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| author | Weijia Wang <9713184+wegank@users.noreply.github.com> | 2023-12-12 01:51:59 +0100 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2023-12-12 01:51:59 +0100 |
| commit | 9a67c36f6d276654df0b9afb32e34273f2f81367 (patch) | |
| tree | 3f66e9108827900407ba793edf3bca0e0c713dbe /pkgs/applications/science | |
| parent | f4a98e5a3e007a3bae683a85e50798bb82ef6699 (diff) | |
| parent | 3ce2a25e504a72e727e6bdf845655344e55ee4a6 (diff) | |
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Merge pull request #273382 from wegank/strelka-aarch64
strelka: add aarch64-linux support
Diffstat (limited to 'pkgs/applications/science')
| -rw-r--r-- | pkgs/applications/science/biology/strelka/default.nix | 26 |
1 files changed, 23 insertions, 3 deletions
diff --git a/pkgs/applications/science/biology/strelka/default.nix b/pkgs/applications/science/biology/strelka/default.nix index 9730601e4e7d..ad6c0d9e5a4c 100644 --- a/pkgs/applications/science/biology/strelka/default.nix +++ b/pkgs/applications/science/biology/strelka/default.nix @@ -1,4 +1,4 @@ -{lib, stdenv, fetchFromGitHub, cmake, zlib, python2}: +{lib, stdenv, fetchFromGitHub, fetchpatch, cmake, boost, zlib, python2}: stdenv.mkDerivation rec { pname = "strelka"; @@ -11,8 +11,28 @@ stdenv.mkDerivation rec { sha256 = "1nykbmim1124xh22nrhrsn8xgjb3s2y7akrdapn9sl1gdych4ppf"; }; + patches = [ + # Pull pending fix for gcc-12: + # https://github.com/Illumina/strelka/pull/204 + (fetchpatch { + name = "limits.patch"; + url = "https://github.com/Illumina/strelka/commit/98272cd345c6e4c672e6a5b7721204fcac0502d6.patch"; + hash = "sha256-psBiuN32nvwZ+QX51JQjIdRhEE3k7PfwbkD10ckqvZk="; + }) + ]; + + postPatch = '' + substituteInPlace src/cmake/boost.cmake \ + --replace "1.58.0" "${boost.version}" \ + --replace "Boost_USE_STATIC_LIBS ON" "Boost_USE_STATIC_LIBS OFF" + ''; + nativeBuildInputs = [ cmake ]; - buildInputs = [ zlib python2 ]; + buildInputs = [ boost zlib python2 ]; + + cmakeFlags = [ + "-DCMAKE_CXX_STANDARD=14" + ]; env.NIX_CFLAGS_COMPILE = toString [ "-Wno-error=maybe-uninitialized" @@ -37,7 +57,7 @@ stdenv.mkDerivation rec { license = licenses.gpl3; homepage = "https://github.com/Illumina/strelka"; maintainers = with maintainers; [ jbedo ]; - platforms = [ "x86_64-linux" ]; + platforms = platforms.linux; }; } |