; version="0.5.9"; sha256="17571m525b6a3k4f0m936wfq401181gx1fpb7x4v0fhaldzdmk3a"; depends=[Rcpp]; };
 sequenza = derive { name="sequenza"; version="2.1.1"; sha256="0vrdmfy8qyzjflyl5skcy9mazl56py5gzb1kn1xh2hiv3mshdrfx"; depends=[copynumber squash]; };
-seriation = derive { name="seriation"; version="1.1-0"; sha256="0lbkv005ws4khwp12mygrpvxxdz8g5a7q2xl62k43sz6vj7cp8cn"; depends=[cluster colorspace gclus gplots MASS registry TSP]; };
+seriation = derive { name="seriation"; version="1.1-1"; sha256="127dg4n85phaj9r4y8898clh6sm78rk8pjk6v6zxfy79f7a1k96d"; depends=[cluster colorspace gclus gplots MASS registry TSP]; };
 seroincidence = derive { name="seroincidence"; version="1.0.4"; sha256="0m3hlbv3277qyhqi3liwbna7czd6kdc7gqaxc7xn5x8d2hsc45hk"; depends=[]; };
 servr = derive { name="servr"; version="0.2"; sha256="0gah99snaj8lk5zfzbxi3jwvpnlff9diz9gqv4qalfxpmb7fp6lc"; depends=[httpuv jsonlite mime]; };
 sesem = derive { name="sesem"; version="1.0.1"; sha256="0s4xkv6bc5nxhj09mk9agnj11b9h7swccs9jrn4lg3fy12vqhf5a"; depends=[gplots lavaan mgcv]; };
 session = derive { name="session"; version="1.0.3"; sha256="04mcy1ac75fd33bg70c47nxqxrmqh665m9r8b1zsz5jij1sbl8q5"; depends=[]; };
 setRNG = derive { name="setRNG"; version="2013.9-1"; sha256="02198cikj769yc32v8m2qrv5c01l2fxmx61l77m5ysm0hab3j6hs"; depends=[]; };
-sets = derive { name="sets"; version="1.0-14"; sha256="1wfg4yc3p7zqcj2z3lb5knv6l3lw4pf20s3rkpz4yj4nsb41zs4g"; depends=[]; };
+sets = derive { name="sets"; version="1.0-15"; sha256="12qzgigjsz6y52qnxhx5yv91y38crlyivnzcijwhfix9lbyynrbg"; depends=[]; };
 settings = derive { name="settings"; version="0.2.2"; sha256="0bssy42kkb1aww9yndkyw3bj1jn3akvwsvhj0cz16r3a7jfcav7h"; depends=[]; };
-setwidth = derive { name="setwidth"; version="1.0-3"; sha256="1s6m24kmkafscgibgfldm70m57bv4gs0m7fdki18nwdi1rvwpkbf"; depends=[]; };
+setwidth = derive { name="setwidth"; version="1.0-4"; sha256="0i565phbfj0rff13nyz6sy8cn4cch4fcjfgkns3z6c94w11b4703"; depends=[]; };
 severity = derive { name="severity"; version="2.0"; sha256="1mp19y2pn7nl9m8xfljc515kk5dirv0r2kypazpmd956lcivziqq"; depends=[]; };
 sfa = derive { name="sfa"; version="1.0-1"; sha256="1acqxgydf8j5csdkx0yf169x3yaa31r0ccdrqarh6vj1hacm89ad"; depends=[]; };
 sfsmisc = derive { name="sfsmisc"; version="1.0-27"; sha256="16hkm0ylwipc1zqsi8fiwyqvl9hpjgl7kyvgamibxlbp1y669qgm"; depends=[]; };
@@ -6028,7 +6045,7 @@ shinyRGL = derive { name="shinyRGL"; version="0.1.0"; sha256="07llg1yg5vmsp89jk6
 shinyTree = derive { name="shinyTree"; version="0.2.2"; sha256="08n2s6pppbxn23ijp6vms609p4qwlmfh9g0k5hdfqsqxjrz1nndi"; depends=[shiny]; };
 shinybootstrap2 = derive { name="shinybootstrap2"; version="0.2.1"; sha256="17634l3swlvgj1sv56nvrpgd6rqv7y7qjq0gygljbrgpwmfj198c"; depends=[htmltools jsonlite shiny]; };
 shinydashboard = derive { name="shinydashboard"; version="0.5.0"; sha256="1q2g0vdid14id489ybfhf6x67bmc4g2zhamw3vx9piqvdlfmnqg5"; depends=[htmltools shiny]; };
-shinyjs = derive { name="shinyjs"; version="0.0.6.2"; sha256="0z9lw680bhfzm40j1ffy6y3vfxjkz9457w62rjrw32nssv8vjqvs"; depends=[shiny]; };
+shinyjs = derive { name="shinyjs"; version="0.0.7.0"; sha256="0yrv7qy7wbsi45gqia3vl0s7mi758j7qbkmh2hdbfs0aj7jxgr7y"; depends=[shiny]; };
 shinythemes = derive { name="shinythemes"; version="1.0.1"; sha256="0wv579cxjlnd7wkfqzy2x3qk7d1abql1nhw10rx1c4c808vsylkw"; depends=[shiny]; };
 shopifyr = derive { name="shopifyr"; version="0.28"; sha256="1ypqgiqimdwj9fjy9ykk42rnkipb4cvdxy5m9z9jklvk5a7cgrml"; depends=[R6 RCurl RJSONIO]; };
 shotGroups = derive { name="shotGroups"; version="0.6"; sha256="0khcgzli6114yqrglmsvhr8rwkkkwdkd06b50isbc24vpv6xbfx9"; depends=[boot coin CompQuadForm energy KernSmooth mvoutlier robustbase]; };
@@ -6046,7 +6063,7 @@ sig = derive { name="sig"; version="0.0-5"; sha256="084wwpj5mnmq4k98ijbv23z80sj4
 sigclust = derive { name="sigclust"; version="1.1.0"; sha256="0151v7lr4n4yyn93j0s06gzc9jh9xhdgvfw6kvpfy24jl6wdii7g"; depends=[]; };
 sigloc = derive { name="sigloc"; version="0.0.4"; sha256="13v2dlgsbcsqqm8yxls62i7r3sk8m3c78jv8f9lgdihq5pjnd9zp"; depends=[ellipse nleqslv]; };
 signal = derive { name="signal"; version="0.7-5"; sha256="0v6zmy25ikkrc2ravaj7k1qzxm3zdvj6g0d55lkyjv7pb3kl5m1k"; depends=[MASS]; };
-signal_hsmm = derive { name="signal.hsmm"; version="1.2.1"; sha256="0nxhksvwkidmp5x27hxmwxbv747lrwa19b4vi6dx72hny8prgvpc"; depends=[biogram seqinr shiny]; };
+signalHsmm = derive { name="signalHsmm"; version="1.3"; sha256="0hx389ibk473mfycc8sj96ppz9hri4x9ni05fv32zvzxy8b9i9jv"; depends=[biogram Rcpp seqinr shiny]; };
 signmedian_test = derive { name="signmedian.test"; version="1.5.1"; sha256="05n7a4h2bibv2r64cqschzhjnm204m2lm1yrwxvx17cwdp847hkm"; depends=[]; };
 simFrame = derive { name="simFrame"; version="0.5.3"; sha256="154d4k6x074ib813dp42l5l8v81x9bq2c8q0p5mwm63pj0rgf5f3"; depends=[lattice Rcpp]; };
 simMSM = derive { name="simMSM"; version="1.1.41"; sha256="04icijrdc269b4hwbdl3qz2lyxcxx6z63y2wbak1884spn6bzbs8"; depends=[mvna survival]; };
@@ -6064,25 +6081,26 @@ simexaft = derive { name="simexaft"; version="1.0.7"; sha256="13w9m35qrrp8kkz4gq
 simone = derive { name="simone"; version="1.0-2"; sha256="071krim64s7fjwvwq7bjr0pw33mw9am9wpyypcy4gs7g1hj8wcir"; depends=[mixer]; };
 simpleNeural = derive { name="simpleNeural"; version="0.1.1"; sha256="0rm6kvz1mppvgcvwsgg3nz6ci37l95ins64g0jh4rw6lfmy0grjc"; depends=[]; };
 simpleboot = derive { name="simpleboot"; version="1.1-3"; sha256="1qprjisfflhzg8ll12p3q1zcfdiyc45glic2j9cw9nhx5rb065fk"; depends=[boot]; };
-simplexreg = derive { name="simplexreg"; version="1.0"; sha256="144kljh968i7n2d21r4204i4h952mfrkfc8b5r6x760msgjphxvh"; depends=[Formula plotrix]; };
+simplexreg = derive { name="simplexreg"; version="1.1"; sha256="0iyrkynhrkdix27r105wv0yn5yc8cgrf6hlv4byi9mz6y05f9i7p"; depends=[Formula plotrix]; };
 simrel = derive { name="simrel"; version="1.0-1"; sha256="0905rjqh8c08vyg090h0i7sx89vdryignslldzfz2r5yrszl4ga8"; depends=[FrF2 sfsmisc]; };
 simsalapar = derive { name="simsalapar"; version="1.0-5"; sha256="1z3dwylfrl08pq2k5ppfma3ijh356qc7wwdvgyp3wmw1bcq1amyf"; depends=[colorspace gridBase sfsmisc]; };
-simsem = derive { name="simsem"; version="0.5-8"; sha256="1kir1c0g5xb4gzmpvx13qp071b3d5v0br3093q394wzp22d816xk"; depends=[lavaan]; };
+simsem = derive { name="simsem"; version="0.5-11"; sha256="0k93wck82wpxrckf7g8x7iik0134wmz5n8y2d086lb24ic2231zz"; depends=[lavaan]; };
 siplab = derive { name="siplab"; version="1.1"; sha256="1b5drhla4p7n1y1cp7kqwqzw0b286kgij9j6wsks5vjgy5qfal1x"; depends=[spatstat]; };
 sirad = derive { name="sirad"; version="2.0-7"; sha256="009icj1jil757vvsf88sgmdz40swrx1qvrhnx7wwj7p3dlh78pvw"; depends=[ncdf raster RNetCDF zoo]; };
-sirt = derive { name="sirt"; version="1.7-0"; sha256="12z1gk92rll5lxycv3gvz6y5ia5pbysq5fr3y62xn3wwgm2vrpch"; depends=[CDM coda combinat gtools ic_infer igraph lavaan lavaan_survey MASS Matrix mirt mvtnorm pbivnorm psych qgraph Rcpp RcppArmadillo semPlot sfsmisc sm survey TAM]; };
+sirt = derive { name="sirt"; version="1.8-9"; sha256="19kkn2a18kpv6vk45xbi3662mfbmcrz06aq994fzynar2nbix3f0"; depends=[CDM coda combinat gtools ic_infer igraph lavaan lavaan_survey MASS Matrix mirt mvtnorm pbivnorm psych qgraph Rcpp RcppArmadillo semPlot sfsmisc sm survey TAM]; };
 sisVIVE = derive { name="sisVIVE"; version="1.1"; sha256="1p1l07pgd88ap3bp0zwinnzda07pfg6cn92ync2pkqn5l0gmfxbs"; depends=[lars]; };
 sisus = derive { name="sisus"; version="3.9-13"; sha256="0lz9ww07dvdx6l3k5san8gwq09hycc3mqwpgzmr2ya9z8y27zadr"; depends=[coda gdata gtools MASS moments polyapost rcdd RColorBrewer]; };
 sitar = derive { name="sitar"; version="1.0.2"; sha256="0z9r3z512s0gpkcpdbi45qdl40rp4jacpm9k0c5pjilwiga6p07z"; depends=[nlme quantreg]; };
 sitools = derive { name="sitools"; version="1.4"; sha256="0c0qnvsv06g6v7hxad96fkp9j641v8472mbphvaxa60k3xc7ackb"; depends=[]; };
 sivipm = derive { name="sivipm"; version="1.0-0"; sha256="1r548kfsi90rzisx37nw3w9vwj3gs4ck5zhwlskbdzgigb78spfp"; depends=[seqinr]; };
-sjPlot = derive { name="sjPlot"; version="1.8.1"; sha256="0na5c9fd4irnf1vhqhxgdhwpqyqfsqdxz47gx65r9qq294bhwc75"; depends=[car dplyr ggplot2 MASS psych scales sjmisc tidyr]; };
+sjPlot = derive { name="sjPlot"; version="1.8.2"; sha256="1fnqsayg31gk0qggs3024i4nrdardfqqsyggf8l8c6zamcx680fa"; depends=[car dplyr ggplot2 MASS psych scales sjmisc tidyr]; };
 sjdbc = derive { name="sjdbc"; version="1.5.0-71"; sha256="0i9wdfadfcabayq78ilcn6x6y5csazbsgd60vssa2hdff0ncgvk1"; depends=[rJava]; };
-sjmisc = derive { name="sjmisc"; version="1.0.2"; sha256="1hgmm5yjgnd2n3k0gjcv58pv0wxzx5pia38ycjix4vyjgbp01kq0"; depends=[MASS]; };
+sjmisc = derive { name="sjmisc"; version="1.0.3"; sha256="0yar8nr1jrazjngaxnawdhh75l5z47rc84nzvv8yz8kxb46pmgy6"; depends=[MASS]; };
 skatMeta = derive { name="skatMeta"; version="1.4.3"; sha256="0bknv066ya4yl4hl4y02d9lglq2wkl9c2j1shzg3d64dg4sjvbak"; depends=[CompQuadForm coxme Matrix survival]; };
 skda = derive { name="skda"; version="0.1"; sha256="0a6mksr1d0j3pd0kz4jb6yh466gvl4fkrvgvnlmvivpv6b2gqs3q"; depends=[]; };
+skellam = derive { name="skellam"; version="0.1.3"; sha256="1w46ri4k8xg07phl7j4cb5b3qndplr027n047wzc15xcjliggg89"; depends=[]; };
 skewt = derive { name="skewt"; version="0.1"; sha256="1xm00zfzjv53cq9drfcx7w2ri5dwsq7kajrk2hc1mvw0b6s4x2ix"; depends=[]; };
-skmeans = derive { name="skmeans"; version="0.2-6"; sha256="02zw2y7s13hb6mx9w2yr5s2v1p5yxg3k67bhrl92g9n2jkbim3ni"; depends=[clue cluster slam]; };
+skmeans = derive { name="skmeans"; version="0.2-7"; sha256="007069ikrqcjj7yh4xc3jx85rj38av817lhmcw9gdnz7d0dr5h06"; depends=[clue cluster slam]; };
 sla = derive { name="sla"; version="0.1"; sha256="0fr5n65ppwsh9z7a6rma9ak0bl8x3nz7v25lij7wb5nrf3sl74yb"; depends=[]; };
 slackr = derive { name="slackr"; version="1.2"; sha256="1ymj3x52wyp0mp41xnnycg0vhdmv8whimwk1hzfsqr30pccnvn9j"; depends=[data_table ggplot2 httr jsonlite]; };
 slam = derive { name="slam"; version="0.1-32"; sha256="000636dwj4kmj5w1w5s6bqixh78m7262y3fgizj7rfhcnc2gz7ad"; depends=[]; };
@@ -6116,7 +6134,7 @@ smoothSurv = derive { name="smoothSurv"; version="1.5-2"; sha256="07yr97nzp4mfj3
 smoother = derive { name="smoother"; version="1.1"; sha256="0nqr1bvlr5bnasqg74zmknjjl4x28kla9h5cxpga3kq5z215pdci"; depends=[TTR]; };
 smoothie = derive { name="smoothie"; version="1.0-1"; sha256="12p4ig8fbmlsby5jjd3d27njv8j7aiwx0m2n1nmgvjj0n330s1kj"; depends=[]; };
 smoothmest = derive { name="smoothmest"; version="0.1-2"; sha256="14cri1b6ha8w4h8m26b3d7qip211wfv1sywgdxw3a6vqgc65hmk5"; depends=[MASS]; };
-smoothtail = derive { name="smoothtail"; version="2.0.3"; sha256="0yr3j5mq1h9pd72kyi9z6wzly9cqkscim814yi710y79l03gp0fd"; depends=[logcondens]; };
+smoothtail = derive { name="smoothtail"; version="2.0.4"; sha256="0wbz9r9a7a3pjkdrsxhkjfm2qrbz4jrpsx4s1vm3kz7czkh55yg7"; depends=[logcondens]; };
 sms = derive { name="sms"; version="2.3"; sha256="0grxyp590hj2rvw1fw3yidzkl8nqqp5a14bp9xfpdph2nyas61qq"; depends=[doParallel foreach]; };
 smss = derive { name="smss"; version="1.0-1"; sha256="17a0x92hxzn212yiz87n7ssyi3bdhnyawxk1kkmk46q1ss22a1pm"; depends=[]; };
 sn = derive { name="sn"; version="1.2-2"; sha256="1fsl2qjgk7lcjxszdfs7s159qwy6gyg7bsxpfg0l5rcf2mlbwf8m"; depends=[mnormt numDeriv]; };
@@ -6125,7 +6143,7 @@ snapshot = derive { name="snapshot"; version="0.1.2"; sha256="0cif1ybxxjpyp3spnh
 snht = derive { name="snht"; version="1.0.2"; sha256="1rs9q8fmvz3x21ymbmgmgkqr7hqf3ya3xb33zj31px799jlldpb9"; depends=[ggplot2 gridExtra mgcv plyr reshape zoo]; };
 snipEM = derive { name="snipEM"; version="1.0"; sha256="0f98c3ycl0g0l3sgjgk7xrjp6ss7n8zzlyzvpcb6agc60cnw3w03"; depends=[GSE MASS mvtnorm Rcpp RcppArmadillo]; };
 snow = derive { name="snow"; version="0.3-13"; sha256="1habq43ncac9609xky3nqfkbq52cz36dg8jbdihag269z1kazdnf"; depends=[]; };
-snowFT = derive { name="snowFT"; version="1.3-0"; sha256="10hhhzzzyz1ph7c8k08s79h4pdwq4jk8bh47y37ww0yjq0fd6gik"; depends=[snow]; };
+snowFT = derive { name="snowFT"; version="1.4-0"; sha256="0gw2kn80jh1a6sg6ni9kj6ikvyq29c9dmx52k9m6gzcfpa7l0qbk"; depends=[rlecuyer snow]; };
 snowfall = derive { name="snowfall"; version="1.84-6"; sha256="1n9v9m4c02pspgkxfmq7zdk41s2vjcsk06b0kz9km4xy1x7k0hsg"; depends=[snow]; };
 snp_plotter = derive { name="snp.plotter"; version="0.5.1"; sha256="16apsqvkah5l0d5qcwp3lq2jspkb6n62wzr0wskmj84jblx483vv"; depends=[genetics]; };
 snpEnrichment = derive { name="snpEnrichment"; version="1.6.3"; sha256="0hg1cgyr4nlrqfv60aky8ljwh46ldslca3jmb6v6criyz6knqdv3"; depends=[snpStats]; };
@@ -6139,7 +6157,7 @@ softImpute = derive { name="softImpute"; version="1.4"; sha256="07cxbzkl08q58m14
 softclassval = derive { name="softclassval"; version="1.0-20150416"; sha256="1zrf0nmyy4pfs4dzardghzznw1ahl21w4nykfh2pp8il4dpi21fs"; depends=[arrayhelpers svUnit]; };
 soil_spec = derive { name="soil.spec"; version="2.1.4"; sha256="129iqr6fdvlchq56jmy34s6qc2j5fcfir6pa5as5prw0djyvbdv0"; depends=[GSIF hexView KernSmooth pls sp wavelets]; };
 soilDB = derive { name="soilDB"; version="1.5-4"; sha256="1n8ybryrg88m12qb6bwiqs04dxgbs4nv8ay27d2vi0xrkqhs99k2"; depends=[aqp Hmisc plyr RCurl sp XML]; };
-soilphysics = derive { name="soilphysics"; version="2.3"; sha256="1d64jaw5ra1l0za2kpigqfdf52a5zrxy9j9g2g7f5yffqsp0jwb5"; depends=[MASS rpanel]; };
+soilphysics = derive { name="soilphysics"; version="2.4"; sha256="0mxh9jv7klk85zb30agg9c60d0y6v7rxapmvmmkc985ih94r5685"; depends=[MASS rpanel]; };
 soilprofile = derive { name="soilprofile"; version="1.0"; sha256="0sdfg6m2m6rb11hj017jx2lzcgk6llb01994x749s0qhzxmvx9mb"; depends=[aqp lattice munsell splancs]; };
 soiltexture = derive { name="soiltexture"; version="1.3.3"; sha256="1a0j10f6mxwrslqd4fvc1nqvsh47ly1nyhc6l0qq1iz6ffqd37mx"; depends=[MASS sp]; };
 soilwater = derive { name="soilwater"; version="1.0.1"; sha256="08rz1i5dsgwfvfd4sl5x9j970v82v3kny0rqg1zbdnr53vp2xc7j"; depends=[]; };
@@ -6155,10 +6173,10 @@ somplot = derive { name="somplot"; version="1.6.4"; sha256="06c8p2lqz3yxmxdl7ji8
 sonicLength = derive { name="sonicLength"; version="1.4.4"; sha256="1v46xzx3jxxxs2biyrq6xbv2lhpz1i95la93hj6dl4jfyikmx0im"; depends=[]; };
 soobench = derive { name="soobench"; version="1.0-73"; sha256="1y2r061pd4kr0kdgp8db3qy2aj07jdiyvy2py4fmwg6b8pcf9y0l"; depends=[]; };
 sortinghat = derive { name="sortinghat"; version="0.1"; sha256="1wrxwhdp3gj1ra0rgldnmc0w019bnjb6z9j20c5p1ab09x4dmlny"; depends=[bdsmatrix MASS mvtnorm]; };
-sorvi = derive { name="sorvi"; version="0.7.20"; sha256="1cd0lg74lfdbkp314i40asc3vshs1acb20wz1cxzg62vyz6ia055"; depends=[ggplot2 plyr RColorBrewer reshape XML]; };
+sorvi = derive { name="sorvi"; version="0.7.26"; sha256="19lfrc4bdiljs437w3a2bpf7abnkv0934dh929bbj2w1w8rzghjn"; depends=[dplyr ggplot2 RColorBrewer reshape2]; };
 sos = derive { name="sos"; version="1.3-8"; sha256="0vcgq8hpgdnlmkxc7qh1jqigr0gvm9x3w4ijbhma7x4i5fx3c2il"; depends=[brew]; };
 sos4R = derive { name="sos4R"; version="0.2-11"; sha256="0r4lficx8wr0bsd510z4cp6la32xf928rsiznbywpxghnypsrcgg"; depends=[RCurl sp XML]; };
-sotkanet = derive { name="sotkanet"; version="0.9.10"; sha256="0nshd6caxxayr7w39d6ildz42aarr3ff8iyfpwjd544yhblkj7jh"; depends=[ggplot2 RCurl rjson]; };
+sotkanet = derive { name="sotkanet"; version="0.9.14"; sha256="11yly63kda8qrj0hkbd5y4zclvqazjvg2cv1a2g83sskd15zxxgj"; depends=[RCurl rjson]; };
 soundecology = derive { name="soundecology"; version="1.3"; sha256="1kcmsas359xcwqd0lxffr5p996jikqdag6idibq57qb6rnz3hgfz"; depends=[ineq oce pracma seewave tuneR vegan]; };
 source_gist = derive { name="source.gist"; version="1.0.0"; sha256="03bv0l4ccz9p41cjw18wlz081vbjxzfgq3imlhq3pgy9jdwcd8fp"; depends=[RCurl rjson]; };
 sp = derive { name="sp"; version="1.1-1"; sha256="1485jylvwbf99snbmp0xs13h5wlvfgwf04cbny4zgn43nipsvsik"; depends=[lattice]; };
@@ -6201,25 +6219,25 @@ spartan = derive { name="spartan"; version="2.2.1"; sha256="1syrvx3gmgsi3f49j27z
 spatcounts = derive { name="spatcounts"; version="1.1"; sha256="0rp8054aiwc62r1m3l4v5dh3cavbs5h2yb01453bw9rwis1pj2qm"; depends=[]; };
 spate = derive { name="spate"; version="1.4"; sha256="1cr63qm3hgz6viw6ynzjv7q5ckfsan7zhbp224gz4cgx5yjg0pn3"; depends=[mvtnorm truncnorm]; };
 spatgraphs = derive { name="spatgraphs"; version="2.62"; sha256="1h7sv6qc5zhaiaqlrzagrlc2mxlasdzilmi5q9nrd1vsdzsqxvb4"; depends=[]; };
-spatial = derive { name="spatial"; version="7.3-9"; sha256="12qhfqmznij1jddjklhlqzywcfw2hww8sff7b2m6mjxlky08p5jg"; depends=[]; };
+spatial = derive { name="spatial"; version="7.3-10"; sha256="0jcx476b7jpl16aqixr3h10sp0n9bwrk5jf2xgyd9sdifiba1xzk"; depends=[]; };
 spatial_gev_bma = derive { name="spatial.gev.bma"; version="1.0"; sha256="1rjn0gsbgiv69brhnm0zj25ya3nyfh4yf6jizng85mvss3viv3hj"; depends=[coda msm SpatialExtremes]; };
 spatial_tools = derive { name="spatial.tools"; version="1.4.8"; sha256="0qnsjfx974na87p3n7sp711sc13v6dmpvb2kjpvscixs8rsy03y1"; depends=[abind doParallel foreach iterators mmap raster rgdal]; };
-spatialCovariance = derive { name="spatialCovariance"; version="0.6-8"; sha256="06z6jz9sadqc382w07ysnnlhqc96hxaasz9wncbhipd4cd1y4daa"; depends=[]; };
+spatialCovariance = derive { name="spatialCovariance"; version="0.6-9"; sha256="1m86s9a059spp97y37dcirrgjshcqzpdj11cq92vji624w4nrhlb"; depends=[]; };
 spatialEco = derive { name="spatialEco"; version="0.1-1"; sha256="1k7xdgg541mwr9rk3h8pi7hgb61wza14azvmbxqd92m29p2yqn00"; depends=[cluster RANN raster RCurl rgeos rms SDMTools sp spatstat spdep]; };
 spatialTailDep = derive { name="spatialTailDep"; version="1.0.2"; sha256="107yldc43pgbadxdisnc7vq8vyvcps1b1isyvxd0kyf59xldiq47"; depends=[cubature mvtnorm SpatialExtremes]; };
 spatialkernel = derive { name="spatialkernel"; version="0.4-19"; sha256="0gbl6lrbaxzv2f975k0vd6ghrljgf1kjazld3hm7781kv1f87lji"; depends=[]; };
 spatialnbda = derive { name="spatialnbda"; version="1.0"; sha256="14mx5jybymasyia752f3vnr5vmswcavbz8bpqr69vlxphw27qkwk"; depends=[mvtnorm SocialNetworks]; };
 spatialprobit = derive { name="spatialprobit"; version="0.9-10"; sha256="1z88nss69pixazqk3b6rpyc7mjryfznrgw9swfyfxky0bsdfj6mv"; depends=[Matrix mvtnorm spdep tmvtnorm]; };
 spatialsegregation = derive { name="spatialsegregation"; version="2.40"; sha256="0kpna2198nrj93bjsdgvj85wnjfj18psdq919fjnnhbzgzdkxs7l"; depends=[spatstat]; };
-spatstat = derive { name="spatstat"; version="1.42-1"; sha256="10889xg5l7vjmlv79dhdayifplzxhnykhhgjpsn54rncz0k0hd0p"; depends=[abind deldir goftest Matrix mgcv polyclip tensor]; };
+spatstat = derive { name="spatstat"; version="1.42-2"; sha256="1wsdxl711p4vhaz69if1whjfrj81xkr6d2piw5hz0l04c6dcbac9"; depends=[abind deldir goftest Matrix mgcv polyclip tensor]; };
 spatsurv = derive { name="spatsurv"; version="0.9-9"; sha256="1zvf8n4isaxi8n47qvgw6zqrgsnf3g6jpm19k6w6zbp9v5r8fw7r"; depends=[fields geostatsp iterators Matrix RandomFields raster RColorBrewer rgeos rgl sp spatstat stringr survival]; };
 spc = derive { name="spc"; version="0.5.1"; sha256="1299lhk8snrhm7xpq0ccmq5kmpapc13rxcyvljs4c7frj645rwz4"; depends=[]; };
 spca = derive { name="spca"; version="0.6.0"; sha256="156bz3w3999vhjpsa9cs21rf2r9hv49vw1pfak0r37kbvf2d4rm6"; depends=[MASS]; };
-spcadjust = derive { name="spcadjust"; version="0.1-3"; sha256="1l6m4aisk780znpjr7lnlh0z42rbc2jyblv17hafbr1siymrasc2"; depends=[]; };
+spcadjust = derive { name="spcadjust"; version="0.9"; sha256="05w32bznv6s5jwwv4l1392zng6ia36205j88d0i6l9hcbp2g599a"; depends=[]; };
 spcosa = derive { name="spcosa"; version="0.3-5"; sha256="15q0f2sfhm1b13zs5a50yfvqhgcn4fyncf0h5ivin2k9g5xvq4k4"; depends=[ggplot2 rJava sp]; };
 spcov = derive { name="spcov"; version="1.01"; sha256="1brmy64wbk56bwz9va7mc86a0ajbfy09qpjafyq2jv7gm7a35ph5"; depends=[]; };
 spcr = derive { name="spcr"; version="1.2.1"; sha256="0cm59cfw3c24i1br08fdzsz426ldljxb41pdrmbmma4a69jkv1sb"; depends=[]; };
-spd = derive { name="spd"; version="2.0-0"; sha256="0aznzj68gynhx295gdb4sb7xxjiya4vbdg3gshfs0mwg1qzrhxy9"; depends=[KernSmooth]; };
+spd = derive { name="spd"; version="2.0-1"; sha256="00zxh4ri47b61jkcjf5idl9hhlfld6rhczsnhmjsax59884f2i8m"; depends=[KernSmooth]; };
 spdep = derive { name="spdep"; version="0.5-88"; sha256="1m2bxbf472xq7wr76znjirslx3hb1ylk6lp7x5003ka3i2zpakxn"; depends=[boot coda deldir LearnBayes MASS Matrix nlme sp]; };
 spdynmod = derive { name="spdynmod"; version="1.0"; sha256="05gaaln14lrrds43l2f9hw43c86gswyzymz97hc3mci1cgiwfwbz"; depends=[animation deSolve raster]; };
 spe = derive { name="spe"; version="1.1.2"; sha256="0xyx42n3gcsgqmy80nc9la6p6gq07anpzx0afwffyx9fv20fvys0"; depends=[]; };
@@ -6227,10 +6245,10 @@ speaq = derive { name="speaq"; version="1.2.1"; sha256="0glvw1jdyc8w8b8m7l74d0rl
 speccalt = derive { name="speccalt"; version="0.1.1"; sha256="0j7rbidmmx78vgwsqvqjbjjh92fnkf2sdx0q79xlpjl2dph7d6l6"; depends=[]; };
 specificity = derive { name="specificity"; version="0.1.1"; sha256="1gvlyx9crkzm3yyp1ln5j9czcg83k7grm6ijabhl919gjjr1p60n"; depends=[car]; };
 spectral_methods = derive { name="spectral.methods"; version="0.7.2.133"; sha256="0k8kpk94d2qzqdk3fnf6h9jmwdyp8h3klr0ilm5siwq5wkcz339l"; depends=[abind DistributionUtils foreach JBTools ncdf_tools nnet raster RColorBrewer RNetCDF Rssa]; };
-spectralGP = derive { name="spectralGP"; version="1.3.2"; sha256="0gzkwi3npb97y06gvsidaq75h8lg1cvkq8mr9hxp9n7ib6n924v9"; depends=[]; };
+spectralGP = derive { name="spectralGP"; version="1.3.3"; sha256="1jf09nsil4r90vdj7n1k6ma9dzzx3bwv0fa7svil9pxrd2zlbkbs"; depends=[]; };
 speedglm = derive { name="speedglm"; version="0.3"; sha256="07pq0ymg7x9c9pq79d476slca43jv4682iackd446glw2qffac1y"; depends=[MASS Matrix]; };
 speff2trial = derive { name="speff2trial"; version="1.0.4"; sha256="0dj5mh2sdp6j4ijgv14hjr39rasab8g83lx1d9y50av11yhbf2pw"; depends=[leaps survival]; };
-sperich = derive { name="sperich"; version="1.5-5"; sha256="0xwzyfx3z06lapvhzdzrfr9hw2hm8d0cyfmc29p5fcplmjm24idh"; depends=[]; };
+sperich = derive { name="sperich"; version="1.5-7"; sha256="1apgq5nsl6nw674dy7bc7r7z962wcmqsia5n67a8n6c5lcgcif3f"; depends=[foreach rgdal SDMTools sp]; };
 sperrorest = derive { name="sperrorest"; version="0.2-1"; sha256="17jq8r98pq3hsyiinxg30lddxwpwi696srsvm3lfxrzk11076j6v"; depends=[ROCR rpart]; };
 spfrontier = derive { name="spfrontier"; version="0.1.12"; sha256="1jy1604gppis7vbn55pv13bywy1aqwzshwj03bbfln0qxikzqzi0"; depends=[ezsim maxLik moments mvtnorm spdep tmvtnorm]; };
 spgrass6 = derive { name="spgrass6"; version="0.8-6"; sha256="0vpv2vycd6rdnwm1f73733x1nclhr2x4x1s5116szskni77b0pii"; depends=[sp XML]; };
@@ -6251,7 +6269,8 @@ splus2R = derive { name="splus2R"; version="1.2-0"; sha256="0kmyr1azyh0m518kzwvv
 splusTimeDate = derive { name="splusTimeDate"; version="2.5.0-135"; sha256="0hghggdcr70vfjx4npj37nmd96qvgrp1gpwa9bznvjkvyfawwy6i"; depends=[]; };
 splusTimeSeries = derive { name="splusTimeSeries"; version="1.5.0-73"; sha256="1csk0ffgg1bi2k1m2bbxl6aqqqxf6i8sc8d4azip8ck7rn8vya46"; depends=[splusTimeDate]; };
 spnet = derive { name="spnet"; version="0.9.0.6"; sha256="1kbf53ww2wdr2nsml9zhzd80dhi48izw1nwjszv9jqidd6nk7v29"; depends=[shape sp]; };
-spocc = derive { name="spocc"; version="0.2.4"; sha256="0hhjdx3vgzfwf368pvmapgb5hll659mwkyzvgagvzz90sm44134a"; depends=[AntWeb ecoengine ggmap ggplot2 gistr httr leafletR lubridate maptools rbison RColorBrewer rebird rgbif rgdal rgeos rinat rworldmap sp whisker]; };
+spocc = derive { name="spocc"; version="0.3.0"; sha256="110rd0blr5s8rnw0z5hwyg60xf22dr0jnb0c8qyywhf2q9xy6vln"; depends=[AntWeb ecoengine httr jsonlite lubridate rbison rebird rgbif rvertnet V8 whisker]; };
+spoccutils = derive { name="spoccutils"; version="0.1.0"; sha256="1al7hydwwzqd8ky91ggklf7lk42g79cx24i47gapd84jnwmmkq56"; depends=[ggmap ggplot2 gistr httr leafletR RColorBrewer rworldmap sp spocc]; };
 sporm = derive { name="sporm"; version="1.1"; sha256="07sxz62h4jb7xlqg08sj4wpx121n9jfk65196mnxdvb36lqmb4hp"; depends=[]; };
 sprex = derive { name="sprex"; version="1.1"; sha256="1lwkdi8g1dlfdnxxvspgpz6f5h2gml176xhfrcxa9gcy3y9rlcpm"; depends=[]; };
 sprint = derive { name="sprint"; version="1.0.7"; sha256="1yzx1qjpxx9yc0hbm1mmha5b7aq13iflq66af597b7yj6abm7zjp"; depends=[boot e1071 ff randomForest rlecuyer]; };
@@ -6270,7 +6289,7 @@ squash = derive { name="squash"; version="1.0.6"; sha256="16iplngzzlif999z821a9b
 sra = derive { name="sra"; version="0.1.1"; sha256="03nqjcydl58ld0wq1f9f5p666qnvdfxb5vhd584sdilw1b730ykd"; depends=[]; };
 srd = derive { name="srd"; version="1.0"; sha256="04j2gj7fn7p2rm34haayswrfhn6w5lln439d07m9g4c020kqqsr3"; depends=[animation colorspace plyr stringr survival]; };
 ss3sim = derive { name="ss3sim"; version="0.8.2"; sha256="1gj3kf4ccd5n2jr4sm50gny5x1zq4brkhqgw0nww41spnimascfr"; depends=[gtools lubridate plyr r4ss reshape2]; };
-ssanv = derive { name="ssanv"; version="1.0-2"; sha256="18ib0djqxjpp4xgvsffwqgxqljpwc24ysxj26phpr6p8kdl3hr2f"; depends=[]; };
+ssanv = derive { name="ssanv"; version="1.1"; sha256="17a4a5azxm5h2vxia16frcwdyd36phpfm7fi40q6mnnrwbpkzsjd"; depends=[]; };
 sscor = derive { name="sscor"; version="0.1"; sha256="0bvj6kzkjgdjwia907if8jlicygkh5gnk3s159gv9wvc50rjjab3"; depends=[mvtnorm pcaPP robustbase]; };
 ssd = derive { name="ssd"; version="0.3"; sha256="1z61n9m6vn0ijawyz924ak0zfl9z13jsb4k4575b7c424ci2p6gy"; depends=[]; };
 sse = derive { name="sse"; version="0.5-4"; sha256="126dc4gk0hynwfz887d3wdcs7xacmmjhpf82sbhmhvg73dc1r5jz"; depends=[lattice]; };
@@ -6285,9 +6304,8 @@ sspse = derive { name="sspse"; version="0.5-1"; sha256="0gih9d0g4kp08c4v01p699la
 sss = derive { name="sss"; version="0.0-11"; sha256="0k7p1ws0w7wg9wyxcg1zpk8q6kr32l3jl6yd9r4qmzq04dwqrdgz"; depends=[plyr XML]; };
 ssvd = derive { name="ssvd"; version="1.0"; sha256="1fdpr38qi59ijrz16jixn6ii1hvmxfjirjqfcp7dxrqz9nx8x0sk"; depends=[]; };
 ssym = derive { name="ssym"; version="1.5.3"; sha256="0d8d0s9k87w7mxlvkzj307wkmxghc0qzhn7crm3fvcb1phf115p8"; depends=[Formula GIGrvg normalp numDeriv survival]; };
-st = derive { name="st"; version="1.2.4"; sha256="1lnrzz7kc21mrs8xrqs21fcwd92d5kzhvfiq36j02982n18f6c64"; depends=[corpcor fdrtool sda]; };
+st = derive { name="st"; version="1.2.5"; sha256="0dnyfjcz37gjjv87nrabb11gw2dlkqhq3mrxdpkzahx0w0g0q0pb"; depends=[corpcor fdrtool sda]; };
 staTools = derive { name="staTools"; version="0.1.0"; sha256="1ksr0sjkhlwh0fkwcxjcxzbyxs1g78m4spkhrmgdpfzmk5zskqf9"; depends=[magicaxis Rcpp VGAM]; };
-stab = derive { name="stab"; version="0.1.9"; sha256="1awf8bj3c4wvs818g4wfmw23vdhv06kn229cmhqbr7dsz933vwwf"; depends=[MASS reshape]; };
 stabledist = derive { name="stabledist"; version="0.7-0"; sha256="06xd3kkyand0gzyj5phxlfjyygn5jlsq7gbwh62pc390by7ld2c7"; depends=[]; };
 stabs = derive { name="stabs"; version="0.5-1"; sha256="0mlwbf8wf38mr39si31i4iz00hpsmchbhgagwgsf3x9422zpq92p"; depends=[]; };
 stackoverflow = derive { name="stackoverflow"; version="0.1.2"; sha256="1psw96iscgsx11drmcnh0yjg2jjcaa4akmywh337i6gbgam8kj61"; depends=[]; };
@@ -6301,16 +6319,16 @@ statar = derive { name="statar"; version="0.3.0"; sha256="0ynvabdyp5vy90gz7c9ywb
 statcheck = derive { name="statcheck"; version="1.0.1"; sha256="01b40bjagkj6hfyq9ppdlaafwgykv8p9s8sm0abd3if82ivdpixj"; depends=[plyr]; };
 statebins = derive { name="statebins"; version="1.0"; sha256="1mqky4nb31xjhn922csvv8ps2fwgcgazxs56rcn3ka32c59a4mmg"; depends=[ggplot2 gridExtra RColorBrewer scales]; };
 statfi = derive { name="statfi"; version="0.9.8"; sha256="0kg9bj2mmd95ysg604rcg4szqx3whbqm14fwivnd110jgfy20gk2"; depends=[pxR]; };
-stationaRy = derive { name="stationaRy"; version="0.2"; sha256="1ylamq6mc0hq3hq17w7s1v9dv7wdzyn4afxh1zy739532p0xxm41"; depends=[downloader lubridate plyr proj4 sp]; };
+stationaRy = derive { name="stationaRy"; version="0.3"; sha256="151hsda3j8ii40v5z6nh6ypahrl0b2zlfdii75xlrpwryb7n3cq6"; depends=[downloader dplyr plyr readr]; };
 statmod = derive { name="statmod"; version="1.4.21"; sha256="138lh9qa25w6vaksbq43iqisj4c8hvmkjc3q81fn7m8b7zlnz6da"; depends=[]; };
 statnet = derive { name="statnet"; version="2014.2.0"; sha256="0xp8xnqb32wzkxfm7f34z6mnsd9id8an5829n16czwldj9vv6s10"; depends=[ergm ergm_count latentnet network networkDynamic sna statnet_common tergm]; };
 statnet_common = derive { name="statnet.common"; version="3.2.2"; sha256="1xdkc1pyf6wfb86dwz6bkjli5qw6yz6dvlxwp5bpgkpg83aa9n7g"; depends=[]; };
 statnetWeb = derive { name="statnetWeb"; version="0.3.4"; sha256="1nkis4l6yzpjcwxryskqfjgc2naxplzjc3gpp6xvpl0pcvw9mdk7"; depends=[ergm network RColorBrewer shiny sna]; };
-stcm = derive { name="stcm"; version="0.1.0"; sha256="0j2yhmg6m69igg3ilrf7rq3l37aqab7h4fx08k3gfgc8005w7ils"; depends=[caret dendextend ggplot2 magrittr plyr QCA randomForest XML]; };
+stcm = derive { name="stcm"; version="0.1.1"; sha256="05p0lp0p1mgcsf3mi3qgx42pgpv04m5wfmqa14gp63ialkl9pgx5"; depends=[caret dendextend ggplot2 magrittr plyr QCA randomForest XML]; };
 steepness = derive { name="steepness"; version="0.2-2"; sha256="0bw7wm7n2xspkmj90qsjfssnig683s3qwg1ndkq2aw3f6clh4ilm"; depends=[]; };
 stellaR = derive { name="stellaR"; version="0.3-3"; sha256="098sz6b8pl3fyca3g6myp97nna368xhxf8krmibadnnsr49q5zs9"; depends=[]; };
 stepPlr = derive { name="stepPlr"; version="0.92"; sha256="16j32sk7ri4jdgss7vw5zz7s42rxk7rs376iyxzzpy1zcc9b64rv"; depends=[]; };
-stepR = derive { name="stepR"; version="1.0-2"; sha256="1z2jncjhaxzxw5kqa8s3jlsl9blz3b7hlnzr3phfhwmb1hr6r56k"; depends=[]; };
+stepR = derive { name="stepR"; version="1.0-3"; sha256="0c35bb6ba507cgjhzz7dnzidsjxd9r01r355b85j2fcsvcj4agwg"; depends=[]; };
 stepp = derive { name="stepp"; version="3.0-11"; sha256="0jrwfvcgh3sjm3zag93kjyny2qqsyiw988vnx6jw7s31bv9g0d6s"; depends=[car survival]; };
 stepwise = derive { name="stepwise"; version="0.3"; sha256="1lbx1bxwkf9dw6q46w40pp7h5nkxgghmx8rkpaymm6iybc7gyir2"; depends=[]; };
 stheoreme = derive { name="stheoreme"; version="1.2"; sha256="14w3jcbs8y8cz44xlq8yybr2jwgk3w7s2msgjhlp1vazy8959s65"; depends=[]; };
@@ -6321,7 +6339,7 @@ stm = derive { name="stm"; version="1.0.8"; sha256="0dnzkqh3hnnjm0wmzpn48bwylmh4
 stmCorrViz = derive { name="stmCorrViz"; version="1.1"; sha256="03bjxil8v4ixgbabg2gq78xgqy4s3wh89hq1z5598gxysz12z3ji"; depends=[jsonlite stm]; };
 stocc = derive { name="stocc"; version="1.23"; sha256="183rv1l1hpa691f3xf455bv8dzdw6ac79zg3v99zksli6i7c8jdz"; depends=[coda fields Matrix truncnorm]; };
 stochprofML = derive { name="stochprofML"; version="1.2"; sha256="0gqfm2l2hq1dy3cvg9v2ksphydqdmaj8lppl5s5as2khnh6bd1l1"; depends=[MASS numDeriv]; };
-stochvol = derive { name="stochvol"; version="1.1.1"; sha256="1cfav3i7w5i3rayajdybjmwvmqvqj58zk8sk0icw52r5l4ki2d6s"; depends=[coda Rcpp]; };
+stochvol = derive { name="stochvol"; version="1.1.3"; sha256="077pky9k2cvakm4ap38hby8xdjc4d7b20qndyy2skk1622kmr0w6"; depends=[coda Rcpp]; };
 stockPortfolio = derive { name="stockPortfolio"; version="1.2"; sha256="0k5ss6lf9yhcvc4hwqmcfpdn6qkbq5kaw0arldkl46391kac3bd1"; depends=[]; };
 stocks = derive { name="stocks"; version="1.1.1"; sha256="1qwd16bw40w2ns7b0n9wm8l344r4vyk27rmg0vr5512zsrcjkcfb"; depends=[rbenchmark Rcpp]; };
 stoichcalc = derive { name="stoichcalc"; version="1.1-3"; sha256="0z9fnapibfp070jxg27k74fdxpgszl07xiqfj448dkydpg8ydkrb"; depends=[]; };
@@ -6333,14 +6351,14 @@ strataG = derive { name="strataG"; version="0.9.4"; sha256="0lxp6s0gfqxyla7mx19f
 stratification = derive { name="stratification"; version="2.2-5"; sha256="0cgr49gvh12s6rr43878jxjkir7b7absqgbfsvj1bjlf2r3gyqy9"; depends=[]; };
 stratigraph = derive { name="stratigraph"; version="0.66"; sha256="1idn5rwar9pxp1vsra68wrlhagmc92y5rs7vn4h63p35p357qdwz"; depends=[]; };
 straweib = derive { name="straweib"; version="1.0"; sha256="0bh2f4n4i7fiki52sa57v96757qw1gn1lcn7vgxmc5hk5rzp2mi8"; depends=[]; };
-stream = derive { name="stream"; version="1.1-4"; sha256="1pz9ck6rxxwnzrhixs015k3sy2gl8hwxyxwr56ykpkrcn6kgzm3f"; depends=[animation clue cluster clusterGeneration fpc MASS mlbench proxy Rcpp]; };
-streamMOA = derive { name="streamMOA"; version="1.1-0"; sha256="0h45saz5jf9jfsajy987ljpfpm2cxigyqkgmybd0m3aqyrqlljbc"; depends=[rJava stream]; };
+stream = derive { name="stream"; version="1.1-5"; sha256="10g3wwvwppp3fqrpxdlypfiq9y43sffx2hp7dha33ray565scrda"; depends=[animation clue cluster clusterGeneration fpc MASS mlbench proxy Rcpp]; };
+streamMOA = derive { name="streamMOA"; version="1.1-1"; sha256="1yfy5cpwk6z6f9j3mvvz69wpqnmrismsmxmx9fx6mjcs1zwgfyhb"; depends=[rJava stream]; };
 streamR = derive { name="streamR"; version="0.2.1"; sha256="1ml33mj7zqlzfyyam23xk5d25jkm3qr7rfj2kc5j5vgsih6kr0gl"; depends=[RCurl rjson]; };
 stremo = derive { name="stremo"; version="0.2"; sha256="13b9xnd8ykxrm8gnakh0ixbsb7yppqv3isga8dsz473wzy82y6h1"; depends=[lavaan MASS numDeriv]; };
 stressr = derive { name="stressr"; version="1.0.0"; sha256="00b93gfh1jd5r7i3dhsfqjidrczf693kyqlsa1krdndg8f0jkyj7"; depends=[lattice latticeExtra XML xts]; };
-stringdist = derive { name="stringdist"; version="0.9.0"; sha256="0304a3qyssq2l2c7da5a90fca32n3ph5jixqnqvb3jwzdb8dxm2f"; depends=[]; };
+stringdist = derive { name="stringdist"; version="0.9.2"; sha256="13cwp2ic4v48r6h1gjbb1kn4m88d69z7wnhwyxsh64lqlhaz1xsm"; depends=[]; };
 stringgaussnet = derive { name="stringgaussnet"; version="1.0"; sha256="11pkvbq2lddwhrwrpspqhjkma4ixl9hv8w7m4jrnlx8dkabibw25"; depends=[AnnotationDbi biomaRt httr igraph limma pspearman RCurl RJSONIO simone VennDiagram]; };
-stringi = derive { name="stringi"; version="0.4-1"; sha256="01ig59cmvrk9vfh4l84i2h4vgddfspyrxwh3am33apv8r8vr4bnj"; depends=[]; };
+stringi = derive { name="stringi"; version="0.5-5"; sha256="183wrrjhpgl1wbnn9lhghyvhz7l2mc64mpcmzplckal7y9j7pmhw"; depends=[]; };
 stringr = derive { name="stringr"; version="1.0.0"; sha256="0jnz6r9yqyf7dschr2fnn1slg4wn6b4ik5q00j4zrh43bfw7s9pq"; depends=[magrittr stringi]; };
 strucchange = derive { name="strucchange"; version="1.5-1"; sha256="0cdgvl6kphm2i59bmnppn1y3kv65ml111bk7yzpcx7vv8wh2w3kl"; depends=[sandwich zoo]; };
 structSSI = derive { name="structSSI"; version="1.1.1"; sha256="06rwmrgqc4qy4x0bhlshjdsjxfmp5fr9d1wjglhlb1gbp72fmkdv"; depends=[ggplot2 igraph multtest reshape2 rjson]; };
@@ -6384,7 +6402,7 @@ survexp_fr = derive { name="survexp.fr"; version="1.0"; sha256="12rjpnih0xld4dg5
 survey = derive { name="survey"; version="3.30-3"; sha256="0vcyph1vpnl4xaqd85ffh1gm0dqhvgr3343q0mlycmyq485x0idy"; depends=[]; };
 surveydata = derive { name="surveydata"; version="0.1-14"; sha256="1zcp3wb7yhsa59cl4bdw7p08vpviypvfa9hggwc60w7ashpky73i"; depends=[plyr stringr]; };
 surveyeditor = derive { name="surveyeditor"; version="1.0"; sha256="073219bcn1hlxl9ql6gncfvgn0m37pz5sb7h94nq6lf35dymq5zq"; depends=[]; };
-survival = derive { name="survival"; version="2.38-2"; sha256="1qy9iav9h459ligpxqhg7rbn6ai39xij5qjyig7pcwmpgxqvdj69"; depends=[]; };
+survival = derive { name="survival"; version="2.38-3"; sha256="1hkji557sz4q86pp7xj3h4cdwsnfl1mlj4c6c917mnbijj3bm215"; depends=[]; };
 survivalMPL = derive { name="survivalMPL"; version="0.1.1"; sha256="0c4hr2q50snd5qm2drg4qzfkcz4klxr4jba6xpc8n2i8wn573cvc"; depends=[survival]; };
 survivalROC = derive { name="survivalROC"; version="1.0.3"; sha256="0wnd65ff5w679hxa1zrpfrx9qg47q21pjxppsga6m3h4iq1yfj8l"; depends=[]; };
 survrec = derive { name="survrec"; version="1.2-2"; sha256="0b77ncr1wg2xqqg1bv1bvb48kmd9h3ja2dysiggvprzjrj7hdlmx"; depends=[boot]; };
@@ -6405,7 +6423,7 @@ svapls = derive { name="svapls"; version="1.4"; sha256="12gk8wrgp556phdv89jqza22
 svcm = derive { name="svcm"; version="0.1.2"; sha256="1lkik65md8xdxzkmi990dvmbkc6zwkyxv8maypv2vbi2x534jkhl"; depends=[Matrix]; };
 svd = derive { name="svd"; version="0.3.3-2"; sha256="064y4iq4rj2h35fhi6749wkffg37ppj29g9aw7h156c2rqvhxcln"; depends=[]; };
 svdvisual = derive { name="svdvisual"; version="1.1"; sha256="02mzh2cy4jzb62fd4m1iyq499fzwar99p12pyanbdnmqlx206mc2"; depends=[lattice]; };
-svgViewR = derive { name="svgViewR"; version="1.0.0"; sha256="0js3mc5lxzfwbnc30mn9k9g9jiy2aivqs08x0zcg9dir5n7gs9sg"; depends=[]; };
+svgViewR = derive { name="svgViewR"; version="1.0.1"; sha256="1ggw5w5xjqp33z6nzszimcab3vkv4rliiilhcqbhppqlnhjb8nab"; depends=[]; };
 svmpath = derive { name="svmpath"; version="0.953"; sha256="0hqga4cwy1az8cckh3nkknbq1ag67f4m5xdg271f2jxvnmhdv6wv"; depends=[]; };
 svyPVpack = derive { name="svyPVpack"; version="0.1-1"; sha256="15k5ziy2ng853jxl66wjr27lzc90l6i5qr08q8xgcs359vn02pmp"; depends=[survey]; };
 swamp = derive { name="swamp"; version="1.2.3"; sha256="1xpnq5yrmmsx3d48x411p7nx6zmwmfc9hz6m3v9avvpjkbc3glkg"; depends=[amap gplots impute MASS]; };
@@ -6413,9 +6431,9 @@ sweidnumbr = derive { name="sweidnumbr"; version="0.6.0"; sha256="1qdak16jnm436m
 swfscMisc = derive { name="swfscMisc"; version="1.0.3"; sha256="0ciwvxpafpc6an58r1ffkab8kj4np6l2kbpkijnqnfbf6cya0aim"; depends=[mapdata maps]; };
 swirl = derive { name="swirl"; version="2.2.21"; sha256="0lpin7frm1a6y9lz0nyykhvydr1qbx85iqy24sm52r1vxycv2r8h"; depends=[digest httr RCurl stringr testthat yaml]; };
 switchnpreg = derive { name="switchnpreg"; version="0.8-0"; sha256="1vaanz01vd62ds2g2xv4kjlnvp13h59n8yqikwx07293ixd4qhpw"; depends=[expm fda HiddenMarkov MASS]; };
-switchr = derive { name="switchr"; version="0.9.6"; sha256="0w1nf6jncs85hqbvddcrmdx9y1gd5702ab9180v9icp7al06kxzp"; depends=[]; };
+switchr = derive { name="switchr"; version="0.9.10"; sha256="02595b4mhhgm8j1abmk78z27fz27kr0mg01d7hf7n6yv6ybhn0qz"; depends=[]; };
 switchrGist = derive { name="switchrGist"; version="0.2.1"; sha256="0n8fzzsxm0m4yic133q07vki803zywhijadymrgyq7qlx3d1m97d"; depends=[gistr httpuv RJSONIO switchr]; };
-sybil = derive { name="sybil"; version="1.2.6"; sha256="1d7q0dvpqxay86dy4zbllv78dsh0amr8n7wl0vkrb8jbakq4afip"; depends=[lattice Matrix]; };
+sybil = derive { name="sybil"; version="1.3.0"; sha256="1wprxwxyh5vzi263x1s7vdnyjgmyh3lha9ld2qqyjabrkg6wjzwg"; depends=[lattice Matrix]; };
 sybilDynFBA = derive { name="sybilDynFBA"; version="0.0.2"; sha256="1sqk6dwwfrwvgkwk6mra0i1dszhhvcwm58ax6m89sxk8n0nbmr4b"; depends=[sybil]; };
 sybilEFBA = derive { name="sybilEFBA"; version="1.0.2"; sha256="07c32xwql7sr217j8ixqd2pj43hhyr99vjdh7c106lsmqd1pifa4"; depends=[Matrix sybil]; };
 sybilSBML = derive { name="sybilSBML"; version="2.0.8"; sha256="1sxp0naws7d1ak0xna1sy87zzjrravwax0qvcd6vy4p0f39z06ci"; depends=[Matrix sybil]; };
@@ -6430,7 +6448,7 @@ synbreedData = derive { name="synbreedData"; version="1.5"; sha256="16wv9r7p0n87
 synchronicity = derive { name="synchronicity"; version="1.1.4"; sha256="0hcxwgf1irswwabgl0b6vb9q09nhxc1ljsm195lc8ql49sfj9mfz"; depends=[BH bigmemory_sri]; };
 synchrony = derive { name="synchrony"; version="0.2.3"; sha256="0fi9a3j8dfslf1nqx8d53fi635y3aq8isxw0dbjbpgk7rc71nzby"; depends=[]; };
 synlik = derive { name="synlik"; version="0.1.1"; sha256="0g4n78amydihsq4jg2i9barjm9g40zczasb31fj10yn6wir1dhv7"; depends=[Matrix Rcpp RcppArmadillo]; };
-synthpop = derive { name="synthpop"; version="1.1-0"; sha256="1j9d0jpmr8dva2c7gd6z1q0a3qdxkvmm83xlv08dxkbvsfbzvmmr"; depends=[coefplot foreign ggplot2 lattice MASS nnet party plyr proto rpart]; };
+synthpop = derive { name="synthpop"; version="1.1-1"; sha256="0l65pbjcc163dqalkz1dil5bpfb9f3p4wx6hpr7z4g0ir58anbip"; depends=[coefplot foreign ggplot2 lattice MASS nnet party plyr proto rpart]; };
 sysfonts = derive { name="sysfonts"; version="0.5"; sha256="1vppj3jnag88351f8xfk9ds8gbbij3m55iq5rxbnrzy89c04zpzp"; depends=[]; };
 systemfit = derive { name="systemfit"; version="1.1-16"; sha256="0b34cpwhmsmq7dcr3gymdvanj3q493aczgz3af7b14bsp3bbwpw6"; depends=[car lmtest MASS Matrix sandwich]; };
 systemicrisk = derive { name="systemicrisk"; version="0.2"; sha256="06061hca2x9hj0caann69j6x2jgy8bq40nxs27iqb3zfqp2cz44f"; depends=[lpSolve Rcpp]; };
@@ -6438,6 +6456,7 @@ syuzhet = derive { name="syuzhet"; version="0.2.0"; sha256="1l83wjiv1xsxw4wrcgcj
 taRifx = derive { name="taRifx"; version="1.0.6"; sha256="10kp06hkdx1qrzh2zs9mkrgcnn6d31cldjczmk5h9n98r34hmirx"; depends=[plyr reshape2]; };
 taRifx_geo = derive { name="taRifx.geo"; version="1.0.6"; sha256="0w7nwp3kvidqhwaxaiq267h99akkrj6xgkviwj0w01511m2lzghs"; depends=[RCurl rgdal rgeos RJSONIO sp taRifx]; };
 tab = derive { name="tab"; version="3.1.1"; sha256="05wypi4v9r2qlgwafd9f58vnxn2c4fnz18l8xpb24nhdgm35adqy"; depends=[gee survey survival]; };
+taber = derive { name="taber"; version="0.0.1"; sha256="1dqcsxl82s96rlw5jx8wzdvx351qd9jz6npfrhnwifr7vxhl2prd"; depends=[dplyr magrittr]; };
 table1xls = derive { name="table1xls"; version="0.3.1"; sha256="0zd93wrdj4q0ph375qlgdhpqm3n8s941vks5h07ks9gc8id1bnx5"; depends=[XLConnect]; };
 tableone = derive { name="tableone"; version="0.6.3"; sha256="0r91vzq3whz949kxg9q9bf413r41cxqsjvmicmb4najhwzhdr9fv"; depends=[e1071 gmodels]; };
 tableplot = derive { name="tableplot"; version="0.3-5"; sha256="1jkkl2jw7lwm5zkx2yaiwnq1s3li81vidjkyl393g1aqm9jf129l"; depends=[]; };
@@ -6445,7 +6464,8 @@ tables = derive { name="tables"; version="0.7.79"; sha256="05f23y5ff961ksx4fnmwp
 tabplot = derive { name="tabplot"; version="1.1"; sha256="0vyc6b6h540sqwhrza2ijg7ghw2x8rla827b8qy2sh0ckm0ybjrx"; depends=[ffbase]; };
 tabplotd3 = derive { name="tabplotd3"; version="0.3.3"; sha256="0mbj45vb17wlnndpkhvq7xaawsb814x7zxa4rqbfgidvbm1p3abv"; depends=[brew httpuv RJSONIO Rook tabplot]; };
 tabuSearch = derive { name="tabuSearch"; version="1.1"; sha256="0bri03jksm314xy537dldbdvgyq6sywfmpmj2g2acdcli31kkpq0"; depends=[]; };
-tagcloud = derive { name="tagcloud"; version="0.5"; sha256="0d6h54p20pjnh1y7bw381nqbml1hv5x71gm33mgrzcib7mqa0c0b"; depends=[RColorBrewer Rcpp]; };
+tagcloud = derive { name="tagcloud"; version="0.6"; sha256="04zrh029n8pjlxlr6pdd7xhqqhavbrj3fhvhj6ygzlvi2jslxnwl"; depends=[RColorBrewer Rcpp]; };
+tailloss = derive { name="tailloss"; version="1.0"; sha256="0lmjgjs6d94b70i10vx66fyvlxm5swwqbcjsnqa3lmldzz6m4jc1"; depends=[MASS]; };
 tau = derive { name="tau"; version="0.0-18"; sha256="04rj3jrcz4h60dqm1xmnmpr52csz1s7rf2wv6ivybgyvbq0w2ijf"; depends=[]; };
 tawny = derive { name="tawny"; version="2.1.2"; sha256="0ihg3qlng8swak1dfpbnlx5xc45d1i9rgqawmqa97v5m91smfa71"; depends=[futile_logger futile_matrix lambda_r lambda_tools PerformanceAnalytics quantmod tawny_types xts zoo]; };
 tawny_types = derive { name="tawny.types"; version="1.1.3"; sha256="1v0k6nn45rdczjn5ymsp2fqq0ijnlniyf3bc08ibd8yd1jcdyjnj"; depends=[futile_logger futile_options lambda_r lambda_tools quantmod xts zoo]; };
@@ -6455,7 +6475,6 @@ tbdiag = derive { name="tbdiag"; version="0.1"; sha256="1wr2whgdk84426hb2pf8iiyr
 tcR = derive { name="tcR"; version="2.0"; sha256="05y3nbqdaxry7jwph6z2v8d2304xh791l0vviywyghrw7b2hqw9q"; depends=[data_table dplyr ggplot2 gridExtra gtable igraph Rcpp reshape2 roxygen2 stringdist]; };
 tcltk2 = derive { name="tcltk2"; version="1.2-11"; sha256="1ibxld379600xx7kiqq3fck083s8psry12859980218rnzikl65d"; depends=[]; };
 tclust = derive { name="tclust"; version="1.2-3"; sha256="0a1b7yp4l9wf6ic5czizyl2cnxrc1virj0icr8i6m1vv23jd8jfp"; depends=[cluster mclust mvtnorm sn]; };
-tdm = derive { name="tdm"; version="3.0.3"; sha256="01xy090h9idw05jssfgdarbqp5d1vsiir5x7fr1ylaz0k8ai23d4"; depends=[coda deSolve png rjags]; };
 tdr = derive { name="tdr"; version="0.11"; sha256="1ga1lczqj5pka2yz7igxfm83xmkx7lla8pz6ryij0ybn284agszs"; depends=[ggplot2 lattice RColorBrewer]; };
 tdthap = derive { name="tdthap"; version="1.1-7"; sha256="0lqcw4bzjd995pwn2yrmzay82gnkxnmxxsqplpbn5gg8p6sf5qqk"; depends=[]; };
 teigen = derive { name="teigen"; version="2.0.81"; sha256="1bssfn487dg1nc7fv73ksciiifnk1mvaqvp8a3gjmrb7bzfyzby7"; depends=[]; };
@@ -6498,7 +6517,7 @@ tiger = derive { name="tiger"; version="0.2.3.1"; sha256="0xr56c46b956yiwkili6vp
 tigerstats = derive { name="tigerstats"; version="0.2-6"; sha256="0niibqhqpjxgq3m7xp0icf98k531ncmm853scvqp5icv2yz5ivav"; depends=[abd ggplot2 lattice MASS mosaic mosaicData]; };
 tightClust = derive { name="tightClust"; version="1.0"; sha256="0psyzk6d33qkql8v6hzkp8mfwb678r95vfycz2gh6fky7m5k3yyz"; depends=[]; };
 tikzDevice = derive { name="tikzDevice"; version="0.8.1"; sha256="0262szfzv4yrfal19giinrphra1kfcm2arfckql4rf2zsq13rw35"; depends=[filehash]; };
-tileHMM = derive { name="tileHMM"; version="1.0-6"; sha256="18vqj7fdh4knnjk9s7yk2bgn3qwqz92fmm5fdny21gi0wl4qgdsd"; depends=[]; };
+tileHMM = derive { name="tileHMM"; version="1.0-7"; sha256="1ks4b6h15982jh3ls9fz8hq9ac1wf5hfjsvdqcmnba8n3m5zm651"; depends=[corpcor st]; };
 timeDate = derive { name="timeDate"; version="3012.100"; sha256="0cn4h23y2y2bbg62qgm79xx4cvfla5xbpmi9hbdvkvpmm5yfyqk2"; depends=[]; };
 timeROC = derive { name="timeROC"; version="0.3"; sha256="0xl6gpb5ayppzp08wwry4i051rm40lzfx43jw2yn3jy2p3nrcakb"; depends=[mvtnorm pec]; };
 timeSeq = derive { name="timeSeq"; version="1.0.0"; sha256="1b7jcld1h3xsp3nl2nk9nqsgdg1pdi4m54hgsdlvivk9zzv3k6wr"; depends=[doParallel edgeR foreach gss lattice pheatmap reshape]; };
@@ -6509,7 +6528,7 @@ timeordered = derive { name="timeordered"; version="0.9.8"; sha256="1j0x2v22ybyl
 timereg = derive { name="timereg"; version="1.8.9"; sha256="12l8sz10ic8d34jd7ik8szg2d51pr949nsss20c5l5g3kfnvqkkh"; depends=[lava numDeriv survival]; };
 timesboot = derive { name="timesboot"; version="1.0"; sha256="1ixmcigi1bf42np93md8d3w464papg9hp85v0c3hg3vl4nsm2bji"; depends=[boot]; };
 timeseriesdb = derive { name="timeseriesdb"; version="0.2.1"; sha256="0150zs8c8184jzry33aki21prmpnxp3rclp84q6igwxi4grdhlr0"; depends=[DBI reshape2 RJSONIO RPostgreSQL shiny xts zoo]; };
-timetools = derive { name="timetools"; version="1.6.5"; sha256="1ni1dqzkdrzmvr0sbnfdh7kcsd5sgfggfl6w7nqviidcff5dbc9g"; depends=[]; };
+timetools = derive { name="timetools"; version="1.7.0"; sha256="14g2fnc9jvy7s615cq36821z8x2ww304vnm4krhy36knayrd6z7c"; depends=[]; };
 timetree = derive { name="timetree"; version="1.0"; sha256="1fpdp6mkwm67svqvkfflvqxn52y2041zl09rxrms28ybbd5f84c0"; depends=[phangorn XML]; };
 timma = derive { name="timma"; version="1.2.1"; sha256="1pypk0pwkhyilh1hsn8hasia1hf6hbskj0xw6vas03k19b6fjnli"; depends=[QCA Rcpp RcppArmadillo reshape2]; };
 timsac = derive { name="timsac"; version="1.3.3"; sha256="0jg9mjzzfl94z4dqb2kz0aiccpclnbyf9p08x3a3cw1y6wqmzrmy"; depends=[]; };
@@ -6522,7 +6541,7 @@ tlemix = derive { name="tlemix"; version="0.1.3"; sha256="0c4mvdxlhbmyxj070xyipx
 tlm = derive { name="tlm"; version="0.1.3"; sha256="1jj8yihq4b13wavflkkv91m9ba2l5ar3vcwp1ss6iymyf3hzdgiv"; depends=[boot]; };
 tlmec = derive { name="tlmec"; version="0.0-2"; sha256="1gak8vxmfjf05bhaj6lych7bm8hgav1x3h14k2ra7236v82rqbw7"; depends=[mvtnorm]; };
 tlnise = derive { name="tlnise"; version="2.0"; sha256="1vh998vqj359249n9zmw04rsivb7nlbdfgzf20pgh2sndm3rh8qz"; depends=[]; };
-tm = derive { name="tm"; version="0.6-1"; sha256="0i32gwic6vi7fkw05vg3rk8lmszzmy6gm9f5hrj0xckx7sf1ilfq"; depends=[NLP slam]; };
+tm = derive { name="tm"; version="0.6-2"; sha256="0q7plaqgc2ypihnz3dyjv2pwa0aimd4kv5i2z6m7aycc4wkmc7j4"; depends=[NLP slam]; };
 tm_plugin_alceste = derive { name="tm.plugin.alceste"; version="1.1"; sha256="0wid51bbbx01mjfhnaiv50vfyxxmjxw8alb73c1hq9wlsh3x3vjf"; depends=[NLP tm]; };
 tm_plugin_dc = derive { name="tm.plugin.dc"; version="0.2-7"; sha256="1ikkxp5jdr385yqvhknvkvs97039jw964pcm6dl1k66nbdv1q59i"; depends=[DSL NLP slam tm]; };
 tm_plugin_europresse = derive { name="tm.plugin.europresse"; version="1.2"; sha256="1sgm9wnzlphl4qhc69nj5im4y1qs6b0vssmn5j98fbc3xlxiyzjx"; depends=[NLP tm XML]; };
@@ -6534,11 +6553,12 @@ tmap = derive { name="tmap"; version="1.0"; sha256="1807zh2yjgcpjrl1g83ahby7857l
 tmg = derive { name="tmg"; version="0.3"; sha256="0yqavibinzsdh85izzsx8b3bb9l36vzkp5a3bdwdbh410s62j68a"; depends=[Rcpp RcppEigen]; };
 tmle = derive { name="tmle"; version="1.2.0-4"; sha256="11hjp2vak1zv73326yzzv99wg8a2xyvfgvbyvx3jfxkgk33mybbm"; depends=[SuperLearner]; };
 tmle_npvi = derive { name="tmle.npvi"; version="0.10.0"; sha256="00jav1ql3lv18wh9msxnjvz36z2ds44fdi6lrp1pfphh1in4vdcl"; depends=[geometry MASS Matrix R_methodsS3 R_oo R_utils]; };
+tmod = derive { name="tmod"; version="0.19"; sha256="0wnj2dfp3jjvr8xl43kw86b3xgqd1662zjagzb9ayznx5vi2k5zb"; depends=[beeswarm pca3d tagcloud XML]; };
 tmvtnorm = derive { name="tmvtnorm"; version="1.4-9"; sha256="1dacdhqv6bb29a81bmxp8hxy4hragpg8mb5kql4cp59q08zmizyi"; depends=[gmm Matrix mvtnorm]; };
 tnet = derive { name="tnet"; version="3.0.11"; sha256="00hifb145w0a9f5qi3gx16lm1qg621jp523vswb8h86jqmxcczbc"; depends=[igraph survival]; };
 toOrdinal = derive { name="toOrdinal"; version="0.0-1"; sha256="1rr6liw0krzdarc9gd406mf242n3hl38bn52xphr1g0riq5y2m4q"; depends=[]; };
 tolerance = derive { name="tolerance"; version="1.1.0"; sha256="1mrgvrdlawrmbz8bhq9cxqgn4fxvn18f1gjf9f9s8fvfnc4nda96"; depends=[rgl]; };
-topicmodels = derive { name="topicmodels"; version="0.2-1"; sha256="1if1pdx4jnfx3xi37xs411qv3h449vkwxzzqd7krxaxbj3gqq7n9"; depends=[modeltools slam tm]; };
+topicmodels = derive { name="topicmodels"; version="0.2-2"; sha256="1nk3jgibs881isaadawyc377f4491af97jaqywc0z905wkzi008r"; depends=[modeltools slam tm]; };
 topmodel = derive { name="topmodel"; version="0.7.2-2"; sha256="1nqa8fnpxcn373v6qcd9ma8qzcqwl2md347yql3c8bpqlm9ggz16"; depends=[]; };
 topologyGSA = derive { name="topologyGSA"; version="1.4.4"; sha256="092f57gpm8jlb2y4j74a6dx1lwqjdgcm3yrm1yzy4511j6vg0axh"; depends=[fields graph gRbase qpgraph]; };
 topsis = derive { name="topsis"; version="1.0"; sha256="056cgi684qy2chh1rvhgkxwhfv9nnfd7dfzc05m24gy2wyypgxj3"; depends=[]; };
@@ -6556,16 +6576,18 @@ traj = derive { name="traj"; version="1.2"; sha256="0mq6xdbxjqjivxyy7cwaghwmnmb5
 trajectories = derive { name="trajectories"; version="0.1-3"; sha256="1lk2mxfsf8x8idhb4dcj9lqvkjwm2yarvjid42xr2a9wwylvz9vq"; depends=[lattice sp spacetime]; };
 translate = derive { name="translate"; version="0.1.2"; sha256="1w0xrg1xxwfdanlammmixf06hwq700ssbjlc3cfigl50p87dbc5x"; depends=[functional lisp RCurl RJSONIO]; };
 translateR = derive { name="translateR"; version="1.0"; sha256="11kh9hjpsj5rfmzybnh345n1gzb0pdksrjp04nzlv948yc0mg5gm"; depends=[httr RCurl RJSONIO textcat]; };
+translateSPSS2R = derive { name="translateSPSS2R"; version="1.0.0"; sha256="11qnf44aq0dykcsv29faa9r4fcw9cc9rkgczsqx3mngvg3bilada"; depends=[car data_table e1071 foreign Hmisc plyr stringr tidyr zoo]; };
+translation_ko = derive { name="translation.ko"; version="0.0.1.5.2"; sha256="1w5xibg4znhd39f3i0vsqckp6iia43nblqxnzgj0ny6s7zmdq1wd"; depends=[]; };
 transport = derive { name="transport"; version="0.6-3"; sha256="1sldlccsprzan1liyslzp9wzz3d36khyr6zri773npvnss9pa67w"; depends=[]; };
 trapezoid = derive { name="trapezoid"; version="2.0-0"; sha256="0f6rwmnn61bj97xxdgbydi94jizv1dbq0qycl60jb4dsxvif8l3n"; depends=[]; };
 treatSens = derive { name="treatSens"; version="1.1"; sha256="1h49idgv3rsday8xdj3rfqflj42ya9i5sg7cm1026arff1yqxxz8"; depends=[]; };
-tree = derive { name="tree"; version="1.0-35"; sha256="1cxn73rlr8s3qbq3icdh1v3jbbz913ns6xk6yzgk30ncifw4iq6g"; depends=[]; };
+tree = derive { name="tree"; version="1.0-36"; sha256="0kqsmjw77p7n2awnlbnwny65rmmwb6z37x9rv1k4iqvvf8xbphg1"; depends=[]; };
 treeClust = derive { name="treeClust"; version="1.0-0"; sha256="1xn6m031vx12wcyyh04yb68cw416a6v5wd8rcp5f9jqirv1hp4xb"; depends=[cluster rpart]; };
 treebase = derive { name="treebase"; version="0.1.1"; sha256="00xjmvnfh8f05w0076f5rlqa6w5yw0xiqpk076j3ixsv8z6m10hy"; depends=[ape data_table RCurl reshape2 XML]; };
 treeclim = derive { name="treeclim"; version="1.0.11"; sha256="09i7zxwdrbfgridxsm20r554nyvwp40ngc47isy16a7f1q3rwjah"; depends=[abind boot ggplot2 lmodel2 lmtest np plyr Rcpp RcppArmadillo]; };
 treecm = derive { name="treecm"; version="1.2.1"; sha256="02al6iz25pay7y1qmbpy04nw8dj9c5r7km6q5k3v3jdkfal6cm6k"; depends=[plyr]; };
 treelet = derive { name="treelet"; version="1.1"; sha256="0k3qhxjg7ws6jfhcvvv9jmy26v2wzi4ghnxnwpjm8nh7b90lbysd"; depends=[]; };
-treemap = derive { name="treemap"; version="2.2"; sha256="0h4wkjw12n9awqsvrs72nmsxq3d5as3zjy8kyhw7715h1cvry769"; depends=[colorspace data_table ggplot2 gridBase igraph RColorBrewer shiny]; };
+treemap = derive { name="treemap"; version="2.3"; sha256="1isf39ja356w0bpv6jww6pm6ldvd34jd49myhjic6vh2yskh556x"; depends=[colorspace data_table ggplot2 gridBase igraph RColorBrewer shiny]; };
 treeperm = derive { name="treeperm"; version="1.6"; sha256="0mz7p9khrsq4dbkijymfvlwr01y4fvs0x6si4x5xid16s2zsnmm4"; depends=[]; };
 treethresh = derive { name="treethresh"; version="0.1-8"; sha256="1xkbqlr9gkpw6axzl7v5aipackhvy873yrpwn2b9zqr35pj06pr6"; depends=[EbayesThresh wavethresh]; };
 trend = derive { name="trend"; version="0.0.1"; sha256="05awwsqp8vm2p00dq2hkb7dglwf45djw2xx2q2mq33blrlhn31sw"; depends=[]; };
@@ -6584,7 +6606,7 @@ truncdist = derive { name="truncdist"; version="1.0-1"; sha256="0aszs6rz8nydyf2d
 truncgof = derive { name="truncgof"; version="0.6-0"; sha256="0b499i9zjwvva5jfl9fj02jjrgy8myxqfjwa0cjg0jrpgxczgwg8"; depends=[MASS]; };
 truncnorm = derive { name="truncnorm"; version="1.0-7"; sha256="1qac05z50618y4bw1d7yznsli1bv82s0g8h37iacrjrdkv87bmy7"; depends=[]; };
 truncreg = derive { name="truncreg"; version="0.2-1"; sha256="0qvdfj93phk1s2p4n0rmpf8x9gj5n1j75h4z424mrg10r24699rd"; depends=[maxLik]; };
-trust = derive { name="trust"; version="0.1-6"; sha256="1jghgwnazhqgyn2k0b3x4n8swncyy6dzlkv86chv98zw4s3bnlak"; depends=[]; };
+trust = derive { name="trust"; version="0.1-7"; sha256="013gmiqb6frzsl6fsb5pqfdapwdxas0llg954hlcvgki9al5mlg3"; depends=[]; };
 trustOptim = derive { name="trustOptim"; version="0.8.5"; sha256="1y9krw2z5skkwgfdjagl8l04l9sbiqbk1fbxp30wrf4qj3pba5w6"; depends=[Matrix Rcpp RcppEigen]; };
 tsDyn = derive { name="tsDyn"; version="0.9-43"; sha256="0fhqfwhac1ac1vakwll41m54l88b1c5y34hln5i1y2ngvhy277l1"; depends=[foreach forecast MASS Matrix mgcv mnormt nnet tseries tseriesChaos urca vars]; };
 tsModel = derive { name="tsModel"; version="0.6"; sha256="0mkmhzj4g38ngzfcfx0zsiqpxs2qpw82kgmm1b8gl671s4rz00zs"; depends=[]; };
@@ -6595,18 +6617,19 @@ tsc = derive { name="tsc"; version="1.0-3"; sha256="1acsdkxizlkix1sskwqv2a80rshw
 tscount = derive { name="tscount"; version="1.0.0"; sha256="0n01biifzjfvnj3zhrn87qigf4l1kij2zfqf6876qz8rps1jz626"; depends=[ltsa]; };
 tseries = derive { name="tseries"; version="0.10-34"; sha256="068mjgjcsvgpynkvga8lv430cg8zhlr9frj5yapsxni2vj534pqj"; depends=[quadprog zoo]; };
 tseriesChaos = derive { name="tseriesChaos"; version="0.1-13"; sha256="0f2hycxyvcaj3s1lmva1qy46xr6qi43k8fvnm4md5qj8jp2zkazg"; depends=[deSolve]; };
+tseriesEntropy = derive { name="tseriesEntropy"; version="0.5-12"; sha256="0z9354mlj0nh829ccwwhs53q5myfp31x9n6kv1k8gmvz5xma40kh"; depends=[cubature]; };
 tsfa = derive { name="tsfa"; version="2014.10-1"; sha256="0gkgl55v08dr288nf8r769f96qri7qbi5src7y6azrykb37nz6iz"; depends=[dse EvalEst GPArotation setRNG tfplot tframe]; };
 tsintermittent = derive { name="tsintermittent"; version="1.5"; sha256="1qziwdpxfc2v010bk2cnhkrajza0z7lrrsjg06m49msyk5bk62z1"; depends=[MAPA]; };
-tslars = derive { name="tslars"; version="1.0"; sha256="0ylpn4jxmrck7hna3j420kw2yhsrklrq2664w85z30xij3zrrrci"; depends=[]; };
 tsne = derive { name="tsne"; version="0.1-2"; sha256="12q5s79r2949zhm61byd4dbgw6sz3bmxzcwr8b0wlp8g1xg4bhy6"; depends=[]; };
 tsoutliers = derive { name="tsoutliers"; version="0.6"; sha256="1cyh56i7dsnclphi81fab6k8vkdqv8ing2zmpfsjq4gvq76p7piw"; depends=[forecast KFKSDS polynom stsm]; };
-tspmeta = derive { name="tspmeta"; version="1.1"; sha256="11kr5avf67v2cxy3k1yrpv9lcbmiprd0w43w7zvizhsij58h13vm"; depends=[BBmisc fpc ggplot2 MASS splancs stringr TSP vegan]; };
+tspmeta = derive { name="tspmeta"; version="1.2"; sha256="028jbbd0pwpbjq4r6jcc1h0p7c4djcb9d2mvgzw1rmpphaxjvrkd"; depends=[BBmisc checkmate fpc ggplot2 MASS splancs stringr TSP vegan]; };
 ttScreening = derive { name="ttScreening"; version="1.5"; sha256="0qn8lkvgvqpmm368fwpqkm09yaj9mw42mjlikyiwpv2wrgbpmg9n"; depends=[corpcor limma MASS matrixStats sva]; };
 tth = derive { name="tth"; version="4.3-2"; sha256="1gs8xjljklvs0pavvn9f59y09hw7x2da58a46b5x01g08i0j8h1d"; depends=[]; };
 ttutils = derive { name="ttutils"; version="1.0-1"; sha256="18mk30070mcplybg320vjbk9v5flxnbqi5gx0yyr1z6ymjmnrxbc"; depends=[]; };
 ttwa = derive { name="ttwa"; version="0.8.5.1"; sha256="1lhypcwssq0dspizvln3w4dg16ad6mz8cj4w34c5vsrayqid7fyn"; depends=[data_table]; };
 tufterhandout = derive { name="tufterhandout"; version="1.2.1"; sha256="04fvvbx69a28nk7i4wz5ynamz1yvsa2ibz542r1xaq1ikk0ywqbw"; depends=[knitr rmarkdown]; };
 tumblR = derive { name="tumblR"; version="1.1"; sha256="0gl6q6rff9bp21gvi3bz8kmwbhimxqrv1mmzwshl1ys9r7d4dvps"; depends=[httr RCurl RJSONIO stringr]; };
+tumgr = derive { name="tumgr"; version="0.0.2"; sha256="1vnknvl9xim84iv3hfjpb8yw7jf638qxz8j79w47hlqwj3qn7alq"; depends=[minpack_lm]; };
 tuneR = derive { name="tuneR"; version="1.2.1"; sha256="1f6mdkfwfy6r62sbwq37sylvcji6f3mj9w13sgicxjn6swbszf57"; depends=[signal]; };
 tuple = derive { name="tuple"; version="0.4-02"; sha256="0fm8fsdfiwknjpc20ivi5m5b19r9scdxhzij70l8qi3ixw1f0rnk"; depends=[]; };
 turboEM = derive { name="turboEM"; version="2014.8-1"; sha256="0g9nm1m542hslz8272n5qz6h59criyf71l2w218dvq34bcjcd3yy"; depends=[doParallel foreach iterators numDeriv quantreg]; };
@@ -6624,20 +6647,22 @@ txtplot = derive { name="txtplot"; version="1.0-3"; sha256="1949ab1bzvysdb79g8x1
 ucbthesis = derive { name="ucbthesis"; version="1.0"; sha256="0l855if3a7862lxlnkbx52qa617mby634sbb2gkprj21rwd7lcbp"; depends=[knitr stringr]; };
 ucminf = derive { name="ucminf"; version="1.1-3"; sha256="19gmbz32rhrdagvhf2s901lvi1r6273wzznry5daryq6w1jx5z3v"; depends=[]; };
 udunits2 = derive { name="udunits2"; version="0.6"; sha256="1dlxcx7yw7yqpimnfikdraqcmjsjz7js0j24li0879dzwrqa27ja"; depends=[]; };
-ump = derive { name="ump"; version="0.5-4"; sha256="05nd9bnysp8gaw916h7hk425banffcm0xfygalbp7brl71q0zby6"; depends=[]; };
-unbalanced = derive { name="unbalanced"; version="1.1"; sha256="0crkykmyxbag4ri2zikz4r22bf92r3v6q1lfdcvwdvv27slhyfn2"; depends=[FNN RANN]; };
+ump = derive { name="ump"; version="0.5-6"; sha256="1nd6miz9scc6llckafl73pxiqh0ycfhlsmn2l0swcvjxpj3kb0zv"; depends=[]; };
+unbalanced = derive { name="unbalanced"; version="2.0"; sha256="18hy9nnq42s1viij0a5i9wzrrfmmbf7y3yzjzymz2wnrx4f2pqwv"; depends=[doParallel FNN foreach mlr RANN]; };
 unbalhaar = derive { name="unbalhaar"; version="2.0"; sha256="0v6bkin1cakwl9lmv49s0jnccl9d6vdslbi1a7kfvmr5dgy760hs"; depends=[]; };
+unfoldr = derive { name="unfoldr"; version="0.3"; sha256="1zc2a4c228lhflsiypn8z6yn3fl0hr3dpmpzdxfrrijzbfai9215"; depends=[]; };
 uniCox = derive { name="uniCox"; version="1.0"; sha256="1glgk6k8gwxk3haqaswd2gmr7a2hgwjkwk2i1qc5ya7gg8svyavv"; depends=[survival]; };
 uniReg = derive { name="uniReg"; version="1.0"; sha256="1xl19dqnxxibgiiny9ysll2z8j1i70qrszf4xbacq1a6z31vm840"; depends=[DoseFinding MASS mvtnorm quadprog SEL]; };
 uniftest = derive { name="uniftest"; version="1.1"; sha256="0a37m7l3lc6rznx10w9h9krnn5paim2i2wvw47ckwag7bv0d4pm4"; depends=[orthopolynom]; };
 uniqtag = derive { name="uniqtag"; version="1.0"; sha256="025q71mzdv3n1jw1fa37bbw8116msnfzcia01p1864si04ch5358"; depends=[]; };
+uniqueAtomMat = derive { name="uniqueAtomMat"; version="0.1-0"; sha256="0fizkxxppq00ngqvag4zbk6x7jpv6blgjr3w4p5iqc5p615z2yrb"; depends=[]; };
 unittest = derive { name="unittest"; version="1.2-0"; sha256="1g3f36kikxrzsiyhwpl73q2si5k28drcwvvrqzsqmfyhbjb14555"; depends=[]; };
 unmarked = derive { name="unmarked"; version="0.10-6"; sha256="07mw9rg4i81fqdkgkpcb7kd7235hn4nyxpbf5b8vxzsly81ffpz7"; depends=[lattice plyr Rcpp RcppArmadillo reshape]; };
 untb = derive { name="untb"; version="1.7-2"; sha256="1ha0xj94sz1r325qb4sb5hla9hw1gbqr76703vk792x9696skhji"; depends=[Brobdingnag partitions polynom]; };
 upclass = derive { name="upclass"; version="2.0"; sha256="0jkxn6jgglw6pzzbcvi1pnq4hwfach3xbi13zwml4i83s3n5b0vg"; depends=[mclust]; };
 uplift = derive { name="uplift"; version="0.3.5"; sha256="11xikfmg6dg8mhwqq6wq9j9aw4ljh84vywpm9v0fk8r5a1wyy2f6"; depends=[coin MASS penalized RItools tables]; };
 urca = derive { name="urca"; version="1.2-8"; sha256="0gyjb99m6w6h701vmsav16jpfl5276vlyaagizax8k20ns9ddl4b"; depends=[nlme]; };
-urltools = derive { name="urltools"; version="1.1.0"; sha256="0l0fqc1zvn8ps1cxxnpglbyfdwibyxaj3c2ivz8js8vphcr5i9zp"; depends=[Rcpp]; };
+urltools = derive { name="urltools"; version="1.2.0"; sha256="0fn84xb9yykpl2lccl75f675braaswfsr8p17grvnaplf8hpl8gj"; depends=[Rcpp]; };
 usdm = derive { name="usdm"; version="1.1-12"; sha256="0padc9ppfisnjg1nzw5csv2zki6dby7487lis8pixf1hhbinsnci"; depends=[raster]; };
 useful = derive { name="useful"; version="1.1.8"; sha256="1lzl7rr9qxqa0ga6ml7qi7wi02fd4isgpfskvi3igy10iw1zv3hb"; depends=[ggplot2 plyr scales]; };
 userfriendlyscience = derive { name="userfriendlyscience"; version="0.3-0"; sha256="0gz59n315dbjlyh6fdqihr1x458wplnd43q2gw9s6f9b55359m2c"; depends=[car fBasics foreign GGally ggplot2 GPArotation knitr lavaan ltm MASS MBESS mosaic plyr psych pwr SuppDists xtable]; };
@@ -6649,26 +6674,24 @@ uuid = derive { name="uuid"; version="0.1-1"; sha256="1b35h2n86233zb6dwkgxxlvnll
 vacem = derive { name="vacem"; version="0.1-1"; sha256="0lh32hj4g1hsa45v6pmfyj1hw0klk8gr1k451lvs4hzpkkcwkqbn"; depends=[foreach]; };
 varComp = derive { name="varComp"; version="0.1-360"; sha256="18xazjx102j6v1jgswxjdqjb0hq6hd646yhwb7bcplqyls9hzha0"; depends=[CompQuadForm MASS Matrix mvtnorm nlme quadprog RLRsim SPA3G]; };
 varSelRF = derive { name="varSelRF"; version="0.7-5"; sha256="1800d9vvkqpxjvmiqdr610hw7ji79j0wsbl823s097dndmv51axk"; depends=[randomForest]; };
-varSelectIP = derive { name="varSelectIP"; version="0.2-1"; sha256="180lzsg48hnlcmhpk0a5yzmy2syw8yr7f5npnyspx3897hjag1vp"; depends=[MASS mvtnorm]; };
 varbvs = derive { name="varbvs"; version="1.0"; sha256="0ywgb6ibijffjjzqqb5lvh1lk5qznwwiq7kbsyzkwcxbp8xkabjw"; depends=[]; };
-vardiag = derive { name="vardiag"; version="0.2-0"; sha256="0avj900zx4nr67dk08n0n6arxx2cb2ymm0kd5xxnzsmyrmwm40mm"; depends=[]; };
+vardiag = derive { name="vardiag"; version="0.2-1"; sha256="07i0wv84sw035bpjil3cfw69fdgbcf2j8wq4k22narkrz83iyi2z"; depends=[]; };
 vardpoor = derive { name="vardpoor"; version="0.3.2"; sha256="0vb684yhvafdmzphx4vv8gqih10x3mj8vmwshppwfgd3jp76dnps"; depends=[data_table foreach gdata laeken MASS plyr reshape2 stringr]; };
 vars = derive { name="vars"; version="1.5-2"; sha256="1q45z5b07ww4nafrvjl48z0w1zpck3cd8fssgwgh4pw84id3dyjh"; depends=[lmtest MASS sandwich strucchange urca]; };
 vartors = derive { name="vartors"; version="0.2.6"; sha256="04dynqs903clllk9nyynh3dr7msxn5rr5jmw6ql86ppd5w3da0rl"; depends=[]; };
 vbdm = derive { name="vbdm"; version="0.0.4"; sha256="1rbff0whhbfcf6q5wpr3ws1n4n2kcr79yifcni12vxg69a3v6dd3"; depends=[]; };
 vbsr = derive { name="vbsr"; version="0.0.5"; sha256="1avskbxxyinjjdga4rnghcfvd4sypv4m39ysfaij5avvmi89bx3b"; depends=[]; };
-vcd = derive { name="vcd"; version="1.4-0"; sha256="0gp137hlkg1wm8bhfdpswz0g05a4biprfa5r9i1fz5w0myqgpxca"; depends=[colorspace lmtest MASS]; };
+vcd = derive { name="vcd"; version="1.4-1"; sha256="1529q8gysqzpgphsnqdwqqr630i4k1kr0zdbmxqq5wpy5r97fk5g"; depends=[colorspace lmtest MASS]; };
 vcdExtra = derive { name="vcdExtra"; version="0.6-8"; sha256="00nxvq5fn5il3lmip8ag22cqc2sxlbl1rqw5zxp309wp4nrm5i2v"; depends=[gnm MASS vcd]; };
 vcrpart = derive { name="vcrpart"; version="0.3-3"; sha256="0rnf9cwynfwr956hwj4kxqiqq3cdw4wf5ia73s7adxixh5kpqxqa"; depends=[nlme numDeriv partykit rpart sandwich strucchange ucminf zoo]; };
 vdg = derive { name="vdg"; version="1.1"; sha256="08bl7835m5c62lgaghgnd80zlbic6i80sjfxdr39a715bxpr8g3b"; depends=[ggplot2 gridExtra proxy quantreg]; };
 vdmR = derive { name="vdmR"; version="0.1.1"; sha256="0hmn7xgi1dzril6jdwxkpxp8isin0kxn3yb5fmcyfjhf03kcv4d4"; depends=[dplyr GGally ggplot2 gridSVG maptools plyr rjson Rook]; };
 vec2dtransf = derive { name="vec2dtransf"; version="1.1"; sha256="029xynay9f9rn0syphh2rhd3szv50ib4r0h0xfhhvbbb37h5dc9s"; depends=[sp]; };
 vecsets = derive { name="vecsets"; version="1.1"; sha256="0k27g3frc9y9z2qlm19kfpls6wl0422dilhdlk6096f1fp3mc6ij"; depends=[]; };
-vectoptim = derive { name="vectoptim"; version="0.2"; sha256="1n19sipx5r0qy08jmrbsrf0kgwgl31np88wc1zyc2bkx8h1zkmf2"; depends=[doParallel foreach]; };
 vegan = derive { name="vegan"; version="2.3-0"; sha256="1zlz2zq0818735db4l8gfwwxxd5dc0xnx6v8cq6mfclkw1qhcdpx"; depends=[cluster lattice MASS mgcv permute]; };
 vegan3d = derive { name="vegan3d"; version="0.65-1"; sha256="03rzv7l2jjrahj3492ysalyizkv24by35nrhd1bnlb1s88sav7sr"; depends=[rgl scatterplot3d vegan]; };
 vegclust = derive { name="vegclust"; version="1.6.3"; sha256="0l6j4sgzfqvcypx2dszpnsd1sivk33pixlgf9abqifp45skpkwfg"; depends=[sp vegan]; };
-vegdata = derive { name="vegdata"; version="0.6.9"; sha256="1a8b8wwsxq8090cj8pxw1digllmc2rnby8immjfmbi5rzjbksgi3"; depends=[foreign XML]; };
+vegdata = derive { name="vegdata"; version="0.7"; sha256="1h0prrpsiywqx2h49hrr3h9i4515vbgqb2yxfpp81zv2pipa353b"; depends=[foreign XML]; };
 vegetarian = derive { name="vegetarian"; version="1.2"; sha256="15ys1m8p3067dfsjwz6ds837n6rqd19my23yj8vw78xli3qmn445"; depends=[]; };
 venneuler = derive { name="venneuler"; version="1.1-0"; sha256="10fviqv9vr7zkmqm6iy2l9bjxglf2ljb7sx423vi4s9vffcxjp17"; depends=[rJava]; };
 verification = derive { name="verification"; version="1.41"; sha256="1c8l0kqk02xijr4yhgpmhlqsflm3wizybkwpzmlnfanh8vzn49g2"; depends=[boot CircStats dtw fields MASS]; };
@@ -6678,6 +6701,7 @@ violinmplot = derive { name="violinmplot"; version="0.2.1"; sha256="1j3hb03y988x
 vioplot = derive { name="vioplot"; version="0.2"; sha256="16wkb26kv6qr34hv5zgqmgq6zzgysg9i78pvy2c097lr60v087v0"; depends=[sm]; };
 viopoints = derive { name="viopoints"; version="0.2-1"; sha256="0cpbkkzm1rxch8gnvlmmzy8g521f5ang3nhlcnin419gha0w6avf"; depends=[]; };
 virtualspecies = derive { name="virtualspecies"; version="1.1"; sha256="0znrb6xqyzddd1r999rhx6ix6wgpj1laf5bcns7zgmq6zb39j74s"; depends=[ade4 dismo raster rworldmap]; };
+visNetwork = derive { name="visNetwork"; version="0.0.4"; sha256="0609zg6n8f0nddzvwm6bhi1xysxw2z197jvidycwd45f68qfg0ld"; depends=[htmlwidgets magrittr rjson]; };
 visreg = derive { name="visreg"; version="2.2-0"; sha256="1hnyrfgyk5fign5l35aql2q7q4mmw3jby5pkv696h8k1mc8qq096"; depends=[lattice]; };
 visualFields = derive { name="visualFields"; version="0.4.2"; sha256="14plg94g4znl8n6798na2rivjjamjgayqkk1qwn1nx5df040l4q5"; depends=[flip gridBase Hmisc matrixStats]; };
 visualize = derive { name="visualize"; version="4.2"; sha256="1jgk7j0f3p72wbqnmplrgpy7hlh7k2cmvx83gr2zfnbhygdi22mk"; depends=[]; };
@@ -6697,7 +6721,6 @@ wahc = derive { name="wahc"; version="1.0"; sha256="1324xhajgmxq6dxzpnkcvxdpm2m3
 walkscoreAPI = derive { name="walkscoreAPI"; version="1.2"; sha256="1c2gfkl5yl3mkviah8s8zjnqk6lnzma1yilxgfxckdh5wywi39fx"; depends=[]; };
 wasim = derive { name="wasim"; version="1.1.2"; sha256="1zydzw7cihhdwv0474fnc4lgaq5fwrv8jinz79vkbidbgcy7i2fd"; depends=[fast MASS qualV tiger]; };
 waterData = derive { name="waterData"; version="1.0.4"; sha256="0wk49f079jfbjncyirdvq50wswf9g361iivshjfhyndv83gbqrzk"; depends=[lattice latticeExtra XML]; };
-waterfall = derive { name="waterfall"; version="0.9.9.20121030"; sha256="140s5639ayd9qgn4i1s1qk541vi34ndzdcqpaps7q53g42n8akfw"; depends=[lattice]; };
 waveband = derive { name="waveband"; version="4.6"; sha256="1y2qi2zb8l2ap6f8ihnpq2yavic464bl5mp5yv1dscbk0nmfn966"; depends=[wavethresh]; };
 waved = derive { name="waved"; version="1.1-2"; sha256="17pr9qhz0dbbcr78vwm964d9zd7yrfrqvadr1lwf756bsrscmlg3"; depends=[]; };
 wavelets = derive { name="wavelets"; version="0.3-0"; sha256="141s7z7wxl5plxp7xp7wczswlcvb18a4h3n881l9qc4ny9p7gfpa"; depends=[]; };
@@ -6709,16 +6732,16 @@ weatherData = derive { name="weatherData"; version="0.4.1"; sha256="19ynb9w52ay1
 webchem = derive { name="webchem"; version="0.0.1"; sha256="0hfsjaffxz78mxxh2wx5api2blnpg5y16lyc0jf1zmq7zkhccx3l"; depends=[RCurl RJSONIO XML]; };
 webutils = derive { name="webutils"; version="0.3"; sha256="1wzpwigc5mmdnz453qr4s1viaslgdrcg238n25qcg4xjakmnxrss"; depends=[jsonlite]; };
 webvis = derive { name="webvis"; version="0.0.2"; sha256="1cdn9jrpg2sbx4dsj0xf7m0daqr7fqiw3xy1lg0i0qn9cpvi348f"; depends=[]; };
-weightedKmeans = derive { name="weightedKmeans"; version="1.2.0"; sha256="140cvl1jwwqyvcsf7pbsxh9k4bynd7c1q159pp7ia1f1sgimxafb"; depends=[clv lattice latticeExtra]; };
 weightedScores = derive { name="weightedScores"; version="0.9.1"; sha256="0wd2ymxy8yh3l4xd3xgifbihi89h53wy6n84x7x26px12c70q8fa"; depends=[mvtnorm rootSolve]; };
 weights = derive { name="weights"; version="0.80"; sha256="147fgs99sg1agq081ikj2fhb4b2vzsppdg1h1w036bb92vsjb0g5"; depends=[gdata Hmisc]; };
 weirs = derive { name="weirs"; version="0.24"; sha256="15iffimdr01m92wq6srb49vf900c3cbipj99sk7rxbqbdzbb0y6g"; depends=[]; };
 wesanderson = derive { name="wesanderson"; version="0.3.2"; sha256="17acf9ydi2sw7q887ni9ly12mdmip66ix6gdkh68rncj8sx3csrd"; depends=[]; };
 wfe = derive { name="wfe"; version="1.3"; sha256="16b39i60x10kw6yz44ff19h638s9lsgnz8azc76zl9b8s64jliya"; depends=[arm MASS Matrix]; };
-wgaim = derive { name="wgaim"; version="1.4-8"; sha256="1x1dgxw1viswdqd1k1gfbpipzhgy13lhncji0wlsgpcgfa40ap1a"; depends=[lattice qtl]; };
+wgaim = derive { name="wgaim"; version="1.4-10"; sha256="0wf6j7f7hn2cnsb9yi28rjl7sa60zjggg62i00039b7gxcznxj1r"; depends=[lattice qtl]; };
 wgsea = derive { name="wgsea"; version="1.8"; sha256="1114wik011sm2n12bwm2bhqvdxagbhbscif45k4pgxdkahy2abpi"; depends=[snpStats]; };
 whisker = derive { name="whisker"; version="0.3-2"; sha256="0z4cn115gxcl086d6bnqr8afi67b6a7xqg6ivmk3l4ng1x8kcj28"; depends=[]; };
 whoami = derive { name="whoami"; version="1.1.0"; sha256="15mj1s0dfr9y14b23nx0506r0vz48bm1f6mf0fi7b390q0zmndq7"; depends=[httr jsonlite]; };
+whoapi = derive { name="whoapi"; version="0.1.0"; sha256="01hi47da4i482ma7fzyk7ivs0xalinh7g9hjkynk9kr7xq1dj8ci"; depends=[httr]; };
 widals = derive { name="widals"; version="0.5.4"; sha256="1bl59s1r4gkvq4nkf94fk7m0zvhbrszkgmig66lfxhyvk9r84fvb"; depends=[snowfall]; };
 widenet = derive { name="widenet"; version="0.1-2"; sha256="1nimm8szbg82vg00f5c7b3f3sk0gplssbl4ggasjnh7dl621vfny"; depends=[glmnet relaxnet]; };
 wikibooks = derive { name="wikibooks"; version="0.2"; sha256="178lhri1b8if2j7y7l9kqgyvmkn4z0bxp5l4dmm97x3pav98c7ks"; depends=[]; };
@@ -6744,8 +6767,8 @@ wrassp = derive { name="wrassp"; version="0.1.3"; sha256="1xza4w5dgc6gda9ybmq386
 write_snns = derive { name="write.snns"; version="0.0-4.2"; sha256="0sxg7z8rnh4lssbivkrfxldv4ivy37wkndzzndpbvq2gbvbjnp4l"; depends=[]; };
 wrspathrow = derive { name="wrspathrow"; version="0.1"; sha256="1xkh12aal85qhk8d0pdj2qbi6pp4jnr6zbxkhdw2zwav57ly3f4i"; depends=[raster rgdal rgeos sp wrspathrowData]; };
 wrspathrowData = derive { name="wrspathrowData"; version="1.0"; sha256="0a1aggcll0fmkwfg4h7rs4j5h3v1bh95dkbriwrb0bx0cikg63x3"; depends=[]; };
-wskm = derive { name="wskm"; version="1.4.19"; sha256="16smir0b4pxkaxgr2vclq8kprpwn0y3fb43ba79q94d6m5hm844y"; depends=[clv lattice latticeExtra]; };
-wsrf = derive { name="wsrf"; version="1.5.14"; sha256="0j0zlnazz40sv02fl8m5z7rv877m6ak2cms2q3ivy344k8ynjs0m"; depends=[Rcpp]; };
+wskm = derive { name="wskm"; version="1.4.28"; sha256="0d9hcriakg6fxzc8wjsahc4zkyjza31mb9dv2h4xcf8298xa96i4"; depends=[clv lattice latticeExtra]; };
+wsrf = derive { name="wsrf"; version="1.5.24"; sha256="0wgc4whxfsdl5wcr2i6bj9nvn49kfg35ldl7s8ca9aqmii7m5rzl"; depends=[Rcpp]; };
 wtcrsk = derive { name="wtcrsk"; version="1.3"; sha256="1viddyms2d9q2hb9z788fcs8vp7gp6vzlsszcnyxgganfjsd85zy"; depends=[]; };
 wux = derive { name="wux"; version="2.0-2"; sha256="0y0pn1hr94wgr6v8xac4hf3g137rx1zr1vdplgpjz1k5v41xvagk"; depends=[abind class corpcor fields gdata Hmisc ncdf reshape rgdal rgeos rworldmap sp stringr]; };
 x_ent = derive { name="x.ent"; version="1.1.2"; sha256="0wbbhsnlm5yln72h648nz3y5w83kq9qvpw0pk56lsc1bafps712p"; depends=[ggplot2 jsonlite opencpu rJava statmod stringr venneuler xtable]; };
@@ -6769,7 +6792,7 @@ yacca = derive { name="yacca"; version="1.1"; sha256="0wg2wgvh1najmccmgzyigj11ms
 yaml = derive { name="yaml"; version="2.1.13"; sha256="18kz5mfn7qpif5pn91w4vbrc5bkycsj85vwm5wxwzjlb02i9mxi6"; depends=[]; };
 ycinterextra = derive { name="ycinterextra"; version="0.1"; sha256="0hr37izbbmxqkjy6a7q8vcn0vs8an1ck9y8xfjpl5z0rygi8xc1v"; depends=[mcGlobaloptim]; };
 yhat = derive { name="yhat"; version="2.0-0"; sha256="0vdhkknmms7zy7iha894jn1hr1h5w67pr53r0q67m7p404w21iza"; depends=[boot miscTools plotrix yacca]; };
-yhatr = derive { name="yhatr"; version="0.13.4"; sha256="1z1i48nhyadn1l00sw50qif2zyjvy1jbvq91chnapfdbjjsgfv2x"; depends=[httr jsonlite plyr RCurl rjson stringr]; };
+yhatr = derive { name="yhatr"; version="0.13.6"; sha256="0g08ass0vrqcmw1zfybiaqbrspcwyf4bsmcmzbz3nzdlkgwbn3bh"; depends=[httr jsonlite plyr RCurl rjson stringr]; };
 ykmeans = derive { name="ykmeans"; version="1.0"; sha256="0xfji2fmslvc059kk3rwkv575ffzl787sa9d4vw5hxnsmkn8lq50"; depends=[foreach plyr]; };
 yuima = derive { name="yuima"; version="1.0.71"; sha256="0aqb87jlvlq6iw2mlngiylvayd6y2wrc82zl1za442gqq8py00if"; depends=[cubature expm mvtnorm zoo]; };
 zCompositions = derive { name="zCompositions"; version="1.0.3"; sha256="0lxy201ys9dvv8c09q8wbks1c2jkjyd1bbrxhjr7zi9j7m0parl7"; depends=[MASS NADA truncnorm]; };
@@ -6785,5 +6808,5 @@ zooaRch = derive { name="zooaRch"; version="1.0"; sha256="1krzwrk2cknlsmd3hn8c2l
 zooimage = derive { name="zooimage"; version="3.0-5"; sha256="1r3slmyw0dyqfa40dr5xga814z09ibhmmby8p1cii5lh61xm4c39"; depends=[filehash jpeg mlearning png svDialogs svMisc]; };
 zoom = derive { name="zoom"; version="2.0.4"; sha256="03f5rxfr6ncf1j6vpn7pip21q7ylj4bx0a5xphqb6x6i33lxf1g5"; depends=[]; };
 ztable = derive { name="ztable"; version="0.1.5"; sha256="1jfqnqy9544gfvz3bsb48v4177nwp4b4n9l2743asq8sbq305b5r"; depends=[]; };
-zyp = derive { name="zyp"; version="0.10-1"; sha256="0f1fqqxysf3psnvn08s5qly2c958h1hhznjjj8mvpjr5g6hqlr1k"; depends=[Kendall]; };
+zyp = derive { name="zyp"; version="0.10-1"; sha256="0f1fqqxysf3psnvn08s5qly2c958h1hhznjjj8mvpjr5g6hqlr1k"; depends=[Kendall]; }; 
 }
diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix
index 34dbf4cba523..ab50d9d0c3c5 100644
--- a/pkgs/development/r-modules/default.nix
+++ b/pkgs/development/r-modules/default.nix
@@ -334,6 +334,7 @@ let
     sprint = [ pkgs.openmpi ];
     ssanv = [ pkgs.proj ];
     stsm = [ pkgs.gsl ];
+    stringi = [ pkgs.icu ];
     survSNP = [ pkgs.gsl ];
     sysfonts = [ pkgs.zlib pkgs.libpng pkgs.freetype ];
     TAQMNGR = [ pkgs.zlib ];
@@ -417,7 +418,6 @@ let
     "BEQI2"
     "betapart"
     "betaper"
-    "BHMSMAfMRI"
     "BiodiversityR"
     "BioGeoBEARS"
     "bio_infer"
@@ -607,7 +607,6 @@ let
     "rgl"
     "RHRV"
     "rich"
-    "ringscale"
     "rioja"
     "ripa"
     "rite"
@@ -1155,7 +1154,6 @@ let
     "immunoClust" # build is broken
     "imputeR" # depends on broken package nlopt-2.4.2
     "in2extRemes" # depends on broken package nlopt-2.4.2
-    "incReg" # depends on broken package nlopt-2.4.2
     "inferference" # depends on broken package nlopt-2.4.2
     "influence_ME" # depends on broken package nlopt-2.4.2
     "inSilicoMerging" # build is broken
diff --git a/pkgs/development/tools/activator/default.nix b/pkgs/development/tools/activator/default.nix
index 72bed9d46ca8..9d187b1018ce 100644
--- a/pkgs/development/tools/activator/default.nix
+++ b/pkgs/development/tools/activator/default.nix
@@ -4,11 +4,11 @@ stdenv.mkDerivation rec {
 
   name = "${pname}-${version}";
   pname = "activator";
-  version = "1.3.2";
+  version = "1.3.5";
 
   src = fetchurl {
     url = "http://downloads.typesafe.com/typesafe-${pname}/${version}/typesafe-${name}.zip";
-    sha256 = "0a6x4w63829fbp13gk1l37p6di11lfmgla26gqnr065vzpkg90y6";
+    sha256 = "19mcrp1ky652wwh3360ia0irc0c2xjcnn9rdal1rmkkzsqn4jx0b";
   };
 
   buildInputs = [ unzip jre ];
diff --git a/pkgs/development/tools/build-managers/cargo/default.nix b/pkgs/development/tools/build-managers/cargo/default.nix
index e7a45f1c3484..d849ad5de944 100644
--- a/pkgs/development/tools/build-managers/cargo/default.nix
+++ b/pkgs/development/tools/build-managers/cargo/default.nix
@@ -1,7 +1,7 @@
 { stdenv, fetchgit, rustPlatform, file, curl, python, pkgconfig, openssl
 , cmake, zlib }:
 
-with ((import ./common.nix) { inherit stdenv; version = "2015-05-13"; });
+with ((import ./common.nix) { inherit stdenv; version = "0.3.0"; });
 
 with rustPlatform;
 
@@ -10,12 +10,12 @@ buildRustPackage rec {
 
   src = fetchgit {
     url = "https://github.com/rust-lang/cargo.git";
-    rev = "d814fcbf8efda3027d54c09e11aa7eaf0006a83c";
-    sha256 = "0sppd3x2cacmbnypcjip44amnh66lrrbwwzsbz8rqf3nq2ah496x";
+    rev = "refs/tags/0.3.0";
+    sha256 = "1ckb2xd7nm8357imw6b1ci2ar8grnihzan94kvmjrijq6sz8yv9i";
     leaveDotGit = true;
   };
 
-  depsSha256 = "1b0mpdxmp7inkg59n2phjwzpz5gx22wqg9rfd1s01a5ylara37jw";
+  depsSha256 = "1sgdr2akd9xrfmf5g0lbf842b2pdj1ymxk37my0cf2x349rjsf0w";
 
   buildInputs = [ file curl pkgconfig python openssl cmake zlib ];
 
diff --git a/pkgs/development/tools/build-managers/cargo/snapshot.nix b/pkgs/development/tools/build-managers/cargo/snapshot.nix
index a76fb4601e8b..f24bcc2d9ab8 100644
--- a/pkgs/development/tools/build-managers/cargo/snapshot.nix
+++ b/pkgs/development/tools/build-managers/cargo/snapshot.nix
@@ -2,19 +2,19 @@
 
 /* Cargo binary snapshot */
 
-let snapshotDate = "2015-04-02";
+let snapshotDate = "2015-06-17";
 in
 
 with ((import ./common.nix) { inherit stdenv; version = "snapshot-${snapshotDate}"; });
 
 let snapshotHash = if stdenv.system == "i686-linux"
-      then "ba6c162680d5509d89ba2363d7cae2047f40c034"
+      then "g2h9l35123r72hqdwayd9h79kspfb4y9"
       else if stdenv.system == "x86_64-linux"
-      then "94f715c9a52809a639f2ce6f8b1d5215a0c272b5"
+      then "fnx2rf1j8zvrplcc7xzf89czn0hf3397"
       else if stdenv.system == "i686-darwin"
-      then "cf333f16f89bfd50e8ce461c6f81ca30d33f7f73"
+      then "3viz3fi2jx18qjwrc90nfhm9cik59my6"
       else if stdenv.system == "x86_64-darwin"
-      then "1f7008a6ec860e2bc7580e71bdf320ac518ddeb8"
+      then "h2bf3db4vwz5cjjkn98lxayivdc6dflp"
       else throw "no snapshot for platform ${stdenv.system}";
     snapshotName = "cargo-nightly-${platform}.tar.gz";
 in
diff --git a/pkgs/development/tools/database/sqlitebrowser/default.nix b/pkgs/development/tools/database/sqlitebrowser/default.nix
new file mode 100644
index 000000000000..e5c2060b5e9b
--- /dev/null
+++ b/pkgs/development/tools/database/sqlitebrowser/default.nix
@@ -0,0 +1,23 @@
+{ stdenv, fetchzip, qt4, sqlite, cmake }:
+
+stdenv.mkDerivation rec {
+  version = "3.7.0";
+  name = "sqlitebrowser-${version}";
+
+  src = fetchzip {
+    name = "${name}-src";
+    url = "https://github.com/sqlitebrowser/sqlitebrowser/archive/v${version}.tar.gz";
+    sha256 = "1zsgylnxk4lyg7p6k6pv8d3mh1k0wkfcplh5c5da3x3i9a3qs78j";
+  };
+
+  buildInputs = [ qt4 sqlite cmake ];
+
+  meta = with stdenv.lib; {
+    description = "DB Browser for SQLite";
+    homepage = "http://sqlitebrowser.org/";
+    license = licenses.gpl3;
+    maintainers = [ maintainers.matthiasbeyer ];
+    platforms = platforms.linux; # can only test on linux
+  };
+}
+
diff --git a/pkgs/development/tools/misc/pahole/default.nix b/pkgs/development/tools/misc/pahole/default.nix
new file mode 100644
index 000000000000..739cc7e5143d
--- /dev/null
+++ b/pkgs/development/tools/misc/pahole/default.nix
@@ -0,0 +1,27 @@
+{ stdenv, fetchgit, cmake, elfutils, zlib }:
+
+stdenv.mkDerivation {
+  name = "pahole-head";
+  src = fetchgit {
+    url = https://git.kernel.org/pub/scm/devel/pahole/pahole.git;
+    sha256 = "05f8a14ea6c200c20e9c6738593b38e4ced73a9cef86499ccd7af910eb9b74b3";
+    rev = "1decb1bc4a412a0902b7b25190d755a875022d03";
+  };
+  buildInputs = [ cmake elfutils zlib ];
+
+  postInstall = ''
+    for p in $out/bin/*; do
+      rpath=`patchelf --print-rpath $p`:$out
+      patchelf --set-rpath $rpath $p
+    done
+  '';
+
+  meta = with stdenv.lib; {
+    homepage = https://git.kernel.org/cgit/devel/pahole/pahole.git/;
+    description = "Pahole and other DWARF utils";
+    license = licenses.gpl2;
+
+    platforms = platforms.linux;
+    maintainers = [ maintainers.bosu ];
+  };
+}
diff --git a/pkgs/development/tools/vagrant/default.nix b/pkgs/development/tools/vagrant/default.nix
index 16b6981fdb8c..97136aa255ee 100644
--- a/pkgs/development/tools/vagrant/default.nix
+++ b/pkgs/development/tools/vagrant/default.nix
@@ -4,7 +4,7 @@
 assert stdenv.system == "x86_64-linux" || stdenv.system == "i686-linux";
 
 let
-  version = "1.7.2";
+  version = "1.7.3";
   rake = buildRubyGem {
     inherit ruby;
     name = "rake-10.3.2";
@@ -19,12 +19,12 @@ stdenv.mkDerivation rec {
     if stdenv.system == "x86_64-linux" then
       fetchurl {
         url    = "https://dl.bintray.com/mitchellh/vagrant/vagrant_${version}_x86_64.deb";
-        sha256 = "0s1rwzpcp0nc7v04fvbd5vsqfm79q2v23sr9ahniw09lf5c1qzwx";
+        sha256 = "0zg2sdxgrmwqvzqw4z8d6ji8d0cby33nggv0n9ncjxp0wjiv8nkm";
       }
     else
       fetchurl {
         url    = "https://dl.bintray.com/mitchellh/vagrant/vagrant_${version}_i686.deb";
-        sha256 = "1yj8iyhsgj6j3r7p3ppmsz01j6vnxqb18rjhsbp2sz45kbfs1wxz";
+        sha256 = "0r23w49jwl3c3g4nns5xnrsrqyfkqsgln91cj30hxkw50d0ldpvs";
       };
 
   meta = with stdenv.lib; {
diff --git a/pkgs/development/web/iojs/default.nix b/pkgs/development/web/iojs/default.nix
index 6fef81300aba..1f7db61090ec 100644
--- a/pkgs/development/web/iojs/default.nix
+++ b/pkgs/development/web/iojs/default.nix
@@ -1,14 +1,14 @@
 { stdenv, fetchurl, python, utillinux, openssl_1_0_2, http-parser, zlib, libuv }:
 
 let
-  version = "2.3.3";
+  version = "2.3.4";
   inherit (stdenv.lib) optional maintainers licenses platforms;
 in stdenv.mkDerivation {
   name = "iojs-${version}";
 
   src = fetchurl {
     url = "https://iojs.org/dist/v${version}/iojs-v${version}.tar.gz";
-    sha256 = "12fdz0as1sa34bq4a701qwrznpn7y1wq0yxlr5yw494ifchfm103";
+    sha256 = "1h9cjrs93c8rdycc0ahhc27wv826211aljvfmxfg8jdmg6nvibhq";
   };
 
   prePatch = ''
diff --git a/pkgs/development/web/nodejs/default.nix b/pkgs/development/web/nodejs/default.nix
index daa37d5d2467..574f0514105e 100644
--- a/pkgs/development/web/nodejs/default.nix
+++ b/pkgs/development/web/nodejs/default.nix
@@ -7,7 +7,7 @@
 assert stdenv.system != "armv5tel-linux";
 
 let
-  version = "0.12.6";
+  version = "0.12.7";
 
   deps = {
     inherit openssl zlib libuv;
@@ -31,7 +31,7 @@ in stdenv.mkDerivation {
 
   src = fetchurl {
     url = "http://nodejs.org/dist/v${version}/node-v${version}.tar.gz";
-    sha256 = "1llsl7zl3080zd7jfhhy4d5s9pnhr15niw6vivp9sflpa71mlfvs";
+    sha256 = "17gk29zbw58l0sjjfw86acp39pkiblnq0gsq1jdrd70w0pgn8gdj";
   };
 
   configureFlags = concatMap sharedConfigureFlags (builtins.attrNames deps) ++ [ "--without-dtrace" ];
diff --git a/pkgs/games/banner/default.nix b/pkgs/games/banner/default.nix
index e0dac80a8fef..329a23ae81f4 100644
--- a/pkgs/games/banner/default.nix
+++ b/pkgs/games/banner/default.nix
@@ -1,50 +1,24 @@
-{ stdenv, fetchurl, flex, bison, ncurses, buddy, tecla, libsigsegv, gmpxx, makeWrapper }:
+{ stdenv, fetchurl }:
 
-let
-  # Banner depends on two separate libraries. Adding those libraries to
-  # the top-level seems like overkill, though, because no other tools
-  # seems to use them. So we'll build them within this expression.
-  mkDerivation = name: hash: deriv: stdenv.mkDerivation (deriv // {
-    inherit name;
+stdenv.mkDerivation rec {
+  name = "banner-1.3.3";
 
-    src = fetchurl {
-      url = "http://shh.thathost.com/pub-unix/files/${name}.tar.gz";
-      sha256 = hash;
-    };
-
-    configurePhase = "make dep CC=$CC";
-
-    buildPhase = "make OPTIM='-DNDEBUG -O3' CC=$CC";
-
-    installPhase = ''
-      make INSTBASEDIR=$out install
-      if [ -d $out/man ]; then
-        mkdir -p $out/share
-	mv -v $out/man $out/share/
-      fi
-    '';
-  });
-
-  shhopt = mkDerivation "shhopt-1.1.7" "bae94335124efa6fcc2f0a55cabd68c9c90be935bcdb8054d7e5188e0d5da679" {};
-
-  shhmsg = mkDerivation "shhmsg-1.4.1" "f65d45d3a5e415b541a1975e13fe7c5b58e21df6e9306cc3f7901279a9f6d461" {};
-
-in
-
-mkDerivation "banner-1.3.2" "0dc0ac0667b2e884a7f5ad3e467af68cd0fd5917f8c9aa19188e6452aa1fc6d5" {
-  buildInputs = [shhopt shhmsg];
+  src = fetchurl {
+    url = "http://software.cedar-solutions.com/ftp/software/${name}.tar.gz";
+    sha256 = "1njbgba0gzvrmdkvfjgrnvj0i80yi8k7mpkgyxaj07bmv9kc3h5v";
+  };
 
-  meta = {
-    homepage = "http://shh.thathost.com/pub-unix/";
+  meta = with stdenv.lib; {
+    homepage = http://software.cedar-solutions.com/utilities.html;
     description = "Print large banners to ASCII terminals";
-    license = stdenv.lib.licenses.gpl2;
+    license = licenses.gpl2;
 
     longDescription = ''
       An implementation of the traditional Unix-program used to display
       large characters.
     '';
 
-    platforms = stdenv.lib.platforms.all;
-    maintainers = [ stdenv.lib.maintainers.simons ];
+    platforms = platforms.all;
+    maintainers = with maintainers; [ simons pSub ];
   };
 }
diff --git a/pkgs/games/snake4/default.nix b/pkgs/games/snake4/default.nix
new file mode 100644
index 000000000000..081604d2ce8e
--- /dev/null
+++ b/pkgs/games/snake4/default.nix
@@ -0,0 +1,27 @@
+{ stdenv, fetchurl, shhmsg, shhopt, xlibs }:
+
+stdenv.mkDerivation rec {
+  name = "snake4-1.0.14";
+
+  src = fetchurl {
+    url = "http://shh.thathost.com/pub-unix/files/${name}.tar.gz";
+    sha256 = "14cng9l857np42zixp440mbc8y5675frb6lhsds53j1cws9cncw9";
+  };
+
+  buildInputs = with xlibs; [ shhmsg shhopt libX11 libXt libXpm libXaw libXext];
+
+  preInstall = ''
+    substituteInPlace Makefile --replace "-o \$(OWNER) -g \$(GROUP)" ""
+  '';
+  
+  installFlags = [ "INSTLIBDIR=$(out)/lib"
+                   "INSTBINDIR=$(out)/bin"
+                   "INSTMANDIR=$(out)/man" ];
+
+  meta = with stdenv.lib; {
+    description = "A game starring a fruit-eating snake";
+    homepage = http://shh.thathost.com/pub-unix/html/snake4.html;
+    license = licenses.artistic1;
+    platforms = platforms.linux;
+  };
+}
diff --git a/pkgs/misc/vim-plugins/default.nix b/pkgs/misc/vim-plugins/default.nix
index 056f6d1e9d3a..bc568f739450 100644
--- a/pkgs/misc/vim-plugins/default.nix
+++ b/pkgs/misc/vim-plugins/default.nix
@@ -772,6 +772,17 @@ rec {
 
   };
 
+  changeColorScheme-vim = buildVimPluginFrom2Nix { # created by nix#NixDerivation
+    name = "changeColorScheme-vim-2010-10-17";
+    src = fetchgit {
+      url = "git://github.com/vim-scripts/changeColorScheme.vim";
+      rev = "b041d49f828629d72f2232531a230d1ec5de2405";
+      sha256 = "094ccc132dc3991a30feb31bbdd777755294957e843517491345a4999e86cb5f";
+    };
+    dependencies = [];
+
+  };
+
   tabmerge = buildVimPluginFrom2Nix { # created by nix#NixDerivation
     name = "tabmerge-2010-10-17";
     src = fetchgit {
@@ -866,6 +877,17 @@ rec {
 
   };
 
+  random-vim = buildVimPluginFrom2Nix { # created by nix#NixDerivation
+    name = "random-vim-2010-10-17";
+    src = fetchgit {
+      url = "git://github.com/vim-scripts/random.vim";
+      rev = "b2d85eb24a38074eab37a5acf2a295e1f2ad8989";
+      sha256 = "571f4ed0a2d8c66d1c15029fb812a84b55228d07cd2e4bbbc73a33493013fed3";
+    };
+    dependencies = [];
+
+  };
+
   rust = buildVimPluginFrom2Nix { # created by nix#NixDerivation
     name = "rust-2015-01-29";
     src = fetchgit {
diff --git a/pkgs/misc/vim-plugins/vim-plugin-names b/pkgs/misc/vim-plugins/vim-plugin-names
index 91d7f32fce53..f7b01d8af7f3 100644
--- a/pkgs/misc/vim-plugins/vim-plugin-names
+++ b/pkgs/misc/vim-plugins/vim-plugin-names
@@ -56,6 +56,8 @@
 "github:vim-scripts/Colour-Sampler-Pack"
 "github:vim-scripts/a.vim"
 "github:vim-scripts/align"
+"github:vim-scripts/changeColorSchemes.vim"
+"github:vim-scripts/random.vim"
 "github:vim-scripts/tabmerge"
 "github:vim-scripts/wombat256.vim"
 "github:wakatime/vim-wakatime"
diff --git a/pkgs/os-specific/linux/bluez/bluez5.nix b/pkgs/os-specific/linux/bluez/bluez5.nix
index 03c3d5943fe5..1cc990f797b6 100644
--- a/pkgs/os-specific/linux/bluez/bluez5.nix
+++ b/pkgs/os-specific/linux/bluez/bluez5.nix
@@ -5,11 +5,11 @@
 assert stdenv.isLinux;
 
 stdenv.mkDerivation rec {
-  name = "bluez-5.31";
+  name = "bluez-5.32";
    
   src = fetchurl {
     url = "mirror://kernel/linux/bluetooth/${name}.tar.xz";
-    sha256 = "13w1cdybwyb9pww64hp8dwxqq9zs58wh1mq8sslsknb6b3663dn4";
+    sha256 = "1xspdw87h2mpy5q36q7225yizgcvxlag1b8qi13h9v6b07kkakzy";
   };
 
   pythonPath = with pythonPackages;
diff --git a/pkgs/os-specific/linux/can-utils/default.nix b/pkgs/os-specific/linux/can-utils/default.nix
index 6a3fbd33d689..f181db0c5e3f 100644
--- a/pkgs/os-specific/linux/can-utils/default.nix
+++ b/pkgs/os-specific/linux/can-utils/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchgit }:
+{ stdenv, fetchFromGitHub }:
 
 stdenv.mkDerivation rec {
   name = "can-utils-${version}";
@@ -6,10 +6,11 @@ stdenv.mkDerivation rec {
   # latest commit in git master as version number.
   version = "20140227";
 
-  src = fetchgit {
-    url = "https://git.gitorious.org/linux-can/can-utils.git";
+  src = fetchFromGitHub {
+    owner = "linux-can";
+    repo = "can-utils";
     rev = "67a2bdcd336e6becfa5784742e18c88dbeddc973";
-    sha256 = "0pnnjl141wf3kbf256m6qz9mxz0144z36qqb43skialzcnlhga38";
+    sha256 = "1v73b0nk1kb3kp5nbxp4xiygny6nfjgjnm7zgzrjgryvdrnws32z";
   };
 
   preConfigure = ''makeFlagsArray+=(PREFIX="$out")'';
diff --git a/pkgs/os-specific/linux/firejail/default.nix b/pkgs/os-specific/linux/firejail/default.nix
index 99c99cd36628..af08d404b826 100644
--- a/pkgs/os-specific/linux/firejail/default.nix
+++ b/pkgs/os-specific/linux/firejail/default.nix
@@ -6,7 +6,7 @@ let
     version="0.9.26";
     name="${baseName}-${version}";
     hash="12n0kj95hfkzv4jir7j9x0mdpg20bq0fgifjsz1dbsmqi2cspdlq";
-    url="http://softlayer-ams.dl.sourceforge.net/project/firejail/firejail/firejail-0.9.26-rc2.tar.bz2";
+    url="mirror://sourceforge/firejail/firejail/firejail-0.9.26-rc2.tar.bz2";
     sha256="12n0kj95hfkzv4jir7j9x0mdpg20bq0fgifjsz1dbsmqi2cspdlq";
   };
   buildInputs = [
diff --git a/pkgs/os-specific/linux/hdparm/default.nix b/pkgs/os-specific/linux/hdparm/default.nix
index a0cd09fbf35e..538d8d4ab837 100644
--- a/pkgs/os-specific/linux/hdparm/default.nix
+++ b/pkgs/os-specific/linux/hdparm/default.nix
@@ -1,11 +1,11 @@
 { stdenv, fetchurl }:
 
 stdenv.mkDerivation rec {
-  name = "hdparm-9.45";
+  name = "hdparm-9.48";
 
   src = fetchurl {
     url = "mirror://sourceforge/hdparm/${name}.tar.gz";
-    sha256 = "0sc6yf3k6sd7n6a2ig2my9fjlqpak3znlyw7jw4cz5d9asm1rc13";
+    sha256 = "1vpvlkrksfwx8lxq1p1nk3ddyzgrwy3rgxpn9kslchdh3jkv95yf";
   };
 
   preBuild = ''
diff --git a/pkgs/os-specific/linux/jool/cli.nix b/pkgs/os-specific/linux/jool/cli.nix
new file mode 100644
index 000000000000..8fb37ed1c5b8
--- /dev/null
+++ b/pkgs/os-specific/linux/jool/cli.nix
@@ -0,0 +1,22 @@
+{ stdenv, fetchzip, autoreconfHook, pkgconfig, libnl }:
+
+let
+  sourceAttrs = (import ./source.nix) { inherit fetchzip; };
+in
+
+stdenv.mkDerivation {
+  name = "jool-cli-${sourceAttrs.version}";
+
+  src = sourceAttrs.src;
+
+  sourceRoot = "Jool-${sourceAttrs.version}.zip/usr";
+
+  buildInputs = [ autoreconfHook pkgconfig libnl ];
+
+  meta = with stdenv.lib; {
+    homepage = https://www.jool.mx/;
+    description = "Fairly compliant SIIT and Stateful NAT64 for Linux - CLI tools";
+    platforms = platforms.linux;
+    maintainers = with maintainers; [ fpletz ];
+  };
+}
diff --git a/pkgs/os-specific/linux/jool/default.nix b/pkgs/os-specific/linux/jool/default.nix
new file mode 100644
index 000000000000..fdb2f041a658
--- /dev/null
+++ b/pkgs/os-specific/linux/jool/default.nix
@@ -0,0 +1,30 @@
+{ stdenv, fetchzip, kernel }:
+
+let
+  sourceAttrs = (import ./source.nix) { inherit fetchzip; };
+in
+
+stdenv.mkDerivation {
+  name = "jool-${sourceAttrs.version}-${kernel.version}";
+
+  src = sourceAttrs.src;
+
+  prePatch = ''
+    sed -e 's@/lib/modules/\$(.*)@${kernel.dev}/lib/modules/${kernel.modDirVersion}@' -i mod/*/Makefile
+  '';
+
+  buildPhase = ''
+    make -C mod
+  '';
+
+  installPhase = ''
+    make -C mod modules_install INSTALL_MOD_PATH=$out
+  '';
+
+  meta = with stdenv.lib; {
+    homepage = https://www.jool.mx/;
+    description = "Fairly compliant SIIT and Stateful NAT64 for Linux - kernel modules";
+    platforms = platforms.linux;
+    maintainers = with maintainers; [ fpletz ];
+  };
+}
diff --git a/pkgs/os-specific/linux/jool/source.nix b/pkgs/os-specific/linux/jool/source.nix
new file mode 100644
index 000000000000..196167667e07
--- /dev/null
+++ b/pkgs/os-specific/linux/jool/source.nix
@@ -0,0 +1,9 @@
+{ fetchzip }:
+
+rec {
+  version = "3.3.2";
+  src = fetchzip {
+    url = "https://www.jool.mx/download/Jool-${version}.zip";
+    sha256 = "0hc6vlxzmjrgf7vjcwprdqcbx3biq8kphks5k725mrd9rb84drgw";
+  };
+}
diff --git a/pkgs/os-specific/linux/kernel/linux-3.10.nix b/pkgs/os-specific/linux/kernel/linux-3.10.nix
index 42b90a48097f..3d2b683ee72e 100644
--- a/pkgs/os-specific/linux/kernel/linux-3.10.nix
+++ b/pkgs/os-specific/linux/kernel/linux-3.10.nix
@@ -1,12 +1,12 @@
 { stdenv, fetchurl, ... } @ args:
 
 import ./generic.nix (args // rec {
-  version = "3.10.82";
+  version = "3.10.84";
   extraMeta.branch = "3.10";
 
   src = fetchurl {
     url = "mirror://kernel/linux/kernel/v3.x/linux-${version}.tar.xz";
-    sha256 = "177rzyd9mxvbacy242abk7annhlm48rbdspr78y5qqsqsgihh88y";
+    sha256 = "042cybswcxxzi22h96i4h73a4hcb4drhifs6l9jqlqamdn6xabd3";
   };
 
   features.iwlwifi = true;
diff --git a/pkgs/os-specific/linux/kernel/linux-3.14.nix b/pkgs/os-specific/linux/kernel/linux-3.14.nix
index 103fbcbcfb9c..377f0271aeaa 100644
--- a/pkgs/os-specific/linux/kernel/linux-3.14.nix
+++ b/pkgs/os-specific/linux/kernel/linux-3.14.nix
@@ -1,13 +1,13 @@
 { stdenv, fetchurl, ... } @ args:
 
 import ./generic.nix (args // rec {
-  version = "3.14.46";
+  version = "3.14.48";
   # Remember to update grsecurity!
   extraMeta.branch = "3.14";
 
   src = fetchurl {
     url = "mirror://kernel/linux/kernel/v3.x/linux-${version}.tar.xz";
-    sha256 = "1ran8fi1ldc89x3gpxwkkfl64mln4sl0rq5bbl8imlca5nljmzkb";
+    sha256 = "098a7kjfw4jf0f7h6z57f2719jfz3y3jjlcd8y6d95xvhy7xxyw9";
   };
 
   features.iwlwifi = true;
diff --git a/pkgs/os-specific/linux/kernel/linux-3.18.nix b/pkgs/os-specific/linux/kernel/linux-3.18.nix
index 843172581cc7..b0b4c6ed5bd7 100644
--- a/pkgs/os-specific/linux/kernel/linux-3.18.nix
+++ b/pkgs/os-specific/linux/kernel/linux-3.18.nix
@@ -1,12 +1,12 @@
 { stdenv, fetchurl, ... } @ args:
 
 import ./generic.nix (args // rec {
-  version = "3.18.17";
+  version = "3.18.18";
   extraMeta.branch = "3.18";
 
   src = fetchurl {
     url = "mirror://kernel/linux/kernel/v3.x/linux-${version}.tar.xz";
-    sha256 = "08512kqvy91jh26jld2h3d9xq3wsfbyylzawjgn75x4r5li6y5ha";
+    sha256 = "1fcd4xfnywwb3grdvcnf39njwzb40v10rnzagxqmancsaqy253jv";
   };
 
   features.iwlwifi = true;
diff --git a/pkgs/os-specific/linux/kernel/linux-4.0.nix b/pkgs/os-specific/linux/kernel/linux-4.0.nix
index 3ea4257a1e91..8607bcf70cf3 100644
--- a/pkgs/os-specific/linux/kernel/linux-4.0.nix
+++ b/pkgs/os-specific/linux/kernel/linux-4.0.nix
@@ -1,13 +1,13 @@
 { stdenv, fetchurl, ... } @ args:
 
 import ./generic.nix (args // rec {
-  version = "4.0.7";
+  version = "4.0.8";
   # Remember to update grsecurity!
   extraMeta.branch = "4.0";
 
   src = fetchurl {
     url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz";
-    sha256 = "01c68w6lygzjzllv7xgnd1hm3339rs0fvd8q26n6bdfa95aj554m";
+    sha256 = "1cggqi5kdan818xw5g5wmapcsf501f5m9bympsy6a2cpphknfdmn";
   };
 
   features.iwlwifi = true;
diff --git a/pkgs/os-specific/linux/kernel/linux-4.1.nix b/pkgs/os-specific/linux/kernel/linux-4.1.nix
index 5d9a026f6147..5405ae9956d6 100644
--- a/pkgs/os-specific/linux/kernel/linux-4.1.nix
+++ b/pkgs/os-specific/linux/kernel/linux-4.1.nix
@@ -1,12 +1,12 @@
 { stdenv, fetchurl, ... } @ args:
 
 import ./generic.nix (args // rec {
-  version = "4.1.1";
+  version = "4.1.2";
   extraMeta.branch = "4.1";
 
   src = fetchurl {
     url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz";
-    sha256 = "12bfih081cbqlgmgq1fqdvvpxga5saj4kkvhawsl4fpg4mybrml8";
+    sha256 = "1mdyjhnzhh254cblahqmpsk226z006z6sm9dmwvg6jlhpsw4cjhy";
   };
 
   features.iwlwifi = true;
diff --git a/pkgs/os-specific/linux/kernel/patches.nix b/pkgs/os-specific/linux/kernel/patches.nix
index ed202d77b387..a8fc01665082 100644
--- a/pkgs/os-specific/linux/kernel/patches.nix
+++ b/pkgs/os-specific/linux/kernel/patches.nix
@@ -65,17 +65,17 @@ rec {
   };
 
   grsecurity_stable = grsecPatch
-    { kversion  = "3.14.46";
-      revision  = "201506300711";
+    { kversion  = "3.14.48";
+      revision  = "201507111210";
       branch    = "stable";
-      sha256    = "0xjqh7yc4vzgbnql16aylla9b0cjh442sywp8bvkh0ny5m3rj64l";
+      sha256    = "0phmqlkx6vqlv79ppf6g4wsx7rwsvwpakpkm9xsq8qazffk7s9qk";
     };
 
   grsecurity_unstable = grsecPatch
-    { kversion  = "4.0.7";
-      revision  = "201506300712";
+    { kversion  = "4.0.8";
+      revision  = "201507111211";
       branch    = "test";
-      sha256    = "0rw0wx5nc244m2q7f9y832mmkv8gb8yv1rn1w2pyq8brckiswni7";
+      sha256    = "1p9ym8hbwaan9pgxgn8k4rm3n33wl8ag1fzmyr5f4mxs634wgwgx";
     };
 
   grsec_fix_path =
diff --git a/pkgs/os-specific/linux/powertop/default.nix b/pkgs/os-specific/linux/powertop/default.nix
index befe16f72f21..9e32cd70cfb7 100644
--- a/pkgs/os-specific/linux/powertop/default.nix
+++ b/pkgs/os-specific/linux/powertop/default.nix
@@ -10,6 +10,10 @@ stdenv.mkDerivation rec {
 
   buildInputs = [ gettext libnl ncurses pciutils pkgconfig zlib ];
 
+  patchPhase = ''
+    substituteInPlace src/main.cpp --replace "/sbin/modprobe" "modprobe"
+  '';
+
   meta = {
     description = "Analyze power consumption on Intel-based laptops";
     license = stdenv.lib.licenses.gpl2;
diff --git a/pkgs/servers/consul/Gemfile.lock b/pkgs/servers/consul/Gemfile.lock
index f79b05b481d4..cc4df6b24309 100644
--- a/pkgs/servers/consul/Gemfile.lock
+++ b/pkgs/servers/consul/Gemfile.lock
@@ -3,7 +3,7 @@ GEM
   specs:
     execjs (2.3.0)
     json (1.8.2)
-    libv8 (3.16.14.7)
+    libv8 (3.16.14.11)
     ref (1.0.5)
     sass (3.4.11)
     therubyracer (0.12.1)
diff --git a/pkgs/servers/consul/gemset.nix b/pkgs/servers/consul/gemset.nix
index e813fc9b3878..f87038775be7 100644
--- a/pkgs/servers/consul/gemset.nix
+++ b/pkgs/servers/consul/gemset.nix
@@ -14,10 +14,10 @@
     };
   };
   libv8 = {
-    version = "3.16.14.7";
+    version = "3.16.14.11";
     source = {
       type = "gem";
-      sha256 = "0dv5q5n5nf6b8h3fybwmsr3vkj70w4g1jpf6661j3hsv9vp0g4qq";
+      sha256 = "000vbiy78wk5r1f6p7qncab8ldg7qw5pjz7bchn3lw700gpaacxp";
     };
   };
   ref = {
diff --git a/pkgs/servers/consul/ui.nix b/pkgs/servers/consul/ui.nix
index eb7093ec615d..2aaa7b4a1319 100644
--- a/pkgs/servers/consul/ui.nix
+++ b/pkgs/servers/consul/ui.nix
@@ -1,4 +1,4 @@
-{ stdenv, goPackages, ruby , nodejs, bundlerEnv }:
+{ stdenv, goPackages, ruby, bundlerEnv }:
 
 let
   # `sass` et al
@@ -15,7 +15,7 @@ stdenv.mkDerivation {
 
   src = goPackages.consul.src;
 
-  buildInputs = [ ruby gems nodejs ];
+  buildInputs = [ ruby gems ];
 
   buildPhase = ''
     # Build ui static files
diff --git a/pkgs/servers/dns/bind/default.nix b/pkgs/servers/dns/bind/default.nix
index fbfa2d8d9b7d..92050beae8aa 100644
--- a/pkgs/servers/dns/bind/default.nix
+++ b/pkgs/servers/dns/bind/default.nix
@@ -1,13 +1,13 @@
 { stdenv, fetchurl, openssl, libtool, perl, libxml2 }:
 
-let version = "9.10.2"; in
+let version = "9.10.2-P2"; in
 
 stdenv.mkDerivation rec {
   name = "bind-${version}";
 
   src = fetchurl {
     url = "http://ftp.isc.org/isc/bind9/${version}/${name}.tar.gz";
-    sha256 = "163s8pvqj4lyryvfzkc6acbys7gw1by5dqwilggiwp54ia8bg6vg";
+    sha256 = "0pvcnwd4rzfk3l35ys72p14ly9k857wbn1lxzd4ayjk3i2pz1rmi";
   };
 
   patchPhase = ''
diff --git a/pkgs/servers/dns/nsd/default.nix b/pkgs/servers/dns/nsd/default.nix
index d3f6cc24e3b4..218c7dc73f18 100644
--- a/pkgs/servers/dns/nsd/default.nix
+++ b/pkgs/servers/dns/nsd/default.nix
@@ -13,11 +13,11 @@
 }:
 
 stdenv.mkDerivation rec {
-  name = "nsd-4.1.2";
+  name = "nsd-4.1.3";
 
   src = fetchurl {
     url = "http://www.nlnetlabs.nl/downloads/nsd/${name}.tar.gz";
-    sha256 = "0kb4jcckf4di9c88c09vb8ngbq19yh8njrp16yk2cic8p1dvf545";
+    sha256 = "1r8p5lqj7i6xi4k04jr1n9r1p8gwy3547hzsi8xags6krnav4z09";
   };
 
   buildInputs = [ libevent openssl ];
diff --git a/pkgs/servers/http/nginx/default.nix b/pkgs/servers/http/nginx/default.nix
index 87a4cc398a98..7888a772e2a5 100644
--- a/pkgs/servers/http/nginx/default.nix
+++ b/pkgs/servers/http/nginx/default.nix
@@ -8,6 +8,7 @@
 , ngx_lua ? false
 , set_misc ? false
 , fluent ? false
+, extraModules ? []
 }:
 
 with stdenv.lib;
@@ -57,8 +58,8 @@ let
   lua-ext = fetchFromGitHub {
     owner = "openresty";
     repo = "lua-nginx-module";
-    rev = "v0.9.16rc1";
-    sha256 = "0fdrzfkzdrxykbyxrpas7ns6kxzjf9s6h0fj7k4423wfwybi0kic";
+    rev = "v0.9.16";
+    sha256 = "0dvdam228jhsrayb22ishljdkgib08bakh8ygn84sq0c2xbidzlp";
   };
 
   set-misc-ext = fetchFromGitHub {
@@ -133,7 +134,8 @@ stdenv.mkDerivation rec {
     ++ optional set_misc "--add-module=${set-misc-ext}"
     ++ optionals (elem stdenv.system (with platforms; linux ++ freebsd)) 
         [ "--with-file-aio" "--with-aio_module" ]
-    ++ optional fluent "--add-module=${fluentd}";
+    ++ optional fluent "--add-module=${fluentd}"
+    ++ (map (m: "--add-module=${m}") extraModules);
 
 
   additionalFlags = optionalString stdenv.isDarwin "-Wno-error=deprecated-declarations -Wno-error=conditional-uninitialized";
diff --git a/pkgs/servers/mail/postfix/2.11.nix b/pkgs/servers/mail/postfix/2.11.nix
index 817f559cbd52..bfd10fb591b2 100644
--- a/pkgs/servers/mail/postfix/2.11.nix
+++ b/pkgs/servers/mail/postfix/2.11.nix
@@ -6,11 +6,11 @@ stdenv.mkDerivation rec {
 
   name = "postfix-${version}";
 
-  version = "2.11.4";
+  version = "2.11.5";
 
   src = fetchurl {
     url = "ftp://ftp.cs.uu.nl/mirror/postfix/postfix-release/official/${name}.tar.gz";
-    sha256 = "07h3rdfgs449hb49rxcx4iapib0l0zchnhscgn4h00wcnlflq5gl";
+    sha256 = "11riz8ggaa09pi8d6xv2807qp7yjn918mrylfvkfwmvcdlgwck0a";
   };
 
   patches = [ ./postfix-2.11.0.patch ];
diff --git a/pkgs/servers/misc/subsonic/default.nix b/pkgs/servers/misc/subsonic/default.nix
index dad32139cbee..4e7ed6712da9 100644
--- a/pkgs/servers/misc/subsonic/default.nix
+++ b/pkgs/servers/misc/subsonic/default.nix
@@ -28,6 +28,7 @@ stdenv.mkDerivation rec {
     homepage = http://subsonic.org;
     description = "Personal media streamer";
     license = stdenv.lib.licenses.gpl3;
+    maintainers = with stdenv.lib.maintainers; [ telotortium ];
   };
 
   phases = ["unpackPhase" "installPhase"];
diff --git a/pkgs/servers/nosql/redis/3.0.nix b/pkgs/servers/nosql/redis/3.0.nix
deleted file mode 100644
index ae5a98d5f0ae..000000000000
--- a/pkgs/servers/nosql/redis/3.0.nix
+++ /dev/null
@@ -1,23 +0,0 @@
-{ stdenv, fetchurl }:
-
-stdenv.mkDerivation rec {
-  version = "3.0.2";
-  name = "redis-${version}";
-
-  src = fetchurl {
-    url = "https://github.com/antirez/redis/archive/${version}.tar.gz";
-    sha256 = "00gazq98ccz64l4l5vzpynyk5wg15iwmwwvznaarkwm99b9rsz4g";
-  };
-
-  makeFlags = "PREFIX=$(out)";
-
-  enableParallelBuilding = true;
-
-  meta = with stdenv.lib; {
-    homepage = http://redis.io;
-    description = "An open source, advanced key-value store";
-    license = stdenv.lib.licenses.bsd3;
-    platforms = platforms.unix;
-    maintainers = [ maintainers.berdario ];
-  };
-}
diff --git a/pkgs/servers/nosql/redis/default.nix b/pkgs/servers/nosql/redis/default.nix
index 833a17246fc9..6da7ec11e7c6 100644
--- a/pkgs/servers/nosql/redis/default.nix
+++ b/pkgs/servers/nosql/redis/default.nix
@@ -1,11 +1,12 @@
 { stdenv, fetchurl }:
 
 stdenv.mkDerivation rec {
-  name = "redis-2.8.19";
+  version = "3.0.2";
+  name = "redis-${version}";
 
   src = fetchurl {
     url = "http://download.redis.io/releases/${name}.tar.gz";
-    sha256 = "29bb08abfc3d392b2f0c3e7f48ec46dd09ab1023f9a5575fc2a93546f4ca5145";
+    sha256 = "93e422c0d584623601f89b956045be158889ebe594478a2c24e1bf218495633f";
   };
 
   makeFlags = "PREFIX=$(out)";
diff --git a/pkgs/shells/fish/default.nix b/pkgs/shells/fish/default.nix
index 119a3593cec8..2460c511850f 100644
--- a/pkgs/shells/fish/default.nix
+++ b/pkgs/shells/fish/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "fish-${version}";
-  version = "2.1.2";
+  version = "2.2.0";
 
   src = fetchurl {
     url = "http://fishshell.com/files/${version}/${name}.tar.gz";
-    sha256 = "1pgnz5lapm4qk48a13k9698jaswybzlbz2nyc621d852ldf0vhn6";
+    sha256 = "0ympqz7llmf0hafxwglykplw6j5cz82yhlrw50lw4bnf2kykjqx7";
   };
 
   buildInputs = [ ncurses libiconv ];
diff --git a/pkgs/shells/xonsh/default.nix b/pkgs/shells/xonsh/default.nix
index 3849c96ec131..6b33f5833d86 100644
--- a/pkgs/shells/xonsh/default.nix
+++ b/pkgs/shells/xonsh/default.nix
@@ -1,4 +1,4 @@
-{stdenv, fetchurl, python3Packages}:
+{stdenv, fetchFromGitHub, python3Packages}:
 
 python3Packages.buildPythonPackage rec {
   name = "xonsh-${version}";
@@ -16,9 +16,11 @@ python3Packages.buildPythonPackage rec {
 
   propagatedBuildInputs = [ python3Packages.ply ];
 
-  src = fetchurl {
-    url = "https://github.com/scopatz/xonsh/archive/${version}.zip";
-    sha256 = "0p2d7p892w77ii8yy51vpw7jlz2y53k8g61m7l8bar3hr3qrl306";
+  src = fetchFromGitHub {
+    owner = "scopatz";
+    repo = "xonsh";
+    rev = version;
+    sha256 = "04qnjqpz5y38g22irpph13j2a4hy7mk9pqvqz1mfimaf8zgmyh1n";
   };
 
   meta = with stdenv.lib; {
diff --git a/pkgs/tools/admin/nxproxy/0660_nxcomp_fix-negotiation-in-stage-10-error.full+lite.patch b/pkgs/tools/admin/nxproxy/0660_nxcomp_fix-negotiation-in-stage-10-error.full+lite.patch
deleted file mode 100644
index 3d4c584fb078..000000000000
--- a/pkgs/tools/admin/nxproxy/0660_nxcomp_fix-negotiation-in-stage-10-error.full+lite.patch
+++ /dev/null
@@ -1,67 +0,0 @@
-commit f982cbc85e9ffff24a6a348c3637b54a7e8cbc34
-Author: Vadim Troshchinskiy <vtroshchinskiy@qindel.com>
-Date:   Wed May 20 15:47:45 2015 +0200
-
-Fix negotiation in stage 10 error
-
-Problem fixed by adding a select() call to implement a timeout,
-and retrying writes if needed.
-
-v2: backport to nx-libs 3.5.0.x (Mihai Moldovan)
-
---- a/nxcomp/Loop.cpp
-+++ b/nxcomp/Loop.cpp
-@@ -8073,16 +8073,52 @@ int ReadRemoteData(int fd, char *buffer,
- int WriteLocalData(int fd, const char *buffer, int size)
- {
-   int position = 0;
-+  int ret = 0;
-+  fd_set writeSet;
-+  struct timeval selectTs = {30, 0};
- 
-   while (position < size)
-   {
-+
-+    // A write to a non-blocking socket may fail with EAGAIN. The problem is
-+    // that cache data is done in several writes, and there's no easy way
-+    // to handle failure without rewriting a significant amount of code.
-+    //
-+    // Bailing out of the outer loop would result in restarting the sending
-+    // of the entire cache list, which would confuse the other side.
-+
-+    FD_ZERO(&writeSet);
-+    FD_SET(fd, &writeSet);
-+
-+    ret = select(fd+1, NULL, &writeSet, NULL, &selectTs);
-+
-+    #ifdef DEBUG
-+    *logofs << "Loop: WriteLocalData: select() returned with a code of " << ret << " and remaining timeout of "
-+            << selectTs.tv_sec << " sec, " << selectTs.tv_usec << "usec\n" << logofs_flush;
-+    #endif
-+
-+    if ( ret < 0 )
-+    {
-+      *logofs << "Loop: Error in select() when writing data to FD#" << fd << ": " << strerror(EGET()) << "\n" << logofs_flush;
-+
-+      if ( EGET() == EINTR )
-+        continue;
-+
-+      return -1;
-+    }
-+    else if ( ret == 0 )
-+    {
-+      *logofs << "Loop: Timeout expired in select() when writing data to FD#" << fd << ": " << strerror(EGET()) << "\n" << logofs_flush;
-+      return -1;
-+    }
-+
-     int result = write(fd, buffer + position, size - position);
- 
-     getNewTimestamp();
- 
-     if (result <= 0)
-     {
--      if (result < 0 && EGET() == EINTR)
-+      if (result < 0 && (EGET() == EINTR || EGET() == EAGAIN || EGET() == EWOULDBLOCK))
-       {
-         continue;
-       }
diff --git a/pkgs/tools/admin/nxproxy/default.nix b/pkgs/tools/admin/nxproxy/default.nix
index 20b8f4059ad8..ebcd2afd46f6 100644
--- a/pkgs/tools/admin/nxproxy/default.nix
+++ b/pkgs/tools/admin/nxproxy/default.nix
@@ -1,15 +1,16 @@
 { stdenv, fetchurl, autoreconfHook, libxcomp }:
 
-let version = "3.5.0.31"; in
+let version = "3.5.0.32"; in
 stdenv.mkDerivation {
   name = "nxproxy-${version}";
 
   src = fetchurl {
-    sha256 = "1hi3xrjzr37zs72djw3k7gj6mn2bsihfw1iysl8l0i85jl6sdfkd";
+    sha256 = "02n5bdc1jsq999agb4w6dmdj5l2wlln2lka84qz6rpswwc59zaxm";
     url = "http://code.x2go.org/releases/source/nx-libs/nx-libs-${version}-lite.tar.gz";
   };
 
   meta = with stdenv.lib; {
+    inherit version;
     description = "NX compression proxy";
     homepage = "http://wiki.x2go.org/doku.php/wiki:libs:nx-libs";
     license = licenses.gpl2;
@@ -17,10 +18,6 @@ stdenv.mkDerivation {
     maintainers = with maintainers; [ nckx ];
   };
 
-  patches = [
-    ./0660_nxcomp_fix-negotiation-in-stage-10-error.full+lite.patch
-  ];
-
   buildInputs = [ libxcomp ];
   nativeBuildInputs = [ autoreconfHook ];
 
diff --git a/pkgs/tools/filesystems/btrfsprogs/default.nix b/pkgs/tools/filesystems/btrfsprogs/default.nix
index 7b29e0a783be..95b34ed8960c 100644
--- a/pkgs/tools/filesystems/btrfsprogs/default.nix
+++ b/pkgs/tools/filesystems/btrfsprogs/default.nix
@@ -1,14 +1,15 @@
 { stdenv, fetchurl, pkgconfig, attr, acl, zlib, libuuid, e2fsprogs, lzo
-, asciidoc, xmlto, docbook_xml_dtd_45, docbook_xsl, libxslt }:
+, asciidoc, xmlto, docbook_xml_dtd_45, docbook_xsl, libxslt
+}:
 
-let version = "4.1"; in
+let version = "4.1.1"; in
 
-stdenv.mkDerivation (rec {
+stdenv.mkDerivation rec {
   name = "btrfs-progs-${version}";
 
   src = fetchurl {
     url = "mirror://kernel/linux/kernel/people/kdave/btrfs-progs/btrfs-progs-v${version}.tar.xz";
-    sha256 = "1s5pzvi30mivxgbkx7nbqn38pfiw20rdnd6xiqsyfj7rpffzzimb";
+    sha256 = "1d01f2i5fnnhkp184kfv8b9l37v1dmvqwqr22k71x6k2ss7nkwmp";
   };
 
   buildInputs = [
@@ -16,10 +17,9 @@ stdenv.mkDerivation (rec {
     asciidoc xmlto docbook_xml_dtd_45 docbook_xsl libxslt
   ];
 
-  # for btrfs to get the rpath to libgcc_s, needed for pthread_cancel to work
-  NIX_CFLAGS_LINK = "-lgcc_s";
-
-  makeFlags = "prefix=$(out)";
+  # gcc bug with -O1 on ARM with gcc 4.8
+  # This should be fine on all platforms so apply universally
+  patchPhase = "sed -i s/-O1/-O2/ configure";
 
   meta = with stdenv.lib; {
     description = "Utilities for the btrfs filesystem";
@@ -28,7 +28,4 @@ stdenv.mkDerivation (rec {
     maintainers = with maintainers; [ raskin wkennington ];
     platforms = platforms.linux;
   };
-} // (if stdenv.isArm then {
-  # gcc bug with -O1 on ARM
-  patchPhase = "sed -i s/-O1/-O2/ configure";
-} else {}))
+}
diff --git a/pkgs/tools/misc/debbindiff/default.nix b/pkgs/tools/misc/debbindiff/default.nix
new file mode 100644
index 000000000000..f5fcb37324ee
--- /dev/null
+++ b/pkgs/tools/misc/debbindiff/default.nix
@@ -0,0 +1,46 @@
+{ stdenv, fetchgit, pythonPackages, docutils
+, acl, binutils, bzip2, cdrkit, cpio, diffutils, e2fsprogs, file, gettext
+, gnupg, gzip, pdftk, poppler_utils, rpm, squashfsTools, unzip, vim, xz
+}:
+
+pythonPackages.buildPythonPackage rec {
+  name = "debbindiff-${version}";
+  version = "26";
+
+  namePrefix = "";
+
+  src = fetchgit {
+    url = "git://anonscm.debian.org/reproducible/debbindiff.git";
+    rev = "refs/tags/${version}";
+    sha256 = "18637gc7c92mwcpx3dvh6xild0sb9bwsgfcrjplmh7s8frvlvkv6";
+  };
+
+  postPatch = ''
+    # Different pkg name in debian
+    sed -i setup.py -e "s@'magic'@'Magic-file-extensions'@"
+
+    # Upstream doesn't provide a PKG-INFO file
+    sed -i setup.py -e "/'rpm',/d"
+  '';
+
+  # Still missing these tools: ghc javap showttf sng
+  propagatedBuildInputs = (with pythonPackages; [ debian magic ]) ++
+    [ acl binutils bzip2 cdrkit cpio diffutils e2fsprogs file gettext gnupg
+      gzip pdftk poppler_utils rpm squashfsTools unzip vim xz ];
+
+  doCheck = false; # Calls 'mknod' in squashfs tests, which needs root
+
+  postInstall = ''
+    mv $out/bin/debbindiff.py $out/bin/debbindiff
+    mkdir -p $out/share/man/man1
+    ${docutils}/bin/rst2man.py debian/debbindiff.1.rst $out/share/man/man1/debbindiff.1
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Highlight differences between two builds of Debian packages, and even other kind of files";
+    homepage = https://wiki.debian.org/ReproducibleBuilds;
+    license = licenses.gpl3Plus;
+    maintainers = [ maintainers.dezgeg ];
+    platforms = platforms.linux;
+  };
+}
diff --git a/pkgs/tools/misc/file/python.patch b/pkgs/tools/misc/file/python.patch
deleted file mode 100644
index 8ecbc9a81fdc..000000000000
--- a/pkgs/tools/misc/file/python.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- file-5.11/python/magic.py	2011-09-22 18:57:41.000000000 +0200
-+++ file-5.11/python/magic.py.1	2012-04-30 15:00:31.750213810 +0200
-@@ -13,7 +13,7 @@
-     Loads the shared library through ctypes and returns a library
-     L{ctypes.CDLL} instance 
-     """
--    return ctypes.cdll.LoadLibrary(find_library('magic'))
-+    return ctypes.CDLL('libmagic.so')
- 
- _libraries = {}
- _libraries['magic'] = _init()
diff --git a/pkgs/tools/misc/grub/2.0x.nix b/pkgs/tools/misc/grub/2.0x.nix
index e33290e9852a..f8f0f0880792 100644
--- a/pkgs/tools/misc/grub/2.0x.nix
+++ b/pkgs/tools/misc/grub/2.0x.nix
@@ -20,7 +20,7 @@ let
   canEfi = any (system: stdenv.system == system) (mapAttrsToList (name: _: name) efiSystems);
   inPCSystems = any (system: stdenv.system == system) (mapAttrsToList (name: _: name) pcSystems);
 
-  version = "2.02-git-2015-05-14";
+  version = "2.x-2015-07-05";
 
   unifont_bdf = fetchurl {
     url = "http://unifoundry.com/unifont-5.1.20080820.bdf.gz";
@@ -43,8 +43,8 @@ stdenv.mkDerivation rec {
 
   src = fetchFromSavannah {
     repo = "grub";
-    rev = "5370dcfdae66b60cff3507ad925300a679fe4117";
-    sha256 = "1v4a3shcgfxjifwddmn3d0lyg3db1d3k87x5nchy7cyiss55jx1s";
+    rev = "0d7c7f751dc5a8338497bef8b38f78153c4f0464";
+    sha256 = "1vkd7na3kp9ri4xsd3zznvnrjzz1qsz62fycg941pm2k18r3m7xd";
   };
 
   nativeBuildInputs = [ autogen flex bison python autoconf automake ];
diff --git a/pkgs/tools/networking/dnscrypt-proxy/default.nix b/pkgs/tools/networking/dnscrypt-proxy/default.nix
index e975cb1e7382..206f7f2daace 100644
--- a/pkgs/tools/networking/dnscrypt-proxy/default.nix
+++ b/pkgs/tools/networking/dnscrypt-proxy/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, libsodium }:
+{ stdenv, fetchurl, libsodium, pkgconfig, systemd }:
 
 stdenv.mkDerivation rec {
   name = "dnscrypt-proxy-${version}";
@@ -9,7 +9,11 @@ stdenv.mkDerivation rec {
     sha256 = "1cp3ivxngrihil6i7b659d39v9v6iwjs16s2kj9wz1anzyx0j6nx";
   };
 
-  buildInputs = [ libsodium ];
+  configureFlags = ''
+    ${stdenv.lib.optionalString stdenv.isLinux "--with-systemd"}
+  '';
+
+  buildInputs = [ pkgconfig libsodium ] ++ stdenv.lib.optional stdenv.isLinux systemd;
 
   meta = {
     description = "A tool for securing communications between a client and a DNS resolver";
diff --git a/pkgs/tools/networking/haproxy/default.nix b/pkgs/tools/networking/haproxy/default.nix
index 4119afa5228a..de8488ab3a8e 100644
--- a/pkgs/tools/networking/haproxy/default.nix
+++ b/pkgs/tools/networking/haproxy/default.nix
@@ -2,12 +2,12 @@
 
 stdenv.mkDerivation rec {
   majorVersion = "1.5";
-  version = "${majorVersion}.11";
+  version = "${majorVersion}.14";
   name = "haproxy-${version}";
 
   src = fetchurl {
     url = "http://haproxy.1wt.eu/download/${majorVersion}/src/${name}.tar.gz";
-    sha256 = "1gwkyy06c8bw5vcjv82hai554zrd415jjsb1iafg01c4k1ia8nlb";
+    sha256 = "16cg1jmy2d8mq2ypwifsvhbyp4pyrj0zm0r818sx0r4hchwdsrcm";
   };
 
   buildInputs = [ openssl ];
diff --git a/pkgs/tools/networking/httping/default.nix b/pkgs/tools/networking/httping/default.nix
index 9389d17900b1..a0ec6a5513cb 100644
--- a/pkgs/tools/networking/httping/default.nix
+++ b/pkgs/tools/networking/httping/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, gettext, ncurses }:
+{ stdenv, fetchurl, gettext, ncurses, openssl }:
 
 stdenv.mkDerivation rec {
   name = "httping-${version}";
@@ -10,7 +10,7 @@ stdenv.mkDerivation rec {
     sha256 = "1110r3gpsj9xmybdw7w4zkhj3zmn5mnv2nq0ijbvrywbn019zdfs";
   };
 
-  buildInputs = [ ncurses ];
+  buildInputs = [ ncurses openssl ];
   nativeBuildInputs = [ gettext ];
 
   makeFlags = [
diff --git a/pkgs/tools/security/crackxls/default.nix b/pkgs/tools/security/crackxls/default.nix
index f4c92ac701f4..c8ea45a39dbe 100644
--- a/pkgs/tools/security/crackxls/default.nix
+++ b/pkgs/tools/security/crackxls/default.nix
@@ -13,6 +13,12 @@ stdenv.mkDerivation rec {
 
   buildInputs = [ pkgconfig autoconf automake openssl libgsf gmp ];
 
+  patchPhase = ''
+    substituteInPlace Makefile.in \
+      --replace '-march=native' "" \
+      --replace '-mtune=native' ""
+  '';
+
   installPhase =
   ''
     mkdir -p $out/bin
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 3d4910ff30d8..dff899dd7d1a 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -743,7 +743,9 @@ let
 
   bitbucket-cli = pythonPackages.bitbucket-cli;
 
-  blink = callPackage ../applications/networking/instant-messengers/blink { };
+  blink = callPackage ../applications/networking/instant-messengers/blink {
+    gnutls = gnutls33;
+  };
 
   blitz = callPackage ../development/libraries/blitz { };
 
@@ -1187,12 +1189,10 @@ let
 
   cudatoolkit65 = import ../development/compilers/cudatoolkit/6.5.nix {
     inherit callPackage;
-    python = python26;
   };
 
   cudatoolkit7 = import ../development/compilers/cudatoolkit/7.0.nix {
     inherit callPackage;
-    python = python26;
   };
 
   cudatoolkit = cudatoolkit5;
@@ -1241,6 +1241,8 @@ let
 
   dcfldd = callPackage ../tools/system/dcfldd { };
 
+  debbindiff = callPackage ../tools/misc/debbindiff { };
+
   debian_devscripts = callPackage ../tools/misc/debian-devscripts {
     inherit (perlPackages) CryptSSLeay LWP TimeDate DBFile FileDesktopEntry;
   };
@@ -2003,9 +2005,7 @@ let
   ninka = callPackage ../development/tools/misc/ninka { };
 
   nodejs-0_12 = callPackage ../development/web/nodejs {
-    libuv = if stdenv.isDarwin
-      then libuvVersions.v1_6_1
-      else libuvVersions.v1_2_0;
+    libuv = libuvVersions.v1_6_1;
     libtool = darwin.cctools;
   };
   nodejs-unstable = callPackage ../development/web/nodejs { libuv = libuvVersions.v1_2_0; unstableVersion = true; };
@@ -4625,7 +4625,7 @@ let
   };
 
   rustcMaster = callPackage ../development/compilers/rustc/head.nix {};
-  rustc = callPackage ../development/compilers/rustc/1.0.0.nix {};
+  rustc = callPackage ../development/compilers/rustc {};
 
   rustPlatform = rustStable;
 
@@ -4633,7 +4633,7 @@ let
   rustUnstable = recurseIntoAttrs (makeRustPlatform rustcMaster cargo rustUnstable);
 
   # rust platform to build cargo itself (with cargoSnapshot)
-  rustCargoPlatform = makeRustPlatform rustcMaster cargoSnapshot rustCargoPlatform;
+  rustCargoPlatform = makeRustPlatform rustc cargoSnapshot.cargo rustCargoPlatform;
 
   makeRustPlatform = rustc: cargo: self:
     let
@@ -5276,7 +5276,9 @@ let
     rustPlatform = rustCargoPlatform;
   };
 
-  cargoSnapshot = callPackage ../development/tools/build-managers/cargo/snapshot.nix { };
+  cargoSnapshot = {
+    cargo = callPackage ../development/tools/build-managers/cargo/snapshot.nix { };
+  };
 
   casperjs = callPackage ../development/tools/casperjs { };
 
@@ -5690,6 +5692,8 @@ let
     flex = flex_2_5_35;
   };
 
+  sqlitebrowser = callPackage ../development/tools/database/sqlitebrowser { };
+
   sselp = callPackage ../tools/X11/sselp{ };
 
   stm32flash = callPackage ../development/tools/misc/stm32flash { };
@@ -6206,6 +6210,8 @@ let
 
   gdal = callPackage ../development/libraries/gdal { };
 
+  gdal_1_11_2 = callPackage ../development/libraries/gdal/gdal-1_11_2.nix { };
+
   gdcm = callPackage ../development/libraries/gdcm { };
 
   ggz_base_libs = callPackage ../development/libraries/ggz_base_libs {};
@@ -7985,6 +7991,10 @@ let
 
   sfsexp = callPackage ../development/libraries/sfsexp {};
 
+  shhmsg = callPackage ../development/libraries/shhmsg { };
+
+  shhopt = callPackage ../development/libraries/shhopt { };
+
   silgraphite = callPackage ../development/libraries/silgraphite {};
   graphite2 = callPackage ../development/libraries/silgraphite/graphite2.nix {};
 
@@ -9007,6 +9017,8 @@ let
 
   oracleXE = callPackage ../servers/sql/oracle-xe { };
 
+  qboot = callPackage ../applications/virtualization/qboot { stdenv = stdenv_32bit; };
+
   OVMF = callPackage ../applications/virtualization/OVMF { seabios=false; openssl=null; };
   OVMF-CSM = callPackage ../applications/virtualization/OVMF { openssl=null; };
   #WIP: OVMF-secureBoot = callPackage ../applications/virtualization/OVMF { seabios=false; secureBoot=true; };
@@ -9076,7 +9088,6 @@ let
   radius = callPackage ../servers/radius { };
 
   redis = callPackage ../servers/nosql/redis { };
-  redis3 = callPackage ../servers/nosql/redis/3.0.nix { };
 
   redstore = callPackage ../servers/http/redstore { };
 
@@ -9504,6 +9515,8 @@ let
 
   jfbview = callPackage ../os-specific/linux/jfbview { };
 
+  jool-cli = callPackage ../os-specific/linux/jool/cli.nix { };
+
   jujuutils = callPackage ../os-specific/linux/jujuutils { };
 
   kbd = callPackage ../os-specific/linux/kbd { };
@@ -9746,6 +9759,7 @@ let
 
     klibcShrunk = lowPrio (callPackage ../os-specific/linux/klibc/shrunk.nix { });
 
+    jool = callPackage ../os-specific/linux/jool { };
 
     /* compiles but has to be integrated into the kernel somehow
        Let's have it uncommented and finish it..
@@ -10370,6 +10384,8 @@ let
 
   fira = callPackage ../data/fonts/fira { };
 
+  fira-code = callPackage ../data/fonts/fira-code { };
+
   fira-mono = callPackage ../data/fonts/fira-mono { };
 
   font-awesome-ttf = callPackage ../data/fonts/font-awesome-ttf { };
@@ -10703,6 +10719,8 @@ let
 
   bitmeter = callPackage ../applications/audio/bitmeter { };
 
+  bleachbit = callPackage ../applications/misc/bleachbit { };
+
   blender = callPackage  ../applications/misc/blender {
     python = python34;
   };
@@ -13328,6 +13346,8 @@ let
     qt = qt4;
   };
 
+  pahole = callPackage ../development/tools/misc/pahole {};
+
   yed = callPackage ../applications/graphics/yed {};
 
   ykpers = callPackage ../applications/misc/ykpers {};
@@ -13610,6 +13630,8 @@ let
   # get binaries without data built by Hydra
   simutrans_binaries = lowPrio simutrans.binaries;
 
+  snake4 = callPackage ../games/snake4 { };
+
   soi = callPackage ../games/soi {};
 
   # You still can override by passing more arguments.
@@ -14008,10 +14030,7 @@ let
   };
 
   redshift = callPackage ../applications/misc/redshift {
-    inherit (xorg) libX11 libXrandr libxcb randrproto libXxf86vm
-      xf86vidmodeproto;
-    inherit (gnome) GConf;
-    inherit (pythonPackages) pyxdg;
+    inherit (python3Packages) python pygobject3 pyxdg;
     geoclue = geoclue2;
   };
 
diff --git a/pkgs/top-level/emacs-packages.nix b/pkgs/top-level/emacs-packages.nix
index c8b1b0bd7c8a..ef2b505eaa5e 100644
--- a/pkgs/top-level/emacs-packages.nix
+++ b/pkgs/top-level/emacs-packages.nix
@@ -839,6 +839,18 @@ let self = _self // overrides;
     meta = { license = gpl3Plus; };
   };
 
+  moe-theme = melpaBuild rec {
+    pname   = "moe-theme";
+    version = "1.0";
+    src = fetchFromGitHub {
+      owner  = "kuanyui";
+      repo   = "${pname}.el";
+      rev    = "39384a7a9e6886f3a3d79efac4009fcd800a4a14";
+      sha256 = "0i7m15x9sij5wh0gwbijsis8a4jm8izywj7xprk21644ndskvfiz";
+    };
+    meta = { license = gpl3Plus; };
+  };
+
   monokai-theme = melpaBuild rec {
     pname   = "monokai-theme";
     version = "1.0.0";
diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 8d4f0a624f66..726c8e4d05d0 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -484,6 +484,10 @@ let self = _self // overrides; _self = with self; {
       sha256 = "1jnihz3029x51a455nxa0jx2z125x38q3vkkggsgdlrvawzxsm00";
     };
     propagatedBuildInputs = [ ModuleBuildWithXSpp ExtUtilsTypemapsDefault ];
+    patches = [
+      # Fix out of memory error on Perl 5.19.4 and later.
+      ../development/perl-modules/boost-geometry-utils-fix-oom.patch
+    ];
   };
 
   BusinessISBN = buildPerlPackage {
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 3bc7c184e469..ad4b71760229 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -1117,6 +1117,17 @@ let
     };
   };
 
+  debian = buildPythonPackage rec {
+    name = "${pname}-${version}";
+    pname = "python-debian";
+    version = "0.1.23";
+    src = pkgs.fetchurl {
+      url = "https://pypi.python.org/packages/source/p/${pname}/${name}.tar.gz";
+      sha256 = "193faznwnjc3n5991wyzim6h9gyq1zxifmfrnpm3avgkh7ahyynh";
+    };
+    propagatedBuildInputs = with self; [ chardet six ];
+  };
+
   defusedxml = buildPythonPackage rec {
     name = "${pname}-${version}";
     pname = "defusedxml";
@@ -1710,7 +1721,7 @@ let
     };
   };
 
-  cassandraDriver = buildPythonPackage rec {
+  cassandra-driver = buildPythonPackage rec {
     name = "cassandra-driver-2.6.0c2";
 
     src = pkgs.fetchurl {
@@ -1949,19 +1960,16 @@ let
 
 
   colorama = buildPythonPackage rec {
-    name = "colorama-0.2.5";
+    name = "colorama-${version}";
+    version = "0.3.3";
 
     src = pkgs.fetchurl {
-      url = "https://pypi.python.org/packages/source/c/colorama/colorama-0.2.5.tar.gz";
-      md5 = "308c6e38917bdbfc4d3b0783c614897d";
+      url = "https://pypi.python.org/packages/source/c/colorama/${name}.tar.gz";
+      sha256 = "eb21f2ba718fbf357afdfdf6f641ab393901c7ca8d9f37edd0bee4806ffa269c";
     };
 
-    propagatedBuildInputs = with self; [ self.clientform ];
-
-    doCheck = false;
-
     meta = {
-      homepage = http://code.google.com/p/colorama/;
+      homepage = https://github.com/tartley/colorama;
       license = "bsd";
       description = "Cross-platform colored terminal text";
     };
@@ -2187,11 +2195,12 @@ let
   };
 
   cython = buildPythonPackage rec {
-    name = "Cython-0.20.1";
+    name = "Cython-${version}";
+    version = "0.22.1";
 
     src = pkgs.fetchurl {
       url = "http://www.cython.org/release/${name}.tar.gz";
-      sha256 = "0v3nc9z5ynnnjdgcgkyy5g9wazmkjv53nnpjal1v3mr199s6799i";
+      sha256 = "7fff120e65e7b66edb4a42823f5642bad3bc1e5601bf882d66aee50248cf0682";
     };
 
     setupPyBuildFlags = ["--build-base=$out"];
@@ -2199,24 +2208,26 @@ let
     buildInputs = with self; [ pkgs.pkgconfig ];
 
     meta = {
-      description = "An interpreter to help writing C extensions for Python 2";
+      description = "An optimising static compiler for both the Python programming language and the extended Cython programming language";
       platforms = platforms.all;
+      homepage = http://cython.org;
+      license = licenses.asl20;
     };
   };
-  
+
   cytoolz = buildPythonPackage rec {
     name = "cytoolz-${version}";
     version = "0.7.3";
-    
+
     src = pkgs.fetchurl{
       url = "https://pypi.python.org/packages/source/c/cytoolz/cytoolz-${version}.tar.gz";
       md5 = "e9f0441d9f340a23c60357f68f25d163";
     };
-    
+
     meta = {
       homepage = "http://github.com/pytoolz/cytoolz/";
       description = "Cython implementation of Toolz: High performance functional utilities";
-      license = "licenses.bsd3";   
+      license = "licenses.bsd3";
     };
   };
 
@@ -2452,6 +2463,24 @@ let
     };
   };
 
+  pytestpep257 = buildPythonPackage rec {
+     name = "pytest-pep257-${version}";
+     version = "0.0.1";
+
+     src = pkgs.fetchurl {
+       url = "https://pypi.python.org/packages/source/p/pytest-pep257/${name}.tar.gz";
+       sha256 = "003vdkxpx37n0kjqpwgj3314hwk2jfz3nz58db7xh68bf8xy75lk";
+     };
+
+     propagatedBuildInputs = with self ; [ pytest pep257 ];
+
+     meta = {
+       homepage = https://github.com/anderslime/pytest-pep257;
+       description = "py.test plugin for PEP257";
+       license = licenses.mit;
+     };
+  };
+
   pytestquickcheck = buildPythonPackage rec {
     name = "pytest-quickcheck-0.8.2";
 
@@ -2565,6 +2594,23 @@ let
     };
   });
 
+  datashape = buildPythonPackage rec {
+    name = "datashape-${version}";
+    version = "0.4.6";
+
+    src = pkgs.fetchurl {
+      url = "https://pypi.python.org/packages/source/D/DataShape/${name}.tar.gz";
+      sha256 = "0caa86a4347f1b0c45f3890d78d0b89662189c7dd6df3a8e5ff3532ae8bc434f";
+    };
+
+    propagatedBuildInputs = with self; [ numpy multipledispatch dateutil ];
+
+    meta = {
+      homepage = https://github.com/ContinuumIO/datashape;
+      description = "A data description language";
+      license = licenses.bsd2;
+    };
+  };
 
   dateutil = buildPythonPackage (rec {
     name = "dateutil-2.2";
@@ -2647,19 +2693,21 @@ let
   };
 
   decorator = buildPythonPackage rec {
-    name = "decorator-3.4.0";
+    name = "decorator-${version}";
+    version = "3.4.2";
 
     src = pkgs.fetchurl {
       url = "http://pypi.python.org/packages/source/d/decorator/${name}.tar.gz";
-      md5 = "1e8756f719d746e2fc0dd28b41251356";
+      sha256 = "7320002ce61dea6aa24adc945d9d7831b3669553158905cdd12f5d0027b54b44";
     };
 
     meta = {
       homepage = http://pypi.python.org/pypi/decorator;
+      description = "Better living through Python with decorators";
+      license = licenses.mit;
     };
   };
 
-
   deform = buildPythonPackage rec {
     name = "deform-2.0a2";
 
@@ -3319,6 +3367,47 @@ let
     propagatedBuildInputs = with self; [ gflags iso8601 ipaddr httplib2 google_apputils google_api_python_client ];
   };
 
+  gmpy = buildPythonPackage rec {
+    name = "gmpy-1.17";
+
+    src = pkgs.fetchurl {
+      url = "https://pypi.python.org/packages/source/g/gmpy/${name}.zip";
+      md5 = "2bf419076b06e107167e219f60ac6d27";
+    };
+
+    buildInputs = [
+      pkgs.gcc
+      pkgs.gmp
+    ];
+
+    meta = {
+      description = "GMP or MPIR interface to Python 2.4+ and 3.x";
+      homepage = http://code.google.com/p/gmpy/;
+    };
+  };
+
+  gmpy2 = buildPythonPackage rec {
+    name = "gmpy2-2.0.6";
+
+    src = pkgs.fetchurl {
+      url = "https://pypi.python.org/packages/source/g/gmpy2/${name}.zip";
+      md5 = "7365d880953ba54c2cdcf171c7e19b2b";
+    };
+
+    buildInputs = [
+      pkgs.gcc
+      pkgs.gmp
+      pkgs.mpfr
+      pkgs.libmpc
+    ];
+
+    meta = {
+      description = "GMP/MPIR, MPFR, and MPC interface to Python 2.6+ and 3.x";
+      homepage = http://code.google.com/p/gmpy/;
+      license = licenses.gpl3Plus;
+    };
+  };
+
   gmusicapi = with pkgs; pythonPackages.buildPythonPackage rec {
     name = "gmusicapi-4.0.0";
 
@@ -6228,12 +6317,12 @@ let
 
   hetzner = buildPythonPackage rec {
     name = "hetzner-${version}";
-    version = "0.7.2";
+    version = "0.7.3";
 
     src = pkgs.fetchurl {
       url = "https://github.com/RedMoonStudios/hetzner/archive/"
           + "v${version}.tar.gz";
-      sha256 = "07jnrgy9fkh1hwgsa8491ljz9spazmifqsg92m3xnamja1536qfl";
+      sha256 = "1a0kcwqd1pj5giwh75m2m3jcnr1kd38v40hh64wgly2zp485nm5m";
     };
 
     # not there yet, but coming soon.
@@ -6451,6 +6540,30 @@ let
     };
   };
 
+  infoqscraper = buildPythonPackage rec {
+    name = pname + "-" + version;
+    version = "0.1.0";
+    pname = "infoqscraper";
+
+    src = pkgs.fetchFromGitHub {
+      owner = "cykl";
+      repo = pname;
+      rev = "v" + version;
+      sha256 = "07mxp4mla7fwfc032f3mxrhjarnhkjqdxxibf9ba87c93z3dq8jj";
+    };
+
+    buildInputs = with self; [ html5lib ];
+    propagatedBuildInputs = (with self; [ six beautifulsoup4 ])
+                         ++ (with pkgs; [ ffmpeg swftools rtmpdump ]);
+
+    meta = {
+      description = "Discover presentations and/or create a movie consisting of slides and audio track from an infoq url";
+      homepage = "https://github.com/cykl/infoqscraper/wiki";
+      license = licenses.mit;
+      maintainers = with maintainers; [ edwtjo ];
+    };
+  };
+
   iptools = buildPythonPackage rec {
     version = "0.6.1";
     name = "iptools-${version}";
@@ -7022,7 +7135,10 @@ let
 
     src = pkgs.file.src;
 
-    patches = [ ../tools/misc/file/python.patch ];
+    patchPhase = ''
+      substituteInPlace python/magic.py --replace "find_library('magic')" "'${pkgs.file}/lib/libmagic.so'"
+    '';
+
     buildInputs = with self; [ python pkgs.file ];
 
     preConfigure = "cd python";
@@ -7308,11 +7424,11 @@ let
 
   rainbowstream = buildPythonPackage rec {
     name = "rainbowstream-${version}";
-    version = "1.2.5";
+    version = "1.2.7";
 
     src = pkgs.fetchurl {
       url    = "https://pypi.python.org/packages/source/r/rainbowstream/${name}.tar.gz";
-      sha256 = "1fch1vckzf4nmq67fk2jgfxpvyygviavx8di4xhjq2mib9nfc3mr";
+      sha256 = "1jvv07w9n7ca251l92alm2yq9w82sb7lvxz6if3gc3nbqzc587rf";
     };
 
     doCheck = false;
@@ -7556,6 +7672,21 @@ let
     propagatedBuildInputs = with self; [ eventlib application gnutls ];
   };
 
+  multipledispatch = buildPythonPackage rec {
+    name = "multipledispatch-${version}";
+    version = "0.4.8";
+
+    src = pkgs.fetchurl {
+      url = "https://pypi.python.org/packages/source/m/multipledispatch/${name}.tar.gz";
+      sha256 = "07d41fb3ed25e8424536e48a8566f88a0f9926ca4b6174bff6aa16c98251b92e";
+    };
+
+    meta = {
+      homepage = http://github.com/mrocklin/multipledispatch/;
+      description = "A relatively sane approach to multiple dispatch in Python";
+      license = licenses.bsd3;
+    };
+  };
 
   munkres = buildPythonPackage rec {
     name = "munkres-1.0.6";
@@ -8304,6 +8435,24 @@ let
     };
   });
 
+  odo = buildPythonPackage rec {
+    name = "odo-${version}";
+    version= "0.3.3";
+
+    src = pkgs.fetchurl {
+      url = "https://pypi.python.org/packages/source/o/odo/${name}.tar.gz";
+      sha256 = "2499ee86c26c74daa28f21ed235ca331911065950deea5169ebdb7d5dae6ebef";
+    };
+
+    propagatedBuildInputs = with self; [ datashape numpy pandas toolz multipledispatch networkx ];
+
+    meta = {
+      homepage = https://github.com/ContinuumIO/odo;
+      description = "Data migration utilities";
+      license = licenses.bsdOriginal;
+    };
+  };
+
   offtrac = buildPythonPackage rec {
     name = "offtrac-0.1.0";
     meta.maintainers = with maintainers; [ mornfall ];
@@ -8564,21 +8713,21 @@ let
   patsy = buildPythonPackage rec {
     name = "patsy-${version}";
     version = "0.3.0";
-    
+
     src = pkgs.fetchurl{
       url = "https://pypi.python.org/packages/source/p/patsy/${name}.zip";
       md5 = "7545518b413136ba8343dcebea07e5e2";
     };
-    
+
     propagatedBuildInputs = with self; [six numpy];
-    
+
     meta = {
       description = "A Python package for describing statistical models";
       homepage = "https://github.com/pydata/patsy";
       license = licenses.bsd2;
     };
   };
-  
+
   paste = buildPythonPackage rec {
     name = "paste-1.7.5.1";
     disabled = isPy3k;
@@ -8771,6 +8920,23 @@ let
     };
   };
 
+  pep257 = buildPythonPackage rec {
+    name = "pep257-${version}";
+    version = "0.3.2";
+
+    src = pkgs.fetchurl {
+      url = "https://github.com/GreenSteam/pep257/archive/${version}.tar.gz";
+      sha256 = "0v8aq0xzsa7clazszxl42904c3jpq69lg8a5hg754bqcqf72hfrn";
+    };
+
+    meta = {
+      homepage = https://github.com/GreenSteam/pep257/;
+      description = "Python docstring style checker";
+      longDescription = "Static analysis tool for checking compliance with Python PEP 257.";
+      lecense = licenses.mit;
+    };
+  };
+
   percol = buildPythonPackage rec {
     name = "percol-${version}";
     version = "0.0.8";
@@ -10278,6 +10444,22 @@ let
     };
   };
 
+  pystache = buildPythonPackage rec {
+    name = "pystache-${version}";
+    version = "0.5.4";
+
+    src = pkgs.fetchurl {
+      url = "https://pypi.python.org/packages/source/p/pystache/${name}.tar.gz";
+      sha256 = "f7bbc265fb957b4d6c7c042b336563179444ab313fb93a719759111eabd3b85a";
+    };
+
+    meta = {
+      description = "A framework-agnostic, logic-free templating system inspired by ctemplate and et";
+      homepage = https://github.com/defunkt/pystache;
+      license = licenses.mit;
+    };
+  };
+
   PyStemmer = buildPythonPackage (rec {
     name = "PyStemmer-1.3.0";
 
@@ -10483,6 +10665,21 @@ let
     propagatedBuildInputs = with self; [pkgs.openldap pkgs.cyrus_sasl pkgs.openssl];
   };
 
+  ptyprocess = buildPythonPackage rec {
+    name = "ptyprocess-${version}";
+    version = "0.5";
+
+    src = pkgs.fetchurl {
+      url = "https://pypi.python.org/packages/source/p/ptyprocess/${name}.tar.gz";
+      sha256= "dcb78fb2197b49ca1b7b2f37b047bc89c0da7a90f90bd5bc17c3ce388bb6ef59";
+    };
+
+    meta = {
+      description = "Run a subprocess in a pseudo terminal";
+      homepage = https://github.com/pexpect/ptyprocess;
+      license = licenses.isc;
+    };
+  };
 
   pylibacl = buildPythonPackage (rec {
     name = "pylibacl-0.5.1";
@@ -12206,19 +12403,19 @@ let
 
   sipsimple = buildPythonPackage rec {
     name = "sipsimple-${version}";
-    version = "2.4.0";
+    version = "2.5.0";
     disabled = isPy3k;
 
     configurePhase = "find -name 'configure' -exec chmod a+x {} \\; ; find -name 'aconfigure' -exec chmod a+x {} \\; ; ${python}/bin/${python.executable} setup.py build_ext --pjsip-clean-compile";
 
     src = pkgs.fetchurl {
       url = "http://download.ag-projects.com/SipClient/python-${name}.tar.gz";
-      sha256 = "f66543c680f22aa3cf86f55373a01a2bb699366a1be5e257c417d018696b6840";
+      sha256 = "1k97pdpqjs5dw7v73082jpqhv6xhlrdy987qbdb9a9zvfiz7q8sj";
     };
 
     propagatedBuildInputs = with self; [ cython pkgs.openssl dns dateutil xcaplib msrplib lxml ];
 
-    buildInputs = with pkgs; [ alsaLib ffmpeg libv4l pkgconfig sqlite ];
+    buildInputs = with pkgs; [ alsaLib ffmpeg libv4l pkgconfig sqlite libvpx ];
 
     installPhase = "${python}/bin/${python.executable} setup.py install --prefix=$out";
 
@@ -12938,6 +13135,23 @@ let
     };
   };
 
+  terminado = buildPythonPackage rec {
+    name = "terminado-${version}";
+    version = "0.5";
+
+    src = pkgs.fetchurl {
+      url = "https://pypi.python.org/packages/source/t/terminado/${name}.tar.gz";
+      sha256 = "63e893eff1ba84f1ee7c4bfcca7676ba1de6394538bb9aa80cbbc8866cb875b6";
+    };
+
+    propagatedBuildInputs = with self; [ ptyprocess tornado ];
+
+    meta = {
+      description = "Terminals served to term.js using Tornado websockets";
+      homepage = https://github.com/takluyver/terminado;
+      licenses = licenses.bsd2;
+    };
+  };
 
   testscenarios = buildPythonPackage rec {
     name = "testscenarios-${version}";
@@ -13084,19 +13298,19 @@ let
   toolz = buildPythonPackage rec{
     name = "toolz-${version}";
     version = "0.7.2";
-    
+
     src = pkgs.fetchurl{
       url = "https://pypi.python.org/packages/source/t/toolz/toolz-${version}.tar.gz";
       md5 = "6f045541a9e7ee755b7b00fced4a7fde";
     };
-    
+
     meta = {
       homepage = "http://github.com/pytoolz/toolz/";
       description = "List processing tools and functional utilities";
-      license = "licenses.bsd3";   
+      license = "licenses.bsd3";
     };
   };
-  
+
   tox = buildPythonPackage rec {
     name = "tox-1.8.1";
 
diff --git a/pkgs/top-level/rust-packages.nix b/pkgs/top-level/rust-packages.nix
index fe723a038e27..9d74ab88fc01 100644
--- a/pkgs/top-level/rust-packages.nix
+++ b/pkgs/top-level/rust-packages.nix
@@ -7,15 +7,15 @@
 { runCommand, fetchFromGitHub, git }:
 
 let
-  version = "2015-06-12";
-  rev = "020d1f3344ed8e7bd8fa740372bb7f03675fa708";
+  version = "2015-07-07";
+  rev = "fd9e3e4a350f5df0d975913bcc29d2051a509199";
 
   src = fetchFromGitHub {
       inherit rev;
 
       owner = "rust-lang";
       repo = "crates.io-index";
-      sha256 = "0vkr0k1ga0jskvl8ss7m5m66b4wwi7ibjj5qw0x0khcg1b5skkq6";
+      sha256 = "1vm28gfq4fmialz5ab8cxk5q1kdf6hlg3ni41qpy9k61pp9bqdwr";
   };
 
 in
author	William A. Kennington III <william@wkennington.com>	2015-07-13 15:11:31 -0700
committer	William A. Kennington III <william@wkennington.com>	2015-07-13 15:11:31 -0700
commit	333f145d7604f07e3b2164b459b46e075fea81f4 (patch)
tree	cb9bb91bafeafe64c97fa1054223c0d69cf18848 /pkgs
parent	d253b3d875d2bae84afbc141754b286e18e2fb7d (diff)
parent	7e3c95a0b813394b1a41b73e078d3ffd9e951979 (diff)
download	nixlib-333f145d7604f07e3b2164b459b46e075fea81f4.tar nixlib-333f145d7604f07e3b2164b459b46e075fea81f4.tar.gz nixlib-333f145d7604f07e3b2164b459b46e075fea81f4.tar.bz2 nixlib-333f145d7604f07e3b2164b459b46e075fea81f4.tar.lz nixlib-333f145d7604f07e3b2164b459b46e075fea81f4.tar.xz nixlib-333f145d7604f07e3b2164b459b46e075fea81f4.tar.zst nixlib-333f145d7604f07e3b2164b459b46e075fea81f4.zip