From 17611f14c2130ec0eb28068a31b9fd52d7a8ae1f Mon Sep 17 00:00:00 2001
From: Ben Darwin <bcdarwin@gmail.com>
Date: Mon, 24 Feb 2020 17:11:48 -0500
Subject: python3Packages.dipy: init at 1.1.1

---
 pkgs/development/python-modules/dipy/default.nix | 68 ++++++++++++++++++++++++
 pkgs/top-level/python-packages.nix               |  2 +
 2 files changed, 70 insertions(+)
 create mode 100644 pkgs/development/python-modules/dipy/default.nix

(limited to 'pkgs')

diff --git a/pkgs/development/python-modules/dipy/default.nix b/pkgs/development/python-modules/dipy/default.nix
new file mode 100644
index 000000000000..939f0912fe1f
--- /dev/null
+++ b/pkgs/development/python-modules/dipy/default.nix
@@ -0,0 +1,68 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, isPy27
+, packaging
+, pytest
+, cython
+, numpy
+, scipy
+, h5py
+, nibabel
+}:
+
+buildPythonPackage rec {
+  pname = "dipy";
+  version = "1.1.1";
+
+  disabled = isPy27;
+
+  src = fetchFromGitHub {
+    owner  = "dipy";
+    repo   = pname;
+    rev    = version;
+    sha256 = "08abx0f4li6ya62ilc59miw4mk6wndizahyylxhgcrpacb6ydw28";
+  };
+
+  nativeBuildInputs = [ cython packaging ];
+  propagatedBuildInputs = [
+    numpy
+    scipy
+    h5py
+    nibabel
+  ];
+
+  checkInputs = [ pytest ];
+
+  # disable tests for now due to:
+  #   - some tests require data download (see dipy/dipy/issues/2092);
+  #   - running the tests manually causes a multiprocessing hang;
+  #   - import weirdness when running the tests
+  doCheck = false;
+
+  pythonImportsCheck = [
+    "dipy"
+    "dipy.core"
+    "dipy.direction"
+    "dipy.tracking"
+    "dipy.reconst"
+    "dipy.io"
+    "dipy.viz"
+    "dipy.boots"
+    "dipy.data"
+    "dipy.utils"
+    "dipy.segment"
+    "dipy.sims"
+    "dipy.stats"
+    "dipy.denoise"
+    "dipy.workflows"
+    "dipy.nn"
+  ];
+
+  meta = with lib; {
+    homepage = "https://dipy.org/";
+    description = "Diffusion imaging toolkit for Python";
+    license = licenses.bsd3;
+    maintainers = with maintainers; [ bcdarwin ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 2331f447f19e..aba67f63a828 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -619,6 +619,8 @@ in {
 
   diofant = callPackage ../development/python-modules/diofant { };
 
+  dipy = callPackage ../development/python-modules/dipy { };
+
   docrep = callPackage ../development/python-modules/docrep { };
 
   dominate = callPackage ../development/python-modules/dominate { };
-- 
cgit 1.4.1