Merge master into staging

4 files changed, 106 insertions, 14 deletions

diff --git a/pkgs/top-level/aliases.nix b/pkgs/top-level/aliases.nix
index 4b4991cf9791..dabbfcd6d49b 100644
--- a/pkgs/top-level/aliases.nix
+++ b/pkgs/top-level/aliases.nix
@@ -384,7 +384,7 @@ mapAliases ({
   ruby_2_5_0 = throw "deprecated 2018-0213: use a newer version of ruby";
   rubyPackages_2_4 = throw "deprecated 2019-12: use a newer version of rubyPackages instead";
   rubygems = throw "deprecated 2016-03-02: rubygems is now bundled with ruby";
-  rxvt_unicode_with-plugins = rxvt-unicode; # added 2020-02-02
+  rxvt_unicode-with-plugins = rxvt-unicode; # added 2020-02-02
   rxvt_unicode = rxvt-unicode-unwrapped; # added 2020-02-02
   urxvt_autocomplete_all_the_things = rxvt-unicode-plugins.autocomplete-all-the-things; # added 2020-02-02
   urxvt_perl = rxvt-unicode-plugins.perl; # added 2020-02-02
@@ -569,6 +569,9 @@ mapAliases ({
   # added 2020-01-10
   tor-browser-unwrapped = throw "tor-browser-unwrapped was removed because it was out of date and inadequately maintained. Please use tor-browser-bundle-bin instead. See #77452.";
 
+  # added 2020-02-09
+  dina-font-pcf = dina-font;
+
     /* Cleanup before 20.09 */
   llvm_4 = throw ''
     The LLVM versions 3.5, 3.9 and 4.0 have been removed in NixOS 20.03
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 731c6009b547..81cf2c0220e3 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -203,7 +203,7 @@ in
 
   docker-ls = callPackage ../tools/misc/docker-ls { };
 
-  docker-slim = callPackage ../build-support/docker-slim { };
+  docker-slim = callPackage ../applications/virtualization/docker-slim { };
 
   docker-sync = callPackage ../tools/misc/docker-sync { };
 
@@ -1139,6 +1139,8 @@ in
 
   bdf2psf = callPackage ../tools/misc/bdf2psf { };
 
+  bdf2sfd = callPackage ../tools/misc/bdf2sfd { };
+
   bcat = callPackage ../tools/text/bcat {};
 
   bcache-tools = callPackage ../tools/filesystems/bcache-tools { };
@@ -1322,6 +1324,7 @@ in
   bs-platform = callPackage ../development/compilers/bs-platform {};
 
   c3d = callPackage ../applications/graphics/c3d {
+    stdenv = gcc8Stdenv;
     inherit (darwin.apple_sdk.frameworks) Cocoa;
   };
 
@@ -2261,8 +2264,12 @@ in
 
   bgs = callPackage ../tools/X11/bgs { };
 
+  bibclean = callPackage ../tools/typesetting/bibclean { };
+
   biber = callPackage ../tools/typesetting/biber { };
 
+  biblatex-check = callPackage ../tools/typesetting/biblatex-check { };
+
   birdfont = callPackage ../tools/misc/birdfont { };
   xmlbird = callPackage ../tools/misc/birdfont/xmlbird.nix { };
 
@@ -2860,6 +2867,8 @@ in
 
   docbook2mdoc = callPackage ../tools/misc/docbook2mdoc { };
 
+  docbookrx = callPackage ../tools/typesetting/docbookrx { };
+
   docear = callPackage ../applications/office/docear { };
 
   dockbarx = callPackage ../applications/misc/dockbarx { };
@@ -2979,6 +2988,8 @@ in
     ssh = openssh;
   };
 
+  kramdown-asciidoc = callPackage ../tools/typesetting/kramdown-asciidoc { };
+
   mcrcon = callPackage ../tools/networking/mcrcon {};
 
   rage = callPackage ../tools/security/rage {
@@ -10521,6 +10532,8 @@ in
 
   rr = callPackage ../development/tools/analysis/rr { };
 
+  samurai = callPackage ../development/tools/build-managers/samurai { };
+
   saleae-logic = callPackage ../development/tools/misc/saleae-logic { };
 
   sauce-connect = callPackage ../development/tools/sauce-connect { };
@@ -11474,7 +11487,9 @@ in
     libXpm = null;
   };
 
-  gdal = callPackage ../development/libraries/gdal { };
+  gdal = callPackage ../development/libraries/gdal {
+    pythonPackages = python3Packages; 
+  };
 
   gdal_1_11 = callPackage ../development/libraries/gdal/gdal-1_11.nix { };
 
@@ -14458,6 +14473,8 @@ in
   tk-8_6 = callPackage ../development/libraries/tk/8.6.nix { };
   tk-8_5 = callPackage ../development/libraries/tk/8.5.nix { tcl = tcl-8_5; };
 
+  tl-expected = callPackage ../development/libraries/tl-expected { };
+
   tnt = callPackage ../development/libraries/tnt { };
 
   tntnet = callPackage ../development/libraries/tntnet { };
@@ -15370,6 +15387,8 @@ in
 
   miniHttpd = callPackage ../servers/http/mini-httpd {};
 
+  mlflow-server = callPackage ../servers/mlflow-server { };
+  
   mlmmj = callPackage ../servers/mail/mlmmj { };
 
   moodle = callPackage ../servers/web-apps/moodle { };
@@ -17381,11 +17400,13 @@ in
 
   culmus = callPackage ../data/fonts/culmus { };
 
-  clearlyU = callPackage ../data/fonts/clearlyU { };
+  clearlyU = callPackage ../data/fonts/clearlyU
+    { inherit (buildPackages.xorg) fonttosfnt mkfontscale; };
 
   cm_unicode = callPackage ../data/fonts/cm-unicode {};
 
-  creep = callPackage ../data/fonts/creep { };
+  creep = callPackage ../data/fonts/creep
+    { inherit (buildPackages.xorg) fonttosfnt mkfontscale; };
 
   crimson = callPackage ../data/fonts/crimson {};
 
@@ -17397,9 +17418,8 @@ in
     paths = [ dejavu_fonts.out ];
   };
 
-  dina-font = callPackage ../data/fonts/dina { };
-
-  dina-font-pcf = callPackage ../data/fonts/dina-pcf { };
+  dina-font = callPackage ../data/fonts/dina
+    { inherit (buildPackages.xorg) mkfontscale; };
 
   dns-root-data = callPackage ../data/misc/dns-root-data { };
 
@@ -17483,7 +17503,8 @@ in
 
   encode-sans = callPackage ../data/fonts/encode-sans { };
 
-  envypn-font = callPackage ../data/fonts/envypn-font { };
+  envypn-font = callPackage ../data/fonts/envypn-font
+    { inherit (buildPackages.xorg) fonttosfnt mkfontscale; };
 
   envdir = callPackage ../tools/misc/envdir-go { };
 
@@ -17512,7 +17533,8 @@ in
 
   geolite-legacy = callPackage ../data/misc/geolite-legacy { };
 
-  gohufont = callPackage ../data/fonts/gohufont { };
+  gohufont = callPackage ../data/fonts/gohufont
+    { inherit (buildPackages.xorg) fonttosfnt mkfontscale; };
 
   gnome-user-docs = callPackage ../data/documentation/gnome-user-docs { };
 
@@ -17795,7 +17817,8 @@ in
     inherit (darwin.apple_sdk.frameworks) Security;
   };
 
-  profont = callPackage ../data/fonts/profont { };
+  profont = callPackage ../data/fonts/profont
+    { inherit (buildPackages.xorg) mkfontscale; };
 
   proggyfonts = callPackage ../data/fonts/proggyfonts { };
 
@@ -18153,6 +18176,8 @@ in
 
   argo = callPackage ../applications/networking/cluster/argo { };
 
+  argocd = callPackage ../applications/networking/cluster/argocd { };
+
   ario = callPackage ../applications/audio/ario { };
 
   arion = callPackage ../applications/virtualization/arion { };
@@ -19027,7 +19052,9 @@ in
 
   gr-osmosdr = callPackage ../applications/radio/gnuradio/osmosdr.nix { };
 
-  goldendict = libsForQt5.callPackage ../applications/misc/goldendict { };
+  goldendict = libsForQt5.callPackage ../applications/misc/goldendict {
+    inherit (darwin) libiconv;
+  };
 
   gomuks = callPackage ../applications/networking/instant-messengers/gomuks { };
 
@@ -20798,6 +20825,8 @@ in
 
   paprefs = callPackage ../applications/audio/paprefs { };
 
+  pantalaimon = python3Packages.callPackage ../applications/networking/instant-messengers/pantalaimon { };
+
   pavucontrol = callPackage ../applications/audio/pavucontrol { };
 
   paraview = libsForQt5.callPackage ../applications/graphics/paraview { };
@@ -21594,11 +21623,13 @@ in
     systemdSupport = true;
   };
 
-  synergy = callPackage ../applications/misc/synergy {
+  synergy = libsForQt5.callPackage ../applications/misc/synergy {
     stdenv = if stdenv.cc.isClang then llvmPackages_5.stdenv else stdenv;
     inherit (darwin.apple_sdk.frameworks) ApplicationServices Carbon Cocoa CoreServices ScreenSaver;
   };
 
+  synergyWithoutGUI = synergy.override { withGUI = false; };
+
   tabbed = callPackage ../applications/window-managers/tabbed {
     # if you prefer a custom config, write the config.h in tabbed.config.h
     # and enable
@@ -23185,7 +23216,10 @@ in
 
   openclonk = callPackage ../games/openclonk { };
 
-  openjk = callPackage ../games/openjk { };
+  openjk = callPackage ../games/openjk {
+    # segfaults when built with gcc9
+    stdenv = gcc8Stdenv;
+  };
 
   openmw = libsForQt5.callPackage ../games/openmw { };
 
@@ -25943,4 +25977,5 @@ in
 
   quartus-prime-lite = callPackage ../applications/editors/quartus-prime {};
 
+  go-license-detector = callPackage ../development/tools/misc/go-license-detector { };
 }
diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 7a34d1f8ee6a..562e96246bf0 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -9759,6 +9759,28 @@ let
     };
   };
 
+  LaTeXML = buildPerlPackage {
+    pname = "LaTeXML";
+    version = "0.8.4";
+    src = fetchurl {
+      url = "mirror://cpan/authors/id/B/BR/BRMILLER/LaTeXML-0.8.4.tar.gz";
+      sha256 = "92599b45fb587ac14b2ba9cc84b85d9ddc2deaf1cbdc2e89e7a6559e1fbb34cc";
+    };
+    propagatedBuildInputs = [ ArchiveZip DBFile FileWhich IOString ImageSize JSONXS LWP ParseRecDescent TextUnidecode URI XMLLibXML XMLLibXSLT shortenPerlShebang ];
+    doCheck = false;  # epub test fails
+    postInstall = ''
+      shortenPerlShebang $out/bin/latexml
+      shortenPerlShebang $out/bin/latexmlc
+      shortenPerlShebang $out/bin/latexmlfind
+      shortenPerlShebang $out/bin/latexmlmath
+      shortenPerlShebang $out/bin/latexmlpost
+    '';
+    meta = {
+      description = "Transforms TeX and LaTeX into XML/HTML/MathML";
+      license = stdenv.lib.licenses.free;
+    };
+  };
+
   libapreq2 = buildPerlPackage {
     pname = "libapreq2";
     version = "2.13";
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 04fd9e76192d..9dfa595f231b 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -574,6 +574,8 @@ in {
 
   btchip = callPackage ../development/python-modules/btchip { };
 
+  databricks-cli = callPackage ../development/python-modules/databricks-cli { };
+
   datatable = callPackage ../development/python-modules/datatable {
     inherit (pkgs.llvmPackages) openmp libcxx libcxxabi;
   };
@@ -1317,6 +1319,8 @@ in {
 
   pywebpush = callPackage ../development/python-modules/pywebpush { };
 
+  pywick = callPackage ../development/python-modules/pywick { };
+
   pyxml = disabledIf isPy3k (callPackage ../development/python-modules/pyxml{ });
 
   pyvcd = callPackage ../development/python-modules/pyvcd { };
@@ -1347,6 +1351,8 @@ in {
 
   salmon-mail = callPackage ../development/python-modules/salmon-mail { };
 
+  sanic-auth = callPackage ../development/python-modules/sanic-auth { };
+
   seekpath = callPackage ../development/python-modules/seekpath { };
 
   selectors2 = callPackage ../development/python-modules/selectors2 { };
@@ -2439,6 +2445,8 @@ in {
 
   digital-ocean = callPackage ../development/python-modules/digitalocean { };
 
+  digi-xbee = callPackage ../development/python-modules/digi-xbee { };
+
   leather = callPackage ../development/python-modules/leather { };
 
   libais = callPackage ../development/python-modules/libais { };
@@ -2514,6 +2522,8 @@ in {
 
   discogs_client = callPackage ../development/python-modules/discogs_client { };
 
+  dlx = callPackage ../development/python-modules/dlx { };
+
   dmenu-python = callPackage ../development/python-modules/dmenu { };
 
   dnslib = callPackage ../development/python-modules/dnslib { };
@@ -2628,6 +2638,8 @@ in {
 
   fb-re2 = callPackage ../development/python-modules/fb-re2 { };
 
+  ffmpeg-python = callPackage ../development/python-modules/ffmpeg-python { };
+
   filetype = callPackage ../development/python-modules/filetype { };
 
   flammkuchen = callPackage ../development/python-modules/flammkuchen { };
@@ -2744,6 +2756,8 @@ in {
 
   hbmqtt = callPackage ../development/python-modules/hbmqtt { };
 
+  hickle = callPackage ../development/python-modules/hickle { };
+
   hiro = callPackage ../development/python-modules/hiro {};
 
   hglib = callPackage ../development/python-modules/hglib {};
@@ -2917,6 +2931,8 @@ in {
 
   mlrose = callPackage ../development/python-modules/mlrose { };
 
+  mlflow = callPackage ../development/python-modules/mlflow { };
+
   mt-940 = callPackage ../development/python-modules/mt-940 { };
 
   mwlib = callPackage ../development/python-modules/mwlib { };
@@ -3763,6 +3779,8 @@ in {
 
   google_resumable_media = callPackage ../development/python-modules/google_resumable_media { };
 
+  gorilla = callPackage ../development/python-modules/gorilla { };
+
   gpgme = toPythonModule (pkgs.gpgme.override {
     pythonSupport = true;
     inherit python;
@@ -3861,6 +3879,8 @@ in {
 
   ifaddr = callPackage ../development/python-modules/ifaddr { };
 
+  imagecorruptions = callPackage ../development/python-modules/imagecorruptions { };
+
   imageio = callPackage ../development/python-modules/imageio { };
 
   imageio-ffmpeg = callPackage ../development/python-modules/imageio-ffmpeg { };
@@ -4152,6 +4172,8 @@ in {
 
   marshmallow-enum = callPackage ../development/python-modules/marshmallow-enum { };
 
+  marshmallow-polyfield = callPackage ../development/python-modules/marshmallow-polyfield { };
+
   marshmallow-sqlalchemy = callPackage ../development/python-modules/marshmallow-sqlalchemy { };
 
   manuel = callPackage ../development/python-modules/manuel { };
@@ -4969,6 +4991,8 @@ in {
 
   pyshp = callPackage ../development/python-modules/pyshp { };
 
+  pysnow = callPackage ../development/python-modules/pysnow { };
+
   pysmbc = callPackage ../development/python-modules/pysmbc {
     inherit (pkgs) pkgconfig;
   };
@@ -5244,6 +5268,8 @@ in {
   # alias for an older package which did not support Python 3
   Quandl = callPackage ../development/python-modules/quandl { };
 
+  querystring_parser = callPackage ../development/python-modules/querystring-parser { };
+
   qscintilla-qt4 = callPackage ../development/python-modules/qscintilla { };
 
   qscintilla-qt5 = pkgs.libsForQt5.callPackage ../development/python-modules/qscintilla-qt5 {
@@ -5760,6 +5786,8 @@ in {
 
   xxhash = callPackage ../development/python-modules/xxhash { };
 
+  ydiff = callPackage ../development/python-modules/ydiff { };
+
   yoda = toPythonModule (pkgs.yoda.override {
     inherit python;
   });
@@ -6754,6 +6782,8 @@ in {
     inherit (pkgs) zstd pkgconfig;
   };
 
+  zstandard = callPackage ../development/python-modules/zstandard { };
+
   zxcvbn = callPackage ../development/python-modules/zxcvbn { };
 
   incremental = callPackage ../development/python-modules/incremental { };
@@ -6944,6 +6974,8 @@ in {
 
   srptools = callPackage ../development/python-modules/srptools { };
 
+  srp = callPackage ../development/python-modules/srp { };
+
   curve25519-donna = callPackage ../development/python-modules/curve25519-donna { };
 
   pyatv = callPackage ../development/python-modules/pyatv { };