summary refs log tree commit diff
path: root/pkgs/applications/science/math/sage/patches/arb-2.13.0.patch
blob: a20f1670a256a85980af1ae5024de5bc4cc4542c (plain) (blame)
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commit c885927e25b29bd23869e02379c2918da430323e
Author: Timo Kaufmann <timokau@zoho.com>
Date:   Sat Jun 30 02:26:15 2018 +0200

diff --git a/build/pkgs/arb/checksums.ini b/build/pkgs/arb/checksums.ini
index 1924ee03c3..9323b97391 100644
--- a/build/pkgs/arb/checksums.ini
+++ b/build/pkgs/arb/checksums.ini
@@ -1,4 +1,4 @@
 tarball=arb-VERSION.tar.gz
-sha1=27476d0529e48a07d92da90bd0fb80dd18f443e3
-md5=733285d9705d10b8024e551ffa81952f
-cksum=2391183744
+sha1=44eda7bf8eaa666c45b1fc2c1b5bd08756d94b58
+md5=fa24de9fffe4394fb6a7a6792e2ecc5f
+cksum=3689220688
diff --git a/build/pkgs/arb/package-version.txt b/build/pkgs/arb/package-version.txt
index c8810e9bdb..fb2c0766b7 100644
--- a/build/pkgs/arb/package-version.txt
+++ b/build/pkgs/arb/package-version.txt
@@ -1 +1 @@
-2.12.0.p0
+2.13.0
diff --git a/build/pkgs/arb/patches/arb-pie-hardening-conflict.patch b/build/pkgs/arb/patches/arb-pie-hardening-conflict.patch
deleted file mode 100644
index 3e5c0e708b..0000000000
--- a/build/pkgs/arb/patches/arb-pie-hardening-conflict.patch
+++ /dev/null
@@ -1,17 +0,0 @@
-In newer binutils, ld options -r and -pie conflict.
-Patch due to Jörg-Volker Peetz
-(source : https://groups.google.com/d/msg/sage-devel/TduebNoZuBE/sEULolL0BQAJ),
-packaged by Emmanuel Charpentier
-
-diff -ru arb-2.8.1-orig/Makefile.subdirs arb-2.8.1-new/Makefile.subdirs
---- arb-2.8.1-orig/Makefile.subdirs	2015-12-31 17:30:01.000000000 +0100
-+++ arb-2.8.1-new/Makefile.subdirs	2016-11-07 18:50:34.540051779 +0100
-@@ -52,7 +52,7 @@
- 	$(QUIET_CC) $(CC) $(CFLAGS) $(INCS) -c $< -o $@ -MMD -MP -MF "$(BUILD_DIR)/$(MOD_DIR)_$*.d" -MT "$(BUILD_DIR)/$(MOD_DIR)_$*.d" -MT "$@"
- 
- $(MOD_LOBJ): $(LOBJS)
--	$(QUIET_CC) $(CC) $(ABI_FLAG) -Wl,-r $^ -o $@ -nostdlib
-+	$(QUIET_CC) $(CC) $(ABI_FLAG) -r $^ -o $@ -nostdlib
- 
- -include $(LOBJS:.lo=.d)
- 
diff --git a/src/sage/rings/complex_arb.pyx b/src/sage/rings/complex_arb.pyx
index 70d51e655a..00e7caea2c 100644
--- a/src/sage/rings/complex_arb.pyx
+++ b/src/sage/rings/complex_arb.pyx
@@ -857,14 +857,14 @@ class ComplexBallField(UniqueRepresentation, Field):
             [0.500000000000000 +/- 2.09e-16]
 
             sage: CBF.integral(lambda x, _: x.gamma(), 1 - CBF(i), 1 + CBF(i))
-            [+/- 3.95e-15] + [1.5723926694981 +/- 4.53e-14]*I
+            [+/- 4...e-15] + [1.5723926694981 +/- 4...e-14]*I
 
             sage: C = ComplexBallField(100)
             sage: C.integral(lambda x, _: x.cos() * x.sin(), 0, 1)
             [0.35403670913678559674939205737 +/- 8.89e-30]
 
             sage: CBF.integral(lambda x, _: (x + x.exp()).sin(), 0, 8)
-            [0.34740017266 +/- 6.36e-12]
+            [0.34740017266 +/- 6...e-12]
 
             sage: C = ComplexBallField(2000)
             sage: C.integral(lambda x, _: (x + x.exp()).sin(), 0, 8) # long time
@@ -879,14 +879,14 @@ class ComplexBallField(UniqueRepresentation, Field):
             ....:     else:
             ....:         return z.sqrt()
             sage: CBF.integral(my_sqrt, -1 + CBF(i), -1 - CBF(i))
-            [+/- 1.14e-14] + [-0.4752076627926 +/- 5.18e-14]*I
+            [+/- 1.14e-14] + [-0.4752076627926 +/- 5...e-14]*I
 
         Note, though, that proper handling of the ``analytic`` flag is required
         even when the path does not touch the branch cut::
 
             sage: correct = CBF.integral(my_sqrt, 1, 2); correct
             [1.21895141649746 +/- 3.73e-15]
-            sage: RBF(integral(sqrt(x), x, 1, 2))
+            sage: RBF(integral(sqrt(x), x, 1, 2))  # long time
             [1.21895141649746 +/- 1.79e-15]
             sage: wrong = CBF.integral(lambda z, _: z.sqrt(), 1, 2) # WRONG!
             sage: correct - wrong
@@ -915,9 +915,9 @@ class ComplexBallField(UniqueRepresentation, Field):
         the integrand is unbounded::
 
             sage: CBF.integral(lambda x, _: 1/x, -1, 1)
-            [+/- inf] + [+/- inf]*I
+            nan + nan*I
             sage: CBF.integral(lambda x, _: 1/x, 10^-1000, 1)
-            [+/- inf] + [+/- inf]*I
+            nan + nan*I
             sage: CBF.integral(lambda x, _: 1/x, 10^-1000, 1, abs_tol=1e-10)
             [2302.5850930 +/- 1.26e-8]
 
@@ -928,14 +928,15 @@ class ComplexBallField(UniqueRepresentation, Field):
             sage: CBF.integral(lambda x, _: x.exp(), -1020, -1010, abs_tol=1e-450)
             [2.304377150950e-439 +/- 9.74e-452]
             sage: CBF.integral(lambda x, _: x.exp(), -1020, -1010, abs_tol=0)
-            [2.304377150949e-439 +/- 7.53e-452]
-            sage: CBF.integral(lambda x, _: x.exp(), -1020, -1010, rel_tol=1e-4, abs_tol=0)
-            [2.30438e-439 +/- 3.90e-445]
+            [2.304377150950e-439 +/- 7...e-452]
+            sage: CBF.integral(lambda x, _: x.exp(), -1020, -1010, rel_tol=1e-2, abs_tol=0)
+            [2.30438e-439 +/- 5.94e-445]
 
-            sage: CBF.integral(lambda x, _: x*(1/x).sin(), 0, 1)
-            [+/- 0.644]
-            sage: CBF.integral(lambda x, _: x*(1/x).sin(), 0, 1, use_heap=True)
-            [0.3785300 +/- 4.32e-8]
+            sage: epsi = CBF(1e-10)
+            sage: CBF.integral(lambda x, _: x*(1/x).sin(), epsi, 1)
+            [0.38 +/- 8.54e-3]
+            sage: CBF.integral(lambda x, _: x*(1/x).sin(), epsi, 1, use_heap=True)
+            [0.37853002 +/- 8.73e-9]
 
         ALGORITHM:
 
@@ -951,12 +952,12 @@ class ComplexBallField(UniqueRepresentation, Field):
 
             sage: i = QuadraticField(-1).gen()
             sage: CBF.integral(lambda x, _: (1 + i*x).gamma(), -1, 1)
-            [1.5723926694981 +/- 4.53e-14] + [+/- 3.95e-15]*I
+            [1.5723926694981 +/- 4...e-14] + [+/- 4...e-15]*I
 
-            sage: ComplexBallField(10000).integral(lambda x, _: x.sin(), 0, 1, rel_tol=1e-400)
-            [0.459... +/- ...e-4...]
+            sage: ComplexBallField(10000).integral(lambda x, _: x.sin(), 0, 1, rel_tol=1e-300)
+            [0.459... +/- ...e-3...]
             sage: CBF.integral(lambda x, _: x.sin(), 0, 100, rel_tol=10)
-            [+/- 7.61]
+            [0.138 +/- 5.53e-4]
 
             sage: ComplexBallField(10000).integral(lambda x, _: x.sin(), 0, 1, abs_tol=1e-400)
             [0.459697... +/- ...e-4...]
@@ -2389,9 +2390,9 @@ cdef class ComplexBall(RingElement):
             sage: ~CBF(i/3)
             [-3.00000000000000 +/- 9.44e-16]*I
             sage: ~CBF(0)
-            [+/- inf]
+            nan
             sage: ~CBF(RIF(10,11))
-            [0.1 +/- 9.53e-3]
+            [0.1 +/- 9.10e-3]
         """
         cdef ComplexBall res = self._new()
         if _do_sig(prec(self)): sig_on()
@@ -2512,9 +2513,9 @@ cdef class ComplexBall(RingElement):
             sage: CBF(-2, 1)/CBF(1, 1/3)
             [-1.500000000000000 +/- 8.83e-16] + [1.500000000000000 +/- 5.64e-16]*I
             sage: CBF(2+I)/CBF(0)
-            [+/- inf] + [+/- inf]*I
+            nan + nan*I
             sage: CBF(1)/CBF(0)
-            [+/- inf]
+            nan
             sage: CBF(1)/CBF(RBF(0, 1.))
             nan
         """
@@ -2543,9 +2544,9 @@ cdef class ComplexBall(RingElement):
             sage: CBF(0)^(1/3)
             0
             sage: CBF(0)^(-1)
-            [+/- inf]
+            nan
             sage: CBF(0)^(-2)
-            [+/- inf] + [+/- inf]*I
+            nan + nan*I
 
         TESTS::
 
@@ -2656,12 +2657,12 @@ cdef class ComplexBall(RingElement):
             sage: CBF(1).rising_factorial(5)
             120.0000000000000
             sage: CBF(1/3, 1/2).rising_factorial(300)
-            [-3.87949484514e+612 +/- 5.23e+600] + [-3.52042209763e+612 +/- 5.55e+600]*I
+            [-3.87949484514e+612 +/- 5...e+600] + [-3.52042209763e+612 +/- 5...e+600]*I
 
             sage: CBF(1).rising_factorial(-1)
             nan
             sage: CBF(1).rising_factorial(2**64)
-            [+/- 2.30e+347382171305201370464]
+            [+/- 2.30e+347382171326740403407]
             sage: ComplexBallField(128)(1).rising_factorial(2**64)
             [2.343691126796861348e+347382171305201285713 +/- 4.71e+347382171305201285694]
             sage: CBF(1/2).rising_factorial(CBF(2,3))
@@ -2700,7 +2701,7 @@ cdef class ComplexBall(RingElement):
             [1.000000000000000 +/- 2.83e-16] + [-0.441271200305303 +/- 2.82e-16]*I
 
             sage: CBF('inf').log()
-            nan + nan*I
+            [+/- inf]
             sage: CBF(2).log(0)
             nan + nan*I
         """
@@ -2808,7 +2809,7 @@ cdef class ComplexBall(RingElement):
             sage: CBF(pi/2, 1/10).tan()
             [+/- 2.87e-14] + [10.0333111322540 +/- 2.36e-14]*I
             sage: CBF(pi/2).tan()
-            [+/- inf]
+            nan
         """
         cdef ComplexBall res = self._new()
         if _do_sig(prec(self)): sig_on()
@@ -2825,7 +2826,7 @@ cdef class ComplexBall(RingElement):
             sage: CBF(pi, 1/10).cot()
             [+/- 5.74e-14] + [-10.0333111322540 +/- 2.81e-14]*I
             sage: CBF(pi).cot()
-            [+/- inf]
+            nan
         """
         cdef ComplexBall res = self._new()
         if _do_sig(prec(self)): sig_on()
@@ -3211,9 +3212,9 @@ cdef class ComplexBall(RingElement):
             1.000000000000000*I
 
             sage: CBF(2+3*I).hypergeometric([1/4,1/3],[1/2])
-            [0.7871684267473 +/- 7.34e-14] + [0.2749254173721 +/- 9.23e-14]*I
+            [0.7871684267473 +/- 7...e-14] + [0.2749254173721 +/- 9...e-14]*I
             sage: CBF(2+3*I).hypergeometric([1/4,1/3],[1/2],regularized=True)
-            [0.4441122268685 +/- 3.96e-14] + [0.1551100567338 +/- 5.75e-14]*I
+            [0.4441122268685 +/- 3...e-14] + [0.1551100567338 +/- 5...e-14]*I
 
             sage: CBF(5).hypergeometric([2,3], [-5])
             nan + nan*I
@@ -4041,9 +4042,9 @@ cdef class ComplexBall(RingElement):
 
             sage: phi = CBF(1,1)
             sage: (CBF.pi()/2).elliptic_e_inc(phi)
-            [1.283840957898 +/- 3.23e-13] + [-0.5317843366915 +/- 7.79e-14]*I
+            [1.283840957898 +/- 3...e-13] + [-0.5317843366915 +/- 7...e-14]*I
             sage: phi.elliptic_e()
-            [1.2838409578982 +/- 5.90e-14] + [-0.5317843366915 +/- 3.35e-14]*I
+            [1.2838409578982 +/- 5...e-14] + [-0.5317843366915 +/- 3...e-14]*I
 
             sage: phi = CBF(2, 3/7)
             sage: (CBF.pi()/2).elliptic_e_inc(phi)
@@ -4312,8 +4313,7 @@ cdef class ComplexBall(RingElement):
             sage: CBF(10).laguerre_L(3, 2)
             [-6.666666666667 +/- 4.15e-13]
             sage: CBF(5,7).laguerre_L(CBF(2,3), CBF(1,-2))
-            [5515.315030271 +/- 4.37e-10] + [-12386.942845271 +/- 5.47e-10]*I
-
+            [5515.315030271 +/- 4...e-10] + [-12386.942845271 +/- 5...e-10]*I
         """
         cdef ComplexBall my_n = self._parent.coerce(n)
         cdef ComplexBall my_m = self._parent.coerce(m)
@@ -4357,9 +4357,9 @@ cdef class ComplexBall(RingElement):
         EXAMPLES::
 
             sage: CBF(1/2).legendre_P(5)
-            [0.08984375000000000 +/- 4.5...e-18]
+            [0.0898437500000000 +/- 7...e-17]
             sage: CBF(1,2).legendre_P(CBF(2,3), CBF(0,1))
-            [0.10996180744364 +/- 7.45e-15] + [0.14312767804055 +/- 8.38e-15]*I
+            [0.10996180744364 +/- 7.12e-15] + [0.14312767804055 +/- 8.07e-15]*I
             sage: CBF(-10).legendre_P(5, 325/100)
             [-22104403.487377 +/- 6.81e-7] + [53364750.687392 +/- 7.25e-7]*I
             sage: CBF(-10).legendre_P(5, 325/100, type=3)
@@ -4393,9 +4393,9 @@ cdef class ComplexBall(RingElement):
             sage: CBF(1/2).legendre_Q(5)
             [0.55508089057168 +/- 2.79e-15]
             sage: CBF(1,2).legendre_Q(CBF(2,3), CBF(0,1))
-            [0.167678710 +/- 4.60e-10] + [-0.161558598 +/- 7.47e-10]*I
+            [0.167678710 +/- 3.91e-10] + [-0.161558598 +/- 6.77e-10]*I
             sage: CBF(-10).legendre_Q(5, 325/100)
-            [-83825154.36008 +/- 4.94e-6] + [-34721515.80396 +/- 5.40e-6]*I
+            [-83825154.36008 +/- 5.02e-6] + [-34721515.80396 +/- 5.42e-6]*I
             sage: CBF(-10).legendre_Q(5, 325/100, type=3)
             [-4.797306921692e-6 +/- 6.82e-19] + [-4.797306921692e-6 +/- 6.57e-19]*I
 
diff --git a/src/sage/rings/polynomial/polynomial_complex_arb.pyx b/src/sage/rings/polynomial/polynomial_complex_arb.pyx
index c436d4705b..ef611a566b 100644
--- a/src/sage/rings/polynomial/polynomial_complex_arb.pyx
+++ b/src/sage/rings/polynomial/polynomial_complex_arb.pyx
@@ -543,7 +543,7 @@ cdef class Polynomial_complex_arb(Polynomial):
             sage: (1 - x/3).inverse_series_trunc(3)
             ([0.1111111111111111 +/- 5.99e-17])*x^2 + ([0.3333333333333333 +/- 7.04e-17])*x + 1.000000000000000
             sage: x.inverse_series_trunc(1)
-            [+/- inf]
+            nan
             sage: Pol(0).inverse_series_trunc(2)
             (nan + nan*I)*x + nan + nan*I
 
@@ -671,7 +671,7 @@ cdef class Polynomial_complex_arb(Polynomial):
             sage: pol._sqrt_series(2)
             ([+/- 7.51e-3] + [+/- 0.501]*I)*x + [+/- 5.01e-3] + [+/- 1.01]*I
             sage: x._sqrt_series(2)
-            ([+/- inf] + [+/- inf]*I)*x
+            (nan + nan*I)*x
         """
         cdef Polynomial_complex_arb res = self._new()
         if n < 0:
diff --git a/src/sage/rings/real_arb.pyx b/src/sage/rings/real_arb.pyx
index c9f68e38d7..76e3037a9a 100644
--- a/src/sage/rings/real_arb.pyx
+++ b/src/sage/rings/real_arb.pyx
@@ -161,7 +161,7 @@ values and should be preferred::
 
     sage: RBF(NaN) < RBF(infinity)
     False
-    sage: 1/RBF(0) <= RBF(infinity)
+    sage: RBF(0).add_error(infinity) <= RBF(infinity)
     True
 
 TESTS::
@@ -252,6 +252,8 @@ cdef void mpfi_to_arb(arb_t target, const mpfi_t source, const long precision):
         (+infinity, +infinity)
         sage: RBF(RIF(-infinity)).endpoints()
         (-infinity, -infinity)
+        sage: RBF(RIF(-infinity, infinity)).endpoints()
+        (-infinity, +infinity)
         sage: RIF(RBF(infinity)).endpoints()
         (+infinity, +infinity)
         sage: RIF(RBF(-infinity)).endpoints()
@@ -266,10 +268,11 @@ cdef void mpfi_to_arb(arb_t target, const mpfi_t source, const long precision):
     if _do_sig(precision): sig_on()
     mpfi_get_left(left, source)
     mpfi_get_right(right, source)
-    arb_set_interval_mpfr(target, left, right, precision)
-    # Work around weakness of arb_set_interval_mpfr(tgt, inf, inf)
-    if mpfr_equal_p(left, right):
-        mag_zero(arb_radref(target))
+    if mpfr_inf_p(left) and mpfr_inf_p(right) and mpfr_sgn(left) < 0 < mpfr_sgn(right):
+        # Work around a weakness of arb_set_interval_mpfr(tgt, -inf, inf)
+        arb_zero_pm_inf(target)
+    else:
+        arb_set_interval_mpfr(target, left, right, precision)
     if _do_sig(precision): sig_off()
 
     mpfr_clear(left)
@@ -649,17 +652,15 @@ class RealBallField(UniqueRepresentation, Field):
         EXAMPLES::
 
             sage: RBF.some_elements()
-            [1.000000000000000,
-            [0.3333333333333333 +/- 7.04e-17],
+            [0, 1.000000000000000, [0.3333333333333333 +/- 7.04e-17],
             [-4.733045976388941e+363922934236666733021124 +/- 3.46e+363922934236666733021108],
-            [+/- inf],
-            [+/- inf],
-            nan]
+            [+/- inf], [+/- inf], [+/- inf], nan]
         """
         import sage.symbolic.constants
-        return [self(1), self(1)/3,
+        inf = self(sage.rings.infinity.Infinity)
+        return [self(0), self(1), self(1)/3,
                 -self(2)**(Integer(2)**80),
-                self(sage.rings.infinity.Infinity), ~self(0),
+                inf, -inf, self.zero().add_error(inf),
                 self.element_class(self, sage.symbolic.constants.NotANumber())]
 
     def _sum_of_products(self, terms):
@@ -881,7 +882,7 @@ class RealBallField(UniqueRepresentation, Field):
             sage: RBF.gamma(5)
             24.00000000000000
             sage: RBF.gamma(10**20)
-            [+/- 5.92e+1956570551809674821757]
+            [+/- 5.50e+1956570552410610660600]
             sage: RBF.gamma(1/3)
             [2.678938534707747 +/- 8.99e-16]
             sage: RBF.gamma(-5)
@@ -2247,7 +2248,7 @@ cdef class RealBall(RingElement):
             sage: inf = RBF(+infinity)
             sage: other_inf = RBF(+infinity, 42.r)
             sage: neg_inf = RBF(-infinity)
-            sage: extended_line = 1/RBF(0)
+            sage: extended_line = RBF(0).add_error(infinity)
             sage: exact_nan = inf - inf
             sage: exact_nan.mid(), exact_nan.rad()
             (NaN, 0.00000000)
@@ -2659,7 +2660,7 @@ cdef class RealBall(RingElement):
             sage: ~RBF(5)
             [0.2000000000000000 +/- 4.45e-17]
             sage: ~RBF(0)
-            [+/- inf]
+            nan
             sage: RBF(RIF(-0.1,0.1))
             [+/- 0.101]
 
@@ -2739,7 +2740,7 @@ cdef class RealBall(RingElement):
             sage: RBF(pi)/RBF(e)
             [1.155727349790922 +/- 8.43e-16]
             sage: RBF(2)/RBF(0)
-            [+/- inf]
+            nan
         """
         cdef RealBall res = self._new()
         if _do_sig(prec(self)): sig_on()
@@ -2765,7 +2766,7 @@ cdef class RealBall(RingElement):
             sage: RBF(-1)^(1/3)
             nan
             sage: RBF(0)^(-1)
-            [+/- inf]
+            nan
             sage: RBF(-e)**RBF(pi)
             nan
 
@@ -3129,7 +3130,7 @@ cdef class RealBall(RingElement):
             sage: RBF(1).tan()
             [1.557407724654902 +/- 3.26e-16]
             sage: RBF(pi/2).tan()
-            [+/- inf]
+            nan
         """
         cdef RealBall res = self._new()
         if _do_sig(prec(self)): sig_on()
@@ -3146,7 +3147,7 @@ cdef class RealBall(RingElement):
             sage: RBF(1).cot()
             [0.642092615934331 +/- 4.79e-16]
             sage: RBF(pi).cot()
-            [+/- inf]
+            nan
         """
         cdef RealBall res = self._new()
         if _do_sig(prec(self)): sig_on()
@@ -3257,7 +3258,7 @@ cdef class RealBall(RingElement):
             sage: RBF(1).coth()
             [1.313035285499331 +/- 4.97e-16]
             sage: RBF(0).coth()
-            [+/- inf]
+            nan
         """
         cdef RealBall res = self._new()
         if _do_sig(prec(self)): sig_on()