{ lib
, fetchFromGitHub
, buildPythonPackage
, cmake
, setuptools
, boost
, eigen
, gmp
, cgal  # see https://github.com/NixOS/nixpkgs/pull/94875 about cgal
, mpfr
, tbb
, numpy
, cython
, pybind11
, matplotlib
, scipy
, pytest
, enableTBB ? false
}:

buildPythonPackage rec {
  pname = "gudhi";
  version = "3.9.0";
  pyproject = true;

  src = fetchFromGitHub {
    owner = "GUDHI";
    repo = "gudhi-devel";
    rev = "tags/gudhi-release-${version}";
    fetchSubmodules = true;
    hash = "sha256-VL6RIPe8a2/cUHnHOql9e9EUMBB9QU311kMCaMZTbGI=";
  };

  nativeBuildInputs = [ cmake numpy cython pybind11 matplotlib setuptools ];
  buildInputs = [ boost eigen gmp cgal mpfr ]
    ++ lib.optionals enableTBB [ tbb ];
  propagatedBuildInputs = [ numpy scipy ];
  nativeCheckInputs = [ pytest ];

  cmakeFlags = [
    (lib.cmakeBool "WITH_GUDHI_PYTHON" true)
    (lib.cmakeFeature "Python_ADDITIONAL_VERSIONS" "3")
  ];

  prePatch = ''
    substituteInPlace src/python/CMakeLists.txt \
      --replace '"''${GUDHI_PYTHON_PATH_ENV}"' ""
  '';

  preBuild = ''
    cd src/python
  '';

  checkPhase = ''
    runHook preCheck

    rm -r gudhi
    ctest --output-on-failure

    runHook postCheck
  '';

  pythonImportsCheck = [ "gudhi" "gudhi.hera" "gudhi.point_cloud" "gudhi.clustering" ];

  meta = {
    description = "Library for Computational Topology and Topological Data Analysis (TDA)";
    homepage = "https://gudhi.inria.fr/python/latest/";
    downloadPage = "https://github.com/GUDHI/gudhi-devel";
    license = with lib.licenses; [ mit gpl3 ];
    maintainers = with lib.maintainers; [ yl3dy ];
  };
}