about summary refs log tree commit diff
path: root/pkgs/applications/science
diff options
context:
space:
mode:
authorMaximilian Bosch <maximilian@mbosch.me>2020-02-01 17:42:03 +0100
committerMaximilian Bosch <maximilian@mbosch.me>2020-02-01 17:42:03 +0100
commitea8ae88f0447b0cf7aa8a07844cac78e001f5622 (patch)
tree3c9e5c92d6f3fd72d2a622ee39ddd52306010f28 /pkgs/applications/science
parent1bb18d9e8dbe537225c8d6ae8476aae3c40df368 (diff)
parent5ff1a53a32b332e3b1a1e295e12e184c65833d13 (diff)
downloadnixlib-ea8ae88f0447b0cf7aa8a07844cac78e001f5622.tar
nixlib-ea8ae88f0447b0cf7aa8a07844cac78e001f5622.tar.gz
nixlib-ea8ae88f0447b0cf7aa8a07844cac78e001f5622.tar.bz2
nixlib-ea8ae88f0447b0cf7aa8a07844cac78e001f5622.tar.lz
nixlib-ea8ae88f0447b0cf7aa8a07844cac78e001f5622.tar.xz
nixlib-ea8ae88f0447b0cf7aa8a07844cac78e001f5622.tar.zst
nixlib-ea8ae88f0447b0cf7aa8a07844cac78e001f5622.zip
Merge branch 'staging' into glibc230
Diffstat (limited to 'pkgs/applications/science')
-rw-r--r--pkgs/applications/science/biology/seaview/default.nix4
-rw-r--r--pkgs/applications/science/electronics/verilator/default.nix8
-rw-r--r--pkgs/applications/science/logic/ott/default.nix4
-rw-r--r--pkgs/applications/science/physics/sherpa/default.nix4
4 files changed, 8 insertions, 12 deletions
diff --git a/pkgs/applications/science/biology/seaview/default.nix b/pkgs/applications/science/biology/seaview/default.nix
index 69dece88c276..fea8da41d70a 100644
--- a/pkgs/applications/science/biology/seaview/default.nix
+++ b/pkgs/applications/science/biology/seaview/default.nix
@@ -1,12 +1,12 @@
 { stdenv, fetchurl, coreutils, fltk, libjpeg }:
 
 stdenv.mkDerivation rec {
-  version = "4.7";
+  version = "5.0";
   pname = "seaview";
 
   src = fetchurl {
     url = "ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_${version}.tar.gz";
-    sha256 = "0fhyq7dcn0izhwcfin9ajsr7kmmsqm9f1np1rmhzg4digfwqb29n";
+    sha256 = "0gzjqf5mm91pa1drwxvz229bv6l995npdggngszh6z6j4pfh8j7c";
   };
 
   buildInputs = [ fltk libjpeg ];
diff --git a/pkgs/applications/science/electronics/verilator/default.nix b/pkgs/applications/science/electronics/verilator/default.nix
index c940fd4ac342..c47d055a32ba 100644
--- a/pkgs/applications/science/electronics/verilator/default.nix
+++ b/pkgs/applications/science/electronics/verilator/default.nix
@@ -2,20 +2,16 @@
 
 stdenv.mkDerivation rec {
   pname = "verilator";
-  version = "4.024";
+  version = "4.026";
 
   src = fetchurl {
     url    = "https://www.veripool.org/ftp/${pname}-${version}.tgz";
-    sha256 = "0nmjazdv36ksjp8ys48c1grlzkd6yx3zhcd9y165d4sjm3m1pffs";
+    sha256 = "1b4zxwgd780yxql11r2333qhl7ki5jxh9jxlyhv9xqml9aq8myva";
   };
 
   enableParallelBuilding = true;
   buildInputs = [ perl flex bison ];
 
-  postInstall = ''
-    sed -i -e '3a\#!/usr/bin/env perl' -e '1,3d' $out/bin/{verilator,verilator_coverage,verilator_profcfunc}
-  '';
-
   meta = {
     description = "Fast and robust (System)Verilog simulator/compiler";
     homepage    = "https://www.veripool.org/wiki/verilator";
diff --git a/pkgs/applications/science/logic/ott/default.nix b/pkgs/applications/science/logic/ott/default.nix
index 854a62a5538d..fa7c3dd5e95f 100644
--- a/pkgs/applications/science/logic/ott/default.nix
+++ b/pkgs/applications/science/logic/ott/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "ott";
-  version = "0.29";
+  version = "0.30";
 
   src = fetchFromGitHub {
     owner = "ott-lang";
     repo = "ott";
     rev = version;
-    sha256 = "0saznk2mjbhp3j57imy2p2j0938026bw5m5gqbj59vcvk1rwwl22";
+    sha256 = "16bxfnm30z94x36vr8vs6zd6fj55vnb7aypjl6hf7clk42040brc";
   };
 
   nativeBuildInputs = [ pkgconfig ];
diff --git a/pkgs/applications/science/physics/sherpa/default.nix b/pkgs/applications/science/physics/sherpa/default.nix
index 045a77cea27f..04115399c1a7 100644
--- a/pkgs/applications/science/physics/sherpa/default.nix
+++ b/pkgs/applications/science/physics/sherpa/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "sherpa";
-  version = "2.2.6";
+  version = "2.2.8";
 
   src = fetchurl {
     url = "https://www.hepforge.org/archive/sherpa/SHERPA-MC-${version}.tar.gz";
-    sha256 = "1cagkkz1pjl0pdf85w1qkwhx0afi3kxm1vnmfavq1zqhss7fc57i";
+    sha256 = "1al1imdrknvbcy8k113xysc14lln4msbv281bf0kx7p73wz59mv3";
   };
 
   buildInputs = [ gfortran sqlite lhapdf rivet ];