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author | Bruno Bzeznik <Bruno.Bzeznik@imag.fr> | 2019-03-27 15:20:32 +0100 |
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committer | Bruno Bzeznik <Bruno.Bzeznik@imag.fr> | 2019-04-19 14:43:40 +0200 |
commit | 90b4796c607962bed2ffd8dbe003def02a8c0aa9 (patch) | |
tree | db2177a23cf3b02a05f16d6604f27e199a730da8 /pkgs/applications/science/biology/sumatools | |
parent | d73f16d6767e99675682f822dac3017bf9af1e83 (diff) | |
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sumatools: init at 1.0.34
Diffstat (limited to 'pkgs/applications/science/biology/sumatools')
-rw-r--r-- | pkgs/applications/science/biology/sumatools/default.nix | 65 |
1 files changed, 65 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/sumatools/default.nix b/pkgs/applications/science/biology/sumatools/default.nix new file mode 100644 index 000000000000..6f7227d7a3e9 --- /dev/null +++ b/pkgs/applications/science/biology/sumatools/default.nix @@ -0,0 +1,65 @@ +{ gccStdenv, fetchFromGitLab, zlib }: + +let + stdenv = gccStdenv; + meta = with stdenv.lib; { + description = "Fast and exact comparison and clustering of sequences"; + homepage = https://metabarcoding.org/sumatra; + maintainers = [ maintainers.bzizou ]; + platforms = platforms.unix; + }; + +in rec { + + # Suma library + sumalibs = stdenv.mkDerivation rec { + version = "1.0.34"; + pname = "sumalibs"; + src = fetchFromGitLab { + domain = "git.metabarcoding.org"; + owner = "obitools"; + repo = pname; + rev = "sumalib_v${version}"; + sha256 = "0hwkrxzfz7m5wdjvmrhkjg8kis378iaqr5n4nhdhkwwhn8x1jn5a"; + }; + makeFlags = "PREFIX=$(out)"; + }; + + # Sumatra + sumatra = stdenv.mkDerivation rec { + version = "1.0.34"; + pname = "sumatra"; + src = fetchFromGitLab { + domain = "git.metabarcoding.org"; + owner = "obitools"; + repo = pname; + rev = "${pname}_v${version}"; + sha256 = "1bbpbdkshdc3xffqnr1qfy8qk64ldsmdc3s8mrcrlx132rgbi5f6"; + }; + buildInputs = [ sumalibs zlib ]; + makeFlags = [ + "LIBSUMA=${sumalibs}/lib/libsuma.a" + "LIBSUMAPATH=-L${sumalibs}" + "PREFIX=$(out)" + ]; + }; + + # Sumaclust + sumaclust = stdenv.mkDerivation rec { + version = "1.0.34"; + pname = "sumaclust"; + src = fetchFromGitLab { + domain = "git.metabarcoding.org"; + owner = "obitools"; + repo = pname; + rev = "${pname}_v${version}"; + sha256 = "0x8yi3k3jxhmv2krp4rcjlj2f9zg0qrk7gx4kpclf9c3yxgsgrds"; + }; + buildInputs = [ sumalibs ]; + makeFlags = [ + "LIBSUMA=${sumalibs}/lib/libsuma.a" + "LIBSUMAPATH=-L${sumalibs}" + "PREFIX=$(out)" + ]; + }; +} |