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author | Alyssa Ross <hi@alyssa.is> | 2019-08-22 13:47:37 +0000 |
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committer | Alyssa Ross <hi@alyssa.is> | 2019-08-22 18:22:22 +0000 |
commit | 1b9a13c4689af7e088eb7af5589f8c811282846a (patch) | |
tree | 3ed032953008280fb94ef894c869ff3e2a2f7865 /nixpkgs/pkgs/development/python-modules/cnvkit/default.nix | |
parent | 4999a38db7c5de0ea9f514a12ecd4133cce647f3 (diff) | |
parent | 1412af4b2cfae71d447164097d960d426e9752c0 (diff) | |
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Merge remote-tracking branch 'channels/nixos-unstable'
Diffstat (limited to 'nixpkgs/pkgs/development/python-modules/cnvkit/default.nix')
-rw-r--r-- | nixpkgs/pkgs/development/python-modules/cnvkit/default.nix | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/nixpkgs/pkgs/development/python-modules/cnvkit/default.nix b/nixpkgs/pkgs/development/python-modules/cnvkit/default.nix new file mode 100644 index 000000000000..905b274a0552 --- /dev/null +++ b/nixpkgs/pkgs/development/python-modules/cnvkit/default.nix @@ -0,0 +1,48 @@ +{ lib +, fetchPypi +, rPackages +, rWrapper +, buildPythonPackage +, biopython +, numpy +, scipy +, pandas +, matplotlib +, reportlab +, pysam +, future +, pillow +, pomegranate +, pyfaidx +}: + +buildPythonPackage rec { + pname = "CNVkit"; + version = "0.9.6"; + + src = fetchPypi { + inherit pname version; + sha256 = "1hj8c98s538i0hg5mrz4bw4v07qmcl51rhxq611rj2nglnc9r25y"; + }; + + propagatedBuildInputs = [ + biopython + numpy + scipy + pandas + matplotlib + reportlab + pyfaidx + pysam + future + pillow + pomegranate + ]; + + meta = with lib; { + homepage = "https://cnvkit.readthedocs.io"; + description = "A Python library and command-line software toolkit to infer and visualize copy number from high-throughput DNA sequencing data"; + license = licenses.asl20; + maintainers = [ maintainers.jbedo ]; + }; +} |