{ lib , stdenv , fetchFromGitHub , cmake , enableVTK ? true , vtk , ApplicationServices , Cocoa , libiconv , enablePython ? false , python ? null , swig4 , expat , libuuid , openjpeg , zlib , pkg-config }: stdenv.mkDerivation rec { pname = "gdcm"; version = "3.0.23"; src = fetchFromGitHub { owner = "malaterre"; repo = "GDCM"; rev = "refs/tags/v${version}"; hash = "sha256-zwIPWcjTrfbdNBzAqwV6lU2l6sx+e4Yi7dprdem6AeE="; }; cmakeFlags = [ "-DGDCM_BUILD_APPLICATIONS=ON" "-DGDCM_BUILD_SHARED_LIBS=ON" "-DGDCM_BUILD_TESTING=ON" "-DGDCM_USE_SYSTEM_EXPAT=ON" "-DGDCM_USE_SYSTEM_ZLIB=ON" "-DGDCM_USE_SYSTEM_UUID=ON" "-DGDCM_USE_SYSTEM_OPENJPEG=ON" # hack around usual "`RUNTIME_DESTINATION` must not be an absolute path" issue: "-DCMAKE_INSTALL_LIBDIR=lib" "-DCMAKE_INSTALL_BINDIR=bin" "-DCMAKE_INSTALL_INCLUDEDIR=include" ] ++ lib.optionals enableVTK [ "-DGDCM_USE_VTK=ON" ] ++ lib.optionals enablePython [ "-DGDCM_WRAP_PYTHON:BOOL=ON" "-DGDCM_INSTALL_PYTHONMODULE_DIR=${placeholder "out"}/${python.sitePackages}" ]; nativeBuildInputs = [ cmake pkg-config ]; buildInputs = [ expat libuuid openjpeg zlib ] ++ lib.optionals enableVTK [ vtk ] ++ lib.optionals stdenv.isDarwin [ ApplicationServices Cocoa libiconv ] ++ lib.optionals enablePython [ swig4 python ]; disabledTests = [ # require networking: "TestEcho" "TestFind" "gdcmscu-echo-dicomserver" "gdcmscu-find-dicomserver" # seemingly ought to be be disabled when the test data submodule is not present: "TestvtkGDCMImageReader2_3" "TestSCUValidation" # errors because 3 classes not wrapped: "TestWrapPython" ] ++ lib.optionals (stdenv.isAarch64 && stdenv.isLinux) [ "TestRescaler2" ]; checkPhase = '' runHook preCheck ctest --exclude-regex '^(${lib.concatStringsSep "|" disabledTests})$' runHook postCheck ''; doCheck = true; # note that when the test data is available to the build via `fetchSubmodules = true`, # a number of additional but much slower tests are enabled meta = with lib; { description = "The grassroots cross-platform DICOM implementation"; longDescription = '' Grassroots DICOM (GDCM) is an implementation of the DICOM standard designed to be open source so that researchers may access clinical data directly. GDCM includes a file format definition and a network communications protocol, both of which should be extended to provide a full set of tools for a researcher or small medical imaging vendor to interface with an existing medical database. ''; homepage = "https://gdcm.sourceforge.net/"; license = with licenses; [ bsd3 asl20 ]; maintainers = with maintainers; [ tfmoraes ]; platforms = platforms.all; }; }