Merge commit 'e4134747f5666bcab8680aff67fa3b63384f9a0f'

14 files changed, 116 insertions, 58 deletions

diff --git a/nixpkgs/pkgs/development/libraries/physics/apfel/default.nix b/nixpkgs/pkgs/development/libraries/physics/apfel/default.nix
index 5302ad21258a..4ebfd6fbfa37 100644
--- a/nixpkgs/pkgs/development/libraries/physics/apfel/default.nix
+++ b/nixpkgs/pkgs/development/libraries/physics/apfel/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitHub, gfortran, lhapdf, python2 }:
+{ stdenv, fetchFromGitHub, gfortran, lhapdf, python2, zlib }:
 
 stdenv.mkDerivation rec {
   pname = "apfel";
@@ -11,7 +11,7 @@ stdenv.mkDerivation rec {
     sha256 = "13n5ygbqvskg3qq5n4sff1nbii0li0zf1vqissai7x0hynxgy7p6";
   };
 
-  buildInputs = [ gfortran lhapdf python2 ];
+  buildInputs = [ gfortran lhapdf python2 zlib ];
 
   enableParallelBuilding = true;
 
diff --git a/nixpkgs/pkgs/development/libraries/physics/applgrid/default.nix b/nixpkgs/pkgs/development/libraries/physics/applgrid/default.nix
index edda5148068a..3e2a53d81dd8 100644
--- a/nixpkgs/pkgs/development/libraries/physics/applgrid/default.nix
+++ b/nixpkgs/pkgs/development/libraries/physics/applgrid/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, gfortran, hoppet, lhapdf, root5 }:
+{ stdenv, fetchurl, gfortran, hoppet, lhapdf, root5, zlib }:
 
 stdenv.mkDerivation rec {
   pname = "applgrid";
@@ -9,7 +9,8 @@ stdenv.mkDerivation rec {
     sha256 = "1yw9wrk3vjv84kd3j4s1scfhinirknwk6xq0hvj7x2srx3h93q9p";
   };
 
-  buildInputs = [ gfortran hoppet lhapdf root5 ];
+  # For some reason zlib was only needed after bump to gfortran8
+  buildInputs = [ gfortran hoppet lhapdf root5 zlib ];
 
   patches = [
     ./bad_code.patch
diff --git a/nixpkgs/pkgs/development/libraries/physics/fastjet-contrib/default.nix b/nixpkgs/pkgs/development/libraries/physics/fastjet-contrib/default.nix
new file mode 100644
index 000000000000..2bc5b12dfb77
--- /dev/null
+++ b/nixpkgs/pkgs/development/libraries/physics/fastjet-contrib/default.nix
@@ -0,0 +1,40 @@
+{ stdenv, fetchurl, fastjet }:
+
+stdenv.mkDerivation rec {
+  pname = "fastjet-contrib";
+  version = "1.042";
+
+  src = fetchurl {
+    url = "http://fastjet.hepforge.org/contrib/downloads/fjcontrib-${version}.tar.gz";
+    sha256 = "0cc8dn6g7adj2pgs8hvczg68i3xhlk6978m4gxamgibilf9jw1av";
+  };
+
+  buildInputs = [ fastjet ];
+
+  postPatch = ''
+    for f in Makefile.in */Makefile; do
+      substituteInPlace "$f" --replace "CXX=g++" ""
+    done
+    patchShebangs ./configure ./utils/check.sh ./utils/install-sh
+  '';
+
+  enableParallelBuilding = true;
+
+  doCheck = true;
+
+  postBuild = ''
+    make fragile-shared
+  '';
+
+  postInstall = ''
+    make fragile-shared-install
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Third party extensions for FastJet";
+    homepage = "http://fastjet.fr/";
+    license = licenses.gpl2;
+    maintainers = with maintainers; [ veprbl ];
+    platforms = platforms.unix;
+  };
+}
diff --git a/nixpkgs/pkgs/development/libraries/physics/fastjet/default.nix b/nixpkgs/pkgs/development/libraries/physics/fastjet/default.nix
index 826362cc586b..96eb13d11cdc 100644
--- a/nixpkgs/pkgs/development/libraries/physics/fastjet/default.nix
+++ b/nixpkgs/pkgs/development/libraries/physics/fastjet/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "fastjet";
-  version = "3.3.2";
+  version = "3.3.3";
 
   src = fetchurl {
     url = "http://fastjet.fr/repo/fastjet-${version}.tar.gz";
-    sha256 = "1hk3k7dyik640dzg21filpywc2dl862nl2hbpg384hf5pw9syn9z";
+    sha256 = "0avkgn19plq593p872hirr0yj2vgjvsi88w68ngarbp55hla1c1h";
   };
 
   buildInputs = [ python2 ];
diff --git a/nixpkgs/pkgs/development/libraries/physics/geant4/datasets-hook.sh b/nixpkgs/pkgs/development/libraries/physics/geant4/datasets-hook.sh
index 14e3b8f2fc38..8aed8b8832b3 100644
--- a/nixpkgs/pkgs/development/libraries/physics/geant4/datasets-hook.sh
+++ b/nixpkgs/pkgs/development/libraries/physics/geant4/datasets-hook.sh
@@ -1,5 +1,5 @@
 @name@ () {
-    export G4@envvar@DATA="@out@/data"
+    export G4@envvar@DATA="@datadir@"
 }
 
 postHooks+=(@name@)
diff --git a/nixpkgs/pkgs/development/libraries/physics/geant4/datasets.nix b/nixpkgs/pkgs/development/libraries/physics/geant4/datasets.nix
index 88f2dc2cd6d4..22fda0cf9800 100644
--- a/nixpkgs/pkgs/development/libraries/physics/geant4/datasets.nix
+++ b/nixpkgs/pkgs/development/libraries/physics/geant4/datasets.nix
@@ -1,12 +1,13 @@
-{ stdenv, fetchurl, }:
+{ stdenv, fetchurl, geant_version }:
 
 let
-  mkDataset = { name, version, sha256, envvar}:
+  mkDataset = { name, version, sha256, envvar }:
     stdenv.mkDerivation {
       inherit name version;
+      inherit geant_version;
 
       src = fetchurl {
-        url = "https://geant4-data.web.cern.ch/geant4-data/datasets/${name}.${version}.tar.gz";
+        url = "https://cern.ch/geant4-data/datasets/${name}.${version}.tar.gz";
         inherit sha256;
       };
 
@@ -14,9 +15,10 @@ let
       dontBuild = true;
       dontConfigure = true;
 
+      datadir = "${placeholder "out"}/share/Geant4-${geant_version}/data/${name}${version}";
       installPhase = ''
-        mkdir -p $out/data
-        mv ./* $out/data
+        mkdir -p $datadir
+        mv ./* $datadir
       '';
 
       inherit envvar;
@@ -40,37 +42,37 @@ in
 
     {
       name = "G4EMLOW";
-      version = "7.3";
-      sha256 = "583aa7f34f67b09db7d566f904c54b21e95a9ac05b60e2bfb794efb569dba14e";
+      version = "7.7";
+      sha256 = "16dec6adda6477a97424d749688d73e9bd7d0b84d0137a67cf341f1960984663";
       envvar = "LE";
     }
 
     {
       name = "G4PhotonEvaporation";
-      version = "5.2";
-      sha256 = "83607f8d36827b2a7fca19c9c336caffbebf61a359d0ef7cee44a8bcf3fc2d1f";
+      version = "5.3";
+      sha256 = "d47ababc8cbe548065ef644e9bd88266869e75e2f9e577ebc36bc55bf7a92ec8";
       envvar = "LEVELGAMMA";
     }
 
     {
       name = "G4RadioactiveDecay";
-      version = "5.2";
-      sha256 = "99c038d89d70281316be15c3c98a66c5d0ca01ef575127b6a094063003e2af5d";
+      version = "5.3";
+      sha256 = "5c8992ac57ae56e66b064d3f5cdfe7c2fee76567520ad34a625bfb187119f8c1";
       envvar = "RADIOACTIVE";
     }
 
     {
       name = "G4SAIDDATA";
-      version = "1.1";
-      sha256 = "a38cd9a83db62311922850fe609ecd250d36adf264a88e88c82ba82b7da0ed7f";
+      version = "2.0";
+      sha256 = "1d26a8e79baa71e44d5759b9f55a67e8b7ede31751316a9e9037d80090c72e91";
       envvar = "SAIDXS";
     }
 
     {
-      name = "G4NEUTRONXS";
-      version = "1.4";
-      sha256 = "57b38868d7eb060ddd65b26283402d4f161db76ed2169437c266105cca73a8fd";
-      envvar = "NEUTRONXS";
+      name = "G4PARTICLEXS";
+      version = "1.1";
+      sha256 = "100a11c9ed961152acfadcc9b583a9f649dda4e48ab314fcd4f333412ade9d62";
+      envvar = "PARTICLEXS";
     }
 
     {
@@ -81,6 +83,13 @@ in
     }
 
     {
+      name = "G4INCL";
+      version = "1.0";
+      sha256 = "716161821ae9f3d0565fbf3c2cf34f4e02e3e519eb419a82236eef22c2c4367d";
+      envvar = "INCL";
+    }
+
+    {
       name = "G4PII";
       version = "1.3";
       sha256 = "6225ad902675f4381c98c6ba25fc5a06ce87549aa979634d3d03491d6616e926";
diff --git a/nixpkgs/pkgs/development/libraries/physics/geant4/default.nix b/nixpkgs/pkgs/development/libraries/physics/geant4/default.nix
index 4ec117777857..007e4ad0c32f 100644
--- a/nixpkgs/pkgs/development/libraries/physics/geant4/default.nix
+++ b/nixpkgs/pkgs/development/libraries/physics/geant4/default.nix
@@ -30,18 +30,18 @@
 , libXpm
 
 # For enableQT, enableXM, enableOpenGLX11, enableRaytracerX11.
-, libGLU_combined
+, libGLU, libGL
 , xlibsWrapper
 , libXmu
 }:
 
-stdenv.mkDerivation {
-  version = "10.4.1";
+stdenv.mkDerivation rec {
+  version = "10.5.1";
   pname = "geant4";
 
   src = fetchurl{
-    url = "http://cern.ch/geant4-data/releases/geant4.10.04.p01.tar.gz";
-    sha256 = "a3eb13e4f1217737b842d3869dc5b1fb978f761113e74bd4eaf6017307d234dd";
+    url = "http://cern.ch/geant4-data/releases/geant4.10.05.p01.tar.gz";
+    sha256 = "f4a292220500fad17e0167ce3153e96e3410ecbe96284e572dc707f63523bdff";
   };
 
   cmakeFlags = [
@@ -64,7 +64,7 @@ stdenv.mkDerivation {
 
   enableParallelBuilding = true;
   nativeBuildInputs =  [ cmake ];
-  buildInputs = [ clhep expat zlib libGLU_combined xlibsWrapper libXmu ]
+  buildInputs = [ clhep expat zlib libGLU libGL xlibsWrapper libXmu ]
     ++ stdenv.lib.optionals enableGDML [ xercesc ]
     ++ stdenv.lib.optionals enableXM [ motif ]
     ++ stdenv.lib.optionals enableQT [ qtbase ]
@@ -78,7 +78,10 @@ stdenv.mkDerivation {
   setupHook = ./geant4-hook.sh;
 
   passthru = {
-    data = import ./datasets.nix { inherit stdenv fetchurl; };
+    data = import ./datasets.nix {
+          inherit stdenv fetchurl;
+          geant_version = version;
+      };
   };
 
   # Set the myriad of envars required by Geant4 if we use a nix-shell.
@@ -95,7 +98,7 @@ stdenv.mkDerivation {
     '';
     homepage = http://www.geant4.org;
     license = licenses.g4sl;
-    maintainers = with maintainers; [ tmplt ];
+    maintainers = with maintainers; [ tmplt omnipotententity ];
     platforms = platforms.linux;
   };
 }
diff --git a/nixpkgs/pkgs/development/libraries/physics/geant4/g4py/default.nix b/nixpkgs/pkgs/development/libraries/physics/geant4/g4py/default.nix
index 3d6891c48e2b..dddd7078b86e 100644
--- a/nixpkgs/pkgs/development/libraries/physics/geant4/g4py/default.nix
+++ b/nixpkgs/pkgs/development/libraries/physics/geant4/g4py/default.nix
@@ -18,7 +18,7 @@ stdenv.mkDerivation {
   inherit (geant4_nomt) version src;
   pname = "g4py";
 
-  sourceRoot = "geant4.10.04.p01/environments/g4py";
+  sourceRoot = "geant4.10.05.p01/environments/g4py";
 
   nativeBuildInputs = [ cmake ];
   buildInputs = [ geant4_nomt xercesc boost_python python ];
diff --git a/nixpkgs/pkgs/development/libraries/physics/hepmc3/default.nix b/nixpkgs/pkgs/development/libraries/physics/hepmc3/default.nix
index 3116c4d36bba..d8aff555e556 100644
--- a/nixpkgs/pkgs/development/libraries/physics/hepmc3/default.nix
+++ b/nixpkgs/pkgs/development/libraries/physics/hepmc3/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "hepmc3";
-  version = "3.1.1";
+  version = "3.1.2";
 
   src = fetchurl {
     url = "http://hepmc.web.cern.ch/hepmc/releases/HepMC3-${version}.tar.gz";
-    sha256 = "1fs8ha5issls886g03azpwamry1k633zjrcx51v7g7vg9nbckjrg";
+    sha256 = "1izcldnjbyn6myr7nv7b4jivf2vmdi64ng9gk1vjh998755hfcs1";
   };
 
   buildInputs = [ cmake root ];
diff --git a/nixpkgs/pkgs/development/libraries/physics/herwig/default.nix b/nixpkgs/pkgs/development/libraries/physics/herwig/default.nix
index d252e62286b0..d52f92d96394 100644
--- a/nixpkgs/pkgs/development/libraries/physics/herwig/default.nix
+++ b/nixpkgs/pkgs/development/libraries/physics/herwig/default.nix
@@ -2,18 +2,18 @@
 
 stdenv.mkDerivation rec {
   pname = "herwig";
-  version = "7.1.5";
+  version = "7.2.0";
 
   src = fetchurl {
     url = "https://www.hepforge.org/archive/herwig/Herwig-${version}.tar.bz2";
-    sha256 = "0jnrv59zfa41gc37pqr3vaiz5jkh7w0k0alcax37b3mlbsnacr9r";
+    sha256 = "0r5iyai2j99pk9p36g4rp98bxm55zd1ik9kgm2zf5zgpvxfm8csr";
   };
 
   nativeBuildInputs = [ autoconf automake libtool ];
 
   buildInputs = [ boost fastjet gfortran gsl thepeg zlib ]
-    # There is a bug that requires for MMHT PDF's to be presend during the build
-    ++ (with lhapdf.pdf_sets; [ MMHT2014lo68cl MMHT2014nlo68cl ]);
+    # There is a bug that requires for default PDF's to be present during the build
+    ++ (with lhapdf.pdf_sets; [ CT14lo CT14nlo ]);
 
   postPatch = ''
     patchShebangs ./
@@ -25,12 +25,12 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
-  meta = {
+  meta = with stdenv.lib; {
     description = "A multi-purpose particle physics event generator";
-    license     = stdenv.lib.licenses.gpl2;
-    homepage    = https://herwig.hepforge.org/;
-    platforms   = stdenv.lib.platforms.unix;
-    maintainers = with stdenv.lib.maintainers; [ veprbl ];
-    broken      = stdenv.isAarch64; # doesn't compile: ignoring return value of 'FILE* freopen...
+    homepage = https://herwig.hepforge.org/;
+    license = licenses.gpl3;
+    maintainers = with maintainers; [ veprbl ];
+    platforms = platforms.unix;
+    broken = stdenv.isAarch64; # doesn't compile: ignoring return value of 'FILE* freopen...
   };
 }
diff --git a/nixpkgs/pkgs/development/libraries/physics/pythia/default.nix b/nixpkgs/pkgs/development/libraries/physics/pythia/default.nix
index 0398175a9a28..c37d4b9d2f1a 100644
--- a/nixpkgs/pkgs/development/libraries/physics/pythia/default.nix
+++ b/nixpkgs/pkgs/development/libraries/physics/pythia/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "pythia";
-  version = "8.243";
+  version = "8.244";
 
   src = fetchurl {
     url = "http://home.thep.lu.se/~torbjorn/pythia8/pythia${builtins.replaceStrings ["."] [""] version}.tgz";
-    sha256 = "0y8w5gdaczg8vdw63rkgjr1dcvqs2clqkdia34p30xcwgm1jgv7q";
+    sha256 = "1jlj9hgmk2gcm5p0zqsiz0dpv9vvj8ip261si7frrwfsk7wq0j73";
   };
 
   buildInputs = [ boost fastjet hepmc2 zlib rsync lhapdf ];
diff --git a/nixpkgs/pkgs/development/libraries/physics/qcdnum/default.nix b/nixpkgs/pkgs/development/libraries/physics/qcdnum/default.nix
index ad5f994620ff..e962303f5f06 100644
--- a/nixpkgs/pkgs/development/libraries/physics/qcdnum/default.nix
+++ b/nixpkgs/pkgs/development/libraries/physics/qcdnum/default.nix
@@ -1,15 +1,16 @@
-{ stdenv, fetchurl, gfortran }:
+{ stdenv, fetchurl, gfortran, zlib }:
 
 stdenv.mkDerivation rec {
   pname = "QCDNUM";
-  version = "17-01-13";
+  version = "17-01-15";
 
   src = fetchurl {
     url = "http://www.nikhef.nl/user/h24/qcdnum-files/download/qcdnum${builtins.replaceStrings ["-"] [""] version}.tar.gz";
-    sha256 = "0568rjviwvjkfihq2ka7g91vmialr31ryn7c69iqf13rcv5vzcw7";
+    sha256 = "0ibk1sppss45qh0g8i2c99alkx82xdbss3p55f5367bxjx4iqvvg";
   };
 
   nativeBuildInputs = [ gfortran ];
+  buildInputs = [ zlib ];
 
   enableParallelBuilding = true;
 
diff --git a/nixpkgs/pkgs/development/libraries/physics/rivet/default.nix b/nixpkgs/pkgs/development/libraries/physics/rivet/default.nix
index 914eee5c286b..95e44f2364cb 100644
--- a/nixpkgs/pkgs/development/libraries/physics/rivet/default.nix
+++ b/nixpkgs/pkgs/development/libraries/physics/rivet/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, fastjet, ghostscript, gsl, hepmc2, imagemagick, less, python2, texlive, yoda, which, makeWrapper }:
+{ stdenv, fetchurl, fetchpatch, fastjet, ghostscript, gsl, hepmc2, imagemagick, less, python2, texlive, yoda, which, makeWrapper }:
 
 stdenv.mkDerivation rec {
   pname = "rivet";
@@ -11,6 +11,10 @@ stdenv.mkDerivation rec {
 
   patches = [
     ./darwin.patch # configure relies on impure sw_vers to -Dunix
+    (fetchpatch {
+      url = "https://phab-files.hepforge.org/file/data/j3ja4jirrdyrovrmnbuh/PHID-FILE-6vnor4aoz3s2ejruisrg/file";
+      sha256 = "0flxv08wcd0m5di75s2zvm015k2k70nqgpcgcbq7m604z26pd6ab";
+    })
   ];
 
   latex = texlive.combine { inherit (texlive)
diff --git a/nixpkgs/pkgs/development/libraries/physics/thepeg/default.nix b/nixpkgs/pkgs/development/libraries/physics/thepeg/default.nix
index fa293eab3500..15c94668581d 100644
--- a/nixpkgs/pkgs/development/libraries/physics/thepeg/default.nix
+++ b/nixpkgs/pkgs/development/libraries/physics/thepeg/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "thepeg";
-  version = "2.1.5";
+  version = "2.2.0";
 
   src = fetchurl {
     url = "https://www.hepforge.org/archive/thepeg/ThePEG-${version}.tar.bz2";
-    sha256 = "1rmmwhk9abn9mc9j3127axjwpvymv21ld4wcivwz01pldkxh06n6";
+    sha256 = "1y7vwsc4zk629np4rpjh7a8qzvyqc2fixnwq98dgdndp2544gqfk";
   };
 
   buildInputs = [ boost fastjet gsl hepmc2 lhapdf rivet zlib ];
@@ -19,11 +19,11 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
-  meta = {
+  meta = with stdenv.lib; {
     description = "Toolkit for High Energy Physics Event Generation";
-    license     = stdenv.lib.licenses.gpl2;
-    homepage    = https://herwig.hepforge.org/;
-    platforms   = stdenv.lib.platforms.unix;
-    maintainers = with stdenv.lib.maintainers; [ veprbl ];
+    homepage = https://herwig.hepforge.org/;
+    license = licenses.gpl3;
+    maintainers = with maintainers; [ veprbl ];
+    platforms = platforms.unix;
   };
 }