{ buildPythonPackage , lib , fetchFromGitHub , fetchpatch , networkx , numpy , scipy , six , pytestCheckHook }: buildPythonPackage rec { pname = "geometric"; version = "1.0.2"; format = "setuptools"; src = fetchFromGitHub { owner = "leeping"; repo = "geomeTRIC"; rev = "refs/tags/${version}"; hash = "sha256-DmrKLVQrPQDzTMxqEImnvRr3Wb2R3+hxtDVCN9XUcFM="; }; patches = [ (fetchpatch { name = "ase-is-optional"; url = "https://github.com/leeping/geomeTRIC/commit/aff6e4411980ac9cbe112a050c3a34ba7e305a43.patch"; hash = "sha256-JGGPX+JwkQ8Imgmyx+ReRTV+k6mxHYgm+Nd8WUjbFEg="; }) ]; propagatedBuildInputs = [ networkx numpy scipy six ]; preCheck = '' export OMP_NUM_THREADS=2 ''; nativeCheckInputs = [ pytestCheckHook ]; meta = with lib; { description = "Geometry optimization code for molecular structures"; mainProgram = "geometric-optimize"; homepage = "https://github.com/leeping/geomeTRIC"; license = [ licenses.bsd3 ]; maintainers = [ maintainers.markuskowa ]; }; }