{ lib , fetchPypi , fetchurl , fetchpatch , buildPythonPackage , pythonOlder , python , bzip2 , c-blosc , cython , hdf5 , lzo , numpy , numexpr , setuptools # Test inputs , pytestCheckHook }: buildPythonPackage rec { pname = "tables"; version = "3.6.1"; disabled = pythonOlder "3.5"; src = fetchPypi { inherit pname version; sha256 = "0j8vnxh2m5n0cyk9z3ndcj5n1zj5rdxgc1gb78bqlyn2lyw75aa9"; }; nativeBuildInputs = [ cython ]; buildInputs = [ bzip2 c-blosc hdf5 lzo ]; propagatedBuildInputs = [ numpy numexpr setuptools # uses pkg_resources at runtime ]; patches = [ (fetchpatch { # Needed for numpy >= 1.20.0 name = "tables-pr-862-use-lowercase-numpy-dtypes.patch"; url = "https://github.com/PyTables/PyTables/commit/93a3272b8fe754095637628b4d312400e24ae654.patch"; sha256 = "00czgxnm1dxp9763va9xw1nc7dd7kxh9hjcg9klim52519hkbhi4"; }) ]; # When doing `make distclean`, ignore docs postPatch = '' substituteInPlace Makefile --replace "src doc" "src" # Force test suite to error when unittest runner fails substituteInPlace tables/tests/test_suite.py \ --replace "return 0" "assert result.wasSuccessful(); return 0" \ --replace "return 1" "assert result.wasSuccessful(); return 1" ''; # Regenerate C code with Cython preBuild = '' make distclean ''; setupPyBuildFlags = [ "--hdf5=${lib.getDev hdf5}" "--lzo=${lib.getDev lzo}" "--bzip2=${lib.getDev bzip2}" "--blosc=${lib.getDev c-blosc}" ]; checkInputs = [ pytestCheckHook ]; preCheck = '' cd .. ''; # Runs the test suite as one single test via unittest. The whole "heavy" test suite supposedly takes ~5 hours to run. pytestFlagsArray = [ "--pyargs" "tables.tests.test_suite" ]; pythonImportsCheck = [ "tables" ]; meta = with lib; { description = "Hierarchical datasets for Python"; homepage = "https://www.pytables.org/"; license = licenses.bsd2; maintainers = with maintainers; [ drewrisinger ]; }; }