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| author | Alyssa Ross <hi@alyssa.is> | 2021-04-28 14:39:00 +0000 |
|---|---|---|
| committer | Alyssa Ross <hi@alyssa.is> | 2021-06-10 08:52:36 +0000 |
| commit | 693e64ef7421374338ddb1dc12b9573feec75972 (patch) | |
| tree | 2526ac075d248699c35d63e04499890ee4381f5f /nixpkgs/pkgs/applications/science/biology | |
| parent | 7014df2256694d97093d6f2bb1db340d346dea88 (diff) | |
| parent | 8e4fe32876ca15e3d5eb3ecd3ca0b224417f5f17 (diff) | |
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Merge commit '8e4fe32876ca15e3d5eb3ecd3ca0b224417f5f17'
Diffstat (limited to 'nixpkgs/pkgs/applications/science/biology')
| -rw-r--r-- | nixpkgs/pkgs/applications/science/biology/MACS2/default.nix | 25 | ||||
| -rw-r--r-- | nixpkgs/pkgs/applications/science/biology/octopus/default.nix | 4 |
2 files changed, 27 insertions, 2 deletions
diff --git a/nixpkgs/pkgs/applications/science/biology/MACS2/default.nix b/nixpkgs/pkgs/applications/science/biology/MACS2/default.nix new file mode 100644 index 000000000000..cc398608ce52 --- /dev/null +++ b/nixpkgs/pkgs/applications/science/biology/MACS2/default.nix @@ -0,0 +1,25 @@ +{ lib, python3, fetchurl }: + +python3.pkgs.buildPythonPackage rec { + pname = "MACS2"; + version = "2.2.7.1"; + + src = python3.pkgs.fetchPypi { + inherit pname version; + sha256 = "1rcxj943kgzs746f5jrb72x1cp4v50rk3qmad0m99a02vndscb5d"; + }; + + propagatedBuildInputs = with python3.pkgs; [ numpy ]; + + # To prevent ERROR: diffpeak_cmd (unittest.loader._FailedTest) for obsolete + # function (ImportError: Failed to import test module: diffpeak_cmd) + doCheck = false; + pythonImportsCheck = [ "MACS2" ]; + + meta = with lib; { + description = "Model-based Analysis for ChIP-Seq"; + license = licenses.bsd3; + maintainers = with maintainers; [ gschwartz ]; + platforms = platforms.linux; + }; +} diff --git a/nixpkgs/pkgs/applications/science/biology/octopus/default.nix b/nixpkgs/pkgs/applications/science/biology/octopus/default.nix index 0ef48ec6413b..b61a0764f2c2 100644 --- a/nixpkgs/pkgs/applications/science/biology/octopus/default.nix +++ b/nixpkgs/pkgs/applications/science/biology/octopus/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "octopus"; - version = "0.7.1"; + version = "0.7.3"; src = fetchFromGitHub { owner = "luntergroup"; repo = "octopus"; rev = "v${version}"; - sha256 = "sha256-TZ57uKTZ87FWpLNGPY8kbML1EDM8fnEFbXR+Z3dmiao="; + sha256 = "sha256-sPOBZ0YrEdjMNVye/xwqwA5IpsLy2jWN3sm/ce1fLg4="; }; patches = [ |