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| author | Pjotr Prins <pjotr.public01@thebird.nl> | 2009-02-16 16:38:55 +0000 |
|---|---|---|
| committer | Pjotr Prins <pjotr.public01@thebird.nl> | 2009-02-16 16:38:55 +0000 |
| commit | 387a7a85d6f83ac9a3fbfaeb7bf7645fc56c031f (patch) | |
| tree | 953c30311b74a99c09bd842ee18ad6b189925619 /pkgs/applications/science/biology/ncbi-tools | |
| parent | 1b849c8282f33be180f6719b92c3f5b741e1cd5e (diff) | |
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Updated NCBI tools to latest version
svn path=/nixpkgs/trunk/; revision=14087
Diffstat (limited to 'pkgs/applications/science/biology/ncbi-tools')
| -rw-r--r-- | pkgs/applications/science/biology/ncbi-tools/default.nix | 14 |
1 files changed, 8 insertions, 6 deletions
diff --git a/pkgs/applications/science/biology/ncbi-tools/default.nix b/pkgs/applications/science/biology/ncbi-tools/default.nix index 45460c4b1aa9..e47b1744da7f 100644 --- a/pkgs/applications/science/biology/ncbi-tools/default.nix +++ b/pkgs/applications/science/biology/ncbi-tools/default.nix @@ -1,21 +1,23 @@ {stdenv, fetchurl, cpio}: -# Note: may need the C-libs at ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2008/Mar_17_2008/NCBI_C_Toolkit/ncbi_c--Mar_17_2008.tar.gz (or split out?) +# Note: you may want the older C-libs at ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2008/Mar_17_2008/NCBI_C_Toolkit/ncbi_c--Mar_17_2008.tar.gz stdenv.mkDerivation rec { - name = "ncbi_cxx"; - ncbi_version = "Mar_17_2008"; + name = "ncbi_tools"; + ncbi_version="Dec_31_2008"; src = fetchurl { url = "ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2008/${ncbi_version}/ncbi_cxx--${ncbi_version}.tar.gz"; - sha256 = "0mxbmz6gndallz8l5jdslq6illa3hgf31xi2yb984mqm9in485as"; + sha256 = "1b2v0dcdqn3bysgdkj57sxmd6s0hc9wpnxssviz399g6plhxggbr"; }; configureFlags = "--without-debug --with-bin-release --with-dll --without-static"; + # PIC flag (position independent code for shared libraries) + NIX_CXXFLAGS_COMPILE = if stdenv.system == "x86_64-linux" then "-fPIC" else ""; buildInputs = [cpio]; meta = { - description = ''NCBI Bioinformatics toolbox (incl. blast)''; - longDescription = ''The NCBI Bioinformatics toolsbox, including command-line utilties, libraries and include files. No X11 support (at this point).''; + description = ''NCBI Bioinformatics toolbox (incl. BLAST)''; + longDescription = ''The NCBI Bioinformatics toolsbox, including command-line utilties, libraries and include files. No X11 support''; homepage = http://www.ncbi.nlm.nih.gov/IEB/ToolBox/; license = "GPL"; priority = "5"; # zlib.so gives a conflict with zlib |