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| author | Alyssa Ross <hi@alyssa.is> | 2024-02-13 12:25:07 +0100 |
|---|---|---|
| committer | Alyssa Ross <hi@alyssa.is> | 2024-02-13 12:25:07 +0100 |
| commit | a5e1520e4538e29ecfbd4b168306f890566d7bfd (patch) | |
| tree | 28099c268b5d4b1e33c2b29f0714c45f0b961382 /nixpkgs/pkgs/development/python-modules/biopython | |
| parent | 822f7c15c04567fbdc27020e862ea2b70cfbf8eb (diff) | |
| parent | 3560d1c8269d0091b9aae10731b5e85274b7bbc1 (diff) | |
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Merge branch 'nixos-unstable-small' of https://github.com/NixOS/nixpkgs
Conflicts: nixpkgs/nixos/modules/services/mail/rss2email.nix nixpkgs/pkgs/build-support/go/module.nix
Diffstat (limited to 'nixpkgs/pkgs/development/python-modules/biopython')
| -rw-r--r-- | nixpkgs/pkgs/development/python-modules/biopython/default.nix | 32 |
1 files changed, 25 insertions, 7 deletions
diff --git a/nixpkgs/pkgs/development/python-modules/biopython/default.nix b/nixpkgs/pkgs/development/python-modules/biopython/default.nix index cb27d3231d4f..2ec814f56aef 100644 --- a/nixpkgs/pkgs/development/python-modules/biopython/default.nix +++ b/nixpkgs/pkgs/development/python-modules/biopython/default.nix @@ -1,25 +1,43 @@ { lib , buildPythonPackage , fetchPypi +, pythonOlder +, setuptools , numpy -, isPy3k }: buildPythonPackage rec { pname = "biopython"; - version = "1.82"; - format = "setuptools"; + version = "1.83"; + pyproject = true; + + disabled = pythonOlder "3.9"; src = fetchPypi { inherit pname version; - hash = "sha256-qbENlZroipdEqRxs42AfTIbn7EFnm8k8KfZ5IY9hZ7s="; + hash = "sha256-eOa/t43mMDQDev01/nfLbgqeW2Jwa+z3in2SKxbtg/c="; }; - disabled = !isPy3k; + nativeBuildInputs = [ + setuptools + ]; propagatedBuildInputs = [ numpy ]; - # Checks try to write to $HOME, which does not work with nix - doCheck = false; + + pythonImportsCheck = [ + "Bio" + ]; + + checkPhase = '' + runHook preCheck + + export HOME=$(mktemp -d) + cd Tests + python run_tests.py --offline + + runHook postCheck + ''; + meta = { description = "Python library for bioinformatics"; longDescription = '' |