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{ lib
, fetchFromGitHub
, buildPythonPackage
, pythonOlder
, numpy
, cython
, zlib
, python-lzo
, nose
}:
buildPythonPackage rec {
pname = "bx-python";
version = "0.11.0";
format = "setuptools";
disabled = pythonOlder "3.8";
src = fetchFromGitHub {
owner = "bxlab";
repo = "bx-python";
rev = "refs/tags/v${version}";
hash = "sha256-evhxh/cCZFSK6EgMu7fC9/ZrPd2S1fZz89ItGYrHQck=";
};
nativeBuildInputs = [
cython
];
buildInputs = [
zlib
];
propagatedBuildInputs = [
numpy
python-lzo
];
nativeCheckInputs = [
nose
];
postInstall = ''
cp -r scripts/* $out/bin
# This is a small hack; the test suite uses the scripts which need to
# be patched. Linking the patched scripts in $out back to the
# working directory allows the tests to run
rm -rf scripts
ln -s $out/bin scripts
'';
meta = with lib; {
description = "Tools for manipulating biological data, particularly multiple sequence alignments";
homepage = "https://github.com/bxlab/bx-python";
changelog = "https://github.com/bxlab/bx-python/releases/tag/v${version}";
license = licenses.mit;
maintainers = with maintainers; [ jbedo ];
platforms = [ "x86_64-linux" ];
};
}
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