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| author | Alyssa Ross <hi@alyssa.is> | 2021-09-13 11:53:06 +0000 |
|---|---|---|
| committer | Alyssa Ross <hi@alyssa.is> | 2021-09-13 17:18:49 +0000 |
| commit | c3e005913d59b8ad64004e60888a71816688af1f (patch) | |
| tree | f65b32f0d16acaa40f2ee82ac736d150de4b6cf5 /nixpkgs/pkgs/development/python-modules/pomegranate | |
| parent | 1c8034da05499ca3d999f57ba1f6b235e7711ee1 (diff) | |
| parent | db88608d8c811a93b74c99cfa1224952afc78200 (diff) | |
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Merge commit 'db88608d8c811a93b74c99cfa1224952afc78200'
Conflicts: nixpkgs/nixos/modules/config/update-users-groups.pl
Diffstat (limited to 'nixpkgs/pkgs/development/python-modules/pomegranate')
| -rw-r--r-- | nixpkgs/pkgs/development/python-modules/pomegranate/default.nix | 6 | ||||
| -rw-r--r-- | nixpkgs/pkgs/development/python-modules/pomegranate/disable-failed-on-nextworkx-2.6.patch | 26 |
2 files changed, 31 insertions, 1 deletions
diff --git a/nixpkgs/pkgs/development/python-modules/pomegranate/default.nix b/nixpkgs/pkgs/development/python-modules/pomegranate/default.nix index 518840d415a9..cb87f352154c 100644 --- a/nixpkgs/pkgs/development/python-modules/pomegranate/default.nix +++ b/nixpkgs/pkgs/development/python-modules/pomegranate/default.nix @@ -31,7 +31,11 @@ buildPythonPackage rec { url = "https://github.com/jmschrei/pomegranate/commit/42d14bebc44ffd4a778b2a6430aa845591b7c3b7.patch"; sha256 = "0f9cx0fj9xkr3hch7jyrn76zjypilh5bqw734caaw6g2m49lvbff"; }) - ]; + ] ++ [ + # Likely an upstream test bug and not a real problem: + # https://github.com/jmschrei/pomegranate/issues/939 + ./disable-failed-on-nextworkx-2.6.patch + ] ; propagatedBuildInputs = [ numpy scipy cython networkx joblib pyyaml ]; diff --git a/nixpkgs/pkgs/development/python-modules/pomegranate/disable-failed-on-nextworkx-2.6.patch b/nixpkgs/pkgs/development/python-modules/pomegranate/disable-failed-on-nextworkx-2.6.patch new file mode 100644 index 000000000000..484ca4f9cbc8 --- /dev/null +++ b/nixpkgs/pkgs/development/python-modules/pomegranate/disable-failed-on-nextworkx-2.6.patch @@ -0,0 +1,26 @@ +Test started failing after upgrading networkx 2.5.1 -> 2.6.2: + https://github.com/jmschrei/pomegranate/issues/939 + +Failures look benigh. +--- a/tests/test_bayesian_network.py ++++ b/tests/test_bayesian_network.py +@@ -1057,7 +1057,8 @@ def test_exact_structure_learning_exclude_edges(): + assert_not_equal(model.structure[-2], (d-1,)) + assert_equal(model.structure[-2], (1,)) + +-def test_exact_dp_structure_learning_exclude_edges(): ++# disabled for https://github.com/jmschrei/pomegranate/issues/939 ++def disabled_exact_dp_structure_learning_exclude_edges(): + for X in datasets: + X = X.copy() + X[:,1] = X[:,-1] +@@ -1139,7 +1140,8 @@ def test_constrained_parents_structure_learning_exclude_edges(): + assert_equal(model.structure[7], (2,)) + assert_equal(model.structure[4], (0,)) + +-def test_constrained_slap_structure_learning_exclude_edges(): ++# disabled for https://github.com/jmschrei/pomegranate/issues/939 ++def disabled_constrained_slap_structure_learning_exclude_edges(): + for X in datasets: + X = X.copy() + X[:,1] = X[:,-1] |