diff options
| author | Jason Daniel Augustine Gilliland <jdagilliland@gmail.com> | 2016-12-17 00:36:53 -0500 |
|---|---|---|
| committer | zimbatm <zimbatm@zimbatm.com> | 2016-12-22 14:10:37 +0000 |
| commit | 59ca5d213f99d10f9cc187763876b5c4008bac7d (patch) | |
| tree | de014a8a7f819a97f663c924c6ee56a212c86262 | |
| parent | af2ecc27fccc7f1e3ed3081f79f2894dde6b8f30 (diff) | |
| download | nixlib-59ca5d213f99d10f9cc187763876b5c4008bac7d.tar nixlib-59ca5d213f99d10f9cc187763876b5c4008bac7d.tar.gz nixlib-59ca5d213f99d10f9cc187763876b5c4008bac7d.tar.bz2 nixlib-59ca5d213f99d10f9cc187763876b5c4008bac7d.tar.lz nixlib-59ca5d213f99d10f9cc187763876b5c4008bac7d.tar.xz nixlib-59ca5d213f99d10f9cc187763876b5c4008bac7d.tar.zst nixlib-59ca5d213f99d10f9cc187763876b5c4008bac7d.zip | |
freebayes: init at 1.1.0
Signed-off-by: zimbatm <zimbatm@zimbatm.com>
| -rw-r--r-- | lib/maintainers.nix | 1 | ||||
| -rw-r--r-- | pkgs/applications/science/biology/freebayes/builder.sh | 11 | ||||
| -rw-r--r-- | pkgs/applications/science/biology/freebayes/default.nix | 27 | ||||
| -rw-r--r-- | pkgs/top-level/all-packages.nix | 2 |
4 files changed, 41 insertions, 0 deletions
diff --git a/lib/maintainers.nix b/lib/maintainers.nix index f88cd1212fb0..7ed8ae953bc0 100644 --- a/lib/maintainers.nix +++ b/lib/maintainers.nix @@ -206,6 +206,7 @@ jb55 = "William Casarin <bill@casarin.me>"; jbedo = "Justin Bedő <cu@cua0.org>"; jcumming = "Jack Cummings <jack@mudshark.org>"; + jdagilliland = "Jason Gilliland <jdagilliland@gmail.com>"; jefdaj = "Jeffrey David Johnson <jefdaj@gmail.com>"; jerith666 = "Matt McHenry <github@matt.mchenryfamily.org>"; jfb = "James Felix Black <james@yamtime.com>"; diff --git a/pkgs/applications/science/biology/freebayes/builder.sh b/pkgs/applications/science/biology/freebayes/builder.sh new file mode 100644 index 000000000000..a9f56e77d7e3 --- /dev/null +++ b/pkgs/applications/science/biology/freebayes/builder.sh @@ -0,0 +1,11 @@ +source $stdenv/setup + +unpackPhase + +cd freebayes-* + +make + +mkdir -p $out/bin +cp bin/freebayes bin/bamleftalign $out/bin +cp scripts/* $out/bin diff --git a/pkgs/applications/science/biology/freebayes/default.nix b/pkgs/applications/science/biology/freebayes/default.nix new file mode 100644 index 000000000000..ef0da619b25a --- /dev/null +++ b/pkgs/applications/science/biology/freebayes/default.nix @@ -0,0 +1,27 @@ +{ stdenv, fetchFromGitHub, cmake, gcc, zlib}: + +stdenv.mkDerivation rec { + name = "freebayes-${version}"; + version = "1.1.0"; + + src = fetchFromGitHub { + name = "freebayes-${version}-src"; + owner = "ekg"; + repo = "freebayes"; + rev = "refs/tags/v${version}"; + sha256 = "0xb8aicb36w9mfs1gq1x7mcp3p82kl7i61d162hfncqzg2npg8rr"; + fetchSubmodules = true; + }; + + buildInputs = [ cmake gcc zlib ]; + + builder = ./builder.sh; + + meta = with stdenv.lib; { + description = "Bayesian haplotype-based polymorphism discovery and genotyping"; + license = licenses.mit; + homepage = https://github.com/ekg/freebayes; + maintainers = with maintainers; [ jdagilliland ]; + platforms = [ "x86_64-linux" ]; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 4261200ad6c7..82c131b901a0 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -12994,6 +12994,8 @@ in fossil = callPackage ../applications/version-management/fossil { }; + freebayes = callPackage ../applications/science/biology/freebayes { }; + freewheeling = callPackage ../applications/audio/freewheeling { }; fribid = callPackage ../applications/networking/browsers/mozilla-plugins/fribid { }; |