From cebbb18e9e40eb58e20b4c6e89aabbc2a0c4ee3f Mon Sep 17 00:00:00 2001
From: Michel Kuhlmann <michel@kuhlmanns.info>
Date: Fri, 11 Dec 2015 10:39:13 +0100
Subject: R: 3.2.2 -> 3.2.3

---
 pkgs/applications/science/math/R/default.nix       |  7 +++----
 .../R/fix-tests-without-recommended-packages.patch | 24 ----------------------
 2 files changed, 3 insertions(+), 28 deletions(-)
 delete mode 100644 pkgs/applications/science/math/R/fix-tests-without-recommended-packages.patch

(limited to 'pkgs/applications/science')

diff --git a/pkgs/applications/science/math/R/default.nix b/pkgs/applications/science/math/R/default.nix
index 7c8e76d676b7..183a1f503753 100644
--- a/pkgs/applications/science/math/R/default.nix
+++ b/pkgs/applications/science/math/R/default.nix
@@ -6,11 +6,11 @@
 }:
 
 stdenv.mkDerivation rec {
-  name = "R-3.2.2";
+  name = "R-3.2.3";
 
   src = fetchurl {
     url = "http://cran.r-project.org/src/base/R-3/${name}.tar.gz";
-    sha256 = "07a6s865bjnh7w0fqsrkv1pva76w99v86w0w787qpdil87km54cw";
+    sha256 = "b93b7d878138279234160f007cb9b7f81b8a72c012a15566e9ec5395cfd9b6c1";
   };
 
   buildInputs = [ bzip2 gfortran libX11 libXmu libXt
@@ -19,8 +19,7 @@ stdenv.mkDerivation rec {
     which jdk openblas curl
   ];
 
-  patches = [ ./no-usr-local-search-paths.patch
-              ./fix-tests-without-recommended-packages.patch ];
+  patches = [ ./no-usr-local-search-paths.patch ];
 
   preConfigure = ''
     configureFlagsArray=(
diff --git a/pkgs/applications/science/math/R/fix-tests-without-recommended-packages.patch b/pkgs/applications/science/math/R/fix-tests-without-recommended-packages.patch
deleted file mode 100644
index c736c7098a30..000000000000
--- a/pkgs/applications/science/math/R/fix-tests-without-recommended-packages.patch
+++ /dev/null
@@ -1,24 +0,0 @@
-diff -Naur R-3.2.2-upstream/tests/reg-packages.R R-3.2.2/tests/reg-packages.R
---- R-3.2.2-upstream/tests/reg-packages.R	2015-08-05 17:45:05.000000000 -0430
-+++ R-3.2.2/tests/reg-packages.R	2015-10-01 02:11:05.484992903 -0430
-@@ -82,7 +82,8 @@
- ## pkgB tests an empty R directory
- dir.create(file.path(pkgPath, "pkgB", "R"), recursive = TRUE,
- 	   showWarnings = FALSE)
--p.lis <- if("Matrix" %in% row.names(installed.packages(.Library)))
-+matrixIsInstalled <- "Matrix" %in% row.names(installed.packages(.Library))
-+p.lis <- if(matrixIsInstalled)
- 	     c("pkgA", "pkgB", "exNSS4") else "exNSS4"
- for(p. in p.lis) {
-     cat("building package", p., "...\n")
-@@ -111,8 +112,8 @@
-   tools::assertError(is.null(pkgA:::nilData))
- }
- 
--if(dir.exists(file.path("myLib", "exNSS4"))) {
--    for(ns in c("pkgB", "pkgA", "Matrix", "exNSS4")) unloadNamespace(ns)
-+if(matrixIsInstalled && dir.exists(file.path("myLib", "exNSS4"))) {
-+    for(ns in c(rev(p.lis), "Matrix")) unloadNamespace(ns)
-     ## Both exNSS4 and Matrix define "atomicVector" *the same*,
-     ## but  'exNSS4'  has it extended - and hence *both* are registered in cache -> "conflicts"
-     requireNamespace("exNSS4", lib= "myLib")
-- 
cgit 1.4.1