Add 'nixpkgs/' from commit 'abf060725d7614bd3b9f96764262dfbc2f9c2199'

git-subtree-dir: nixpkgs
git-subtree-mainline: 4e31070265257dc67d120c27e0f75c2344fdfa9a
git-subtree-split: abf060725d7614bd3b9f96764262dfbc2f9c2199

1 files changed, 41 insertions, 0 deletions

diff --git a/nixpkgs/pkgs/applications/science/biology/raxml/default.nix b/nixpkgs/pkgs/applications/science/biology/raxml/default.nix
new file mode 100644
index 000000000000..140f70323194
--- /dev/null
+++ b/nixpkgs/pkgs/applications/science/biology/raxml/default.nix
@@ -0,0 +1,41 @@
+{ stdenv
+, fetchFromGitHub
+, pkgs
+, mpi ? false
+}:
+
+stdenv.mkDerivation rec {
+  pname = "RAxML";
+  version = "8.2.12";
+  name = "${pname}-${version}";
+
+  src = fetchFromGitHub {
+    owner = "stamatak";
+    repo = "standard-${pname}";
+    rev = "v${version}";
+    sha256 = "1jqjzhch0rips0vp04prvb8vmc20c5pdmsqn8knadcf91yy859fh";
+  };
+
+  buildInputs = if mpi then [ pkgs.openmpi ] else [];
+
+  # TODO darwin, AVX and AVX2 makefile targets
+  buildPhase = if mpi then ''
+      make -f Makefile.MPI.gcc
+    '' else ''
+      make -f Makefile.SSE3.PTHREADS.gcc
+    '';
+
+  installPhase = if mpi then ''
+    mkdir -p $out/bin && cp raxmlHPC-MPI $out/bin
+  '' else ''
+    mkdir -p $out/bin && cp raxmlHPC-PTHREADS-SSE3 $out/bin
+  '';
+
+  meta = with stdenv.lib; {
+    description = "A tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies";
+    license = licenses.gpl3;
+    homepage = https://sco.h-its.org/exelixis/web/software/raxml/;
+    maintainers = [ maintainers.unode ];
+    platforms = [ "i686-linux" "x86_64-linux" ];
+  };
+}