From 59ca5d213f99d10f9cc187763876b5c4008bac7d Mon Sep 17 00:00:00 2001 From: Jason Daniel Augustine Gilliland Date: Sat, 17 Dec 2016 00:36:53 -0500 Subject: freebayes: init at 1.1.0 Signed-off-by: zimbatm --- .../science/biology/freebayes/builder.sh | 11 +++++++++ .../science/biology/freebayes/default.nix | 27 ++++++++++++++++++++++ 2 files changed, 38 insertions(+) create mode 100644 pkgs/applications/science/biology/freebayes/builder.sh create mode 100644 pkgs/applications/science/biology/freebayes/default.nix (limited to 'pkgs/applications/science/biology') diff --git a/pkgs/applications/science/biology/freebayes/builder.sh b/pkgs/applications/science/biology/freebayes/builder.sh new file mode 100644 index 000000000000..a9f56e77d7e3 --- /dev/null +++ b/pkgs/applications/science/biology/freebayes/builder.sh @@ -0,0 +1,11 @@ +source $stdenv/setup + +unpackPhase + +cd freebayes-* + +make + +mkdir -p $out/bin +cp bin/freebayes bin/bamleftalign $out/bin +cp scripts/* $out/bin diff --git a/pkgs/applications/science/biology/freebayes/default.nix b/pkgs/applications/science/biology/freebayes/default.nix new file mode 100644 index 000000000000..ef0da619b25a --- /dev/null +++ b/pkgs/applications/science/biology/freebayes/default.nix @@ -0,0 +1,27 @@ +{ stdenv, fetchFromGitHub, cmake, gcc, zlib}: + +stdenv.mkDerivation rec { + name = "freebayes-${version}"; + version = "1.1.0"; + + src = fetchFromGitHub { + name = "freebayes-${version}-src"; + owner = "ekg"; + repo = "freebayes"; + rev = "refs/tags/v${version}"; + sha256 = "0xb8aicb36w9mfs1gq1x7mcp3p82kl7i61d162hfncqzg2npg8rr"; + fetchSubmodules = true; + }; + + buildInputs = [ cmake gcc zlib ]; + + builder = ./builder.sh; + + meta = with stdenv.lib; { + description = "Bayesian haplotype-based polymorphism discovery and genotyping"; + license = licenses.mit; + homepage = https://github.com/ekg/freebayes; + maintainers = with maintainers; [ jdagilliland ]; + platforms = [ "x86_64-linux" ]; + }; +} -- cgit 1.4.1