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author | Alyssa Ross <hi@alyssa.is> | 2019-08-31 11:57:05 +0000 |
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committer | Alyssa Ross <hi@alyssa.is> | 2019-09-16 22:04:28 +0000 |
commit | a0842e8b20cbe1ed717b72775428d1f8fc047fa4 (patch) | |
tree | b86d0614a477f7e092d626d59b888d085aaca400 /nixpkgs/pkgs/applications/science/biology/sortmerna/default.nix | |
parent | c36b32d476b520ed0d2a37cd0973f98583d6dc7c (diff) | |
parent | 8d1510abfb592339e13ce8f6db6f29c1f8b72924 (diff) | |
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Merge commit '8d1510abfb592339e13ce8f6db6f29c1f8b72924'
Diffstat (limited to 'nixpkgs/pkgs/applications/science/biology/sortmerna/default.nix')
-rw-r--r-- | nixpkgs/pkgs/applications/science/biology/sortmerna/default.nix | 38 |
1 files changed, 38 insertions, 0 deletions
diff --git a/nixpkgs/pkgs/applications/science/biology/sortmerna/default.nix b/nixpkgs/pkgs/applications/science/biology/sortmerna/default.nix new file mode 100644 index 000000000000..4adce4461ede --- /dev/null +++ b/nixpkgs/pkgs/applications/science/biology/sortmerna/default.nix @@ -0,0 +1,38 @@ +{ stdenv, cmake, rocksdb, rapidjson, pkgconfig, fetchFromGitHub, fetchpatch, zlib }: + +stdenv.mkDerivation rec { + pname = "sortmerna"; + version = "3.0.3"; + + src = fetchFromGitHub { + repo = pname; + owner = "biocore"; + rev = "v${version}"; + sha256 = "0zx5fbzyr8wdr0zwphp8hhcn1xz43s5lg2ag4py5sv0pv5l1jh76"; + }; + + patches = [ + (fetchpatch { + name = "CMakeInstallPrefix.patch"; + url = "https://github.com/biocore/sortmerna/commit/4d36d620a3207e26cf3f588d4ec39889ea21eb79.patch"; + sha256 = "0hc3jwdr6ylbyigg52q8islqc0mb1k8rrjadvjfqaxnili099apd"; + }) + ]; + + nativeBuildInputs = [ cmake rapidjson pkgconfig ]; + buildInputs = [ zlib rocksdb rapidjson ]; + + cmakeFlags = [ + "-DCMAKE_BUILD_TYPE=Release" + "-DROCKSDB_HOME=${rocksdb}" + "-DRAPIDJSON_HOME=${rapidjson}" + ]; + + meta = with stdenv.lib; { + description = "Tools for filtering, mapping, and OTU-picking from shotgun genomics data"; + license = licenses.lgpl3; + platforms = platforms.x86_64; + homepage = https://bioinfo.lifl.fr/RNA/sortmerna/; + maintainers = with maintainers; [ luispedro ]; + }; +} |