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| author | Jeffrey David Johnson <jefdaj@gmail.com> | 2016-03-31 11:36:39 -0700 |
|---|---|---|
| committer | Jeffrey David Johnson <jefdaj@gmail.com> | 2016-03-31 11:36:39 -0700 |
| commit | 3c0fb5ede1bb11f20fa607cb8c6833cd1e71dfdb (patch) | |
| tree | cf8a25575263b4d75453d6df361fb7f365c21e8f | |
| parent | c9934bbcb8de5143fa1bd72d05558a822178a833 (diff) | |
| download | nixlib-3c0fb5ede1bb11f20fa607cb8c6833cd1e71dfdb.tar nixlib-3c0fb5ede1bb11f20fa607cb8c6833cd1e71dfdb.tar.gz nixlib-3c0fb5ede1bb11f20fa607cb8c6833cd1e71dfdb.tar.bz2 nixlib-3c0fb5ede1bb11f20fa607cb8c6833cd1e71dfdb.tar.lz nixlib-3c0fb5ede1bb11f20fa607cb8c6833cd1e71dfdb.tar.xz nixlib-3c0fb5ede1bb11f20fa607cb8c6833cd1e71dfdb.tar.zst nixlib-3c0fb5ede1bb11f20fa607cb8c6833cd1e71dfdb.zip | |
work on fixing up bioconductor packages
| -rw-r--r-- | pkgs/development/r-modules/default.nix | 6 |
1 files changed, 2 insertions, 4 deletions
diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 931692709f78..d339eaccf750 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -369,9 +369,7 @@ let ShortRead = [ pkgs.zlib ]; oligo = [ pkgs.zlib ]; gmapR = [ pkgs.zlib ]; - ncdf = [ pkgs.netcdf ]; Rsubread = [ pkgs.zlib ]; - SemiCompRisks = [ pkgs.gsl_1 ]; XVector = [ pkgs.zlib ]; Rsamtools = [ pkgs.zlib ]; rtracklayer = [ pkgs.zlib ]; @@ -698,6 +696,8 @@ let # Packages which cannot be installed due to lack of dependencies or other reasons. brokenPackages = [ + "spoccutils" # depends on broken package spocc + "mapr" # depends on broken package spocc "vmsbase" # broken build "vcfR" # broken build "strataG" # broken build @@ -1084,14 +1084,12 @@ let "rjags" # broken build "proteoQC" # depends on broken package rTANDEM "PGA" # depends on broken package rTANDEM - "cudatoolkit" # broken build "MBESS" # depends on broken package OpenMx "IONiseR" # depends on broken package rhdf5 "DOQTL" # depends on broken package rhdf5 "DmelSGI" # depends on broken package rhdf5 "flowDiv" # depends on broken package ncdfFlow "ChemmineDrugs" # depends on broken package ChemmineR - "nlopt" # broken build "stpm" # depends on broken package nloptr "sjmisc" # depends on broken package nloptr "rstanarm" # depends on broken package nloptr |