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author | Franz Pletz <fpletz@fnordicwalking.de> | 2019-11-05 01:07:22 +0100 |
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committer | Franz Pletz <fpletz@fnordicwalking.de> | 2019-11-05 01:07:22 +0100 |
commit | 8dca8b9ccb05e7abe6b769485a4d224987c15c06 (patch) | |
tree | 80f8e212628d458ecc6d9e9af22661813eed8aa7 /pkgs/applications/science/biology | |
parent | 1ba64dad7c7b29a03ace672b2ff1a01343e853fe (diff) | |
parent | 22906321fbc0d38372d7ae2657adb2597fc384c1 (diff) | |
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Merge remote-tracking branch 'origin/master' into gcc-9
Diffstat (limited to 'pkgs/applications/science/biology')
-rw-r--r-- | pkgs/applications/science/biology/deeptools/default.nix | 42 |
1 files changed, 42 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/deeptools/default.nix b/pkgs/applications/science/biology/deeptools/default.nix new file mode 100644 index 000000000000..78a6f483337f --- /dev/null +++ b/pkgs/applications/science/biology/deeptools/default.nix @@ -0,0 +1,42 @@ +{ lib +, python +}: +with python.pkgs; +buildPythonApplication rec { + pname = "deepTools"; + version = "3.3.1"; + + src = fetchPypi { + inherit pname version; + sha256 = "08p36p9ncj5s8qf1r7h83x4rnmi63l3yk6mnr3wgpg2qgvwl0hji"; + }; + + propagatedBuildInputs = [ + numpy + numpydoc + scipy + py2bit + pybigwig + pysam + matplotlib + plotly + deeptoolsintervals + ]; + + checkInputs = [ pytest ]; + + meta = with lib; { + homepage = "https://deeptools.readthedocs.io/en/develop"; + description = "Tools for exploring deep DNA sequencing data"; + longDescription = '' + deepTools contains useful modules to process the mapped reads data for multiple + quality checks, creating normalized coverage files in standard bedGraph and bigWig + file formats, that allow comparison between different files (for example, treatment and control). + Finally, using such normalized and standardized files, deepTools can create many + publication-ready visualizations to identify enrichments and for functional + annotations of the genome. + ''; + license = licenses.gpl3; + maintainers = with maintainers; [ scalavision ]; + }; +} |