From 7b75bc79efa99e985e7786aed991f8cfecac6747 Mon Sep 17 00:00:00 2001 From: "R. RyanTM" Date: Sat, 7 Apr 2018 20:11:48 -0700 Subject: bcftools: 1.7 -> 1.8 MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/bcftools/versions. These checks were done: - built on NixOS - ran ‘/nix/store/5nqh165r343n7954gm49wbsdwf9iic3l-bcftools-1.8/bin/plot-vcfstats -h’ got 0 exit code - ran ‘/nix/store/5nqh165r343n7954gm49wbsdwf9iic3l-bcftools-1.8/bin/plot-vcfstats --help’ got 0 exit code - ran ‘/nix/store/5nqh165r343n7954gm49wbsdwf9iic3l-bcftools-1.8/bin/bcftools -h’ got 0 exit code - ran ‘/nix/store/5nqh165r343n7954gm49wbsdwf9iic3l-bcftools-1.8/bin/bcftools --help’ got 0 exit code - ran ‘/nix/store/5nqh165r343n7954gm49wbsdwf9iic3l-bcftools-1.8/bin/bcftools help’ got 0 exit code - found 1.8 with grep in /nix/store/5nqh165r343n7954gm49wbsdwf9iic3l-bcftools-1.8 - directory tree listing: https://gist.github.com/c9ddd760c0c740dabaabeb604fbb8a5a --- pkgs/applications/science/biology/bcftools/default.nix | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) (limited to 'pkgs/applications/science') diff --git a/pkgs/applications/science/biology/bcftools/default.nix b/pkgs/applications/science/biology/bcftools/default.nix index 5e899568a7df..1459f5b29a72 100644 --- a/pkgs/applications/science/biology/bcftools/default.nix +++ b/pkgs/applications/science/biology/bcftools/default.nix @@ -3,11 +3,11 @@ stdenv.mkDerivation rec { name = "${pname}-${version}"; pname = "bcftools"; - version = "1.7"; + version = "1.8"; src = fetchurl { url = "https://github.com/samtools/bcftools/releases/download/${version}/${name}.tar.bz2"; - sha256 = "1l82sgw86l1626b7kxv3h0696lbj7317bb48rvqb1zqd3gcn6kyx"; + sha256 = "1vgw2mwngq20c530zim52zvgmw1lci8rzl33pvh44xqk3xlzvjsa"; }; nativeBuildInputs = [ perl ]; -- cgit 1.4.1 From 18fa54032aef11e2250b4eb5c076ef893604eab0 Mon Sep 17 00:00:00 2001 From: Jörg Thalheim Date: Sun, 8 Apr 2018 09:35:20 +0100 Subject: bcftools: python/perl is needed for shebangs --- pkgs/applications/science/biology/bcftools/default.nix | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) (limited to 'pkgs/applications/science') diff --git a/pkgs/applications/science/biology/bcftools/default.nix b/pkgs/applications/science/biology/bcftools/default.nix index 1459f5b29a72..1ad1647c70e5 100644 --- a/pkgs/applications/science/biology/bcftools/default.nix +++ b/pkgs/applications/science/biology/bcftools/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, htslib, zlib, bzip2, lzma, curl, perl, bash }: +{ stdenv, fetchurl, htslib, zlib, bzip2, lzma, curl, perl, python, bash }: stdenv.mkDerivation rec { name = "${pname}-${version}"; @@ -10,9 +10,7 @@ stdenv.mkDerivation rec { sha256 = "1vgw2mwngq20c530zim52zvgmw1lci8rzl33pvh44xqk3xlzvjsa"; }; - nativeBuildInputs = [ perl ]; - - buildInputs = [ htslib zlib bzip2 lzma curl ]; + buildInputs = [ htslib zlib bzip2 lzma curl perl python ]; makeFlags = [ "HSTDIR=${htslib}" -- cgit 1.4.1