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author | scalavision <scalavision@gmail.com> | 2019-10-31 19:34:05 +0100 |
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committer | Jon <jonringer@users.noreply.github.com> | 2019-11-04 02:42:36 -0800 |
commit | d9b40f6397de11c3d59001fa9a5cec226ee408c1 (patch) | |
tree | 1bb4975dac26caea2c891e6eb93115540555a7ab /pkgs/applications/science/biology | |
parent | f3799926800dcb7f53f738e98cffafde6da3a2d9 (diff) | |
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deeptools: init at 3.3.1
Diffstat (limited to 'pkgs/applications/science/biology')
-rw-r--r-- | pkgs/applications/science/biology/deeptools/default.nix | 42 |
1 files changed, 42 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/deeptools/default.nix b/pkgs/applications/science/biology/deeptools/default.nix new file mode 100644 index 000000000000..78a6f483337f --- /dev/null +++ b/pkgs/applications/science/biology/deeptools/default.nix @@ -0,0 +1,42 @@ +{ lib +, python +}: +with python.pkgs; +buildPythonApplication rec { + pname = "deepTools"; + version = "3.3.1"; + + src = fetchPypi { + inherit pname version; + sha256 = "08p36p9ncj5s8qf1r7h83x4rnmi63l3yk6mnr3wgpg2qgvwl0hji"; + }; + + propagatedBuildInputs = [ + numpy + numpydoc + scipy + py2bit + pybigwig + pysam + matplotlib + plotly + deeptoolsintervals + ]; + + checkInputs = [ pytest ]; + + meta = with lib; { + homepage = "https://deeptools.readthedocs.io/en/develop"; + description = "Tools for exploring deep DNA sequencing data"; + longDescription = '' + deepTools contains useful modules to process the mapped reads data for multiple + quality checks, creating normalized coverage files in standard bedGraph and bigWig + file formats, that allow comparison between different files (for example, treatment and control). + Finally, using such normalized and standardized files, deepTools can create many + publication-ready visualizations to identify enrichments and for functional + annotations of the genome. + ''; + license = licenses.gpl3; + maintainers = with maintainers; [ scalavision ]; + }; +} |