Merge master into staging-next

6 files changed, 137 insertions, 150 deletions

diff --git a/pkgs/top-level/aliases.nix b/pkgs/top-level/aliases.nix
index 1a5bf546a204..fe77a591876f 100644
--- a/pkgs/top-level/aliases.nix
+++ b/pkgs/top-level/aliases.nix
@@ -85,7 +85,6 @@ mapAliases ({
   evolution_data_server = evolution-data-server; # added 2018-02-25
   etcdctl = etcd; # added 2018-04-25
   exfat-utils = exfat;                  # 2015-09-11
-  fam = gamin; # added 2018-04-25
   ffadoFull = ffado; # added 2018-05-01
   firefox-esr-wrapper = firefox-esr;  # 2016-01
   firefox-wrapper = firefox;          # 2016-01
@@ -98,10 +97,8 @@ mapAliases ({
   gccApple = throw "gccApple is no longer supported"; # added 2018-04-25
   gdb-multitarget = gdb; # added 2017-11-13
   gettextWithExpat = gettext; # 2016-02-19
-  gflags = google-gflags; # added 2018-04-25
   git-hub = gitAndTools.git-hub; # added 2016-04-29
   glib_networking = glib-networking; # added 2018-02-25
-  gmock = gtest; # added 2018-04-25
   gnome-themes-standard = gnome-themes-extra; # added 2018-03-14
   gnome_doc_utils = gnome-doc-utils; # added 2018-02-25
   gnome_themes_standard = gnome-themes-standard; # added 2018-02-25
@@ -132,7 +129,6 @@ mapAliases ({
   iana_etc = iana-etc;  # added 2017-03-08
   idea = jetbrains; # added 2017-04-03
   inotifyTools = inotify-tools;
-  jack2Full = jack2; # added 2018-04-25
   joseki = apache-jena-fuseki; # added 2016-02-28
   json_glib = json-glib; # added 2018-02-25
   kdiff3-qt5 = kdiff3; # added 2017-02-18
@@ -140,7 +136,6 @@ mapAliases ({
   keepassx-community = keepassxc; # added 2017-11
   keepassx-reboot = keepassx-community; # added 2017-02-01
   keepassx2-http = keepassx-reboot; # added 2016-10-17
-  kerberos = libkrb5; # added 2018-04-25
   keybase-go = keybase;  # added 2016-08-24
   krename-qt5 = krename; # added 2017-02-18
   kvm = qemu_kvm; # added 2018-04-25
@@ -158,7 +153,6 @@ mapAliases ({
   libgumbo = gumbo; # added 2018-01-21
   libintlOrEmpty = stdenv.lib.optional (!stdenv.isLinux || hostPlatform.libc != "glibc") gettext; # added 2018-03-14
   libjson_rpc_cpp = libjson-rpc-cpp; # added 2017-02-28
-  liblrdf = librdf; # added 2018-04-25
   libmysql = mysql.connector-c; # added # 2017-12-28, this was a misnomer refering to libmysqlclient
   librecad2 = librecad;  # backwards compatibility alias, added 2015-10
   libsysfs = sysfsutils; # added 2018-04-25
@@ -170,7 +164,6 @@ mapAliases ({
   lua5_1_sockets = lua51Packages.luasocket; # added 2017-05-02
   lua5_expat = luaPackages.luaexpat; # added 2017-05-02
   lua5_sec = luaPackages.luasec; # added 2017-05-02
-  lzma = xz; # added 2018-04-25
   m3d-linux = m33-linux; # added 2016-08-13
   man_db = man-db; # added 2016-05
   manpages = man-pages; # added 2015-12-06
@@ -182,7 +175,6 @@ mapAliases ({
   mssys = ms-sys; # added 2015-12-13
   multipath_tools = multipath-tools;  # added 2016-01-21
   mupen64plus1_5 = mupen64plus; # added 2016-02-12
-  mysql = mariadb; # added 2018-04-25
   mysqlWorkbench = mysql-workbench; # added 2017-01-19
   nagiosPluginsOfficial = monitoring-plugins;
   ncat = nmap;  # added 2016-01-26
@@ -198,7 +190,6 @@ mapAliases ({
   nilfs_utils = nilfs-utils; # added 2018-04-25
   nmap_graphical = nmap-graphical;  # added 2017-01-19
   nologin = shadow; # added 2018-04-25
-  openal = openalSoft; # added 2018-04-25
   opencascade_oce = opencascade; # added 2018-04-25
   opencl-icd = ocl-icd; # added 2017-01-20
   openexr_ctl = ctl; # added 2018-04-25
@@ -217,7 +208,6 @@ mapAliases ({
   pidginwindowmerge = pidgin-window-merge; # added 2018-01-08
   piwik = matomo; # added 2018-01-16
   pltScheme = racket; # just to be sure
-  polarssl = mbedtls; # added 2018-04-25
   poppler_qt5 = libsForQt5.poppler;  # added 2015-12-19
   procps-ng = procps; # added 2018-06-08
   prometheus-statsd-bridge = prometheus-statsd-exporter;  # added 2017-08-27
@@ -229,7 +219,6 @@ mapAliases ({
   qwt6 = libsForQt5.qwt;  # added 2015-12-19
   rdiff_backup = rdiff-backup;  # added 2014-11-23
   rdmd = dtools;  # added 2017-08-19
-  redland = librdf_redland; # added 2018-04-25
   robomongo = robo3t; #added 2017-09-28
   rssglx = rss-glx; #added 2015-03-25
   ruby_2_0_0 = throw "deprecated 2018-0213: use a newer version of ruby";
@@ -261,7 +250,6 @@ mapAliases ({
   spice_protocol = spice-protocol; # added 2018-02-25
   sqlite3_analyzer = sqlite-analyzer; # added 2018-05-22
   sqliteInteractive = sqlite-interactive;  # added 2014-12-06
-  sshfs = sshfs-fuse; # added 2017-08-14
   sshfsFuse = sshfs-fuse; # added 2016-09
   suil-qt5 = suil; # added 2018-05-01
   surf-webkit2 = surf; # added 2017-04-02
@@ -289,7 +277,6 @@ mapAliases ({
   transmission_remote_gtk = transmission-remote-gtk; # added 2018-01-06
   tshark = wireshark-cli; # added 2018-04-25
   ucsFonts = ucs-fonts; # added 2016-07-15
-  udev = systemd; # added 2018-04-25
   ultrastardx-beta = ultrastardx; # added 2017-08-12
   usb_modeswitch = usb-modeswitch; # added 2016-05-10
   vimbWrapper = vimb; # added 2015-01
@@ -306,7 +293,6 @@ mapAliases ({
   xmonad_log_applet_gnome3 = xmonad_log_applet; # added 2018-05-01
   xf86_video_nouveau = xorg.xf86videonouveau; # added 2015-09
   xlibs = xorg; # added 2015-09
-  yacc = bison; # added 2018-04-25
   youtubeDL = youtube-dl;  # added 2014-10-26
 
   # added 2017-05-27
@@ -319,6 +305,11 @@ mapAliases ({
   libva-full = libva;
   libva1-full = libva1;
 
+  # forceSystem should not be used directly in Nixpkgs.
+  # added 2018-07-16
+  forceSystem = system: _:
+    (import self.path { localSystem = { inherit system; }; });
+
   inherit (ocaml-ng) # added 2016-09-14
     ocamlPackages_3_10_0 ocamlPackages_3_11_2 ocamlPackages_3_12_1
     ocamlPackages_4_00_1 ocamlPackages_4_01_0 ocamlPackages_4_02
@@ -347,5 +338,4 @@ mapAliases ({
   ocaml_4_01_0 = ocamlPackages_4_01_0.ocaml;
   ocaml_4_02   = ocamlPackages_4_02.ocaml;
   ocaml_4_03   = ocamlPackages_4_03.ocaml;
-  ocaml        = ocamlPackages.ocaml;
 }))
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index c1957bd65be5..eb793ab0b472 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -2864,6 +2864,8 @@ with pkgs;
   gt5 = callPackage ../tools/system/gt5 { };
 
   gtest = callPackage ../development/libraries/gtest {};
+  gmock = gtest; # TODO: move to aliases.nix
+
   gbenchmark = callPackage ../development/libraries/gbenchmark {};
 
   gtkdatabox = callPackage ../development/libraries/gtkdatabox {};
@@ -3394,7 +3396,7 @@ with pkgs;
 
   liquidsoap = callPackage ../tools/audio/liquidsoap/full.nix {
     ffmpeg = ffmpeg_2;
-    ocamlPackages = ocamlPackages_4_02;
+    ocamlPackages = ocaml-ng.ocamlPackages_4_02;
   };
 
   lksctp-tools = callPackage ../os-specific/linux/lksctp-tools { };
@@ -3729,6 +3731,7 @@ with pkgs;
   luxcorerender = callPackage ../tools/graphics/luxcorerender { };
 
   xz = callPackage ../tools/compression/xz { };
+  lzma = xz; # TODO: move to aliases.nix
 
   lz4 = callPackage ../tools/compression/lz4 { };
 
@@ -4035,7 +4038,7 @@ with pkgs;
 
   netboot = callPackage ../tools/networking/netboot {};
 
-  netcat = netcat-openbsd;
+  netcat = libressl.nc;
 
   netcat-gnu = callPackage ../tools/networking/netcat { };
 
@@ -4718,7 +4721,7 @@ with pkgs;
 
   qshowdiff = callPackage ../tools/text/qshowdiff { };
 
-  qtikz = callPackage ../applications/graphics/ktikz { };
+  qtikz = libsForQt5.callPackage ../applications/graphics/ktikz { };
 
   quicktun = callPackage ../tools/networking/quicktun { };
 
@@ -5070,7 +5073,7 @@ with pkgs;
 
   skippy-xd = callPackage ../tools/X11/skippy-xd {};
 
-  sks = callPackage ../servers/sks { inherit (ocamlPackages_4_02) ocaml camlp4; };
+  sks = callPackage ../servers/sks { inherit (ocaml-ng.ocamlPackages_4_02) ocaml camlp4; };
 
   skydns = callPackage ../servers/skydns { };
 
@@ -5174,6 +5177,7 @@ with pkgs;
   srcml = callPackage ../applications/version-management/srcml { };
 
   sshfs-fuse = callPackage ../tools/filesystems/sshfs-fuse { };
+  sshfs = sshfs-fuse; # added 2017-08-14
 
   sshlatex = callPackage ../tools/typesetting/sshlatex { };
 
@@ -5344,7 +5348,7 @@ with pkgs;
 
   texmaker = libsForQt5.callPackage ../applications/editors/texmaker { };
 
-  texstudio = callPackage ../applications/editors/texstudio { };
+  texstudio = libsForQt5.callPackage ../applications/editors/texstudio { };
 
   textadept = callPackage ../applications/editors/textadept { };
 
@@ -6978,6 +6982,7 @@ with pkgs;
   obliv-c = callPackage ../development/compilers/obliv-c {};
 
   ocaml-ng = callPackage ./ocaml-packages.nix { };
+  ocaml = ocamlPackages.ocaml;
 
   ocamlPackages = recurseIntoAttrs ocaml-ng.ocamlPackages;
 
@@ -6994,7 +6999,7 @@ with pkgs;
   ocsigen-i18n = callPackage ../development/tools/ocaml/ocsigen-i18n { };
 
   opa = callPackage ../development/compilers/opa {
-    ocamlPackages = ocamlPackages_4_02;
+    ocamlPackages = ocaml-ng.ocamlPackages_4_02;
   };
 
   opaline = callPackage ../development/tools/ocaml/opaline { };
@@ -7075,7 +7080,9 @@ with pkgs;
 
   scalafmt = callPackage ../development/tools/scalafmt { };
 
-  sdcc = callPackage ../development/compilers/sdcc { };
+  sdcc = callPackage ../development/compilers/sdcc {
+    gputils = null;
+  };
 
   serpent = callPackage ../development/compilers/serpent { };
 
@@ -7116,7 +7123,7 @@ with pkgs;
   };
 
   teyjus = callPackage ../development/compilers/teyjus {
-    inherit (ocamlPackages_4_02) ocaml;
+    inherit (ocaml-ng.ocamlPackages_4_02) ocaml;
     omake = omake_rc1;
   };
 
@@ -7838,6 +7845,7 @@ with pkgs;
   bison2 = callPackage ../development/tools/parsing/bison/2.x.nix { };
   bison3 = callPackage ../development/tools/parsing/bison/3.x.nix { };
   bison = bison3;
+  yacc = bison; # TODO: move to aliases.nix
 
   blackmagic = callPackage ../development/tools/misc/blackmagic {
     stdenv = overrideCC stdenv gcc6;
@@ -8164,6 +8172,8 @@ with pkgs;
 
   gotty = callPackage ../servers/gotty { };
 
+  gputils = callPackage ../development/tools/misc/gputils { };
+
   gradleGen = callPackage ../development/tools/build-managers/gradle { };
   gradle = self.gradleGen.gradle_latest;
   gradle_2_14 = self.gradleGen.gradle_2_14;
@@ -9220,6 +9230,7 @@ with pkgs;
   funambol = callPackage ../development/libraries/funambol { };
 
   gamin = callPackage ../development/libraries/gamin { };
+  fam = gamin; # added 2018-04-25
 
   ganv = callPackage ../development/libraries/ganv { };
 
@@ -9415,6 +9426,7 @@ with pkgs;
   goocanvas2 = callPackage ../development/libraries/goocanvas/2.x.nix { };
 
   google-gflags = callPackage ../development/libraries/google-gflags { };
+  gflags = google-gflags; # TODO: move to aliases.nix
 
   gperftools = callPackage ../development/libraries/gperftools { };
 
@@ -9830,6 +9842,7 @@ with pkgs;
     fetchurl = fetchurlBoot;
     type = "lib";
   };
+  kerberos = libkrb5; # TODO: move to aliases.nix
 
   languageMachines = recurseIntoAttrs (import ../development/libraries/languagemachines/packages.nix { inherit callPackage; });
 
@@ -10899,6 +10912,7 @@ with pkgs;
 
   mbedtls = callPackage ../development/libraries/mbedtls { };
   mbedtls_1_3 = callPackage ../development/libraries/mbedtls/1.3.nix { };
+  polarssl = mbedtls; # TODO: add to aliases.nix
 
   mdds_0_7_1 = callPackage ../development/libraries/mdds/0.7.1.nix { };
   mdds_0_12_1 = callPackage ../development/libraries/mdds/0.12.1.nix { };
@@ -11129,6 +11143,7 @@ with pkgs;
   openalSoft = callPackage ../development/libraries/openal-soft {
     inherit (darwin.apple_sdk.frameworks) CoreServices AudioUnit AudioToolbox;
   };
+  openal = openalSoft;
 
   openbabel = callPackage ../development/libraries/openbabel { };
 
@@ -11651,8 +11666,10 @@ with pkgs;
   librdf_rasqal = callPackage ../development/libraries/librdf/rasqal.nix { };
 
   librdf_redland = callPackage ../development/libraries/librdf/redland.nix { };
+  redland = librdf_redland; # added 2018-04-25
 
   librdf = callPackage ../development/libraries/librdf { };
+  liblrdf = librdf; # added 2018-04-25
 
   libsmf = callPackage ../development/libraries/audio/libsmf { };
 
@@ -12771,6 +12788,8 @@ with pkgs;
 
   home-assistant = callPackage ../servers/home-assistant { };
 
+  hydron = callPackage ../servers/hydron { };
+
   ircdHybrid = callPackage ../servers/irc/ircd-hybrid { };
 
   jboss = callPackage ../servers/http/jboss { };
@@ -12963,6 +12982,7 @@ with pkgs;
     inherit (darwin) cctools;
     inherit (pkgs.darwin.apple_sdk.frameworks) CoreServices;
   };
+  mysql = mariadb; # TODO: move to aliases.nix
 
   mongodb = callPackage ../servers/nosql/mongodb {
     sasl = cyrus_sasl;
@@ -13466,7 +13486,7 @@ with pkgs;
   directvnc = callPackage ../os-specific/linux/directvnc { };
 
   dmraid = callPackage ../os-specific/linux/dmraid {
-    devicemapper = devicemapper.override {enable_dmeventd = true;};
+    lvm2 = lvm2.override {enable_dmeventd = true;};
   };
 
   drbd = callPackage ../os-specific/linux/drbd { };
@@ -14376,6 +14396,7 @@ with pkgs;
   systemd = callPackage ../os-specific/linux/systemd {
     utillinux = utillinuxMinimal; # break the cyclic dependency
   };
+  udev = systemd; # TODO: move to aliases.nix
 
   # standalone cryptsetup generator for systemd
   systemd-cryptsetup-generator = callPackage ../os-specific/linux/systemd/cryptsetup-generator.nix { };
@@ -15618,13 +15639,11 @@ with pkgs;
   dmtx-utils = callPackage (callPackage ../tools/graphics/dmtx-utils) {
   };
 
-  # go 1.9 pin until https://github.com/moby/moby/pull/35739
-  inherit (callPackage ../applications/virtualization/docker { go = go_1_9; })
-    docker_18_03
-    docker_18_05;
+  inherit (callPackage ../applications/virtualization/docker {})
+    docker_18_06;
 
-  docker = docker_18_03;
-  docker-edge = docker_18_05;
+  docker = docker_18_06;
+  docker-edge = docker_18_06;
 
   docker-proxy = callPackage ../applications/virtualization/docker/proxy.nix { };
 
@@ -15913,7 +15932,7 @@ with pkgs;
   emacsPackagesNgGen = emacs: import ./emacs-packages.nix {
     inherit lib newScope stdenv;
     inherit fetchFromGitHub fetchgit fetchhg fetchurl fetchpatch;
-    inherit emacs texinfo makeWrapper runCommand;
+    inherit emacs texinfo makeWrapper runCommand writeText;
     inherit (xorg) lndir;
 
     trivialBuild = callPackage ../build-support/emacs/trivial.nix {
@@ -15927,7 +15946,8 @@ with pkgs;
     external = {
       inherit (haskellPackages) ghc-mod structured-haskell-mode Agda hindent;
       inherit (pythonPackages) elpy;
-      inherit rtags libffi autoconf automake libpng zlib poppler pkgconfig w3m;
+      inherit
+        autoconf automake git libffi libpng pkgconfig poppler rtags w3m zlib;
     };
   };
 
@@ -16418,7 +16438,7 @@ with pkgs;
   praat = callPackage ../applications/audio/praat { };
 
   quvi = callPackage ../applications/video/quvi/tool.nix {
-    lua5_sockets = lua5_1_sockets;
+    lua5_sockets = lua51Packages.luasocket;
     lua5 = lua5_1;
   };
 
@@ -16758,8 +16778,6 @@ with pkgs;
 
   inferno = pkgsi686Linux.callPackage ../applications/inferno { };
 
-  inginious = callPackage ../servers/inginious {};
-
   inkscape = callPackage ../applications/graphics/inkscape {
     lcms = lcms2;
     poppler = poppler_0_61;
@@ -16927,6 +16945,7 @@ with pkgs;
 
   krita = libsForQt5.callPackage ../applications/graphics/krita {
     openjpeg = openjpeg_1;
+    poppler_qt5 = libsForQt5.poppler;
   };
 
   krusader = libsForQt5.callPackage ../applications/misc/krusader { };
@@ -16935,6 +16954,8 @@ with pkgs;
 
   ktorrent = libsForQt5.callPackage ../applications/networking/p2p/ktorrent { };
 
+  ksonnet = callPackage ../applications/networking/cluster/ksonnet { };
+
   kubecfg = callPackage ../applications/networking/cluster/kubecfg { };
 
   kubernetes = callPackage ../applications/networking/cluster/kubernetes {  };
@@ -17130,6 +17151,8 @@ with pkgs;
   marathon = callPackage ../applications/networking/cluster/marathon { };
   marathonctl = callPackage ../tools/virtualization/marathonctl { } ;
 
+  markdown-pp = callPackage ../tools/text/markdown-pp { };
+
   marp = callPackage ../applications/office/marp { };
 
   matchbox = callPackage ../applications/window-managers/matchbox { };
@@ -17343,8 +17366,11 @@ with pkgs;
     xvSupport          = !stdenv.isDarwin;
   };
 
+  mpv-with-scripts = callPackage ../applications/video/mpv/wrapper.nix { };
+
   mpvScripts = {
     convert = callPackage ../applications/video/mpv/scripts/convert.nix {};
+    mpris = callPackage ../applications/video/mpv/scripts/mpris.nix {};
   };
 
   mrpeach = callPackage ../applications/audio/pd-plugins/mrpeach { };
@@ -17476,6 +17502,7 @@ with pkgs;
   synfigstudio = callPackage ../applications/graphics/synfigstudio {
     fontsConf = makeFontsConf { fontDirectories = [ freefont_ttf ]; };
     inherit (gnome3) defaultIconTheme;
+    mlt-qt5 = libsForQt5.mlt;
   };
 
   typora = callPackage ../applications/editors/typora { };
@@ -17645,7 +17672,10 @@ with pkgs;
 
   opusTools = callPackage ../applications/audio/opus-tools { };
 
-  orpie = callPackage ../applications/misc/orpie { gsl = gsl_1; ocamlPackages = ocamlPackages_4_02; };
+  orpie = callPackage ../applications/misc/orpie {
+    gsl = gsl_1;
+    ocamlPackages = ocaml-ng.ocamlPackages_4_02;
+  };
 
   osmo = callPackage ../applications/office/osmo { };
 
@@ -18651,6 +18681,8 @@ with pkgs;
 
   vcprompt = callPackage ../applications/version-management/vcprompt { };
 
+  vcv-rack = callPackage ../applications/audio/vcv-rack { };
+
   vdirsyncer = callPackage ../tools/misc/vdirsyncer { };
 
   vdpauinfo = callPackage ../tools/X11/vdpauinfo { };
@@ -19681,6 +19713,8 @@ with pkgs;
 
   nethack = callPackage ../games/nethack { };
 
+  nethack-qt = callPackage ../games/nethack { qtMode = true; };
+
   nethack-x11 = callPackage ../games/nethack { x11Mode = true; };
 
   neverball = callPackage ../games/neverball { };
@@ -20554,8 +20588,10 @@ with pkgs;
 
   boogie = dotnetPackages.Boogie;
 
-  inherit (callPackage ./coq-packages.nix {})
-    mkCoqPackages
+  inherit (callPackage ./coq-packages.nix {
+    inherit (ocaml-ng) ocamlPackages_3_12_1
+                       ocamlPackages_4_02;
+  }) mkCoqPackages
     coq_8_3 coq_8_4 coq_8_5 coq_8_6 coq_8_7 coq_8_8
     coqPackages_8_5 coqPackages_8_6 coqPackages_8_7 coqPackages_8_8
     coqPackages coq
@@ -20579,7 +20615,7 @@ with pkgs;
   drat-trim = callPackage ../applications/science/logic/drat-trim {};
 
   ekrhyper = callPackage ../applications/science/logic/ekrhyper {
-    inherit (ocamlPackages_4_02) ocaml;
+    inherit (ocaml-ng.ocamlPackages_4_02) ocaml;
   };
 
   eprover = callPackage ../applications/science/logic/eprover { };
@@ -20612,7 +20648,7 @@ with pkgs;
   };
 
   iprover = callPackage ../applications/science/logic/iprover {
-    inherit (ocamlPackages_4_02) ocaml;
+    inherit (ocaml-ng.ocamlPackages_4_02) ocaml;
   };
 
   jonprl = callPackage ../applications/science/logic/jonprl {
@@ -20627,7 +20663,7 @@ with pkgs;
   elan = callPackage ../applications/science/logic/elan {};
 
   leo2 = callPackage ../applications/science/logic/leo2 {
-     ocaml = ocamlPackages_4_01_0.ocaml;};
+     ocaml = ocaml-ng.ocamlPackages_4_01_0.ocaml;};
 
   logisim = callPackage ../applications/science/logic/logisim {};
 
@@ -20656,7 +20692,7 @@ with pkgs;
 
   libpoly = callPackage ../applications/science/logic/poly {};
 
-  prooftree = (with ocamlPackages_4_01_0;
+  prooftree = (with ocaml-ng.ocamlPackages_4_01_0;
     callPackage  ../applications/science/logic/prooftree {
       camlp5 = camlp5_transitional;
     });
@@ -20668,7 +20704,7 @@ with pkgs;
   sapic = callPackage ../applications/science/logic/sapic { };
 
   satallax = callPackage ../applications/science/logic/satallax {
-    ocaml = ocamlPackages_4_01_0.ocaml;
+    ocaml = ocaml-ng.ocamlPackages_4_01_0.ocaml;
   };
 
   saw-tools = callPackage ../applications/science/logic/saw-tools {};
@@ -21197,6 +21233,7 @@ with pkgs;
     inherit (darwin.apple_sdk.frameworks) AudioToolbox CoreAudio CoreFoundation;
   };
   libjack2 = jack2.override { prefix = "lib"; };
+  jack2Full = jack2; # TODO: move to aliases.nix
 
   keynav = callPackage ../tools/X11/keynav { };
 
@@ -21212,7 +21249,7 @@ with pkgs;
     lilypond = lilypond-unstable;
   };
 
-  lollypop-portal = callPackages ../misc/lollypop-portal { };
+  lollypop-portal = callPackage ../misc/lollypop-portal { };
 
   openlilylib-fonts = callPackage ../misc/lilypond/fonts.nix { };
 
@@ -21744,6 +21781,8 @@ with pkgs;
 
   xinput_calibrator = callPackage ../tools/X11/xinput_calibrator { };
 
+  xlog = callPackage ../applications/misc/xlog { };
+
   xmagnify = callPackage ../tools/X11/xmagnify { };
 
   xosd = callPackage ../misc/xosd { };
diff --git a/pkgs/top-level/emacs-packages.nix b/pkgs/top-level/emacs-packages.nix
index c4c264c811ad..f6c992d5bd5f 100644
--- a/pkgs/top-level/emacs-packages.nix
+++ b/pkgs/top-level/emacs-packages.nix
@@ -32,7 +32,7 @@
 #   `meta` with `platforms` and `homepage` set to something you are
 #   unlikely to want to override for most packages
 
-{ lib, newScope, stdenv, fetchurl, fetchgit, fetchFromGitHub, fetchhg, fetchpatch, runCommand
+{ lib, newScope, stdenv, fetchurl, fetchgit, fetchFromGitHub, fetchhg, fetchpatch, runCommand, writeText
 
 , emacs, texinfo, lndir, makeWrapper
 , trivialBuild
@@ -50,7 +50,7 @@ let
   };
 
   melpaStablePackages = import ../applications/editors/emacs-modes/melpa-stable-packages.nix {
-    inherit lib;
+    inherit external lib;
   };
 
   melpaPackages = import ../applications/editors/emacs-modes/melpa-packages.nix {
@@ -99,7 +99,11 @@ let
     nativeBuildInputs = [ external.pkgconfig ];
     buildInputs = with external; [ autoconf automake libpng zlib poppler ];
     preBuild = "make server/epdfinfo";
-    fileSpecs = [ "lisp/pdf-*.el" "server/epdfinfo" ];
+    recipe = writeText "recipe" ''
+      (pdf-tools
+       :repo "politza/pdf-tools" :fetcher github
+       :files ("lisp/pdf-*.el" "server/epdfinfo"))
+    '';
     packageRequires = [ tablist let-alist ];
     meta = {
       description = "Emacs support library for PDF files";
@@ -118,7 +122,12 @@ let
     };
     buildInputs = [ external.libffi ];
     preBuild = "make";
-    files = [ "ffi-glue" "ffi.el" ];
+    recipe = writeText "recipe" ''
+      (elisp-ffi
+      :repo "skeeto/elisp-ffi"
+      :fetcher github
+      :files ("ffi-glue" "ffi.el"))
+    '';
     meta = {
       description = "Emacs Lisp Foreign Function Interface";
       longDescription = ''
@@ -163,6 +172,9 @@ let
       rev    = "39ea47c73f040ce8dcc1c2d2639ebc0eb57ab8c8";
       sha256 = "0q3av1qv4m6aj4bil608f688hjpr5px8zqnnrdqx784nz98rpjrs";
     };
+    recipe = writeText "recipe" ''
+      (elpy :repo "jorgenschaefer/elpy" :fetcher github)
+    '';
 
     patchPhase = ''
       for file in elpy.el elpy-pkg.el; do
@@ -203,6 +215,9 @@ let
       rev    = "fcadf2d93aaea3ba88a2ae63a860b9c1f0568167";
       sha256 = "0axx6cc9z9c1wh7qgm6ya54dsp3bn82bnb0cwj1rpv509qqmwgsj";
     };
+    recipe = writeText "recipe" ''
+      (evil-jumper :repo "bling/evil-jumper" :fetcher github)
+    '';
     packageRequires = [ evil ];
     meta = {
       description = "Jump across buffer boundaries and revive dead buffers if necessary";
@@ -222,6 +237,11 @@ let
       rev    = "53a8d8174f915d9dcf5ac6954b1c0cae61266177";
       sha256 = "0wky8vqg08iw34prbz04bqmhfhj82y93swb8zkz6la2vf9da0gmd";
     };
+    recipe = writeText "recipe" ''
+      (find-file-in-project
+       :repo "technomancy/find-file-in-project"
+       :fetcher github)
+    '';
     meta = {
       description = "Quick access to project files in Emacs";
       longDescription = ''
@@ -243,6 +263,9 @@ let
     src = external.ghc-mod.src;
     packageRequires = [ haskell-mode ];
     propagatedUserEnvPkgs = [ external.ghc-mod ];
+    recipe = writeText "recipe" ''
+      (ghc-mod :repo "DanielG/ghc-mod" :fetcher github :files ("elisp/*.el"))
+    '';
     fileSpecs = [ "elisp/*.el" ];
     meta = {
       description = "An extension of haskell-mode that provides completion of symbols and documentation browsing";
@@ -259,6 +282,11 @@ let
       rev = "d8d168148c187ed19350bb7a1a190217c2915a63";
       sha256 = "09b7bg2s9aa4s8f2kdqs4xps3jxkq5wsvbi87ih8b6id38blhf78";
     };
+    recipe = writeText "recipe" ''
+      (haskell-unicode-input-method
+       :repo "roelvandijk/emacs-haskell-unicode-input-method"
+       :fetcher github)
+    '';
     packageRequires = [];
     meta = {
       homepage = "https://melpa.org/#haskell-unicode-input-method/";
@@ -278,7 +306,11 @@ let
     src = external.hindent.src;
     packageRequires = [ haskell-mode ];
     propagatedUserEnvPkgs = [ external.hindent ];
-    fileSpecs = [ "elisp/*.el" ];
+    recipe = writeText "recipe" ''
+      (hindent
+       :repo "commercialhaskell/hindent" :fetcher github
+       :files ("elisp/*.el"))
+    '';
     meta = {
       description = "Indent haskell code using the \"hindent\" program";
       license = bsd3;
@@ -297,7 +329,11 @@ let
     configurePhase = ":";
 
     propagatedUserEnvPkgs = [ external.rtags ];
-    fileSpecs = [ "src/*.el" ];
+    recipe = writeText "recipe" ''
+      (rtags
+       :repo "andersbakken/rtags" :fetcher github
+       :files ("src/*.el"))
+    '';
     inherit (external.rtags) meta;
   };
 
@@ -305,7 +341,9 @@ let
     pname   = "lcs";
     version = circe.version;
     src     = circe.src;
-    fileSpecs = [ "lcs.el" ];
+    recipe  = writeText "recipe" ''
+      (lcs :repo "jorgenschaefer/circe" :fetcher github :files ("lcs.el"))
+    '';
     meta = {
       description = "Longest Common Sequence (LCS) library for Emacs";
       license = gpl3Plus;
@@ -320,7 +358,9 @@ let
     version = circe.version;
     src     = circe.src;
     packageRequires = [ tracking ];
-    fileSpecs = [ "lui*.el" ];
+    recipe  = writeText "recipe" ''
+      (lcs :repo "jorgenschaefer/circe" :fetcher github :files ("lui*.el"))
+    '';
     meta = {
       description = "User interface library for Emacs";
       license = gpl3Plus;
@@ -345,7 +385,9 @@ let
     pname   = "shorten";
     version = circe.version;
     src     = circe.src;
-    fileSpecs = [ "shorten.el" ];
+    recipe  = writeText "recipe" ''
+      (shorten :repo "jorgenschaefer/circe" :fetcher github :files ("shorten.el"))
+    '';
     meta = {
       description = "String shortening to unique prefix library for Emacs";
       license = gpl3Plus;
@@ -354,20 +396,10 @@ let
 
   stgit = callPackage ../applications/editors/emacs-modes/stgit { };
 
-  structured-haskell-mode = melpaBuild rec {
-    pname = "shm";
-    version = external.structured-haskell-mode.version;
-    src = external.structured-haskell-mode.src;
-    packageRequires = [ haskell-mode ];
-    fileSpecs = [ "elisp/*.el" ];
+  structured-haskell-mode = self.shm;
+  shm = (melpaPackages self).shm.overrideAttrs (attrs: {
     propagatedUserEnvPkgs = [ external.structured-haskell-mode ];
-
-    meta = {
-      description = "Structured editing Emacs mode for Haskell";
-      license = bsd3;
-      platforms = external.structured-haskell-mode.meta.platforms;
-    };
-  };
+  });
 
   thingatpt-plus = callPackage ../applications/editors/emacs-modes/thingatpt-plus { };
 
@@ -386,6 +418,9 @@ let
       rm weechat-sauron.el weechat-secrets.el
     '';
     packageRequires = [ s ];
+    recipe = writeText "recipe" ''
+      (weechat :repo "the-kenny/weechat" :fetcher github)
+    '';
     meta = {
       description = "A weechat IRC client frontend for Emacs";
       license = gpl3Plus;
diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index e4f63e2347eb..c3465fbda44a 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -12334,7 +12334,7 @@ let self = _self // overrides; _self = with self; {
       url = "https://alioth.debian.org/frs/download.php/file/4142/po4a-0.47.tar.gz";
       sha256 = "5010e1b7df1115cbd475f46587fc05fefc97301f9bba0c2f15106005ca017507";
     };
-    nativeBuildInputs = [ pkgs.docbook_xml_xslt pkgs.docbook_xsl pkgs.docbook_xsl_ns ];
+    nativeBuildInputs = [ pkgs.docbook_xsl pkgs.docbook_xsl pkgs.docbook_xsl_ns ];
     propagatedBuildInputs = [ TextWrapI18N LocaleGettext TermReadKey SGMLSpm ModuleBuild UnicodeLineBreak ModuleBuild ];
     buildInputs = [ pkgs.gettext pkgs.libxslt pkgs.glibcLocales pkgs.docbook_xml_dtd_412 pkgs.docbook_sgml_dtd_41 pkgs.texlive.combined.scheme-basic pkgs.jade ];
     LC_ALL="en_US.UTF-8";
@@ -17776,7 +17776,7 @@ let self = _self // overrides; _self = with self; {
     };
   };
 
-} // stdenv.lib.optionalAttrs (config.skipAliases or false == false) {
+} // stdenv.lib.optionalAttrs (config.allowAliases or true) {
   autodie = null; # part of Perl
   AutoLoader = null; # part of Perl 5.22
   constant = null; # part of Perl 5.22
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 43d9f110a757..dddfa74f43ee 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -5473,23 +5473,6 @@ in {
 
   flask-babel = callPackage ../development/python-modules/flask-babel { };
 
-  flask_cache = buildPythonPackage rec {
-    name = "Flask-Cache-0.13.1";
-
-    src = pkgs.fetchurl {
-      url = "mirror://pypi/F/Flask-Cache/${name}.tar.gz";
-      sha256 = "90126ca9bc063854ef8ee276e95d38b2b4ec8e45fd77d5751d37971ee27c7ef4";
-    };
-
-    propagatedBuildInputs = with self; [ werkzeug flask ];
-
-    meta = {
-      homepage = https://github.com/thadeusb/flask-cache;
-      description = "Adds cache support to your Flask application";
-      license = "BSD";
-    };
-  };
-
   flask-caching = callPackage ../development/python-modules/flask-caching { };
 
   flask-common = callPackage ../development/python-modules/flask-common { };
@@ -7111,7 +7094,7 @@ in {
 
   locustio = callPackage ../development/python-modules/locustio { };
 
-  llvmlite = callPackage ../development/python-modules/llvmlite { llvm = pkgs.llvm; };
+  llvmlite = callPackage ../development/python-modules/llvmlite { llvm = pkgs.llvm_6; };
 
   lockfile = buildPythonPackage rec {
     pname = "lockfile";
@@ -12612,30 +12595,6 @@ in {
 
   simplejson = callPackage ../development/python-modules/simplejson { };
 
-  simpleldap = buildPythonPackage rec {
-    version = "0.8";
-    name = "simpleldap-${version}";
-
-    propagatedBuildInputs = with self; [ ldap ];
-    buildInputs = with self; [ pep8 pytest tox ];
-
-    src = pkgs.fetchurl {
-      url = "mirror://pypi/s/simpleldap/simpleldap-${version}.tar.gz";
-      sha256 = "a5916680a7fe1b2c5d74dc76351be2941d03b7b94a50d8520280e3f588a84e61";
-    };
-
-    meta = {
-      description = "A module that makes simple LDAP usage simple";
-      longDescription = ''
-        A small wrapper around the python-ldap library that provides a more
-        Pythonic interface for LDAP server connections, LDAP objects, and the
-        common get and search operations.
-      '';
-      license = licenses.mit;
-      maintainers = with maintainers; [ layus ];
-    };
-  };
-
   simpleparse = buildPythonPackage rec {
     version = "2.1.1";
     name = "simpleparse-${version}";
@@ -15812,44 +15771,7 @@ EOF
     };
   };
 
-  graphite_api = buildPythonPackage rec {
-    name = "graphite-api-1.0.1";
-    disabled = isPyPy;
-
-    src = pkgs.fetchgit {
-      url = "https://github.com/brutasse/graphite-api.git";
-      rev = "b6f75e8a08fae695c094fece6de611b893fc65fb";
-      sha256 = "1n8h5krhv7hzmn336y9vjrmv6b6009lz5hj0d9wz7v1k2500ws5k";
-    };
-
-    checkPhase = "nosetests";
-
-    propagatedBuildInputs = with self; [
-      flask
-      flask_cache
-      cairocffi
-      pyparsing
-      pytz
-      pyyaml
-      raven
-      six
-      structlog
-      tzlocal
-    ];
-
-    buildInputs = with self; [
-      nose
-      mock
-    ];
-
-    LD_LIBRARY_PATH = "${pkgs.cairo.out}/lib";
-
-    meta = {
-      description = "Graphite-web, without the interface. Just the rendering HTTP API";
-      homepage = https://github.com/brutasse/graphite-api;
-      license = licenses.asl20;
-    };
-  };
+  graphite_api = callPackage ../development/python-modules/graphite-api { };
 
   graphite_beacon = buildPythonPackage rec {
     name = "graphite_beacon-0.27.0";
@@ -18010,6 +17932,8 @@ EOF
   qiskit = callPackage ../development/python-modules/qiskit { };
 
   qasm2image = callPackage ../development/python-modules/qasm2image { };
+
+  simpy = callPackage ../development/python-modules/simpy { };
 });
 
 in fix' (extends overrides packages)
diff --git a/pkgs/top-level/stage.nix b/pkgs/top-level/stage.nix
index cc70950c497c..5b802aea0758 100644
--- a/pkgs/top-level/stage.nix
+++ b/pkgs/top-level/stage.nix
@@ -97,8 +97,7 @@ let
       res self;
     in res;
 
-  aliases = self: super: if config.skipAliases or false then {}
-                         else import ./aliases.nix lib self super;
+  aliases = self: super: lib.optionalAttrs (config.allowAliases or true) (import ./aliases.nix lib self super);
 
   # stdenvOverrides is used to avoid having multiple of versions
   # of certain dependencies that were used in bootstrapping the