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| author | Orivej Desh <orivej@gmx.fr> | 2017-10-01 07:30:56 +0000 |
|---|---|---|
| committer | Orivej Desh <orivej@gmx.fr> | 2017-10-01 07:36:30 +0000 |
| commit | 09a53969828ead5dd6a231e5db3b4a765fca47d3 (patch) | |
| tree | 05b1f2bc6ef84109b552f8a16a7e1b082731912c | |
| parent | 0acf94bb9fa466d106e8e63884304d5ccdb37a6e (diff) | |
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samtools: fix up
| -rw-r--r-- | pkgs/applications/science/biology/samtools/default.nix | 17 |
1 files changed, 8 insertions, 9 deletions
diff --git a/pkgs/applications/science/biology/samtools/default.nix b/pkgs/applications/science/biology/samtools/default.nix index 0f1f4692eb71..640f32671bbd 100644 --- a/pkgs/applications/science/biology/samtools/default.nix +++ b/pkgs/applications/science/biology/samtools/default.nix @@ -3,29 +3,28 @@ stdenv.mkDerivation rec { name = "${pname}-${version}"; pname = "samtools"; - major = "1.6"; - version = "${major}.0"; + version = "1.6"; src = fetchurl { - url = "https://github.com/samtools/samtools/releases/download/${major}/samtools-${major}.tar.bz2"; + url = "https://github.com/samtools/samtools/releases/download/${version}/${name}.tar.bz2"; sha256 = "17p4vdj2j2qr3b2c0v4100h6cg4jj3zrb4dmdnd9d9aqs74d4p7f"; }; - buildInputs = [ zlib ncurses ]; + nativeBuildInputs = [ perl ]; - propagatedBuildInputs = [ htslib ]; + buildInputs = [ zlib ncurses htslib ]; configureFlags = [ "--with-htslib=${htslib}" ] ++ stdenv.lib.optional (ncurses == null) "--without-curses"; + preCheck = '' + patchShebangs test/ + ''; + enableParallelBuilding = true; doCheck = true; - preCheck = '' - sed -ie 's|/usr/bin/\(env[[:space:]]\)\{0,1\}perl|${perl}/bin/perl|' test/test.pl - ''; - meta = with stdenv.lib; { description = "Tools for manipulating SAM/BAM/CRAM format"; license = licenses.mit; |