From fbc9a4d7dce249963797d82a788ee9f2acaa21cf Mon Sep 17 00:00:00 2001
From: Ben Darwin <bcdarwin@gmail.com>
Date: Sun, 19 Mar 2017 18:54:37 -0400
Subject: ants: set $ANTSPATH variable in shell scripts

---
 pkgs/applications/science/biology/ants/default.nix | 10 ++++++++--
 1 file changed, 8 insertions(+), 2 deletions(-)

(limited to 'pkgs/applications/science/biology')

diff --git a/pkgs/applications/science/biology/ants/default.nix b/pkgs/applications/science/biology/ants/default.nix
index fa40e53aa0a5..24ab2ee9ac5e 100644
--- a/pkgs/applications/science/biology/ants/default.nix
+++ b/pkgs/applications/science/biology/ants/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitHub, cmake, itk, vtk }:
+{ stdenv, fetchFromGitHub, cmake, makeWrapper, itk, vtk }:
 
 stdenv.mkDerivation rec {
   _name    = "ANTs";
@@ -12,7 +12,7 @@ stdenv.mkDerivation rec {
     sha256 = "0gyys1lf69bl3569cskxc8r5llwcr0dsyzvlby5skhfpsyw0dh8r";
   };
 
-  nativeBuildInputs = [ cmake ];
+  nativeBuildInputs = [ cmake makeWrapper ];
   buildInputs = [ itk vtk ];
 
   cmakeFlags = [ "-DANTS_SUPERBUILD=FALSE" "-DUSE_VTK=TRUE" ];
@@ -20,6 +20,12 @@ stdenv.mkDerivation rec {
   checkPhase = "ctest";
   doCheck = false;
 
+  postInstall = ''
+    for file in $out/bin/*; do
+      wrapProgram $file --set ANTSPATH "$out/bin"
+    done
+  '';
+
   meta = with stdenv.lib; {
     homepage = https://github.com/stnava/ANTs;
     description = "Advanced normalization toolkit for medical image registration and other processing";
-- 
cgit 1.4.1