Merge master into staging-next

21 files changed, 294 insertions, 180 deletions

diff --git a/pkgs/development/tools/ansible-lint/default.nix b/pkgs/development/tools/ansible-lint/default.nix
index 16d2782b7340..c460662f4f88 100644
--- a/pkgs/development/tools/ansible-lint/default.nix
+++ b/pkgs/development/tools/ansible-lint/default.nix
@@ -2,13 +2,13 @@
 
 pythonPackages.buildPythonPackage rec {
   pname = "ansible-lint";
-  version = "3.4.20";
+  version = "3.4.23";
 
   src = fetchFromGitHub {
     owner = "willthames";
     repo = "ansible-lint";
     rev = "v${version}";
-    sha256 = "0wgczijrg5azn2f63hjbkas1w0f5hbvxnk3ia53w69mybk0gy044";
+    sha256 = "0cnfgxh5m7alzm811hc95jigbca5vc1pf8fjazmsakmhdjyfbpb7";
   };
 
   propagatedBuildInputs = with pythonPackages; [ pyyaml six ] ++ [ ansible ];
diff --git a/pkgs/development/tools/bazel-watcher/default.nix b/pkgs/development/tools/bazel-watcher/default.nix
new file mode 100644
index 000000000000..bedb55ec3742
--- /dev/null
+++ b/pkgs/development/tools/bazel-watcher/default.nix
@@ -0,0 +1,80 @@
+{ buildBazelPackage
+, cacert
+, fetchFromGitHub
+, fetchpatch
+, git
+, go
+, stdenv
+}:
+
+buildBazelPackage rec {
+  name = "bazel-watcher-${version}";
+  version = "0.5.0";
+
+  src = fetchFromGitHub {
+    owner = "bazelbuild";
+    repo = "bazel-watcher";
+    rev = "v${version}";
+    sha256 = "1sis723hwax4dg0c28x20yj0hjli66q1ykcvjirgy57znz4iwlq9";
+  };
+
+  patches = [
+    (fetchpatch {
+      url = "https://github.com/bazelbuild/bazel-watcher/commit/4d5928eee3dd5843a1b55136d914b78fef7f25d0.patch";
+      sha256 = "0gxzcdqgifrmvznfy0p5nd11b39n2pwxcvpmhc6hxf85mwlxz7dg";
+    })
+
+    ./update-gazelle-fix-ssl.patch
+  ];
+
+  nativeBuildInputs = [ go git ];
+
+  bazelTarget = "//ibazel";
+
+  fetchAttrs = {
+    preBuild = ''
+      patchShebangs .
+
+      # tell rules_go to use the Go binary found in the PATH
+      sed -e 's:go_register_toolchains():go_register_toolchains(go_version = "host"):g' -i WORKSPACE
+
+      # tell rules_go to invoke GIT with custom CAINFO path
+      export GIT_SSL_CAINFO="${cacert}/etc/ssl/certs/ca-bundle.crt"
+    '';
+
+    preInstall = ''
+      # Remove the go_sdk (it's just a copy of the go derivation) and all
+      # references to it from the marker files. Bazel does not need to download
+      # this sdk because we have patched the WORKSPACE file to point to the one
+      # currently present in PATH. Without removing the go_sdk from the marker
+      # file, the hash of it will change anytime the Go derivation changes and
+      # that would lead to impurities in the marker files which would result in
+      # a different sha256 for the fetch phase.
+      rm -rf $bazelOut/external/{go_sdk,\@go_sdk.marker}
+      sed -e '/^FILE:@go_sdk.*/d' -i $bazelOut/external/\@*.marker
+    '';
+
+    sha256 = "1iyjvibvlwg980p7nizr6x5v31dyp4a344f0xn839x393583k59d";
+  };
+
+  buildAttrs = {
+    preBuild = ''
+      patchShebangs .
+
+      # tell rules_go to use the Go binary found in the PATH
+      sed -e 's:go_register_toolchains():go_register_toolchains(go_version = "host"):g' -i WORKSPACE
+    '';
+
+    installPhase = ''
+      install -Dm755 bazel-bin/ibazel/*_pure_stripped/ibazel $out/bin/ibazel
+    '';
+  };
+
+  meta = with stdenv.lib; {
+    homepage = https://github.com/bazelbuild/bazel-watcher;
+    description = "Tools for building Bazel targets when source files change.";
+    license = licenses.asl20;
+    maintainers = with maintainers; [ kalbasit ];
+    platforms = platforms.all;
+  };
+}
diff --git a/pkgs/development/tools/bazel-watcher/update-gazelle-fix-ssl.patch b/pkgs/development/tools/bazel-watcher/update-gazelle-fix-ssl.patch
new file mode 100644
index 000000000000..4cf69e9d1723
--- /dev/null
+++ b/pkgs/development/tools/bazel-watcher/update-gazelle-fix-ssl.patch
@@ -0,0 +1,19 @@
+diff --git a/WORKSPACE b/WORKSPACE
+index 4011d9b..d085ae8 100644
+--- a/WORKSPACE
++++ b/WORKSPACE
+@@ -52,11 +52,9 @@ http_archive(
+
+ http_archive(
+     name = "bazel_gazelle",
+-    sha256 = "c0a5739d12c6d05b6c1ad56f2200cb0b57c5a70e03ebd2f7b87ce88cabf09c7b",
+-    urls = [
+-        "https://mirror.bazel.build/github.com/bazelbuild/bazel-gazelle/releases/download/0.14.0/bazel-gazelle-0.14.0.tar.gz",
+-        "https://github.com/bazelbuild/bazel-gazelle/releases/download/0.14.0/bazel-gazelle-0.14.0.tar.gz",
+-    ],
++    sha256 = "0600ea2daf98170211dc561fd348a8a9328c91eb6df66a381eaaf0bcd122e80b",
++    strip_prefix = "bazel-gazelle-b34f46af2f31ee0470e7364352c2376bcc10d079",
++    url = "https://github.com/bazelbuild/bazel-gazelle/archive/b34f46af2f31ee0470e7364352c2376bcc10d079.tar.gz",
+ )
+
+ load("@io_bazel_rules_go//go:def.bzl", "go_register_toolchains", "go_rules_dependencies")
diff --git a/pkgs/development/tools/build-managers/buildbot/worker.nix b/pkgs/development/tools/build-managers/buildbot/worker.nix
index cffcb594a0d2..4fabad9d3701 100644
--- a/pkgs/development/tools/build-managers/buildbot/worker.nix
+++ b/pkgs/development/tools/build-managers/buildbot/worker.nix
@@ -3,11 +3,11 @@
 pythonPackages.buildPythonApplication (rec {
   name = "${pname}-${version}";
   pname = "buildbot-worker";
-  version = "1.3.0";
+  version = "1.4.0";
 
   src = pythonPackages.fetchPypi {
     inherit pname version;
-    sha256 = "1l9iqyqn9yln6ln6dhfkngzx92a61v1cf5ahqj4ax663i02yq7fh";
+    sha256 = "12zvf4c39b6s4g1f2w407q8kkw602m88rc1ggi4w9pkw3bwbxrgy";
   };
 
   buildInputs = with pythonPackages; [ setuptoolsTrial mock ];
diff --git a/pkgs/development/tools/build-managers/sbt-extras/default.nix b/pkgs/development/tools/build-managers/sbt-extras/default.nix
index d501a7953841..5cb5bbacee95 100644
--- a/pkgs/development/tools/build-managers/sbt-extras/default.nix
+++ b/pkgs/development/tools/build-managers/sbt-extras/default.nix
@@ -1,8 +1,8 @@
 { stdenv, fetchFromGitHub, which, curl, makeWrapper, jdk }:
 
 let
-  rev = "3c8fcadc3376edfd8e4b08b35f174935bf97bbac";
-  version = stdenv.lib.strings.substring 0 7 rev;
+  rev = "1d8ee2c0a75374afa1cb687f450aeb095180882b";
+  version = "2018-09-27";
 in
 stdenv.mkDerivation {
   name = "sbt-extras-${version}";
@@ -12,7 +12,7 @@ stdenv.mkDerivation {
     owner = "paulp";
     repo = "sbt-extras";
     inherit rev;
-    sha256 = "0r79w4kgdrsdnm4ma9rmb9k115rvidpaha7sr9rsxv68jpagwgrj";
+    sha256 = "1a6k1lcpd9sknzyx6niq56z1b90mz7br7y13yk98w06r7fmfchw5";
   };
 
   dontBuild = true;
diff --git a/pkgs/development/tools/build-managers/sbt/default.nix b/pkgs/development/tools/build-managers/sbt/default.nix
index bbbbbf462ec8..60f342db12aa 100644
--- a/pkgs/development/tools/build-managers/sbt/default.nix
+++ b/pkgs/development/tools/build-managers/sbt/default.nix
@@ -2,7 +2,7 @@
 
 stdenv.mkDerivation rec {
   name = "sbt-${version}";
-  version = "1.2.3";
+  version = "1.2.4";
 
   src = fetchurl {
     urls = [
@@ -10,7 +10,7 @@ stdenv.mkDerivation rec {
       "https://github.com/sbt/sbt/releases/download/v${version}/sbt-${version}.tgz"
       "https://cocl.us/sbt-${version}.tgz"
     ];
-    sha256 = "1szyp9hgrvr3r5rhr98cn5mkhca1mr0qfs6cd8fiihm6hzjzn0nm";
+    sha256 = "06zv1mm4rhl0h6qa7m4w5lbwjcyqp43r183q36q9zlyip965mnrn";
   };
 
   patchPhase = ''
diff --git a/pkgs/development/tools/database/dbmate/default.nix b/pkgs/development/tools/database/dbmate/default.nix
new file mode 100644
index 000000000000..14fcc3f8607c
--- /dev/null
+++ b/pkgs/development/tools/database/dbmate/default.nix
@@ -0,0 +1,25 @@
+{ stdenv, lib, buildGoPackage, fetchFromGitHub }:
+
+buildGoPackage rec {
+  name = "dbmate-${version}";
+  version = "1.4.1";
+
+  goPackagePath = "github.com/amacneil/dbmate";
+
+  src = fetchFromGitHub {
+    owner = "amacneil";
+    repo = "dbmate";
+    rev = "v${version}";
+    sha256 = "0s3l51kmpsaikixq1yxryrgglzk4kfrjagcpf1i2bkq4wc5gyv5d";
+  };
+
+  goDeps = ./deps.nix;
+
+  meta = with stdenv.lib; {
+    description = "Database migration tool";
+    homepage = https://dbmate.readthedocs.io;
+    license = licenses.mit;
+    maintainers = [ maintainers.manveru ];
+    platforms = platforms.unix;
+  };
+}
diff --git a/pkgs/development/tools/database/dbmate/deps.nix b/pkgs/development/tools/database/dbmate/deps.nix
new file mode 100644
index 000000000000..97bfc10b20af
--- /dev/null
+++ b/pkgs/development/tools/database/dbmate/deps.nix
@@ -0,0 +1,84 @@
+# file generated from Gopkg.lock using dep2nix (https://github.com/nixcloud/dep2nix)
+[
+  {
+    goPackagePath  = "github.com/davecgh/go-spew";
+    fetch = {
+      type = "git";
+      url = "https://github.com/davecgh/go-spew";
+      rev =  "346938d642f2ec3594ed81d874461961cd0faa76";
+      sha256 = "0d4jfmak5p6lb7n2r6yvf5p1zcw0l8j74kn55ghvr7zr7b7axm6c";
+    };
+  }
+  {
+    goPackagePath  = "github.com/go-sql-driver/mysql";
+    fetch = {
+      type = "git";
+      url = "https://github.com/go-sql-driver/mysql";
+      rev =  "2cc627ac8defc45d65066ae98f898166f580f9a4";
+      sha256 = "0n589y9ak2m6glaqmqlggrfv2hghy5i2906r123svf92ci4r9sww";
+    };
+  }
+  {
+    goPackagePath  = "github.com/joho/godotenv";
+    fetch = {
+      type = "git";
+      url = "https://github.com/joho/godotenv";
+      rev =  "a79fa1e548e2c689c241d10173efd51e5d689d5b";
+      sha256 = "09610yqswxa02905mp9cqgsm50r76saagzddc55sqav4ad04j6qm";
+    };
+  }
+  {
+    goPackagePath  = "github.com/lib/pq";
+    fetch = {
+      type = "git";
+      url = "https://github.com/lib/pq";
+      rev =  "19c8e9ad00952ce0c64489b60e8df88bb16dd514";
+      sha256 = "0lm79ja5id7phf1jwf1vs987azaxis0q7qr69px0r6gqiva0q0vz";
+    };
+  }
+  {
+    goPackagePath  = "github.com/mattn/go-sqlite3";
+    fetch = {
+      type = "git";
+      url = "https://github.com/mattn/go-sqlite3";
+      rev =  "6c771bb9887719704b210e87e934f08be014bdb1";
+      sha256 = "0x6s7hy3ab3qw6dfl81y7ighjva5j4rrzvqhppf1qwz5alpfmpdm";
+    };
+  }
+  {
+    goPackagePath  = "github.com/pmezard/go-difflib";
+    fetch = {
+      type = "git";
+      url = "https://github.com/pmezard/go-difflib";
+      rev =  "792786c7400a136282c1664665ae0a8db921c6c2";
+      sha256 = "0c1cn55m4rypmscgf0rrb88pn58j3ysvc2d0432dp3c6fqg6cnzw";
+    };
+  }
+  {
+    goPackagePath  = "github.com/stretchr/testify";
+    fetch = {
+      type = "git";
+      url = "https://github.com/stretchr/testify";
+      rev =  "b91bfb9ebec76498946beb6af7c0230c7cc7ba6c";
+      sha256 = "178xyfgsbs40jq406aqj0r67ik1b81gdc28z45nbcw6hfhz82rvl";
+    };
+  }
+  {
+    goPackagePath  = "github.com/urfave/cli";
+    fetch = {
+      type = "git";
+      url = "https://github.com/urfave/cli";
+      rev =  "cfb38830724cc34fedffe9a2a29fb54fa9169cd1";
+      sha256 = "0y6f4sbzkiiwrxbl15biivj8c7qwxnvm3zl2dd3mw4wzg4x10ygj";
+    };
+  }
+  {
+    goPackagePath  = "google.golang.org/appengine";
+    fetch = {
+      type = "git";
+      url = "https://github.com/golang/appengine";
+      rev =  "150dc57a1b433e64154302bdc40b6bb8aefa313a";
+      sha256 = "0w3knznv39k8bm85ri62f83czcrxknql7dv6p9hk1a5jx3xljgxq";
+    };
+  }
+]
diff --git a/pkgs/development/tools/database/pgcli/default.nix b/pkgs/development/tools/database/pgcli/default.nix
index 2926946cd45a..bc1c2515bfa7 100644
--- a/pkgs/development/tools/database/pgcli/default.nix
+++ b/pkgs/development/tools/database/pgcli/default.nix
@@ -2,13 +2,13 @@
 
 pythonPackages.buildPythonApplication rec {
   name = "pgcli-${version}";
-  version = "1.10.3";
+  version = "1.11.0";
 
   src = fetchFromGitHub {
     owner = "dbcli";
     repo = "pgcli";
     rev = "v${version}";
-    sha256 = "1qcbv2w036l0gc0li3jpa6amxzqmhv8d1q6wv4pfh0wvl17hqv9r";
+    sha256 = "01qcvl0iwabinq3sb4340js8v3sbwkbxi64sg4xy76wj8xr6kgsk";
   };
 
   buildInputs = with pythonPackages; [ pytest mock ];
diff --git a/pkgs/development/tools/java/visualvm/default.nix b/pkgs/development/tools/java/visualvm/default.nix
index 2a707e35b918..3cec26435050 100644
--- a/pkgs/development/tools/java/visualvm/default.nix
+++ b/pkgs/development/tools/java/visualvm/default.nix
@@ -1,12 +1,12 @@
 { stdenv, fetchzip, lib, makeWrapper, makeDesktopItem, jdk, gtk2, gawk }:
 
 stdenv.mkDerivation rec {
-  version = "1.4.1";
+  version = "1.4.2";
   name = "visualvm-${version}";
 
   src = fetchzip {
     url = "https://github.com/visualvm/visualvm.src/releases/download/${version}/visualvm_${builtins.replaceStrings ["."] [""]  version}.zip";
-    sha256 = "10ciyggf8mcy3c53shpl03fxqwsa2ilgw3xdgqhb1ah151k18p78";
+    sha256 = "0kic1rqxaj2rpnflj1wklsy3gjz50gcb0wak4qi3hjkz5rv6gp1y";
   };
 
   desktopItem = makeDesktopItem {
diff --git a/pkgs/development/tools/kubectx/default.nix b/pkgs/development/tools/kubectx/default.nix
index 5cf0badf668e..959bb8698682 100644
--- a/pkgs/development/tools/kubectx/default.nix
+++ b/pkgs/development/tools/kubectx/default.nix
@@ -4,13 +4,13 @@ with lib;
 
 stdenv.mkDerivation rec {
   name = "kubectx";
-  version = "0.5.1";
+  version = "0.6.1";
 
   src = fetchFromGitHub {
     owner = "ahmetb";
     repo = "${name}";
     rev = "v${version}";
-    sha256 = "1bmmaj5fffx4hy55l6x4vl5gr9rp2yhg4vs5b9sya9rjvdkamdx5";
+    sha256 = "1507g8sm73mqfsxl3fabmj37pk9l4jddsdi4qlpf0ixhk3z1lfkg";
   };
 
   buildInputs = [ makeWrapper ];
@@ -20,9 +20,24 @@ stdenv.mkDerivation rec {
 
   installPhase = ''
     mkdir -p $out/bin
+    mkdir -p $out/share/zsh/site-functions
+    mkdir -p $out/share/bash-completion/completions
+    mkdir -p $out/share/fish/vendor_completions.d
+
     cp kubectx $out/bin
     cp kubens $out/bin
 
+    # Provide ZSH completions
+    cp completion/kubectx.zsh $out/share/zsh/site-functions/_kubectx
+    cp completion/kubens.zsh $out/share/zsh/site-functions/_kubens
+
+    # Provide BASH completions
+    cp completion/kubectx.bash $out/share/bash-completion/completions/kubectx
+    cp completion/kubens.bash $out/share/bash-completion/completions/kubens
+
+    # Provide FISH completions
+    cp completion/*.fish $out/share/fish/vendor_completions.d/
+
     for f in $out/bin/*; do
       wrapProgram $f --prefix PATH : ${makeBinPath [ kubectl ]}
     done
diff --git a/pkgs/development/tools/misc/blackmagic/default.nix b/pkgs/development/tools/misc/blackmagic/default.nix
index 2d7225ee03ed..2974c653acdd 100644
--- a/pkgs/development/tools/misc/blackmagic/default.nix
+++ b/pkgs/development/tools/misc/blackmagic/default.nix
@@ -12,8 +12,8 @@ stdenv.mkDerivation rec {
   src = fetchFromGitHub {
     owner = "blacksphere";
     repo = "blackmagic";
-    rev = "d3a8f27fdbf952194e8fc5ce9b2fc9bcef7c545c";
-    sha256 = "0c3l7cfqag3g7zrfn4mmikkx7076hb1r856ybhhdh0f6zji2j6jx";
+    rev = "29386aee140e5e99a958727358f60980418b4c88";
+    sha256 = "05x19y80mixk6blpnfpfngy5d41jpjvdqgjzkmhv1qc03bhyhc82";
     fetchSubmodules = true;
   };
 
diff --git a/pkgs/development/tools/misc/fswatch/default.nix b/pkgs/development/tools/misc/fswatch/default.nix
index a1f33fdfc9e7..0e8e0116a8b0 100644
--- a/pkgs/development/tools/misc/fswatch/default.nix
+++ b/pkgs/development/tools/misc/fswatch/default.nix
@@ -10,13 +10,13 @@
 
 stdenv.mkDerivation rec {
   name = "fswatch-${version}";
-  version = "1.12.0";
+  version = "1.13.0";
 
   src = fetchFromGitHub {
     owner = "emcrisostomo";
     repo = "fswatch";
     rev = version;
-    sha256 = "16f3g6s79gs1sp2ra3cka4c5mf5b557cx697bwcdfgj6r19ni5j7";
+    sha256 = "18nrp2l1rzrhnw4p6d9r6jaxkkvxkiahvahgws2j00q623v0f3ij";
   };
 
   nativeBuildInputs = [ autoreconfHook ];
diff --git a/pkgs/development/tools/misc/lsof/default.nix b/pkgs/development/tools/misc/lsof/default.nix
index 0a5a3c487810..63003f338eb9 100644
--- a/pkgs/development/tools/misc/lsof/default.nix
+++ b/pkgs/development/tools/misc/lsof/default.nix
@@ -28,7 +28,7 @@ stdenv.mkDerivation rec {
 
   unpackPhase = "tar xvjf $src; cd lsof_*; tar xvf lsof_*.tar; sourceRoot=$( echo lsof_*/); ";
 
-  patches = stdenv.lib.optional stdenv.isDarwin ./darwin-dfile.patch;
+  patches = [ ./no-build-info.patch ] ++ stdenv.lib.optional stdenv.isDarwin ./darwin-dfile.patch;
 
   postPatch = stdenv.lib.optionalString stdenv.hostPlatform.isMusl ''
     substituteInPlace dialects/linux/dlsof.h --replace "defined(__UCLIBC__)" 1
diff --git a/pkgs/development/tools/misc/lsof/no-build-info.patch b/pkgs/development/tools/misc/lsof/no-build-info.patch
new file mode 100644
index 000000000000..cf785e248f2a
--- /dev/null
+++ b/pkgs/development/tools/misc/lsof/no-build-info.patch
@@ -0,0 +1,43 @@
+diff -ru -x '*~' lsof_4.91_src-orig/usage.c lsof_4.91_src/usage.c
+--- lsof_4.91_src-orig/usage.c	2018-02-14 15:20:32.000000000 +0100
++++ lsof_4.91_src/usage.c	2018-10-08 21:57:45.718560869 +0200
+@@ -930,26 +930,6 @@
+ 		(void) fprintf(stderr, "    configuration info: %s\n", cp);
+ #endif	/* defined(LSOF_CINFO) */
+ 
+-	    if ((cp = isnullstr(LSOF_CCDATE)))
+-		(void) fprintf(stderr, "    constructed: %s\n", cp);
+-	    cp = isnullstr(LSOF_HOST);
+-	    if (!(cp1 = isnullstr(LSOF_LOGNAME)))
+-		cp1 = isnullstr(LSOF_USER);
+-	    if (cp || cp1) {
+-		if (cp && cp1)
+-		    cp2 = "by and on";
+-		else if (cp)
+-		    cp2 = "on";
+-		else
+-		    cp2 = "by";
+-		(void) fprintf(stderr, "    constructed %s: %s%s%s\n",
+-		    cp2,
+-		    cp1 ? cp1 : "",
+-		    (cp && cp1) ? "@" : "",
+-		    cp  ? cp  : ""
+-		);
+-	    }
+-
+ #if	defined(LSOF_BLDCMT)
+ 	    if ((cp = isnullstr(LSOF_BLDCMT)))
+ 		(void) fprintf(stderr, "    builder's comment: %s\n", cp);
+@@ -959,12 +939,8 @@
+ 		(void) fprintf(stderr, "    compiler: %s\n", cp);
+ 	    if ((cp = isnullstr(LSOF_CCV)))
+ 		(void) fprintf(stderr, "    compiler version: %s\n", cp);
+-	    if ((cp = isnullstr(LSOF_CCFLAGS)))
+-		(void) fprintf(stderr, "    compiler flags: %s\n", cp);
+ 	    if ((cp = isnullstr(LSOF_LDFLAGS)))
+ 		(void) fprintf(stderr, "    loader flags: %s\n", cp);
+-	    if ((cp = isnullstr(LSOF_SYSINFO)))
+-		(void) fprintf(stderr, "    system info: %s\n", cp);
+ 	    (void) report_SECURITY("    ", ".\n");
+ 	    (void) report_WARNDEVACCESS("    ", "are", ".\n");
+ 	    (void) report_HASKERNIDCK("    K", "is");
diff --git a/pkgs/development/tools/misc/xxdiff/tip.nix b/pkgs/development/tools/misc/xxdiff/tip.nix
index 844758c0f065..1424b8fe1974 100644
--- a/pkgs/development/tools/misc/xxdiff/tip.nix
+++ b/pkgs/development/tools/misc/xxdiff/tip.nix
@@ -1,7 +1,7 @@
 { stdenv, fetchFromBitbucket, qtbase, flex, bison, docutils }:
 
 stdenv.mkDerivation rec {
-  name = "xxdiff-4.0.1.20170623";
+  name = "xxdiff-5.0b1";
 
   src = fetchFromBitbucket {
     owner = "blais";
diff --git a/pkgs/development/tools/packer/default.nix b/pkgs/development/tools/packer/default.nix
index 851c6f01b20f..25ec443be42b 100644
--- a/pkgs/development/tools/packer/default.nix
+++ b/pkgs/development/tools/packer/default.nix
@@ -1,7 +1,7 @@
 { stdenv, buildGoPackage, fetchFromGitHub }:
 buildGoPackage rec {
   name = "packer-${version}";
-  version = "1.2.5";
+  version = "1.3.1";
 
   goPackagePath = "github.com/hashicorp/packer";
 
@@ -11,7 +11,7 @@ buildGoPackage rec {
     owner = "hashicorp";
     repo = "packer";
     rev = "v${version}";
-    sha256 = "0wbf0iqfqphwy2snspf34j16ar4ghk0f1zsw8n8vj8gviiivlr7p";
+    sha256 = "0aif4ilzfv8qyqk4mn525r38xw2w34ryknzd2vrg6mcjcarm8myq";
   };
 
   meta = with stdenv.lib; {
diff --git a/pkgs/development/tools/vagrant/Gemfile b/pkgs/development/tools/vagrant/Gemfile
deleted file mode 100644
index d32951f1c054..000000000000
--- a/pkgs/development/tools/vagrant/Gemfile
+++ /dev/null
@@ -1,2 +0,0 @@
-source "https://rubygems.org"
-gem 'vagrant'
diff --git a/pkgs/development/tools/vagrant/Gemfile.lock b/pkgs/development/tools/vagrant/Gemfile.lock
deleted file mode 100644
index 2a1515fd1438..000000000000
--- a/pkgs/development/tools/vagrant/Gemfile.lock
+++ /dev/null
@@ -1,149 +0,0 @@
-GIT
-  remote: https://github.com/hashicorp/vagrant-spec.git
-  revision: 9413ab298407114528766efefd1fb1ff24589636
-  specs:
-    vagrant-spec (0.0.1)
-      childprocess (~> 0.6.0)
-      log4r (~> 1.1.9)
-      rspec (~> 3.5.0)
-      thor (~> 0.18.1)
-
-PATH
-  remote: .
-  specs:
-    vagrant (2.1.2)
-      childprocess (~> 0.6.0)
-      erubis (~> 2.7.0)
-      hashicorp-checkpoint (~> 0.1.5)
-      i18n (>= 0.6.0, <= 0.8.0)
-      listen (~> 3.1.5)
-      log4r (~> 1.1.9, < 1.1.11)
-      net-scp (~> 1.2.0)
-      net-sftp (~> 2.1)
-      net-ssh (~> 4.2.0)
-      rb-kqueue (~> 0.2.0)
-      rest-client (>= 1.6.0, < 3.0)
-      ruby_dep (<= 1.3.1)
-      wdm (~> 0.1.0)
-      winrm (~> 2.1)
-      winrm-elevated (~> 1.1)
-      winrm-fs (~> 1.0)
-
-GEM
-  remote: https://rubygems.org/
-  specs:
-    addressable (2.5.2)
-      public_suffix (>= 2.0.2, < 4.0)
-    builder (3.2.3)
-    childprocess (0.6.3)
-      ffi (~> 1.0, >= 1.0.11)
-    crack (0.4.3)
-      safe_yaml (~> 1.0.0)
-    diff-lcs (1.3)
-    domain_name (0.5.20180417)
-      unf (>= 0.0.5, < 1.0.0)
-    erubis (2.7.0)
-    fake_ftp (0.1.1)
-    ffi (1.9.23)
-    gssapi (1.2.0)
-      ffi (>= 1.0.1)
-    gyoku (1.3.1)
-      builder (>= 2.1.2)
-    hashdiff (0.3.7)
-    hashicorp-checkpoint (0.1.5)
-    http-cookie (1.0.3)
-      domain_name (~> 0.5)
-    httpclient (2.8.3)
-    i18n (0.8.0)
-    listen (3.1.5)
-      rb-fsevent (~> 0.9, >= 0.9.4)
-      rb-inotify (~> 0.9, >= 0.9.7)
-      ruby_dep (~> 1.2)
-    little-plugger (1.1.4)
-    log4r (1.1.10)
-    logging (2.2.2)
-      little-plugger (~> 1.1)
-      multi_json (~> 1.10)
-    mime-types (3.1)
-      mime-types-data (~> 3.2015)
-    mime-types-data (3.2016.0521)
-    multi_json (1.13.1)
-    net-scp (1.2.1)
-      net-ssh (>= 2.6.5)
-    net-sftp (2.1.2)
-      net-ssh (>= 2.6.5)
-    net-ssh (4.2.0)
-    netrc (0.11.0)
-    nori (2.6.0)
-    public_suffix (3.0.1)
-    rake (12.0.0)
-    rb-fsevent (0.10.3)
-    rb-inotify (0.9.10)
-      ffi (>= 0.5.0, < 2)
-    rb-kqueue (0.2.5)
-      ffi (>= 0.5.0)
-    rest-client (2.0.2)
-      http-cookie (>= 1.0.2, < 2.0)
-      mime-types (>= 1.16, < 4.0)
-      netrc (~> 0.8)
-    rspec (3.5.0)
-      rspec-core (~> 3.5.0)
-      rspec-expectations (~> 3.5.0)
-      rspec-mocks (~> 3.5.0)
-    rspec-core (3.5.4)
-      rspec-support (~> 3.5.0)
-    rspec-expectations (3.5.0)
-      diff-lcs (>= 1.2.0, < 2.0)
-      rspec-support (~> 3.5.0)
-    rspec-its (1.2.0)
-      rspec-core (>= 3.0.0)
-      rspec-expectations (>= 3.0.0)
-    rspec-mocks (3.5.0)
-      diff-lcs (>= 1.2.0, < 2.0)
-      rspec-support (~> 3.5.0)
-    rspec-support (3.5.0)
-    ruby_dep (1.3.1)
-    rubyntlm (0.6.2)
-    rubyzip (1.2.1)
-    safe_yaml (1.0.4)
-    thor (0.18.1)
-    unf (0.1.4)
-      unf_ext
-    unf_ext (0.0.7.5)
-    wdm (0.1.1)
-    webmock (2.3.2)
-      addressable (>= 2.3.6)
-      crack (>= 0.3.2)
-      hashdiff
-    winrm (2.2.3)
-      builder (>= 2.1.2)
-      erubis (~> 2.7)
-      gssapi (~> 1.2)
-      gyoku (~> 1.0)
-      httpclient (~> 2.2, >= 2.2.0.2)
-      logging (>= 1.6.1, < 3.0)
-      nori (~> 2.0)
-      rubyntlm (~> 0.6.0, >= 0.6.1)
-    winrm-elevated (1.1.0)
-      winrm (~> 2.0)
-      winrm-fs (~> 1.0)
-    winrm-fs (1.2.0)
-      erubis (~> 2.7)
-      logging (>= 1.6.1, < 3.0)
-      rubyzip (~> 1.1)
-      winrm (~> 2.0)
-
-PLATFORMS
-  ruby
-
-DEPENDENCIES
-  fake_ftp (~> 0.1.1)
-  rake (~> 12.0.0)
-  rspec (~> 3.5.0)
-  rspec-its (~> 1.2.0)
-  vagrant!
-  vagrant-spec!
-  webmock (~> 2.3.1)
-
-BUNDLED WITH
-   1.16.2
diff --git a/pkgs/development/tools/vagrant/default.nix b/pkgs/development/tools/vagrant/default.nix
index f247a20b1b27..ecc1a2d00946 100644
--- a/pkgs/development/tools/vagrant/default.nix
+++ b/pkgs/development/tools/vagrant/default.nix
@@ -1,10 +1,8 @@
-{ lib, fetchurl, buildRubyGem, bundlerEnv, ruby, libarchive }:
+{ lib, fetchurl, buildRubyGem, bundlerEnv, ruby, libarchive, writeText }:
 
 let
   # NOTE: bumping the version and updating the hash is insufficient;
-  # you must copy a fresh Gemfile.lock from the vagrant source,
-  # and use bundix to generate a new gemset.nix.
-  # Do not change the existing Gemfile.
+  # you must use bundix to generate a new gemset.nix in the Vagrant source.
   version = "2.1.2";
   url = "https://github.com/hashicorp/vagrant/archive/v${version}.tar.gz";
   sha256 = "0fb90v43d30whhyjlgb9mmy93ccbpr01pz97kp5hrg3wfd7703b1";
@@ -15,7 +13,8 @@ let
     inherit version;
 
     inherit ruby;
-    gemdir = ./.;
+    gemfile = writeText "Gemfile" "";
+    lockfile = writeText "Gemfile.lock" "";
     gemset = lib.recursiveUpdate (import ./gemset.nix) {
       vagrant = {
         source = {
diff --git a/pkgs/development/tools/valadoc/default.nix b/pkgs/development/tools/valadoc/default.nix
index 6515e220f3d5..fba5fe91ed86 100644
--- a/pkgs/development/tools/valadoc/default.nix
+++ b/pkgs/development/tools/valadoc/default.nix
@@ -4,7 +4,7 @@ stdenv.mkDerivation rec {
   name = "valadoc-${version}";
 
   src = fetchurl {
-    url = "mirror://gnome/sources/valadoc/${gnome3.versionBranch version}/${name}.tar.xz";
+    url = "mirror://gnome/sources/valadoc/${stdenv.lib.versions.majorMinor version}/${name}.tar.xz";
     sha256 = "07501k2j9c016bd7rfr6xzaxdplq7j9sd18b5ixbqdbipvn6whnv";
   };