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| author | Tuomas Tynkkynen <tuomas@tuxera.com> | 2018-01-27 21:53:16 +0200 |
|---|---|---|
| committer | Tuomas Tynkkynen <tuomas@tuxera.com> | 2018-01-27 21:53:16 +0200 |
| commit | c3a658deb1954165f12d92dfe36204d4c5cc2ec8 (patch) | |
| tree | f115d121018d6ee13fcf9e566acb1cd1daf7d5df /pkgs/applications/science | |
| parent | f968949c75d77bf1344883dec65b5a5323c24d6d (diff) | |
| parent | 355a6ca18971b75219fa6bcf20902a2ac2d9b3e3 (diff) | |
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Merge remote-tracking branch 'upstream/master' into staging
Diffstat (limited to 'pkgs/applications/science')
| -rw-r--r-- | pkgs/applications/science/biology/star/default.nix | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/star/default.nix b/pkgs/applications/science/biology/star/default.nix new file mode 100644 index 000000000000..1642739140d6 --- /dev/null +++ b/pkgs/applications/science/biology/star/default.nix @@ -0,0 +1,34 @@ +{ stdenv, fetchFromGitHub, zlib }: + +stdenv.mkDerivation rec { + name = "star-${version}"; + version = "2.5.3a"; + + src = fetchFromGitHub { + repo = "STAR"; + owner = "alexdobin"; + rev = version; + sha256 = "1fd9xl7i1zxgsxn2qf6gz8s42g2djm29qmp6qb35d8nnxh8ns54x"; + }; + + sourceRoot = "source/source"; + + postPatch = "sed 's:/bin/rm:rm:g' -i Makefile"; + + buildInputs = [ zlib ]; + + buildPhase = "make STAR STARlong"; + + installPhase = '' + mkdir -p $out/bin + cp STAR STARlong $out/bin + ''; + + meta = with stdenv.lib; { + description = "Spliced Transcripts Alignment to a Reference"; + homepage = https://github.com/alexdobin/STAR; + license = licenses.gpl3Plus; + platforms = platforms.linux; + maintainers = [ maintainers.arcadio ]; + }; +} |