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| author | Ben Darwin <bcdarwin@gmail.com> | 2020-02-07 11:57:12 -0500 |
|---|---|---|
| committer | Frederik Rietdijk <freddyrietdijk@fridh.nl> | 2020-02-10 19:53:25 +0100 |
| commit | 39f0e3b32b5b4aa5ec463c21fa3488f677fac18e (patch) | |
| tree | 9088bfabed12d079591247ebc93219d05c692524 | |
| parent | bcad453bcfdc85048632054b2b1dfa3077b1953f (diff) | |
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minc_tools: enable building conversion tools
| -rw-r--r-- | pkgs/applications/science/biology/minc-tools/default.nix | 11 | ||||
| -rw-r--r-- | pkgs/top-level/all-packages.nix | 4 |
2 files changed, 11 insertions, 4 deletions
diff --git a/pkgs/applications/science/biology/minc-tools/default.nix b/pkgs/applications/science/biology/minc-tools/default.nix index 87d5ceaa125e..4c8b768a56a9 100644 --- a/pkgs/applications/science/biology/minc-tools/default.nix +++ b/pkgs/applications/science/biology/minc-tools/default.nix @@ -1,4 +1,5 @@ -{ stdenv, fetchFromGitHub, cmake, makeWrapper, flex, bison, perlPackages, libminc, libjpeg, zlib }: +{ stdenv, fetchFromGitHub, cmake, makeWrapper, flex, bison, perl, TextFormat, + libminc, libjpeg, nifticlib, zlib }: stdenv.mkDerivation rec { pname = "minc-tools"; @@ -15,9 +16,13 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake flex bison makeWrapper ]; buildInputs = [ libminc libjpeg zlib ]; - propagatedBuildInputs = with perlPackages; [ perl TextFormat ]; + propagatedBuildInputs = [ perl TextFormat ]; - cmakeFlags = [ "-DLIBMINC_DIR=${libminc}/lib/" ]; + cmakeFlags = [ "-DLIBMINC_DIR=${libminc}/lib/" + "-DZNZ_INCLUDE_DIR=${nifticlib}/include/" + "-DZNZ_LIBRARY=${nifticlib}/lib/libznz.a" + "-DNIFTI_INCLUDE_DIR=${nifticlib}/include/nifti/" + "-DNIFTI_LIBRARY=${nifticlib}/lib/libniftiio.a" ]; postFixup = '' for prog in minccomplete minchistory mincpik; do diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index b325f77a87af..85891e27c516 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -23884,7 +23884,9 @@ in messer-slim = callPackage ../applications/science/biology/messer-slim { }; - minc_tools = callPackage ../applications/science/biology/minc-tools { }; + minc_tools = callPackage ../applications/science/biology/minc-tools { + inherit (perlPackages) perl TextFormat; + }; minc_widgets = callPackage ../applications/science/biology/minc-widgets { }; |