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| author | Matthew Bauer <mjbauer95@gmail.com> | 2020-03-31 10:47:18 -0400 |
|---|---|---|
| committer | Matthew Bauer <mjbauer95@gmail.com> | 2020-04-17 16:24:09 -0500 |
| commit | 1c8aba83340be3713f68410d1d273a8b15e7e007 (patch) | |
| tree | fdc752744f384be57b6ff3c65495018432bff0ab /pkgs/applications/science/biology/plink-ng | |
| parent | 43873351ffed36b52170571839e26b57c9f15920 (diff) | |
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treewide: use blas and lapack
This makes packages use lapack and blas, which can wrap different BLAS/LAPACK implementations. treewide: cleanup from blas/lapack changes A few issues in the original treewide: - can’t assume blas64 is a bool - unused commented code
Diffstat (limited to 'pkgs/applications/science/biology/plink-ng')
| -rw-r--r-- | pkgs/applications/science/biology/plink-ng/default.nix | 15 |
1 files changed, 10 insertions, 5 deletions
diff --git a/pkgs/applications/science/biology/plink-ng/default.nix b/pkgs/applications/science/biology/plink-ng/default.nix index 13f00c53fe64..0a31ff6ba4fd 100644 --- a/pkgs/applications/science/biology/plink-ng/default.nix +++ b/pkgs/applications/science/biology/plink-ng/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, zlib, openblas, darwin}: +{ stdenv, fetchFromGitHub, zlib, blas, lapack, darwin}: stdenv.mkDerivation rec { pname = "plink-ng"; @@ -11,14 +11,20 @@ stdenv.mkDerivation rec { sha256 = "1zhffjbwpd50dxywccbnv1rxy9njwz73l4awc5j7i28rgj3davcq"; }; - buildInputs = [ zlib ] ++ (if stdenv.isDarwin then [ darwin.apple_sdk.frameworks.Accelerate ] else [ openblas ]) ; + buildInputs = [ zlib ] ++ (if stdenv.isDarwin then [ darwin.apple_sdk.frameworks.Accelerate ] else [ blas lapack ]) ; - buildPhase = '' + preBuild = '' sed -i 's|zlib-1.2.8/zlib.h|zlib.h|g' *.c *.h ${if stdenv.cc.isClang then "sed -i 's|g++|clang++|g' Makefile.std" else ""} - make ZLIB=-lz ${if stdenv.isDarwin then "" else "BLASFLAGS=-lopenblas"} -f Makefile.std + + makeFlagsArray+=( + ZLIB=-lz + BLASFLAGS="-lblas -lcblas -llapack" + ); ''; + makefile = "Makefile.std"; + installPhase = '' mkdir -p $out/bin cp plink $out/bin @@ -31,4 +37,3 @@ stdenv.mkDerivation rec { platforms = stdenv.lib.platforms.linux; }; } - |