about summary refs log tree commit diff
path: root/nixpkgs/pkgs/development/libraries/science
diff options
context:
space:
mode:
authorAlyssa Ross <hi@alyssa.is>2023-08-08 16:04:42 +0000
committerAlyssa Ross <hi@alyssa.is>2023-08-13 06:35:37 +0000
commit12aaa58dac35800b5b7d77f81cf2a87c21ee55da (patch)
treebe0add9e5c22a85d20b5d78206aa74f956eb2a1b /nixpkgs/pkgs/development/libraries/science
parent45892a5591202f75a1c2f1ca7c62a92c7566e3c5 (diff)
parent5a8e9243812ba528000995b294292d3b5e120947 (diff)
downloadnixlib-12aaa58dac35800b5b7d77f81cf2a87c21ee55da.tar
nixlib-12aaa58dac35800b5b7d77f81cf2a87c21ee55da.tar.gz
nixlib-12aaa58dac35800b5b7d77f81cf2a87c21ee55da.tar.bz2
nixlib-12aaa58dac35800b5b7d77f81cf2a87c21ee55da.tar.lz
nixlib-12aaa58dac35800b5b7d77f81cf2a87c21ee55da.tar.xz
nixlib-12aaa58dac35800b5b7d77f81cf2a87c21ee55da.tar.zst
nixlib-12aaa58dac35800b5b7d77f81cf2a87c21ee55da.zip
Merge branch 'nixos-unstable' of https://github.com/NixOS/nixpkgs
Conflicts:
	nixpkgs/pkgs/applications/window-managers/sway/default.nix
	nixpkgs/pkgs/build-support/go/module.nix
	nixpkgs/pkgs/build-support/rust/build-rust-package/default.nix
	nixpkgs/pkgs/development/libraries/mesa/default.nix
	nixpkgs/pkgs/servers/dict/dictd-db.nix

Link: https://gitlab.freedesktop.org/xkeyboard-config/xkeyboard-config/-/issues/391
Diffstat (limited to 'nixpkgs/pkgs/development/libraries/science')
-rw-r--r--nixpkgs/pkgs/development/libraries/science/astronomy/cfitsio/default.nix30
-rw-r--r--nixpkgs/pkgs/development/libraries/science/astronomy/indilib/default.nix19
-rw-r--r--nixpkgs/pkgs/development/libraries/science/astronomy/indilib/indi-3rdparty.nix18
-rw-r--r--nixpkgs/pkgs/development/libraries/science/astronomy/indilib/indi-firmware.nix5
-rw-r--r--nixpkgs/pkgs/development/libraries/science/astronomy/indilib/indi-full.nix19
-rw-r--r--nixpkgs/pkgs/development/libraries/science/astronomy/libxisf/0001-Fix-pkg-config-paths.patch23
-rw-r--r--nixpkgs/pkgs/development/libraries/science/astronomy/libxisf/default.nix8
-rw-r--r--nixpkgs/pkgs/development/libraries/science/astronomy/wcslib/default.nix4
-rw-r--r--nixpkgs/pkgs/development/libraries/science/biology/bpp-core/default.nix2
-rw-r--r--nixpkgs/pkgs/development/libraries/science/biology/bpp-phyl/default.nix1
-rw-r--r--nixpkgs/pkgs/development/libraries/science/biology/bpp-popgen/default.nix1
-rw-r--r--nixpkgs/pkgs/development/libraries/science/biology/bpp-seq/default.nix1
-rw-r--r--nixpkgs/pkgs/development/libraries/science/chemistry/openmm/default.nix3
-rw-r--r--nixpkgs/pkgs/development/libraries/science/chemistry/simple-dftd3/default.nix4
-rw-r--r--nixpkgs/pkgs/development/libraries/science/electronics/coloquinte/default.nix38
-rw-r--r--nixpkgs/pkgs/development/libraries/science/math/clblast/default.nix4
-rw-r--r--nixpkgs/pkgs/development/libraries/science/math/cudnn/generic.nix1
-rw-r--r--nixpkgs/pkgs/development/libraries/science/math/dbcsr/default.nix4
-rw-r--r--nixpkgs/pkgs/development/libraries/science/math/faiss/default.nix2
-rw-r--r--nixpkgs/pkgs/development/libraries/science/math/lrs/default.nix15
-rw-r--r--nixpkgs/pkgs/development/libraries/science/math/magma/generic.nix40
-rw-r--r--nixpkgs/pkgs/development/libraries/science/math/mongoose/default.nix9
-rw-r--r--nixpkgs/pkgs/development/libraries/science/math/petsc/default.nix4
-rw-r--r--nixpkgs/pkgs/development/libraries/science/math/suitesparse/4.4.nix3
-rw-r--r--nixpkgs/pkgs/development/libraries/science/math/suitesparse/default.nix3
-rw-r--r--nixpkgs/pkgs/development/libraries/science/math/tensorflow-lite/default.nix239
-rw-r--r--nixpkgs/pkgs/development/libraries/science/math/tiny-cuda-nn/default.nix274
-rw-r--r--nixpkgs/pkgs/development/libraries/science/networking/ns-3/default.nix145
28 files changed, 464 insertions, 455 deletions
diff --git a/nixpkgs/pkgs/development/libraries/science/astronomy/cfitsio/default.nix b/nixpkgs/pkgs/development/libraries/science/astronomy/cfitsio/default.nix
index 8a6b72f52130..f35ff4c5ce58 100644
--- a/nixpkgs/pkgs/development/libraries/science/astronomy/cfitsio/default.nix
+++ b/nixpkgs/pkgs/development/libraries/science/astronomy/cfitsio/default.nix
@@ -1,15 +1,21 @@
-{ stdenv, lib, fetchurl, bzip2, zlib }:
-
-stdenv.mkDerivation rec {
+{ stdenv
+, lib
+, fetchurl
+, bzip2
+, curl
+, zlib
+}:
+
+stdenv.mkDerivation (finalAttrs: {
   pname = "cfitsio";
-  version = "4.2.0";
+  version = "4.3.0";
 
   src = fetchurl {
-    url = "https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/cfitsio-${version}.tar.gz";
-    sha256 = "sha256-66U9Gz9uNFYyuwmnt1LsfO09Y+xRU6hIOA84gMXWGIk=";
+    url = "https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/cfitsio-${finalAttrs.version}.tar.gz";
+    hash = "sha256-/a3AHQnPn1QlOALF7IfrEN5RzkEwQRQVrojDCUBiG4s=";
   };
 
-  buildInputs = [ bzip2 zlib ];
+  buildInputs = [ bzip2 curl zlib ];
 
   patches = [ ./darwin-rpath-universal.patch ];
 
@@ -22,7 +28,7 @@ stdenv.mkDerivation rec {
   postPatch = '' sed -e '/^install:/s/libcfitsio.a //' -e 's@/bin/@@g' -i Makefile.in
    '';
 
-  meta = with lib; {
+  meta = {
     homepage = "https://heasarc.gsfc.nasa.gov/fitsio/";
     description = "Library for reading and writing FITS data files";
     longDescription =
@@ -35,8 +41,8 @@ stdenv.mkDerivation rec {
          FITS files.
       '';
     changelog = "https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/docs/changes.txt";
-    license = licenses.mit;
-    maintainers = with maintainers; [ xbreak hjones2199 ];
-    platforms = with platforms; linux ++ darwin;
+    license = lib.licenses.mit;
+    maintainers = with lib.maintainers; [ xbreak hjones2199 ];
+    platforms = lib.platforms.linux ++ lib.platforms.darwin;
   };
-}
+})
diff --git a/nixpkgs/pkgs/development/libraries/science/astronomy/indilib/default.nix b/nixpkgs/pkgs/development/libraries/science/astronomy/indilib/default.nix
index cf722af9cbe1..7090e15dc3d7 100644
--- a/nixpkgs/pkgs/development/libraries/science/astronomy/indilib/default.nix
+++ b/nixpkgs/pkgs/development/libraries/science/astronomy/indilib/default.nix
@@ -12,17 +12,18 @@
 , libjpeg
 , gsl
 , fftw
+, gtest
 }:
 
 stdenv.mkDerivation rec {
   pname = "indilib";
-  version = "1.9.8";
+  version = "2.0.2";
 
   src = fetchFromGitHub {
     owner = "indilib";
     repo = "indi";
     rev = "v${version}";
-    sha256 = "sha256-+KFuZgM/Bl6Oezq3WXjWCHefc1wvR3wOKXejmT0pw1U=";
+    hash = "sha256-GoEvWzGT3Ckv9Syif6Z2kAlnvg/Kt5I8SpGFG9kFTJo=";
   };
 
   nativeBuildInputs = [
@@ -45,16 +46,24 @@ stdenv.mkDerivation rec {
   cmakeFlags = [
     "-DCMAKE_INSTALL_LIBDIR=lib"
     "-DUDEVRULES_INSTALL_DIR=lib/udev/rules.d"
+  ] ++ lib.optional doCheck [
+    "-DINDI_BUILD_UNITTESTS=ON"
+    "-DINDI_BUILD_INTEGTESTS=ON"
   ];
 
+  checkInputs = [ gtest ];
+
+  doCheck = true;
+
+  # Socket address collisions between tests
+  enableParallelChecking = false;
+
   meta = with lib; {
     homepage = "https://www.indilib.org/";
     description = "Implementation of the INDI protocol for POSIX operating systems";
     changelog = "https://github.com/indilib/indi/releases/tag/v${version}";
     license = licenses.lgpl2Plus;
-    maintainers = with maintainers; [ hjones2199 ];
+    maintainers = with maintainers; [ hjones2199 sheepforce ];
     platforms = platforms.unix;
-    # error: use of undeclared identifier 'MSG_NOSIGNAL'
-    broken = stdenv.isDarwin && stdenv.isx86_64;
   };
 }
diff --git a/nixpkgs/pkgs/development/libraries/science/astronomy/indilib/indi-3rdparty.nix b/nixpkgs/pkgs/development/libraries/science/astronomy/indilib/indi-3rdparty.nix
index 7144a17c18b4..2423a6e20e34 100644
--- a/nixpkgs/pkgs/development/libraries/science/astronomy/indilib/indi-3rdparty.nix
+++ b/nixpkgs/pkgs/development/libraries/science/astronomy/indilib/indi-3rdparty.nix
@@ -17,6 +17,7 @@
 , libdc1394
 , gpsd
 , ffmpeg
+, limesuite
 , version
 , src
 , withFirmware ? false
@@ -33,22 +34,22 @@ stdenv.mkDerivation rec {
   buildInputs = [
     indilib libnova curl cfitsio libusb1 zlib boost gsl gpsd
     libjpeg libgphoto2 libraw libftdi1 libdc1394 ffmpeg fftw
+    limesuite
   ] ++ lib.optionals withFirmware [
     firmware
   ];
 
   postPatch = ''
-    for f in indi-qsi/CMakeLists.txt \
-             indi-dsi/CMakeLists.txt \
-             indi-armadillo-platypus/CMakeLists.txt \
-             indi-orion-ssg3/CMakeLists.txt
-    do
+    for f in $(find . -name "CMakeLists.txt"); do
       substituteInPlace $f \
         --replace "/lib/udev/rules.d" "lib/udev/rules.d" \
         --replace "/etc/udev/rules.d" "lib/udev/rules.d" \
         --replace "/lib/firmware" "lib/firmware"
     done
 
+    substituteInPlace libpktriggercord/CMakeLists.txt \
+      --replace "set (PK_DATADIR /usr/share/pktriggercord)" "set (PK_DATADIR $out/share/pkgtriggercord)"
+
     sed '1i#include <ctime>' -i indi-duino/libfirmata/src/firmata.cpp # gcc12
   '';
 
@@ -57,11 +58,8 @@ stdenv.mkDerivation rec {
     "-DCMAKE_INSTALL_LIBDIR=lib"
     "-DUDEVRULES_INSTALL_DIR=lib/udev/rules.d"
     "-DRULES_INSTALL_DIR=lib/udev/rules.d"
-    # Pentax, Atik, and SX cmakelists are currently broken
-    "-DWITH_PENTAX=off"
-    "-DWITH_ATIK=off"
-    "-DWITH_SX=off"
   ] ++ lib.optionals (!withFirmware) [
+    "-DWITH_ATIK=off"
     "-DWITH_APOGEE=off"
     "-DWITH_DSI=off"
     "-DWITH_QHY=off"
@@ -75,7 +73,7 @@ stdenv.mkDerivation rec {
     description = "Third party drivers for the INDI astronomical software suite";
     changelog = "https://github.com/indilib/indi-3rdparty/releases/tag/v${version}";
     license = licenses.lgpl2Plus;
-    maintainers = with maintainers; [ hjones2199 ];
+    maintainers = with maintainers; [ hjones2199 sheepforce ];
     platforms = platforms.linux;
   };
 }
diff --git a/nixpkgs/pkgs/development/libraries/science/astronomy/indilib/indi-firmware.nix b/nixpkgs/pkgs/development/libraries/science/astronomy/indilib/indi-firmware.nix
index 660433c2dd59..7875051cbf79 100644
--- a/nixpkgs/pkgs/development/libraries/science/astronomy/indilib/indi-firmware.nix
+++ b/nixpkgs/pkgs/development/libraries/science/astronomy/indilib/indi-firmware.nix
@@ -19,6 +19,7 @@
 , ffmpeg
 , version
 , src
+, autoPatchelfHook
 }:
 
 stdenv.mkDerivation rec {
@@ -26,7 +27,7 @@ stdenv.mkDerivation rec {
 
   inherit version src;
 
-  nativeBuildInputs = [ cmake ];
+  nativeBuildInputs = [ cmake autoPatchelfHook ];
 
   buildInputs = [
     indilib libnova curl cfitsio libusb1 zlib boost gsl gpsd
@@ -60,7 +61,7 @@ stdenv.mkDerivation rec {
     description = "Third party firmware for the INDI astronomical software suite";
     changelog = "https://github.com/indilib/indi-3rdparty/releases/tag/v${version}";
     license = licenses.lgpl2Plus;
-    maintainers = with maintainers; [ hjones2199 ];
+    maintainers = with maintainers; [ hjones2199 sheepforce ];
     platforms = platforms.linux;
   };
 }
diff --git a/nixpkgs/pkgs/development/libraries/science/astronomy/indilib/indi-full.nix b/nixpkgs/pkgs/development/libraries/science/astronomy/indilib/indi-full.nix
index fae8b95cb28c..6b110a152ee3 100644
--- a/nixpkgs/pkgs/development/libraries/science/astronomy/indilib/indi-full.nix
+++ b/nixpkgs/pkgs/development/libraries/science/astronomy/indilib/indi-full.nix
@@ -1,30 +1,29 @@
 { stdenv, lib, callPackage, fetchFromGitHub, indilib }:
 
 let
-  indi-version = "1.9.8";
+  inherit (indilib) version;
   indi-3rdparty-src = fetchFromGitHub {
     owner = "indilib";
     repo = "indi-3rdparty";
-    rev = "v${indi-version}";
-    sha256 = "sha256-ZFbMyjMvAWcdsl+1TyX5/v5nY1DqvhZ2ckFBDe8gdQg=";
+    rev = "v${version}";
+    hash = "sha256-xAGSFTOfO9P8JldzY59OnQULzf2Mlx3vWjoP+IDdEFE=";
   };
   indi-firmware = callPackage ./indi-firmware.nix {
-    version = indi-version;
+    inherit version;
     src = indi-3rdparty-src;
   };
   indi-3rdparty = callPackage ./indi-3rdparty.nix {
-    version = indi-version;
+    inherit version;
     src = indi-3rdparty-src;
-    withFirmware = stdenv.isx86_64;
+    withFirmware = stdenv.isx86_64 || stdenv.isAarch64;
     firmware = indi-firmware;
   };
 in
 callPackage ./indi-with-drivers.nix {
   pname = "indi-full";
-  version = indi-version;
+  inherit version;
   extraDrivers = [
     indi-3rdparty
-  ] ++ lib.optionals stdenv.isx86_64 [
-    indi-firmware
-  ];
+  ] ++ lib.optional (stdenv.isx86_64 || stdenv.isAarch64) indi-firmware
+  ;
 }
diff --git a/nixpkgs/pkgs/development/libraries/science/astronomy/libxisf/0001-Fix-pkg-config-paths.patch b/nixpkgs/pkgs/development/libraries/science/astronomy/libxisf/0001-Fix-pkg-config-paths.patch
new file mode 100644
index 000000000000..c26a2bbc8814
--- /dev/null
+++ b/nixpkgs/pkgs/development/libraries/science/astronomy/libxisf/0001-Fix-pkg-config-paths.patch
@@ -0,0 +1,23 @@
+From 0000000000000000000000000000000000000000 Mon Sep 17 00:00:00 2001
+From: Nicolas Benes <nbenes.gh@xandea.de>
+Date: Mon, 22 May 2023 09:25:27 +0200
+Subject: [PATCH] Fix pkg-config paths
+
+
+diff --git a/libxisf.pc.in b/libxisf.pc.in
+index b0b8b53..944b068 100644
+--- a/libxisf.pc.in
++++ b/libxisf.pc.in
+@@ -1,7 +1,7 @@
+ prefix="@CMAKE_INSTALL_PREFIX@"
+ exec_prefix="${prefix}"
+-libdir="${exec_prefix}/@CMAKE_INSTALL_LIBDIR@"
+-includedir="${prefix}/@CMAKE_INSTALL_INCLUDEDIR@"
++libdir="@CMAKE_INSTALL_FULL_LIBDIR@"
++includedir="@CMAKE_INSTALL_FULL_INCLUDEDIR@"
+ 
+ Name: @PROJECT_NAME@
+ Description: @CMAKE_PROJECT_DESCRIPTION@
+-- 
+2.38.5
+
diff --git a/nixpkgs/pkgs/development/libraries/science/astronomy/libxisf/default.nix b/nixpkgs/pkgs/development/libraries/science/astronomy/libxisf/default.nix
index e7e4bc98b0d8..a1fcd4da7b3d 100644
--- a/nixpkgs/pkgs/development/libraries/science/astronomy/libxisf/default.nix
+++ b/nixpkgs/pkgs/development/libraries/science/astronomy/libxisf/default.nix
@@ -10,16 +10,20 @@
 
 stdenv.mkDerivation (finalAttrs: {
   pname = "libxisf";
-  version = "0.2.3";
+  version = "0.2.8";
 
   src = fetchFromGitea {
     domain = "gitea.nouspiro.space";
     owner = "nou";
     repo = "libXISF";
     rev = "v${finalAttrs.version}";
-    hash = "sha256-u5EYnRO2rUV8ofLL9qfACeVvVbWXEXpkqh2Q4OOxpaQ=";
+    hash = "sha256-YB97vMz2+cFRYq8x2Su3Eh952U6kGIVLYV7kDEd5S8g=";
   };
 
+  patches = [
+    ./0001-Fix-pkg-config-paths.patch
+  ];
+
   nativeBuildInputs = [
     cmake
     pkg-config
diff --git a/nixpkgs/pkgs/development/libraries/science/astronomy/wcslib/default.nix b/nixpkgs/pkgs/development/libraries/science/astronomy/wcslib/default.nix
index bea05468cedc..7c648ecba754 100644
--- a/nixpkgs/pkgs/development/libraries/science/astronomy/wcslib/default.nix
+++ b/nixpkgs/pkgs/development/libraries/science/astronomy/wcslib/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "wcslib";
-  version = "7.12";
+  version = "8.1";
 
   src = fetchurl {
     url = "ftp://ftp.atnf.csiro.au/pub/software/wcslib/${pname}-${version}.tar.bz2";
-    sha256 = "sha256-nPjeUOEJqX+gRRHUER6NFL0KRAdxMqz3PmzwAp/pa9Q=";
+    sha256 = "sha256-K/I+b6vRC4rs/6VEMb8lqiJP8BnGCp5naqVlYfm0Ep4=";
   };
 
   nativeBuildInputs = [ flex ];
diff --git a/nixpkgs/pkgs/development/libraries/science/biology/bpp-core/default.nix b/nixpkgs/pkgs/development/libraries/science/biology/bpp-core/default.nix
index 102cae24adb9..953fe50a4b03 100644
--- a/nixpkgs/pkgs/development/libraries/science/biology/bpp-core/default.nix
+++ b/nixpkgs/pkgs/development/libraries/science/biology/bpp-core/default.nix
@@ -23,7 +23,7 @@ stdenv.mkDerivation rec {
   doCheck = !stdenv.isDarwin;
 
   meta = with lib; {
-    homepage = "http://biopp.univ-montp2.fr/wiki/index.php/Main_Page";
+    homepage = "https://github.com/BioPP/bpp-core";
     changelog = "https://github.com/BioPP/bpp-core/blob/master/ChangeLog";
     description = "C++ bioinformatics libraries and tools";
     maintainers = with maintainers; [ bcdarwin ];
diff --git a/nixpkgs/pkgs/development/libraries/science/biology/bpp-phyl/default.nix b/nixpkgs/pkgs/development/libraries/science/biology/bpp-phyl/default.nix
index c11b49aa57eb..0b18dbfcf19a 100644
--- a/nixpkgs/pkgs/development/libraries/science/biology/bpp-phyl/default.nix
+++ b/nixpkgs/pkgs/development/libraries/science/biology/bpp-phyl/default.nix
@@ -23,6 +23,7 @@ stdenv.mkDerivation rec {
   doCheck = !stdenv.isDarwin;
 
   meta = bpp-core.meta // {
+    homepage = "https://github.com/BioPP/bpp-phyl";
     changelog = "https://github.com/BioPP/bpp-phyl/blob/master/ChangeLog";
   };
 }
diff --git a/nixpkgs/pkgs/development/libraries/science/biology/bpp-popgen/default.nix b/nixpkgs/pkgs/development/libraries/science/biology/bpp-popgen/default.nix
index 4b9a62eb762b..2cb89b4bbd38 100644
--- a/nixpkgs/pkgs/development/libraries/science/biology/bpp-popgen/default.nix
+++ b/nixpkgs/pkgs/development/libraries/science/biology/bpp-popgen/default.nix
@@ -26,6 +26,7 @@ stdenv.mkDerivation rec {
   doCheck = !stdenv.isDarwin;
 
   meta = bpp-core.meta // {
+    homepage = "https://github.com/BioPP/bpp-popgen";
     changelog = "https://github.com/BioPP/bpp-popgen/blob/master/ChangeLog";
   };
 }
diff --git a/nixpkgs/pkgs/development/libraries/science/biology/bpp-seq/default.nix b/nixpkgs/pkgs/development/libraries/science/biology/bpp-seq/default.nix
index 7981fb28ac09..2f6fbf9e362c 100644
--- a/nixpkgs/pkgs/development/libraries/science/biology/bpp-seq/default.nix
+++ b/nixpkgs/pkgs/development/libraries/science/biology/bpp-seq/default.nix
@@ -26,6 +26,7 @@ stdenv.mkDerivation rec {
   doCheck = !stdenv.isDarwin;
 
   meta = bpp-core.meta // {
+    homepage = "https://github.com/BioPP/bpp-seq";
     changelog = "https://github.com/BioPP/bpp-seq/blob/master/ChangeLog";
   };
 }
diff --git a/nixpkgs/pkgs/development/libraries/science/chemistry/openmm/default.nix b/nixpkgs/pkgs/development/libraries/science/chemistry/openmm/default.nix
index 2ad84249758a..a7c388339de0 100644
--- a/nixpkgs/pkgs/development/libraries/science/chemistry/openmm/default.nix
+++ b/nixpkgs/pkgs/development/libraries/science/chemistry/openmm/default.nix
@@ -11,7 +11,8 @@
 , enableOpencl ? true
 , opencl-headers
 , ocl-icd
-, enableCuda ? false
+, config
+, enableCuda ? config.cudaSupport
 , cudaPackages
 , addOpenGLRunpath
 }:
diff --git a/nixpkgs/pkgs/development/libraries/science/chemistry/simple-dftd3/default.nix b/nixpkgs/pkgs/development/libraries/science/chemistry/simple-dftd3/default.nix
index 57139f8bcd00..1f5e4b250a91 100644
--- a/nixpkgs/pkgs/development/libraries/science/chemistry/simple-dftd3/default.nix
+++ b/nixpkgs/pkgs/development/libraries/science/chemistry/simple-dftd3/default.nix
@@ -13,13 +13,13 @@ assert !blas.isILP64;
 
 stdenv.mkDerivation rec {
   pname = "simple-dftd3";
-  version = "0.7.0";
+  version = "1.0.0";
 
   src = fetchFromGitHub {
     owner = "dftd3";
     repo = pname;
     rev = "v${version}";
-    hash = "sha256-5OvmMgjD8ujjKHkuw4NT8hEXKh5YPxuBl/Mu6g2/KIA=";
+    hash = "sha256-dfXiKKCGJ69aExSKpVC3Bp//COy256R9PDyxCNmDsfo=";
   };
 
   nativeBuildInputs = [ cmake gfortran ];
diff --git a/nixpkgs/pkgs/development/libraries/science/electronics/coloquinte/default.nix b/nixpkgs/pkgs/development/libraries/science/electronics/coloquinte/default.nix
new file mode 100644
index 000000000000..6946080c100e
--- /dev/null
+++ b/nixpkgs/pkgs/development/libraries/science/electronics/coloquinte/default.nix
@@ -0,0 +1,38 @@
+{ lib
+, stdenv
+, fetchFromGitHub
+, cmake
+, lemon-graph
+, eigen
+, boost
+}:
+
+stdenv.mkDerivation (finalAttrs: {
+  pname = "coloquinte";
+  version = "0.3.1";
+
+  src = fetchFromGitHub {
+    owner = "coloquinte";
+    repo = "PlaceRoute";
+    rev = finalAttrs.version;
+    hash = "sha256-bPDXaNZCNBM0qiu+46cL/zH/41lwqHPqfqTzJaERgVQ=";
+  };
+
+  nativeBuildInputs = [
+    cmake
+  ];
+
+  buildInputs = [
+    lemon-graph
+    eigen
+    boost
+  ];
+
+  meta = {
+    description = "Placement library for electronic circuits";
+    homepage = "https://github.com/Coloquinte/PlaceRoute";
+    license = lib.licenses.mit;
+    platforms = lib.platforms.linux;
+    maintainers = [ lib.maintainers.coloquinte ];
+  };
+})
diff --git a/nixpkgs/pkgs/development/libraries/science/math/clblast/default.nix b/nixpkgs/pkgs/development/libraries/science/math/clblast/default.nix
index 281076caba9f..23d749f1b297 100644
--- a/nixpkgs/pkgs/development/libraries/science/math/clblast/default.nix
+++ b/nixpkgs/pkgs/development/libraries/science/math/clblast/default.nix
@@ -9,13 +9,13 @@
 
 stdenv.mkDerivation rec {
   pname = "clblast";
-  version = "1.6.0";
+  version = "1.6.1";
 
   src = fetchFromGitHub {
     owner = "CNugteren";
     repo = "CLBlast";
     rev = version;
-    hash = "sha256-eRwSfP6p0+9yql7TiXZsExRMcnnBLXXW2hh1JliYU2I=";
+    hash = "sha256-1ddjmoLhFoLi/z2cae0HZidUTySsZQDk1T8MVPTbfi4=";
   };
 
   nativeBuildInputs = [
diff --git a/nixpkgs/pkgs/development/libraries/science/math/cudnn/generic.nix b/nixpkgs/pkgs/development/libraries/science/math/cudnn/generic.nix
index cdfa924b2242..e0a6ffd9d547 100644
--- a/nixpkgs/pkgs/development/libraries/science/math/cudnn/generic.nix
+++ b/nixpkgs/pkgs/development/libraries/science/math/cudnn/generic.nix
@@ -94,6 +94,7 @@ in
     # Without --add-needed autoPatchelf forgets $ORIGIN on cuda>=8.0.5.
     postFixup = strings.optionalString (strings.versionAtLeast versionTriple "8.0.5") ''
       patchelf $out/lib/libcudnn.so --add-needed libcudnn_cnn_infer.so
+      patchelf $out/lib/libcudnn_ops_infer.so --add-needed libcublas.so --add-needed libcublasLt.so
     '';
 
     passthru = {
diff --git a/nixpkgs/pkgs/development/libraries/science/math/dbcsr/default.nix b/nixpkgs/pkgs/development/libraries/science/math/dbcsr/default.nix
index 2175d1343856..5a9d3c5066cc 100644
--- a/nixpkgs/pkgs/development/libraries/science/math/dbcsr/default.nix
+++ b/nixpkgs/pkgs/development/libraries/science/math/dbcsr/default.nix
@@ -15,13 +15,13 @@
 
 stdenv.mkDerivation rec {
   pname = "dbcsr";
-  version = "2.5.0";
+  version = "2.6.0";
 
   src = fetchFromGitHub {
     owner = "cp2k";
     repo = "dbcsr";
     rev = "v${version}";
-    hash = "sha256-GGClK3heGE3zUM0R+u58vRdAK+xWzaqdCHaMIDerHSI=";
+    hash = "sha256-+xSxfrzsxBdb424F/3mIETleEPoETxU0LB0OBJrR7gw=";
   };
 
   postPatch = ''
diff --git a/nixpkgs/pkgs/development/libraries/science/math/faiss/default.nix b/nixpkgs/pkgs/development/libraries/science/math/faiss/default.nix
index d67f31375e7d..21e6cbf858cd 100644
--- a/nixpkgs/pkgs/development/libraries/science/math/faiss/default.nix
+++ b/nixpkgs/pkgs/development/libraries/science/math/faiss/default.nix
@@ -5,7 +5,7 @@
 , stdenv
 , cmake
 , cudaPackages ? { }
-, cudaSupport ? config.cudaSupport or false
+, cudaSupport ? config.cudaSupport
 , nvidia-thrust
 , useThrustSourceBuild ? true
 , pythonSupport ? true
diff --git a/nixpkgs/pkgs/development/libraries/science/math/lrs/default.nix b/nixpkgs/pkgs/development/libraries/science/math/lrs/default.nix
index ae5beb0f09e6..6fa8567355a9 100644
--- a/nixpkgs/pkgs/development/libraries/science/math/lrs/default.nix
+++ b/nixpkgs/pkgs/development/libraries/science/math/lrs/default.nix
@@ -1,6 +1,6 @@
-{lib, stdenv, fetchurl, gmp}:
+{ lib, stdenv, fetchurl, gmp }:
 
-stdenv.mkDerivation rec {
+stdenv.mkDerivation {
   pname = "lrs";
   version = "7.2";
 
@@ -11,14 +11,15 @@ stdenv.mkDerivation rec {
 
   buildInputs = [ gmp ];
 
-  preBuild = ''
-    export makeFlags="$makeFlags prefix=$out";
-  '';
+  makeFlags = [
+    "prefix=${placeholder "out"}"
+    "CC:=$(CC)"
+  ];
 
   meta = {
     description = "Implementation of the reverse search algorithm for vertex enumeration/convex hull problems";
-    license = lib.licenses.gpl2 ;
-    maintainers = [lib.maintainers.raskin];
+    license = lib.licenses.gpl2;
+    maintainers = [ lib.maintainers.raskin ];
     platforms = lib.platforms.linux;
     homepage = "http://cgm.cs.mcgill.ca/~avis/C/lrs.html";
   };
diff --git a/nixpkgs/pkgs/development/libraries/science/math/magma/generic.nix b/nixpkgs/pkgs/development/libraries/science/math/magma/generic.nix
index 49efda96829c..04f263568ce6 100644
--- a/nixpkgs/pkgs/development/libraries/science/math/magma/generic.nix
+++ b/nixpkgs/pkgs/development/libraries/science/math/magma/generic.nix
@@ -28,6 +28,7 @@
 , ninja
 , openmp
 , rocmSupport ? false
+, static ? false
 , stdenv
 , symlinkJoin
 }:
@@ -85,29 +86,6 @@ let
     # "75" -> "750"  Cf. https://bitbucket.org/icl/magma/src/f4ec79e2c13a2347eff8a77a3be6f83bc2daec20/CMakeLists.txt#lines-273
     "${minArch'}0";
 
-  cuda-common-redist = with cudaPackages; [
-    libcublas # cublas_v2.h
-    libcusparse # cusparse.h
-  ];
-
-  # Build-time dependencies
-  cuda-native-redist = symlinkJoin {
-    name = "cuda-native-redist-${cudaVersion}";
-    paths = with cudaPackages; [
-      cuda_cudart # cuda_runtime.h
-      cuda_nvcc
-    ] ++ lists.optionals (strings.versionOlder cudaVersion "11.8") [
-      cuda_nvprof # <cuda_profiler_api.h>
-    ] ++ lists.optionals (strings.versionAtLeast cudaVersion "11.8") [
-      cuda_profiler_api # <cuda_profiler_api.h>
-    ] ++ cuda-common-redist;
-  };
-
-  # Run-time dependencies
-  cuda-redist = symlinkJoin {
-    name = "cuda-redist-${cudaVersion}";
-    paths = cuda-common-redist;
-  };
 in
 
 assert (builtins.match "[^[:space:]]*" gpuTargetString) != null;
@@ -127,16 +105,22 @@ stdenv.mkDerivation {
     ninja
     gfortran
   ] ++ lists.optionals cudaSupport [
-    cuda-native-redist
+    cudaPackages.cuda_nvcc
   ];
 
   buildInputs = [
     libpthreadstubs
     lapack
     blas
-  ] ++ lists.optionals cudaSupport [
-    cuda-redist
-  ] ++ lists.optionals rocmSupport [
+  ] ++ lists.optionals cudaSupport (with cudaPackages; [
+    cuda_cudart
+    libcublas # cublas_v2.h
+    libcusparse # cusparse.h
+  ] ++ lists.optionals (strings.versionOlder cudaVersion "11.8") [
+    cuda_nvprof # <cuda_profiler_api.h>
+  ] ++ lists.optionals (strings.versionAtLeast cudaVersion "11.8") [
+    cuda_profiler_api # <cuda_profiler_api.h>
+  ]) ++ lists.optionals rocmSupport [
     hip
     hipblas
     hipsparse
@@ -145,6 +129,8 @@ stdenv.mkDerivation {
 
   cmakeFlags = [
     "-DGPU_TARGET=${gpuTargetString}"
+  ] ++ lists.optionals static [
+    "-DBUILD_SHARED_LIBS=OFF"
   ] ++ lists.optionals cudaSupport [
     "-DCMAKE_CUDA_ARCHITECTURES=${cudaArchitecturesString}"
     "-DMIN_ARCH=${minArch}" # Disarms magma's asserts
diff --git a/nixpkgs/pkgs/development/libraries/science/math/mongoose/default.nix b/nixpkgs/pkgs/development/libraries/science/math/mongoose/default.nix
index e48658b19b82..691140dbf847 100644
--- a/nixpkgs/pkgs/development/libraries/science/math/mongoose/default.nix
+++ b/nixpkgs/pkgs/development/libraries/science/math/mongoose/default.nix
@@ -1,17 +1,16 @@
 { lib
 , stdenv
 , fetchFromGitHub
-, fetchpatch
 , cmake
 , blas
 }:
 
 let
-  suitesparseVersion = "7.0.1";
+  suitesparseVersion = "7.1.0";
 in
-stdenv.mkDerivation rec {
+stdenv.mkDerivation {
   pname = "mongoose";
-  version = "3.0.4";
+  version = "3.0.5";
 
   outputs = [ "bin" "out" "dev" ];
 
@@ -19,7 +18,7 @@ stdenv.mkDerivation rec {
     owner = "DrTimothyAldenDavis";
     repo = "SuiteSparse";
     rev = "v${suitesparseVersion}";
-    hash = "sha256-EIreweeOx44YDxlnxnJ7l31Ie1jSx6y87VAyEX+4NsQ=";
+    hash = "sha256-UizybioU1J01PLBpu+PfnSzWScGTvMuJN5j9PjuZRwE=";
   };
 
   nativeBuildInputs = [
diff --git a/nixpkgs/pkgs/development/libraries/science/math/petsc/default.nix b/nixpkgs/pkgs/development/libraries/science/math/petsc/default.nix
index 06494a1dddcb..6589fc0b9b64 100644
--- a/nixpkgs/pkgs/development/libraries/science/math/petsc/default.nix
+++ b/nixpkgs/pkgs/development/libraries/science/math/petsc/default.nix
@@ -18,11 +18,11 @@ assert petsc-withp4est -> p4est.mpiSupport;
 
 stdenv.mkDerivation rec {
   pname = "petsc";
-  version = "3.19.1";
+  version = "3.19.2";
 
   src = fetchurl {
     url = "http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-${version}.tar.gz";
-    sha256 = "sha256-dNtgxTyAtI1cOeB7w5qIPsztiLnySl3hfPb0hakD4SA=";
+    sha256 = "sha256-EU82P3ebsWg5slwOcPiwrg2UfVDnL3xs3csRsAEHmxY=";
   };
 
   mpiSupport = !withp4est || p4est.mpiSupport;
diff --git a/nixpkgs/pkgs/development/libraries/science/math/suitesparse/4.4.nix b/nixpkgs/pkgs/development/libraries/science/math/suitesparse/4.4.nix
index 95eeaeb8abf3..cbc24b154656 100644
--- a/nixpkgs/pkgs/development/libraries/science/math/suitesparse/4.4.nix
+++ b/nixpkgs/pkgs/development/libraries/science/math/suitesparse/4.4.nix
@@ -1,5 +1,6 @@
 { lib, stdenv, fetchurl, gfortran, blas, lapack
-, enableCuda ? false, cudatoolkit
+, config
+, enableCuda ? config.cudaSupport, cudatoolkit
 }:
 
 let
diff --git a/nixpkgs/pkgs/development/libraries/science/math/suitesparse/default.nix b/nixpkgs/pkgs/development/libraries/science/math/suitesparse/default.nix
index 51b55592d42e..67dfef186e7d 100644
--- a/nixpkgs/pkgs/development/libraries/science/math/suitesparse/default.nix
+++ b/nixpkgs/pkgs/development/libraries/science/math/suitesparse/default.nix
@@ -6,7 +6,8 @@
 , fixDarwinDylibNames
 , gmp
 , mpfr
-, enableCuda ? false
+, config
+, enableCuda ? config.cudaSupport
 , cudatoolkit
 }:
 
diff --git a/nixpkgs/pkgs/development/libraries/science/math/tensorflow-lite/default.nix b/nixpkgs/pkgs/development/libraries/science/math/tensorflow-lite/default.nix
index 3426b0149ae0..1ac08ce0cd2f 100644
--- a/nixpkgs/pkgs/development/libraries/science/math/tensorflow-lite/default.nix
+++ b/nixpkgs/pkgs/development/libraries/science/math/tensorflow-lite/default.nix
@@ -1,203 +1,104 @@
 { stdenv
 , bash
-, abseil-cpp
+, buildPackages
+, buildBazelPackage
 , fetchFromGitHub
-, fetchFromGitLab
-, fetchpatch
-, fetchurl
-, flatbuffers
 , lib
-, zlib
 }:
 let
-  tflite-eigen = fetchFromGitLab {
-    owner = "libeigen";
-    repo = "eigen";
-    rev = "3d9051ea84a5089b277c88dac456b3b1576bfa7f";
-    sha256 = "1y3f2jvimb5i904f4n37h23cv2pkdlbz8656s0kga1y7c0p50wif";
-  };
-
-  gemmlowp-src = fetchFromGitHub {
-    owner = "google";
-    repo = "gemmlowp";
-    rev = "fda83bdc38b118cc6b56753bd540caa49e570745";
-    sha256 = "1sbp8kmr2azwlvfbzryy1frxi99jhsh1nc93bdbxdf8zdgpv0kxl";
-  };
-
-  neon-2-sse-src = fetchFromGitHub {
-    owner = "intel";
-    repo = "ARM_NEON_2_x86_SSE";
-    rev = "1200fe90bb174a6224a525ee60148671a786a71f";
-    sha256 = "0fhxch711ck809dpq1myxz63jiiwfcnxvj45ww0kg8s0pqpn5kv6";
-  };
-
-  farmhash-src = fetchFromGitHub {
-    owner = "google";
-    repo = "farmhash";
-    rev = "816a4ae622e964763ca0862d9dbd19324a1eaf45";
-    sha256 = "1mqxsljq476n1hb8ilkrpb39yz3ip2hnc7rhzszz4sri8ma7qzp6";
-  };
-
-  fft2d-src = fetchurl {
-    url = "http://www.kurims.kyoto-u.ac.jp/~ooura/fft2d.tgz";
-    sha256 = "ada7e99087c4ed477bfdf11413f2ba8db8a840ba9bbf8ac94f4f3972e2a7cec9";
-  };
-
-  fp16-src = fetchFromGitHub {
-    owner = "Maratyszcza";
-    repo = "FP16";
-    rev = "4dfe081cf6bcd15db339cf2680b9281b8451eeb3";
-    sha256 = "06a8dfl3a29r93nxpp6hpywsajz5d555n3sqd3i6krybb6swnvh7";
-  };
-
-  ruy-src = fetchFromGitHub {
-    owner = "google";
-    repo = "ruy";
-    rev = "23633b37099b614a2f836ef012cafc8087fdb98c";
-    sha256 = "14k9hz6ss8qy8nsajk6lrq25f6qxrldxky31ijw0dpqnfnnswrx4";
-  };
-
-  cpuinfo-src = fetchFromGitHub {
-    owner = "pytorch";
-    repo = "cpuinfo";
-    rev = "5916273f79a21551890fd3d56fc5375a78d1598d";
-    sha256 = "0q6760xdxsg18acdv8vq3yrq7ksr7wsm8zbyan01zf2khnb6fw4x";
+  buildPlatform = stdenv.buildPlatform;
+  hostPlatform = stdenv.hostPlatform;
+  pythonEnv = buildPackages.python3.withPackages (ps: [ ps.numpy ]);
+  bazelDepsSha256ByBuildAndHost = {
+    x86_64-linux = {
+      x86_64-linux = "sha256-61qmnAB80syYhURWYJOiOnoGOtNa1pPkxfznrFScPAo=";
+      aarch64-linux = "sha256-sOIYpp98wJRz3RGvPasyNEJ05W29913Lsm+oi/aq/Ag=";
+    };
+    aarch64-linux = {
+      aarch64-linux = "sha256-MJU4y9Dt9xJWKgw7iKW+9Ur856rMIHeFD5u05s+Q7rQ=";
+    };
   };
+  bazelHostConfigName.aarch64-linux = "elinux_aarch64";
+  bazelDepsSha256ByHost =
+    bazelDepsSha256ByBuildAndHost.${buildPlatform.system} or
+      (throw "unsupported build system ${buildPlatform.system}");
+  bazelDepsSha256 = bazelDepsSha256ByHost.${hostPlatform.system} or
+      (throw "unsupported host system ${hostPlatform.system} with build system ${buildPlatform.system}");
 in
-stdenv.mkDerivation rec {
-  pname = "tensorflow-lite";
-  version = "2.5.0";
+buildBazelPackage rec {
+  name = "tensorflow-lite";
+  version = "2.13.0";
 
   src = fetchFromGitHub {
     owner = "tensorflow";
     repo = "tensorflow";
     rev = "v${version}";
-    sha256 = "1jdw2i1rq06zqd6aabh7bbm0avsg4pygnfmd7gviv0blhih9054l";
+    hash = "sha256-Rq5pAVmxlWBVnph20fkAwbfy+iuBNlfFy14poDPd5h0=";
   };
 
-  patches = [
-    # TODO: remove on the next version bump
-    (fetchpatch {
-      name = "include-schema-conversion-utils-source.patch";
-      url = "https://github.com/tensorflow/tensorflow/commit/f3c4f4733692150fd6174f2cd16438cfaba2e5ab.patch";
-      sha256 = "0zx4hbz679kn79f30159rl1mq74dg45cvaawii0cyv48z472yy4k";
-    })
-    # TODO: remove on the next version bump
-    (fetchpatch {
-      name = "cxxstandard-var.patch";
-      url = "https://github.com/tensorflow/tensorflow/commit/9b128ae4200e10b4752f903492d1e7d11957ed5c.patch";
-      sha256 = "1q0izdwdji5fbyqll6k4dmkzfykyvvz5cvc6hysdj285nkn2wy6h";
-    })
+  bazel = buildPackages.bazel_5;
+
+  nativeBuildInputs = [ pythonEnv buildPackages.perl ];
+
+  bazelTargets = [
+    "//tensorflow/lite:libtensorflowlite.so"
+    "//tensorflow/lite/c:tensorflowlite_c"
+    "//tensorflow/lite/tools/benchmark:benchmark_model"
+    "//tensorflow/lite/tools/benchmark:benchmark_model_performance_options"
   ];
 
-  buildInputs = [ zlib flatbuffers ];
+  bazelFlags = [
+    "--config=opt"
+  ] ++ lib.optionals (hostPlatform.system != buildPlatform.system) [
+    "--config=${bazelHostConfigName.${hostPlatform.system}}"
+  ];
 
-  dontConfigure = true;
+  bazelBuildFlags = [ "--cxxopt=--std=c++17" ];
 
-  postPatch = ''
-    substituteInPlace ./tensorflow/lite/tools/make/Makefile \
-      --replace /bin/bash ${bash}/bin/bash \
-      --replace /bin/sh ${bash}/bin/sh
-  '';
+  buildAttrs = {
+    installPhase = ''
+      mkdir -p $out/{bin,lib}
+
+      # copy the libs and binaries into the output dir
+      cp ./bazel-bin/tensorflow/lite/c/libtensorflowlite_c.so $out/lib
+      cp ./bazel-bin/tensorflow/lite/libtensorflowlite.so $out/lib
+      cp ./bazel-bin/tensorflow/lite/tools/benchmark/benchmark_model $out/bin
+      cp ./bazel-bin/tensorflow/lite/tools/benchmark/benchmark_model_performance_options $out/bin
 
-  makefile = "tensorflow/lite/tools/make/Makefile";
-
-  preBuild =
-    let
-      includes =
-        lib.concatMapStringsSep
-          " "
-          (subdir: "-I $PWD/tensorflow/lite/tools/make/downloads/${subdir}")
-          [
-            "neon_2_sse"
-            "gemmlowp"
-            "absl"
-            "fp16/include"
-            "farmhash/src"
-            "ruy"
-            "cpuinfo"
-            "cpuinfo/src"
-            "cpuinfo/include"
-            "cpuinfo/deps/clog/include"
-            "eigen"
-          ];
-    in
-    ''
-      # enter the vendoring lair of doom
-
-      prefix="$PWD/tensorflow/lite/tools/make/downloads"
-
-      mkdir -p "$prefix"
-
-      tar xzf ${fft2d-src} -C "$prefix"
-
-      ln -s ${ruy-src} "$prefix/ruy"
-      ln -s ${gemmlowp-src} "$prefix/gemmlowp"
-      ln -s ${neon-2-sse-src} "$prefix/neon_2_sse"
-      ln -s ${farmhash-src} "$prefix/farmhash"
-      ln -s ${cpuinfo-src} "$prefix/cpuinfo"
-      ln -s ${fp16-src} "$prefix/fp16"
-      ln -s ${tflite-eigen} "$prefix/eigen"
-
-      # tensorflow lite is using the *source* of flatbuffers
-      ln -s ${flatbuffers.src} "$prefix/flatbuffers"
-
-      # tensorflow lite expects to compile abseil into `libtensorflow-lite.a`
-      ln -s ${abseil-cpp.src} "$prefix/absl"
-
-      # set CXXSTANDARD=c++17 here because abseil-cpp in nixpkgs is set as
-      # such and would be used in dependents like libedgetpu
-      buildFlagsArray+=(
-        INCLUDES="-I $PWD ${includes}"
-        CXXSTANDARD="-std=c++17"
-        TARGET_TOOLCHAIN_PREFIX=""
-        -j$NIX_BUILD_CORES
-        all)
+      find . -type f -name '*.h' | while read f; do
+        path="$out/include/''${f/.\//}"
+        install -D "$f" "$path"
+
+        # remove executable bit from headers
+        chmod -x "$path"
+      done
     '';
+  };
+
+  fetchAttrs.sha256 = bazelDepsSha256;
 
-  installPhase = ''
-    mkdir "$out"
+  PYTHON_BIN_PATH = pythonEnv.interpreter;
 
-    # copy the static lib and binaries into the output dir
-    cp -r ./tensorflow/lite/tools/make/gen/linux_${stdenv.hostPlatform.uname.processor}/{bin,lib} "$out"
+  dontAddBazelOpts = true;
+  removeRulesCC = false;
 
-    find ./tensorflow/lite -type f -name '*.h' | while read f; do
-      path="$out/include/''${f/.\//}"
-      install -D "$f" "$path"
+  postPatch = ''
+    rm .bazelversion
+  '';
 
-      # remove executable bit from headers
-      chmod -x "$path"
-    done
+  preConfigure = ''
+    patchShebangs configure
   '';
 
+  # configure script freaks out when parameters are passed
+  dontAddPrefix = true;
+  configurePlatforms = [];
+
   meta = with lib; {
     description = "An open source deep learning framework for on-device inference.";
     homepage = "https://www.tensorflow.org/lite";
     license = licenses.asl20;
-    maintainers = with maintainers; [ cpcloud ];
+    maintainers = with maintainers; [ mschwaig cpcloud ];
     platforms = [ "x86_64-linux" "aarch64-linux" ];
-    knownVulnerabilities = [
-      # at least some of
-      "CVE-2023-27579"
-      "CVE-2023-25801"
-      "CVE-2023-25676"
-      "CVE-2023-25675"
-      "CVE-2023-25674"
-      "CVE-2023-25673"
-      "CVE-2023-25671"
-      "CVE-2023-25670"
-      "CVE-2023-25669"
-      "CVE-2023-25668"
-      "CVE-2023-25667"
-      "CVE-2023-25665"
-      "CVE-2023-25666"
-      "CVE-2023-25664"
-      "CVE-2023-25663"
-      "CVE-2023-25662"
-      "CVE-2023-25660"
-      "CVE-2023-25659"
-      "CVE-2023-25658"
-      # and many many more
-    ];
   };
 }
diff --git a/nixpkgs/pkgs/development/libraries/science/math/tiny-cuda-nn/default.nix b/nixpkgs/pkgs/development/libraries/science/math/tiny-cuda-nn/default.nix
index ef501dfd09a0..d046c6864539 100644
--- a/nixpkgs/pkgs/development/libraries/science/math/tiny-cuda-nn/default.nix
+++ b/nixpkgs/pkgs/development/libraries/science/math/tiny-cuda-nn/default.nix
@@ -1,20 +1,20 @@
-{ cmake
-, cudaPackages
-, fetchFromGitHub
-, lib
-, ninja
-, pkgs
-, python3Packages ? { }
-, pythonSupport ? false
-, stdenv
-, symlinkJoin
-, which
-}:
-let
+{
+  cmake,
+  cudaPackages,
+  fetchFromGitHub,
+  lib,
+  ninja,
+  python3Packages ? {},
+  pythonSupport ? false,
+  stdenv,
+  symlinkJoin,
+  which,
+}: let
   inherit (lib) lists strings;
   inherit (cudaPackages) backendStdenv cudaFlags;
 
   cuda-common-redist = with cudaPackages; [
+    cuda_cudart # cuda_runtime.h
     libcublas # cublas_v2.h
     libcusolver # cusolverDn.h
     libcusparse # cusparse.h
@@ -22,10 +22,9 @@ let
 
   cuda-native-redist = symlinkJoin {
     name = "cuda-redist";
-    paths = with cudaPackages; [
-      cuda_cudart # cuda_runtime.h
-      cuda_nvcc
-    ] ++ cuda-common-redist;
+    paths = with cudaPackages;
+      [cuda_nvcc]
+      ++ cuda-common-redist;
   };
 
   cuda-redist = symlinkJoin {
@@ -33,120 +32,127 @@ let
     paths = cuda-common-redist;
   };
 in
-stdenv.mkDerivation (finalAttrs: {
-  name = "tiny-cuda-nn";
-  version = "1.6";
-
-  format = strings.optionalString pythonSupport "setuptools";
-
-  src = fetchFromGitHub {
-    owner = "NVlabs";
-    repo = finalAttrs.name;
-    rev = "v${finalAttrs.version}";
-    fetchSubmodules = true;
-    hash = "sha256-qW6Fk2GB71fvZSsfu+mykabSxEKvaikZ/pQQZUycOy0=";
-  };
-
-  nativeBuildInputs = [
-    cmake
-    cuda-native-redist
-    ninja
-    which
-  ] ++ lists.optionals pythonSupport (with python3Packages; [
-    pip
-    setuptools
-    wheel
-  ]);
-
-  buildInputs = [
-    cuda-redist
-  ] ++ lib.optionals pythonSupport (
-    with python3Packages; [
-      pybind11
-      python
-    ]
-  );
-
-  propagatedBuildInputs = lib.optionals pythonSupport (
-    with python3Packages; [
-      torch
-    ]
-  );
-
-  # NOTE: We cannot use pythonImportsCheck for this module because it uses torch to immediately
-  #   initailize CUDA and GPU access is not allowed in the nix build environment.
-  # NOTE: There are no tests for the C++ library or the python bindings, so we just skip the check
-  #   phase -- we're not missing anything.
-  doCheck = false;
-
-  preConfigure = ''
-    export TCNN_CUDA_ARCHITECTURES=${
-      strings.concatStringsSep ";" (lists.map cudaFlags.dropDot cudaFlags.cudaCapabilities)
-    }
-    export CUDA_HOME=${cuda-native-redist}
-    export LIBRARY_PATH=${cuda-native-redist}/lib/stubs:$LIBRARY_PATH
-    export CC=${backendStdenv.cc}/bin/cc
-    export CXX=${backendStdenv.cc}/bin/c++
-  '';
-
-  # When building the python bindings, we cannot re-use the artifacts from the C++ build so we
-  # skip the CMake confurePhase and the buildPhase.
-  dontUseCmakeConfigure = pythonSupport;
-
-  # The configurePhase usually puts you in the build directory, so for the python bindings we
-  # need to change directories to the source directory.
-  configurePhase = strings.optionalString pythonSupport ''
-    runHook preConfigure
-    mkdir -p $NIX_BUILD_TOP/build
-    cd $NIX_BUILD_TOP/build
-    runHook postConfigure
-  '';
-
-  buildPhase = strings.optionalString pythonSupport ''
-    runHook preBuild
-    python -m pip wheel \
-      --no-build-isolation \
-      --no-clean \
-      --no-deps \
-      --no-index \
-      --verbose \
-      --wheel-dir $NIX_BUILD_TOP/build \
-      $NIX_BUILD_TOP/source/bindings/torch
-    runHook postBuild
-  '';
-
-  installPhase = ''
-    runHook preInstall
-    mkdir -p $out/lib
-  ''
-  # Installing the C++ library just requires copying the static library to the output directory
-  + strings.optionalString (!pythonSupport) ''
-    cp libtiny-cuda-nn.a $out/lib/
-  ''
-  # Installing the python bindings requires building the wheel and installing it
-  + strings.optionalString pythonSupport ''
-    python -m pip install \
-      --no-build-isolation \
-      --no-cache-dir \
-      --no-deps \
-      --no-index \
-      --no-warn-script-location \
-      --prefix="$out" \
-      --verbose \
-      ./*.whl
-  '' + ''
-    runHook postInstall
-  '';
-
-  passthru = {
-    inherit cudaPackages;
-  };
-
-  meta = with lib; {
-    description = "Lightning fast C++/CUDA neural network framework";
-    homepage = "https://github.com/NVlabs/tiny-cuda-nn";
-    license = licenses.bsd3;
-    maintainers = with maintainers; [ connorbaker ];
-    platforms = platforms.linux;
-  };
-})
+  stdenv.mkDerivation (finalAttrs: {
+    pname = "tiny-cuda-nn";
+    version = "1.6";
+    strictDeps = true;
+
+    format = strings.optionalString pythonSupport "setuptools";
+
+    src = fetchFromGitHub {
+      owner = "NVlabs";
+      repo = finalAttrs.pname;
+      rev = "v${finalAttrs.version}";
+      fetchSubmodules = true;
+      hash = "sha256-qW6Fk2GB71fvZSsfu+mykabSxEKvaikZ/pQQZUycOy0=";
+    };
+
+    nativeBuildInputs =
+      [
+        cmake
+        cuda-native-redist
+        ninja
+        which
+      ]
+      ++ lists.optionals pythonSupport (with python3Packages; [
+        pip
+        setuptools
+        wheel
+      ]);
+
+    buildInputs =
+      [
+        cuda-redist
+      ]
+      ++ lib.optionals pythonSupport (
+        with python3Packages; [
+          pybind11
+          python
+        ]
+      );
+
+    propagatedBuildInputs = lib.optionals pythonSupport (
+      with python3Packages; [
+        torch
+      ]
+    );
+
+    # NOTE: We cannot use pythonImportsCheck for this module because it uses torch to immediately
+    #   initailize CUDA and GPU access is not allowed in the nix build environment.
+    # NOTE: There are no tests for the C++ library or the python bindings, so we just skip the check
+    #   phase -- we're not missing anything.
+    doCheck = false;
+
+    preConfigure = ''
+      export TCNN_CUDA_ARCHITECTURES="${
+        strings.concatStringsSep ";" (lists.map cudaFlags.dropDot cudaFlags.cudaCapabilities)
+      }"
+      export CUDA_HOME="${cuda-native-redist}"
+      export LIBRARY_PATH="${cuda-native-redist}/lib/stubs:$LIBRARY_PATH"
+      export CC="${backendStdenv.cc}/bin/cc"
+      export CXX="${backendStdenv.cc}/bin/c++"
+    '';
+
+    # When building the python bindings, we cannot re-use the artifacts from the C++ build so we
+    # skip the CMake confurePhase and the buildPhase.
+    dontUseCmakeConfigure = pythonSupport;
+
+    # The configurePhase usually puts you in the build directory, so for the python bindings we
+    # need to change directories to the source directory.
+    configurePhase = strings.optionalString pythonSupport ''
+      runHook preConfigure
+      mkdir -p "$NIX_BUILD_TOP/build"
+      cd "$NIX_BUILD_TOP/build"
+      runHook postConfigure
+    '';
+
+    buildPhase = strings.optionalString pythonSupport ''
+      runHook preBuild
+      python -m pip wheel \
+        --no-build-isolation \
+        --no-clean \
+        --no-deps \
+        --no-index \
+        --verbose \
+        --wheel-dir "$NIX_BUILD_TOP/build" \
+        "$NIX_BUILD_TOP/source/bindings/torch"
+      runHook postBuild
+    '';
+
+    installPhase =
+      ''
+        runHook preInstall
+        mkdir -p "$out/lib"
+      ''
+      # Installing the C++ library just requires copying the static library to the output directory
+      + strings.optionalString (!pythonSupport) ''
+        cp libtiny-cuda-nn.a "$out/lib/"
+      ''
+      # Installing the python bindings requires building the wheel and installing it
+      + strings.optionalString pythonSupport ''
+        python -m pip install \
+          --no-build-isolation \
+          --no-cache-dir \
+          --no-deps \
+          --no-index \
+          --no-warn-script-location \
+          --prefix="$out" \
+          --verbose \
+          ./*.whl
+      ''
+      + ''
+        runHook postInstall
+      '';
+
+    passthru = {
+      inherit cudaPackages;
+    };
+
+    meta = with lib; {
+      description = "Lightning fast C++/CUDA neural network framework";
+      homepage = "https://github.com/NVlabs/tiny-cuda-nn";
+      license = licenses.bsd3;
+      maintainers = with maintainers; [connorbaker];
+      platforms = platforms.linux;
+    };
+  })
diff --git a/nixpkgs/pkgs/development/libraries/science/networking/ns-3/default.nix b/nixpkgs/pkgs/development/libraries/science/networking/ns-3/default.nix
index 0eba41234fd5..f515253026b8 100644
--- a/nixpkgs/pkgs/development/libraries/science/networking/ns-3/default.nix
+++ b/nixpkgs/pkgs/development/libraries/science/networking/ns-3/default.nix
@@ -1,77 +1,108 @@
 { stdenv
+, breakpointHook
 , fetchFromGitLab
 , python
-, wafHook
+, libxml2
+, sqlite
 
-# for binding generation
-, castxml ? null
+, boost
+, gtk3-x11
+, root
+, glib
+, gsl
 
-# can take a long time, generates > 30000 images/graphs
-, enableDoxygen ? false
+, cmake
+, pkg-config
+
+
+, libpcap
 
-# e.g. "optimized" or "debug". If not set, use default one
-, build_profile ? null
+, jansson
 
-# --enable-examples
-, withExamples ? false
+, harfbuzz
+, freetype
 
-# very long
-, withManual ? false, doxygen ? null, graphviz ? null, imagemagick ? null
-# for manual, tetex is used to get the eps2pdf binary
-# texlive to get latexmk. building manual still fails though
-, dia, tetex ? null, ghostscript ? null, texlive ? null
+  # for binding generation
+, castxml ? null
+, cppyy ? null
+
+  # can take a long time, generates > 30000 images/graphs
+, enableDoxygen ? false
 
-# generates python bindings
-, pythonSupport ? false, ncurses ? null
+  # very long
+, withManual ? false
+, doxygen ? null
+, graphviz ? null
+, imagemagick ? null
+  # for manual, tetex is used to get the eps2pdf binary
+  # texlive to get latexmk. building manual still fails though
+, dia
+, tetex ? null
+, ghostscript ? null
+, texlive ? null
+
+  # generates python bindings
+, pythonSupport ? true
+, ncurses ? null
 
-# All modules can be enabled by choosing 'all_modules'.
-# we include here the DCE mandatory ones
-, modules ? [ "core" "network" "internet" "point-to-point" "point-to-point-layout" "fd-net-device" "netanim" ]
 , lib
 }:
 
 let
-  pythonEnv = python.withPackages(ps:
+  pythonEnv = python.withPackages (ps:
     lib.optional withManual ps.sphinx
-    ++ lib.optionals pythonSupport (with ps;[ pybindgen pygccxml ])
+    ++ lib.optionals pythonSupport (with ps;[ pybindgen pygccxml cppyy])
   );
 in
 stdenv.mkDerivation rec {
   pname = "ns-3";
-  version = "35";
+  version = "39";
 
   src = fetchFromGitLab {
     owner = "nsnam";
-    repo   = "ns-3-dev";
-    rev    = "ns-3.${version}";
-    sha256 = "sha256-3w+lCWWra9sndL8+vkGfH5plrDYYCMFi1PzwIVRku6I=";
+    repo = "ns-3-dev";
+    rev = "ns-3.${version}";
+    sha256 = "sha256-2d8xCCfxRpcCZgt7ne17F7cUo/wIxLyvjQs3izNUnmY=";
   };
 
-  nativeBuildInputs = [ wafHook python ];
+  nativeBuildInputs = [ cmake pkg-config pythonEnv ];
 
-  outputs = [ "out" ] ++ lib.optional pythonSupport "py";
+  outputs = [ "out" ];
 
   # ncurses is a hidden dependency of waf when checking python
   buildInputs = lib.optionals pythonSupport [ castxml ncurses ]
     ++ lib.optionals enableDoxygen [ doxygen graphviz imagemagick ]
-    ++ lib.optionals withManual [ dia tetex ghostscript texlive.combined.scheme-medium ];
+    ++ lib.optionals withManual [ dia tetex ghostscript imagemagick texlive.combined.scheme-medium ]
+    ++ [
+    libxml2
+    pythonEnv
+    sqlite.dev
+    gsl
+    boost
+    root
+    glib.out
+    glib.dev
+    libpcap
+    gtk3-x11.dev
+    harfbuzz
+    freetype
+    jansson
+  ];
 
   propagatedBuildInputs = [ pythonEnv ];
 
-  postPatch = ''
-    patchShebangs doc/ns3_html_theme/get_version.sh
-  '';
+  preConfigure = ''
+     substituteInPlace src/tap-bridge/CMakeLists.txt \
+       --replace '-DTAP_CREATOR="''${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/src/tap-bridge/' "-DTAP_CREATOR=\"$out/libexec/ns3/"
 
-  wafConfigureFlags = with lib; [
-      "--enable-modules=${concatStringsSep "," modules}"
-      "--with-python=${pythonEnv.interpreter}"
-  ]
-  ++ optional (build_profile != null) "--build-profile=${build_profile}"
-  ++ optional withExamples " --enable-examples "
-  ++ optional doCheck " --enable-tests "
-  ;
+    substituteInPlace src/fd-net-device/CMakeLists.txt \
+      --replace '-DRAW_SOCK_CREATOR="''${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/src/fd-net-device/' "-DRAW_SOCK_CREATOR=\"$out/libexec/ns3/"
+
+    substituteInPlace src/fd-net-device/CMakeLists.txt \
+      --replace '-DTAP_DEV_CREATOR="''${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/src/fd-net-device/' "-DTAP_DEV_CREATOR=\"$out/libexec/ns3/"
+  '';
 
-  doCheck = true;
+  doCheck = false;
 
   buildTargets = "build"
     + lib.optionalString enableDoxygen " doxygen"
@@ -80,25 +111,25 @@ stdenv.mkDerivation rec {
   # to prevent fatal error: 'backward_warning.h' file not found
   CXXFLAGS = "-D_GLIBCXX_PERMIT_BACKWARD_HASH";
 
-  postBuild = with lib; let flags = concatStringsSep ";" (
-      optional enableDoxygen "./waf doxygen"
-      ++ optional withManual "./waf sphinx"
-    );
-    in "${flags}"
-  ;
-
-  postInstall = ''
-    moveToOutput "${pythonEnv.libPrefix}" "$py"
-  '';
-
-  # we need to specify the proper interpreter else ns3 can check against a
-  # different version
-  checkPhase =  ''
-    ${pythonEnv.interpreter} ./test.py --nowaf
-  '';
+  # Make generated python bindings discoverable in customized python environment
+  passthru = { pythonModule = python; };
+
+  cmakeFlags = [
+    "-DPython3_LIBRARY_DIRS=${pythonEnv}/lib"
+    "-DPython3_INCLUDE_DIRS=${pythonEnv}/include"
+    "-DPython3_EXECUTABLE=${pythonEnv}/bin/python"
+    "-DNS3_PYTHON_BINDINGS=ON"
+    "-DNS3_DES_METRICS=ON"
+    "-DNS3_BINDINGS_INSTALL_DIR=lib/${pythonEnv.libPrefix}/site-packages"
+    "-DNS3_LOG=ON"
+    "-DNS3_ASSERT=ON"
+    "-DNS3_GTK3=ON"
+    "-DGTK3_GLIBCONFIG_INCLUDE_DIR=${glib.out}/lib/glib-2.0/include"
+  ]
+    ++ lib.optional doCheck "-DNS3_TESTS=ON";
 
   # strictoverflow prevents clang from discovering pyembed when bindings
-  hardeningDisable = [ "fortify" "strictoverflow"];
+  hardeningDisable = [ "fortify" "strictoverflow" ];
 
   meta = with lib; {
     homepage = "http://www.nsnam.org";