1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
|
{ lib
, arviz
, buildPythonPackage
, cachetools
, cloudpickle
, fastprogress
, fetchFromGitHub
, numpy
, pytensor
, pythonOlder
, scipy
, typing-extensions
}:
buildPythonPackage rec {
pname = "pymc";
version = "5.10.3";
pyproject = true;
disabled = pythonOlder "3.9";
src = fetchFromGitHub {
owner = "pymc-devs";
repo = "pymc";
rev = "refs/tags/v${version}";
hash = "sha256-3y8ORRyWjr4KT818ktXrgX4jB0Rkrnf4DQaNkyXGrts=";
};
propagatedBuildInputs = [
arviz
cachetools
cloudpickle
fastprogress
numpy
pytensor
scipy
typing-extensions
];
postPatch = ''
substituteInPlace setup.py \
--replace ', "pytest-cov"' ""
'';
# The test suite is computationally intensive and test failures are not
# indicative for package usability hence tests are disabled by default.
doCheck = false;
pythonImportsCheck = [
"pymc"
];
meta = with lib; {
description = "Bayesian estimation, particularly using Markov chain Monte Carlo (MCMC)";
homepage = "https://github.com/pymc-devs/pymc3";
changelog = "https://github.com/pymc-devs/pymc/releases/tag/v${version}";
license = licenses.asl20;
maintainers = with maintainers; [ nidabdella ];
};
}
|