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{ stdenv
, buildPythonPackage
, fetchPypi
, isPy3k
# python dependencies
, click
, configparser ? null
, dateutil
, funcsigs
, future
, futures
, mock
, networkx
, nibabel
, numpy
, packaging
, prov
, psutil
, pydot
, pytest
, scipy
, simplejson
, traits
, xvfbwrapper
, pytestcov
, codecov
# other dependencies
, which
, bash
, glibcLocales
}:
assert !isPy3k -> configparser != null;
buildPythonPackage rec {
pname = "nipype";
version = "1.1.2";
src = fetchPypi {
inherit pname version;
sha256 = "f2fe29bf863cb643bd5c8d2bdeaaf488308c293c9fb9913bc7a9504dc3bf8db6";
};
# see https://github.com/nipy/nipype/issues/2240
patches = [ ./prov-version.patch ];
postPatch = ''
substituteInPlace nipype/interfaces/base/tests/test_core.py \
--replace "/usr/bin/env bash" "${bash}/bin/bash"
rm pytest.ini
'';
propagatedBuildInputs = [
click
dateutil
funcsigs
future
futures
networkx
nibabel
numpy
packaging
prov
psutil
pydot
scipy
simplejson
traits
xvfbwrapper
] ++ stdenv.lib.optional (!isPy3k) [
configparser
];
checkInputs = [ pytest mock pytestcov codecov which glibcLocales ];
checkPhase = ''
LC_ALL="en_US.UTF-8" py.test -v --doctest-modules nipype
'';
meta = with stdenv.lib; {
homepage = http://nipy.org/nipype/;
description = "Neuroimaging in Python: Pipelines and Interfaces";
license = licenses.bsd3;
maintainers = with maintainers; [ ashgillman ];
};
}
|