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{ lib
, stdenv
, autoreconfHook
, fetchFromGitHub
, bzip2
, xz
, zlib
}:
stdenv.mkDerivation (finalAttrs: {
# Same name as the Debian library
pname = "libstaden-read";
version = "1.15.0";
src = fetchFromGitHub {
owner = "jkbonfield";
repo = "io_lib";
rev = "io_lib-" + builtins.replaceStrings ["."] ["-"] finalAttrs.version;
fetchSubmodules = true;
hash = "sha256-2Dlx+MXmqar81/Xmf0oE+6lWX461EDYijiZsZf/VD28=";
};
patches = [
# Needed so that the lib can be detected
./libstaden-install-config-header.patch
];
buildInputs = [ bzip2 xz zlib ];
nativeBuildInputs = [ autoreconfHook ];
# autoreconfHook does not descend into htscodecs folder
preAutoreconf = ''
pushd ./htscodecs
autoreconf --install --force --verbose
pushd
'';
meta = {
description = "C library for reading/writing various DNA sequence formats";
homepage = "https://staden.sourceforge.net";
downloadPage = "https://github.com/jkbonfield/io_lib/releases";
changelog = "https://github.com/jkbonfield/io_lib/blob/${finalAttrs.src.rev}/CHANGES";
license = with lib.licenses; [ bsd3 free ];
platforms = lib.platforms.all;
maintainers = [ lib.maintainers.kupac ];
};
})
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