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author | Alyssa Ross <hi@alyssa.is> | 2020-01-26 23:38:55 +0000 |
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committer | Alyssa Ross <hi@alyssa.is> | 2020-01-26 23:38:55 +0000 |
commit | 02e12559a420f8c544b2facc4931904900a05518 (patch) | |
tree | ba39d8fa9e874b935d204e74accfed5caaccf0fa /nixpkgs/pkgs/applications/science/chemistry | |
parent | 542f80867c380b0ac79250b6e5358dda8bc49e0d (diff) | |
parent | 3d085a399c436a41d875801619e8f976b8519196 (diff) | |
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Merge commit '3d085a399c436a41d875801619e8f976b8519196'
Diffstat (limited to 'nixpkgs/pkgs/applications/science/chemistry')
-rw-r--r-- | nixpkgs/pkgs/applications/science/chemistry/pymol/default.nix | 43 |
1 files changed, 24 insertions, 19 deletions
diff --git a/nixpkgs/pkgs/applications/science/chemistry/pymol/default.nix b/nixpkgs/pkgs/applications/science/chemistry/pymol/default.nix index b1bd01fb2f7f..e8b3b23ddd9d 100644 --- a/nixpkgs/pkgs/applications/science/chemistry/pymol/default.nix +++ b/nixpkgs/pkgs/applications/science/chemistry/pymol/default.nix @@ -1,15 +1,10 @@ -{ stdenv, fetchurl, makeDesktopItem +{ lib, stdenv, fetchurl, fetchFromGitHub, makeDesktopItem , python3, python3Packages -, glew, freeglut, libpng, libxml2, tk, freetype, msgpack }: +, glew, glm, freeglut, libpng, libxml2, tk, freetype, msgpack }: -with stdenv.lib; - let pname = "pymol"; - ver_maj = "2"; - ver_min = "1"; - version = "${ver_maj}.${ver_min}.0"; description = "A Python-enhanced molecular graphics tool"; desktopItem = makeDesktopItem { @@ -18,35 +13,45 @@ let desktopName = "PyMol Molecular Graphics System"; genericName = "Molecular Modeler"; comment = description; + icon = pname; mimeType = "chemical/x-pdb;chemical/x-mdl-molfile;chemical/x-mol2;chemical/seq-aa-fasta;chemical/seq-na-fasta;chemical/x-xyz;chemical/x-mdl-sdf;"; categories = "Graphics;Education;Science;Chemistry;"; }; in -python3Packages.buildPythonApplication { - name = "pymol-${version}"; - src = fetchurl { - url = "mirror://sourceforge/project/pymol/pymol/${ver_maj}/pymol-v${version}.tar.bz2"; - sha256 = "1qpacd5w4r9a0nm5iqmkd92ym3ai00dp7v61cwd6jgakk6wfps3s"; +python3Packages.buildPythonApplication rec { + inherit pname; + version = "2.3.0"; + src = fetchFromGitHub { + owner = "schrodinger"; + repo = "pymol-open-source"; + rev = "v${version}"; + sha256 = "175cqi6gfmvv49i3ws19254m7ljs53fy6y82fm1ywshq2h2c93jh"; }; - buildInputs = [ python3Packages.numpy glew freeglut libpng libxml2 tk freetype msgpack ]; + buildInputs = [ python3Packages.numpy glew glm freeglut libpng libxml2 tk freetype msgpack ]; NIX_CFLAGS_COMPILE = "-I ${libxml2.dev}/include/libxml2"; + hardeningDisable = [ "format" ]; + + setupPyBuildFlags = [ "--glut" ]; installPhase = '' - python setup.py install --home=$out - cp -r ${desktopItem}/share/ $out/ + python setup.py install --home="$out" runHook postInstall ''; postInstall = with python3Packages; '' wrapProgram $out/bin/pymol \ - --prefix PYTHONPATH : ${makeSearchPathOutput "lib" python3.sitePackages [ Pmw tkinter ]} + --prefix PYTHONPATH : ${lib.makeSearchPathOutput "lib" python3.sitePackages [ Pmw tkinter ]} + + mkdir -p "$out/share/icons/" + ln -s ../../lib/python/pymol/pymol_path/data/pymol/icons/icon2.svg "$out/share/icons/pymol.svg" + cp -r "${desktopItem}/share/applications/" "$out/share/" ''; - meta = { + meta = with lib; { description = description; homepage = https://www.pymol.org/; - license = licenses.psfl; - broken = true; + license = licenses.mit; + maintainers = with maintainers; [ samlich ]; }; } |